Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c114' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7411801-fedora-39-x86_64 --chroot fedora-39-x86_64 Version: 0.72 PID: 8091 Logging PID: 8092 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7411801, 'buildroot_pkgs': [], 'chroot': 'fedora-39-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '21879d95a818c762c5aa9b89bbd7913c8f52762c', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/morphio', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'morphio', 'package_version': '3.3.9-2', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-39-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/ankursinha', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/ankursinha', 'tags': [], 'task_id': '7411801-fedora-39-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/morphio /var/lib/copr-rpmbuild/workspace/workdir-fkvfq2el/morphio --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/morphio', '/var/lib/copr-rpmbuild/workspace/workdir-fkvfq2el/morphio', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-fkvfq2el/morphio'... Running: git checkout 21879d95a818c762c5aa9b89bbd7913c8f52762c -- cmd: ['git', 'checkout', '21879d95a818c762c5aa9b89bbd7913c8f52762c', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-fkvfq2el/morphio rc: 0 stdout: stderr: Note: switching to '21879d95a818c762c5aa9b89bbd7913c8f52762c'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 21879d9 automatic import of morphio Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-fkvfq2el/morphio rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading MorphIO-3.3.9.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o MorphIO-3.3.9.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/morphio/MorphIO-3.3.9.tar.gz/md5/789314860fdd6941794dc69f51175da2/MorphIO-3.3.9.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 3484k 100 3484k 0 0 22.7M 0 --:--:-- --:--:-- --:--:-- 22.8M INFO: Reading stdout from command: md5sum MorphIO-3.3.9.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-fkvfq2el/morphio/morphio.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-fkvfq2el/morphio --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714927132.211660 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-fkvfq2el/morphio/morphio.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-fkvfq2el/morphio --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714927132.211660 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-fkvfq2el/morphio/morphio.spec) Config(fedora-39-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.5 INFO: Mock Version: 5.5 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-bootstrap-1714927132.211660/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:39 INFO: Pulling image: registry.fedoraproject.org/fedora:39 INFO: Copy content of container registry.fedoraproject.org/fedora:39 to /var/lib/mock/fedora-39-x86_64-bootstrap-1714927132.211660/root INFO: Checking that registry.fedoraproject.org/fedora:39 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:39 with podman image mount INFO: image registry.fedoraproject.org/fedora:39 as /var/lib/containers/storage/overlay/691efbdc40ab301a0d9a0d0092e3963121139560ee96f1e4bfb5b2c34335a588/merged INFO: umounting image registry.fedoraproject.org/fedora:39 (/var/lib/containers/storage/overlay/691efbdc40ab301a0d9a0d0092e3963121139560ee96f1e4bfb5b2c34335a588/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 54 MB/s | 18 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 71 MB/s | 75 MB 00:01 fedora 32 MB/s | 89 MB 00:02 updates 25 MB/s | 35 MB 00:01 Last metadata expiration check: 0:00:03 ago on Sun May 5 16:39:40 2024. Package python3-dnf-4.19.2-1.fc39.noarch is already installed. Dependencies resolved. ========================================================================================================================= Package Arch Version Repository Size ========================================================================================================================= Installing: python3-dnf-plugins-core noarch 4.6.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 302 k Upgrading: dnf noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 491 k dnf-data noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40 k python3-dnf noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 553 k yum noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k Installing dependencies: dbus-libs x86_64 1:1.14.10-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 156 k python3-dateutil noarch 1:2.8.2-13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 345 k python3-dbus x86_64 1.3.2-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 145 k python3-distro noarch 1.9.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 45 k python3-six noarch 1.16.0-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k python3-systemd x86_64 235-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100 k Transaction Summary ========================================================================================================================= Install 7 Packages Upgrade 4 Packages Total download size: 2.2 M Downloading Packages: (1/11): dbus-libs-1.14.10-3.fc40.x86_64.rpm 2.0 MB/s | 156 kB 00:00 (2/11): python3-dbus-1.3.2-6.fc40.x86_64.rpm 1.6 MB/s | 145 kB 00:00 (3/11): python3-distro-1.9.0-3.fc40.noarch.rpm 1.9 MB/s | 45 kB 00:00 (4/11): python3-dateutil-2.8.2-13.fc40.noarch.r 3.1 MB/s | 345 kB 00:00 (5/11): python3-dnf-plugins-core-4.6.0-1.fc41.n 9.5 MB/s | 302 kB 00:00 (6/11): python3-six-1.16.0-14.fc40.noarch.rpm 1.7 MB/s | 41 kB 00:00 (7/11): python3-systemd-235-9.fc40.x86_64.rpm 4.1 MB/s | 100 kB 00:00 (8/11): dnf-data-4.19.2-1.fc41.noarch.rpm 1.8 MB/s | 40 kB 00:00 (9/11): dnf-4.19.2-1.fc41.noarch.rpm 18 MB/s | 491 kB 00:00 (10/11): yum-4.19.2-1.fc41.noarch.rpm 2.2 MB/s | 37 kB 00:00 (11/11): python3-dnf-4.19.2-1.fc41.noarch.rpm 15 MB/s | 553 kB 00:00 -------------------------------------------------------------------------------- Total 13 MB/s | 2.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Upgrading : dnf-data-4.19.2-1.fc41.noarch 1/15 Upgrading : python3-dnf-4.19.2-1.fc41.noarch 2/15 Upgrading : dnf-4.19.2-1.fc41.noarch 3/15 Running scriptlet: dnf-4.19.2-1.fc41.noarch 3/15 Installing : python3-systemd-235-9.fc40.x86_64 4/15 Installing : python3-six-1.16.0-14.fc40.noarch 5/15 Installing : python3-dateutil-1:2.8.2-13.fc40.noarch 6/15 Installing : python3-distro-1.9.0-3.fc40.noarch 7/15 Installing : dbus-libs-1:1.14.10-3.fc40.x86_64 8/15 Installing : python3-dbus-1.3.2-6.fc40.x86_64 9/15 Installing : python3-dnf-plugins-core-4.6.0-1.fc41.noarch 10/15 Upgrading : yum-4.19.2-1.fc41.noarch 11/15 Cleanup : yum-4.19.2-1.fc39.noarch 12/15 Running scriptlet: dnf-4.19.2-1.fc39.noarch 13/15 Cleanup : dnf-4.19.2-1.fc39.noarch 13/15 Running scriptlet: dnf-4.19.2-1.fc39.noarch 13/15 Cleanup : python3-dnf-4.19.2-1.fc39.noarch 14/15 Cleanup : dnf-data-4.19.2-1.fc39.noarch 15/15 Running scriptlet: dnf-data-4.19.2-1.fc39.noarch 15/15 Verifying : dbus-libs-1:1.14.10-3.fc40.x86_64 1/15 Verifying : python3-dateutil-1:2.8.2-13.fc40.noarch 2/15 Verifying : python3-dbus-1.3.2-6.fc40.x86_64 3/15 Verifying : python3-distro-1.9.0-3.fc40.noarch 4/15 Verifying : python3-dnf-plugins-core-4.6.0-1.fc41.noarch 5/15 Verifying : python3-six-1.16.0-14.fc40.noarch 6/15 Verifying : python3-systemd-235-9.fc40.x86_64 7/15 Verifying : dnf-4.19.2-1.fc41.noarch 8/15 Verifying : dnf-4.19.2-1.fc39.noarch 9/15 Verifying : dnf-data-4.19.2-1.fc41.noarch 10/15 Verifying : dnf-data-4.19.2-1.fc39.noarch 11/15 Verifying : python3-dnf-4.19.2-1.fc41.noarch 12/15 Verifying : python3-dnf-4.19.2-1.fc39.noarch 13/15 Verifying : yum-4.19.2-1.fc41.noarch 14/15 Verifying : yum-4.19.2-1.fc39.noarch 15/15 Upgraded: dnf-4.19.2-1.fc41.noarch dnf-data-4.19.2-1.fc41.noarch python3-dnf-4.19.2-1.fc41.noarch yum-4.19.2-1.fc41.noarch Installed: dbus-libs-1:1.14.10-3.fc40.x86_64 python3-dateutil-1:2.8.2-13.fc40.noarch python3-dbus-1.3.2-6.fc40.x86_64 python3-distro-1.9.0-3.fc40.noarch python3-dnf-plugins-core-4.6.0-1.fc41.noarch python3-six-1.16.0-14.fc40.noarch python3-systemd-235-9.fc40.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1714927132.211660/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc41.noarch python3-dnf-plugins-core-4.6.0-1.fc41.noarch yum-4.19.2-1.fc41.noarch Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 38 kB/s | 1.5 kB 00:00 Copr repository 60 MB/s | 18 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 70 kB/s | 3.8 kB 00:00 fedora 981 kB/s | 23 kB 00:00 updates 670 kB/s | 21 kB 00:00 Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing group/module packages: bash x86_64 5.2.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M bzip2 x86_64 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 52 k coreutils x86_64 9.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M cpio x86_64 2.15-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 285 k diffutils x86_64 3.10-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 397 k fedora-release-common noarch 41-0.9 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22 k findutils x86_64 1:4.9.0-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 482 k gawk x86_64 5.3.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M glibc-minimal-langpack x86_64 2.39.9000-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 111 k grep x86_64 3.11-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 289 k gzip x86_64 1.13-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 164 k info x86_64 7.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 182 k patch x86_64 2.7.6-24.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 131 k redhat-rpm-config noarch 288-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 75 k rpm-build x86_64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 70 k sed x86_64 4.9-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 309 k shadow-utils x86_64 2:4.15.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 M tar x86_64 2:1.35-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 847 k unzip x86_64 6.0-63.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 185 k util-linux x86_64 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M which x86_64 2.21-41.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k xz x86_64 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 532 k Installing dependencies: alternatives x86_64 1.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40 k ansible-srpm-macros noarch 1-15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k audit-libs x86_64 4.0.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 126 k authselect x86_64 1.5.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 141 k authselect-libs x86_64 1.5.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 205 k basesystem noarch 11-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 k binutils x86_64 2.42.50-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.3 M binutils-gold x86_64 2.42.50-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 783 k bzip2-libs x86_64 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k ca-certificates noarch 2023.2.62_v7.0.401-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 862 k coreutils-common x86_64 9.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M cracklib x86_64 2.9.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 82 k crypto-policies noarch 20240320-1.git58e3d95.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 65 k curl x86_64 8.7.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 306 k cyrus-sasl-lib x86_64 2.1.28-19.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 789 k debugedit x86_64 5.0-15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 79 k dwz x86_64 0.15-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 138 k ed x86_64 1.20.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 82 k efi-srpm-macros noarch 5-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22 k elfutils x86_64 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 524 k elfutils-debuginfod-client x86_64 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38 k elfutils-default-yama-scope noarch 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13 k elfutils-libelf x86_64 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 208 k elfutils-libs x86_64 0.191-7.fc41 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======================================================================================================================================== Install 153 Packages Total size: 52 M Installed size: 179 M Downloading Packages: [SKIPPED] gdb-minimal-14.2-6.fc41.x86_64.rpm: Already downloaded [SKIPPED] alternatives-1.26-3.fc40.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-15.fc41.noarch.rpm: Already downloaded [SKIPPED] audit-libs-4.0.1-1.fc41.x86_64.rpm: Already downloaded [SKIPPED] authselect-1.5.0-5.fc41.x86_64.rpm: Already downloaded [SKIPPED] authselect-libs-1.5.0-5.fc41.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-20.fc40.noarch.rpm: Already downloaded [SKIPPED] bash-5.2.26-3.fc40.x86_64.rpm: Already downloaded [SKIPPED] binutils-2.42.50-6.fc41.x86_64.rpm: Already downloaded [SKIPPED] binutils-gold-2.42.50-6.fc41.x86_64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-18.fc40.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-18.fc40.x86_64.rpm: Already 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forge-srpm-macros-0.3.1-1.fc41.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-12.fc40.noarch.rpm: Already downloaded [SKIPPED] gawk-5.3.0-3.fc40.x86_64.rpm: Already downloaded [SKIPPED] gdbm-1.23-6.fc40.x86_64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-6.fc40.x86_64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.9.1-1.fc41.noarch.rpm: Already downloaded [SKIPPED] glibc-2.39.9000-17.fc41.x86_64.rpm: Already downloaded [SKIPPED] glibc-common-2.39.9000-17.fc41.x86_64.rpm: Already downloaded [SKIPPED] glibc-gconv-extra-2.39.9000-17.fc41.x86_64.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.39.9000-17.fc41.x86_64.rpm: Already downloaded [SKIPPED] gmp-6.3.0-1.fc41.x86_64.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-6-5.fc40.noarch.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.6.0-1.fc41.noarch.rpm: Already downloaded [SKIPPED] grep-3.11-8.fc41.x86_64.rpm: Already downloaded [SKIPPED] gzip-1.13-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] 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util-linux-2.40-13.fc41.x86_64 151/153 Running scriptlet: util-linux-2.40-13.fc41.x86_64 151/153 Installing : which-2.21-41.fc40.x86_64 152/153 Installing : info-7.1-2.fc40.x86_64 153/153 Running scriptlet: filesystem-3.18-9.fc41.x86_64 153/153 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch 153/153 Running scriptlet: authselect-libs-1.5.0-5.fc41.x86_64 153/153 Running scriptlet: rpm-4.19.1.1-1.fc40.x86_64 153/153 Running scriptlet: info-7.1-2.fc40.x86_64 153/153 Installed: alternatives-1.26-3.fc40.x86_64 ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-1.fc41.x86_64 authselect-1.5.0-5.fc41.x86_64 authselect-libs-1.5.0-5.fc41.x86_64 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.x86_64 binutils-2.42.50-6.fc41.x86_64 binutils-gold-2.42.50-6.fc41.x86_64 bzip2-1.0.8-18.fc40.x86_64 bzip2-libs-1.0.8-18.fc40.x86_64 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.5-1.fc41.x86_64 coreutils-common-9.5-1.fc41.x86_64 cpio-2.15-1.fc40.x86_64 cracklib-2.9.11-5.fc40.x86_64 crypto-policies-20240320-1.git58e3d95.fc41.noarch curl-8.7.1-1.fc41.x86_64 cyrus-sasl-lib-2.1.28-19.fc40.x86_64 debugedit-5.0-15.fc41.x86_64 diffutils-3.10-5.fc40.x86_64 dwz-0.15-6.fc40.x86_64 ed-1.20.2-1.fc41.x86_64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-7.fc41.x86_64 elfutils-debuginfod-client-0.191-7.fc41.x86_64 elfutils-default-yama-scope-0.191-7.fc41.noarch elfutils-libelf-0.191-7.fc41.x86_64 elfutils-libs-0.191-7.fc41.x86_64 fedora-gpg-keys-41-0.1.noarch fedora-release-41-0.9.noarch fedora-release-common-41-0.9.noarch fedora-release-identity-basic-41-0.9.noarch fedora-repos-41-0.1.noarch fedora-repos-rawhide-41-0.1.noarch file-5.45-5.fc41.x86_64 file-libs-5.45-5.fc41.x86_64 filesystem-3.18-9.fc41.x86_64 findutils-1:4.9.0-8.fc40.x86_64 fonts-srpm-macros-1:2.0.5-14.fc40.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.x86_64 gdb-minimal-14.2-6.fc41.x86_64 gdbm-1:1.23-6.fc40.x86_64 gdbm-libs-1:1.23-6.fc40.x86_64 ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-17.fc41.x86_64 glibc-common-2.39.9000-17.fc41.x86_64 glibc-gconv-extra-2.39.9000-17.fc41.x86_64 glibc-minimal-langpack-2.39.9000-17.fc41.x86_64 gmp-1:6.3.0-1.fc41.x86_64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-8.fc41.x86_64 gzip-1.13-1.fc40.x86_64 info-7.1-2.fc40.x86_64 jansson-2.13.1-9.fc40.x86_64 kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.x86_64 krb5-libs-1.21.2-5.fc40.x86_64 libacl-2.3.2-1.fc40.x86_64 libarchive-3.7.4-1.fc41.x86_64 libattr-2.5.2-3.fc40.x86_64 libblkid-2.40-13.fc41.x86_64 libbrotli-1.1.0-3.fc40.x86_64 libcap-2.69-8.fc41.x86_64 libcap-ng-0.8.5-1.fc41.x86_64 libcom_err-1.47.0-5.fc40.x86_64 libcurl-8.7.1-1.fc41.x86_64 libeconf-0.6.2-1.fc41.x86_64 libevent-2.1.12-12.fc40.x86_64 libfdisk-2.40-13.fc41.x86_64 libffi-3.4.6-1.fc41.x86_64 libgcc-14.0.1-0.16.fc41.x86_64 libgomp-14.0.1-0.16.fc41.x86_64 libidn2-2.3.7-1.fc40.x86_64 libmount-2.40-13.fc41.x86_64 libnghttp2-1.61.0-1.fc41.x86_64 libnsl2-2.0.1-1.fc40.x86_64 libpkgconf-2.1.0-1.fc40.x86_64 libpsl-0.21.5-3.fc40.x86_64 libpwquality-1.4.5-9.fc40.x86_64 libselinux-3.6-4.fc40.x86_64 libsemanage-3.6-3.fc40.x86_64 libsepol-3.6-3.fc40.x86_64 libsmartcols-2.40-13.fc41.x86_64 libssh-0.10.6-6.fc41.x86_64 libssh-config-0.10.6-6.fc41.noarch libstdc++-14.0.1-0.16.fc41.x86_64 libtasn1-4.19.0-6.fc40.x86_64 libtirpc-1.3.4-1.rc3.fc41.x86_64 libtool-ltdl-2.4.7-10.fc40.x86_64 libunistring-1.1-7.fc41.x86_64 libutempter-1.2.1-13.fc40.x86_64 libuuid-2.40-13.fc41.x86_64 libverto-0.3.2-8.fc40.x86_64 libxcrypt-4.4.36-5.fc40.x86_64 libxml2-2.12.6-1.fc41.x86_64 libzstd-1.5.6-1.fc41.x86_64 lua-libs-5.4.6-5.fc40.x86_64 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.x86_64 mpfr-4.2.1-3.fc40.x86_64 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.x86_64 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.7-1.fc40.x86_64 openssl-libs-1:3.2.1-6.fc41.x86_64 p11-kit-0.25.3-4.fc40.x86_64 p11-kit-trust-0.25.3-4.fc40.x86_64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-1.fc41.x86_64 pam-libs-1.6.1-1.fc41.x86_64 patch-2.7.6-24.fc40.x86_64 pcre2-10.43-2.fc41.x86_64 pcre2-syntax-10.43-2.fc41.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.0-1.fc40.x86_64 pkgconf-m4-2.1.0-1.fc40.noarch pkgconf-pkg-config-2.1.0-1.fc40.x86_64 popt-1.19-6.fc40.x86_64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-9.fc41.noarch qt5-srpm-macros-5.15.13-1.fc41.noarch qt6-srpm-macros-6.7.0-1.fc41.noarch readline-8.2-8.fc40.x86_64 redhat-rpm-config-288-1.fc41.noarch rpm-4.19.1.1-1.fc40.x86_64 rpm-build-4.19.1.1-1.fc40.x86_64 rpm-build-libs-4.19.1.1-1.fc40.x86_64 rpm-libs-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 rust-srpm-macros-26.2-1.fc41.noarch sed-4.9-1.fc40.x86_64 setup-2.14.5-2.fc40.noarch shadow-utils-2:4.15.1-2.fc41.x86_64 sqlite-libs-3.45.3-1.fc41.x86_64 systemd-libs-255.5-1.fc41.x86_64 tar-2:1.35-3.fc40.x86_64 unzip-6.0-63.fc40.x86_64 util-linux-2.40-13.fc41.x86_64 util-linux-core-2.40-13.fc41.x86_64 which-2.21-41.fc40.x86_64 xxhash-libs-0.8.2-2.fc40.x86_64 xz-1:5.4.6-3.fc41.x86_64 xz-libs-1:5.4.6-3.fc41.x86_64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.x86_64 zlib-ng-compat-2.1.6-2.fc40.x86_64 zstd-1.5.6-1.fc41.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-3.fc40.x86_64 ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-1.fc41.x86_64 authselect-1.5.0-5.fc41.x86_64 authselect-libs-1.5.0-5.fc41.x86_64 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.x86_64 binutils-2.42.50-6.fc41.x86_64 binutils-gold-2.42.50-6.fc41.x86_64 bzip2-1.0.8-18.fc40.x86_64 bzip2-libs-1.0.8-18.fc40.x86_64 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.5-1.fc41.x86_64 coreutils-common-9.5-1.fc41.x86_64 cpio-2.15-1.fc40.x86_64 cracklib-2.9.11-5.fc40.x86_64 crypto-policies-20240320-1.git58e3d95.fc41.noarch curl-8.7.1-1.fc41.x86_64 cyrus-sasl-lib-2.1.28-19.fc40.x86_64 debugedit-5.0-15.fc41.x86_64 diffutils-3.10-5.fc40.x86_64 dwz-0.15-6.fc40.x86_64 ed-1.20.2-1.fc41.x86_64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-7.fc41.x86_64 elfutils-debuginfod-client-0.191-7.fc41.x86_64 elfutils-default-yama-scope-0.191-7.fc41.noarch elfutils-libelf-0.191-7.fc41.x86_64 elfutils-libs-0.191-7.fc41.x86_64 fedora-gpg-keys-41-0.1.noarch fedora-release-41-0.9.noarch fedora-release-common-41-0.9.noarch fedora-release-identity-basic-41-0.9.noarch fedora-repos-41-0.1.noarch fedora-repos-rawhide-41-0.1.noarch file-5.45-5.fc41.x86_64 file-libs-5.45-5.fc41.x86_64 filesystem-3.18-9.fc41.x86_64 findutils-4.9.0-8.fc40.x86_64 fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.x86_64 gdb-minimal-14.2-6.fc41.x86_64 gdbm-1.23-6.fc40.x86_64 gdbm-libs-1.23-6.fc40.x86_64 ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-17.fc41.x86_64 glibc-common-2.39.9000-17.fc41.x86_64 glibc-gconv-extra-2.39.9000-17.fc41.x86_64 glibc-minimal-langpack-2.39.9000-17.fc41.x86_64 gmp-6.3.0-1.fc41.x86_64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-8.fc41.x86_64 gzip-1.13-1.fc40.x86_64 info-7.1-2.fc40.x86_64 jansson-2.13.1-9.fc40.x86_64 kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.x86_64 krb5-libs-1.21.2-5.fc40.x86_64 libacl-2.3.2-1.fc40.x86_64 libarchive-3.7.4-1.fc41.x86_64 libattr-2.5.2-3.fc40.x86_64 libblkid-2.40-13.fc41.x86_64 libbrotli-1.1.0-3.fc40.x86_64 libcap-2.69-8.fc41.x86_64 libcap-ng-0.8.5-1.fc41.x86_64 libcom_err-1.47.0-5.fc40.x86_64 libcurl-8.7.1-1.fc41.x86_64 libeconf-0.6.2-1.fc41.x86_64 libevent-2.1.12-12.fc40.x86_64 libfdisk-2.40-13.fc41.x86_64 libffi-3.4.6-1.fc41.x86_64 libgcc-14.0.1-0.16.fc41.x86_64 libgomp-14.0.1-0.16.fc41.x86_64 libidn2-2.3.7-1.fc40.x86_64 libmount-2.40-13.fc41.x86_64 libnghttp2-1.61.0-1.fc41.x86_64 libnsl2-2.0.1-1.fc40.x86_64 libpkgconf-2.1.0-1.fc40.x86_64 libpsl-0.21.5-3.fc40.x86_64 libpwquality-1.4.5-9.fc40.x86_64 libselinux-3.6-4.fc40.x86_64 libsemanage-3.6-3.fc40.x86_64 libsepol-3.6-3.fc40.x86_64 libsmartcols-2.40-13.fc41.x86_64 libssh-0.10.6-6.fc41.x86_64 libssh-config-0.10.6-6.fc41.noarch libstdc++-14.0.1-0.16.fc41.x86_64 libtasn1-4.19.0-6.fc40.x86_64 libtirpc-1.3.4-1.rc3.fc41.x86_64 libtool-ltdl-2.4.7-10.fc40.x86_64 libunistring-1.1-7.fc41.x86_64 libutempter-1.2.1-13.fc40.x86_64 libuuid-2.40-13.fc41.x86_64 libverto-0.3.2-8.fc40.x86_64 libxcrypt-4.4.36-5.fc40.x86_64 libxml2-2.12.6-1.fc41.x86_64 libzstd-1.5.6-1.fc41.x86_64 lua-libs-5.4.6-5.fc40.x86_64 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.x86_64 mpfr-4.2.1-3.fc40.x86_64 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.x86_64 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.7-1.fc40.x86_64 openssl-libs-3.2.1-6.fc41.x86_64 p11-kit-0.25.3-4.fc40.x86_64 p11-kit-trust-0.25.3-4.fc40.x86_64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-1.fc41.x86_64 pam-libs-1.6.1-1.fc41.x86_64 patch-2.7.6-24.fc40.x86_64 pcre2-10.43-2.fc41.x86_64 pcre2-syntax-10.43-2.fc41.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.0-1.fc40.x86_64 pkgconf-m4-2.1.0-1.fc40.noarch pkgconf-pkg-config-2.1.0-1.fc40.x86_64 popt-1.19-6.fc40.x86_64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-9.fc41.noarch qt5-srpm-macros-5.15.13-1.fc41.noarch qt6-srpm-macros-6.7.0-1.fc41.noarch readline-8.2-8.fc40.x86_64 redhat-rpm-config-288-1.fc41.noarch rpm-4.19.1.1-1.fc40.x86_64 rpm-build-4.19.1.1-1.fc40.x86_64 rpm-build-libs-4.19.1.1-1.fc40.x86_64 rpm-libs-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 rust-srpm-macros-26.2-1.fc41.noarch sed-4.9-1.fc40.x86_64 setup-2.14.5-2.fc40.noarch shadow-utils-4.15.1-2.fc41.x86_64 sqlite-libs-3.45.3-1.fc41.x86_64 systemd-libs-255.5-1.fc41.x86_64 tar-1.35-3.fc40.x86_64 unzip-6.0-63.fc40.x86_64 util-linux-2.40-13.fc41.x86_64 util-linux-core-2.40-13.fc41.x86_64 which-2.21-41.fc40.x86_64 xxhash-libs-0.8.2-2.fc40.x86_64 xz-5.4.6-3.fc41.x86_64 xz-libs-5.4.6-3.fc41.x86_64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.x86_64 zlib-ng-compat-2.1.6-2.fc40.x86_64 zstd-1.5.6-1.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1713916800 Wrote: /builddir/build/SRPMS/morphio-3.3.9-2.fc41.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-39-x86_64-1714927132.211660/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1714927132.211660/root/var/log/dnf.log /var/lib/mock/fedora-39-x86_64-1714927132.211660/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1714927132.211660/root/var/log/dnf.rpm.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-fkvfq2el/morphio/morphio.spec) Config(child) 1 minutes 23 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/morphio-3.3.9-2.fc41.src.rpm) Config(fedora-39-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-bootstrap-1714927132.211660/root. INFO: reusing tmpfs at /var/lib/mock/fedora-39-x86_64-bootstrap-1714927132.211660/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1714927132.211660/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc41.noarch python3-dnf-plugins-core-4.6.0-1.fc41.noarch yum-4.19.2-1.fc41.noarch Finish: chroot init Start: build phase for morphio-3.3.9-2.fc41.src.rpm Start: build setup for morphio-3.3.9-2.fc41.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1713916800 Wrote: /builddir/build/SRPMS/morphio-3.3.9-2.fc41.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 43 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 64 kB/s | 3.8 kB 00:00 fedora 817 kB/s | 23 kB 00:00 updates 597 kB/s | 21 kB 00:00 Dependencies resolved. ============================================================================================================================================== Package Arch Version Repository Size ============================================================================================================================================== Installing: boost-devel x86_64 1.83.0-3.fc40 copr_base 12 M catch2-devel x86_64 2.13.10-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 197 k cmake x86_64 3.28.3-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.6 M gcc-c++ x86_64 14.0.1-0.16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14 M gsl-lite-devel x86_64 0.41.0-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 62 k gulrak-filesystem-devel x86_64 1.5.14-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 60 k hdf5-devel x86_64 1.12.1-15.fc40 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downloaded [SKIPPED] python3-numpy-1.26.4-3.fc41.x86_64.rpm: Already downloaded [SKIPPED] python3-pytest-7.4.3-5.fc41.noarch.rpm: Already downloaded [SKIPPED] abattis-cantarell-vf-fonts-0.301-12.fc40.noarch.rpm: Already downloaded [SKIPPED] cairo-1.18.0-3.fc40.x86_64.rpm: Already downloaded [SKIPPED] default-fonts-core-sans-4.0-13.fc41.noarch.rpm: Already downloaded [SKIPPED] expat-2.6.2-1.fc41.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-3.4.2-1.fc41.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-netlib-3.4.2-1.fc41.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-openblas-openmp-3.4.2-1.fc41.x86_64.rpm: Already downloaded [SKIPPED] fontconfig-2.15.0-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] fonts-filesystem-2.0.5-14.fc40.noarch.rpm: Already downloaded [SKIPPED] freetype-2.13.2-5.fc40.x86_64.rpm: Already downloaded [SKIPPED] glib2-2.80.0-1.fc41.x86_64.rpm: Already downloaded [SKIPPED] gnutls-3.8.5-1.fc41.x86_64.rpm: Already downloaded [SKIPPED] google-noto-fonts-common-20240401-1.fc41.noarch.rpm: Already downloaded [SKIPPED] google-noto-sans-vf-fonts-20240401-1.fc41.noarch.rpm: Already downloaded [SKIPPED] harfbuzz-8.4.0-1.fc41.x86_64.rpm: Already downloaded [SKIPPED] hdf5-1.12.1-15.fc40.x86_64.rpm: Already downloaded [SKIPPED] jbigkit-libs-2.1-29.fc40.x86_64.rpm: Already downloaded [SKIPPED] libX11-1.8.9-1.fc41.x86_64.rpm: Already downloaded [SKIPPED] libX11-common-1.8.9-1.fc41.noarch.rpm: Already downloaded [SKIPPED] libXau-1.0.11-6.fc40.x86_64.rpm: Already downloaded [SKIPPED] libXext-1.3.6-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libXrender-0.9.11-6.fc40.x86_64.rpm: Already downloaded [SKIPPED] libaec-1.1.2-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libb2-0.98.1-11.fc40.x86_64.rpm: Already downloaded [SKIPPED] libgfortran-14.0.1-0.16.fc41.x86_64.rpm: Already downloaded [SKIPPED] libimagequant-4.0.3-3.fc40.x86_64.rpm: Already downloaded [SKIPPED] libjpeg-turbo-3.0.2-2.fc41.x86_64.rpm: Already downloaded [SKIPPED] liblerc-4.0.0-6.fc40.x86_64.rpm: Already downloaded [SKIPPED] libpng-1.6.40-3.fc40.x86_64.rpm: Already downloaded [SKIPPED] libquadmath-14.0.1-0.16.fc41.x86_64.rpm: Already downloaded [SKIPPED] libtiff-4.6.0-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] libwebp-1.4.0-1.fc41.x86_64.rpm: Already downloaded [SKIPPED] libxcb-1.17.0-1.fc41.x86_64.rpm: Already downloaded [SKIPPED] mpdecimal-2.5.1-9.fc40.x86_64.rpm: Already downloaded [SKIPPED] nettle-3.9.1-6.fc40.x86_64.rpm: Already downloaded [SKIPPED] openblas-0.3.26-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] openblas-openmp-0.3.26-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] pixman-0.43.4-1.fc41.x86_64.rpm: Already downloaded [SKIPPED] pyproject-rpm-macros-1.12.0-1.fc40.noarch.rpm: Already downloaded [SKIPPED] python-pip-wheel-24.0-2.fc41.noarch.rpm: Already downloaded [SKIPPED] python-rpm-macros-3.12-9.fc41.noarch.rpm: Already downloaded [SKIPPED] python3-3.12.3-2.fc41.x86_64.rpm: Already downloaded [SKIPPED] python3-charset-normalizer-3.3.2-3.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-devel-3.12.3-2.fc41.x86_64.rpm: Already downloaded [SKIPPED] python3-idna-3.7-1.fc41.noarch.rpm: Already downloaded [SKIPPED] python3-iniconfig-1.1.1-16.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-libs-3.12.3-2.fc41.x86_64.rpm: Already downloaded [SKIPPED] python3-packaging-24.0-1.fc41.noarch.rpm: Already downloaded [SKIPPED] python3-pluggy-1.3.0-3.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-requests-2.31.0-4.fc41.noarch.rpm: Already downloaded [SKIPPED] python3-rpm-generators-14-10.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-rpm-macros-3.12-9.fc41.noarch.rpm: Already downloaded [SKIPPED] python3-setuptools-69.2.0-1.fc41.noarch.rpm: Already downloaded [SKIPPED] python3-setuptools_scm-8.0.4-3.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-six-1.16.0-14.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-typing-extensions-4.11.0-1.fc41.noarch.rpm: Already 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perl-mro-1.28-507.fc41.x86_64.rpm 1.4 MB/s | 29 kB 00:00 (272/286): perl-overload-1.37-507.fc41.noarch.r 2.6 MB/s | 46 kB 00:00 (273/286): perl-namespace-clean-0.27-26.fc40.no 1.5 MB/s | 29 kB 00:00 (274/286): perl-libs-5.38.2-507.fc41.x86_64.rpm 29 MB/s | 2.2 MB 00:00 (275/286): perl-overloading-0.02-507.fc41.noarc 710 kB/s | 13 kB 00:00 (276/286): perl-parent-0.241-502.fc40.noarch.rp 824 kB/s | 15 kB 00:00 (277/286): perl-podlators-5.01-502.fc40.noarch. 6.0 MB/s | 121 kB 00:00 (278/286): perl-vars-1.05-507.fc41.noarch.rpm 658 kB/s | 13 kB 00:00 (279/286): perl-version-0.99.32-1.fc41.x86_64.r 3.1 MB/s | 63 kB 00:00 (280/286): python3-cached_property-1.5.2-13.fc4 1.2 MB/s | 20 kB 00:00 (281/286): rhash-1.4.4-1.fc41.x86_64.rpm 10 MB/s | 196 kB 00:00 (282/286): rav1e-libs-0.7.1-1.fc40.x86_64.rpm 23 MB/s | 1.0 MB 00:00 (283/286): perltidy-20240202-1.fc40.noarch.rpm 15 MB/s | 736 kB 00:00 (284/286): zlib-ng-compat-devel-2.1.6-2.fc40.x8 1.7 MB/s | 36 kB 00:00 (285/286): vim-filesystem-9.1.354-1.fc41.noarch 676 kB/s | 17 kB 00:00 (286/286): svt-av1-libs-1.4.1-5.fc40.x86_64.rpm 29 MB/s | 2.0 MB 00:00 -------------------------------------------------------------------------------- Total 44 MB/s | 154 MB 00:03 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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abattis-cantarell-vf-fonts-0.301-12.fc40.noarch annobin-docs-12.52-1.fc41.noarch annobin-plugin-gcc-12.52-1.fc41.x86_64 boost-1.83.0-3.fc40.x86_64 boost-atomic-1.83.0-3.fc40.x86_64 boost-chrono-1.83.0-3.fc40.x86_64 boost-container-1.83.0-3.fc40.x86_64 boost-context-1.83.0-3.fc40.x86_64 boost-contract-1.83.0-3.fc40.x86_64 boost-coroutine-1.83.0-3.fc40.x86_64 boost-date-time-1.83.0-3.fc40.x86_64 boost-devel-1.83.0-3.fc40.x86_64 boost-fiber-1.83.0-3.fc40.x86_64 boost-filesystem-1.83.0-3.fc40.x86_64 boost-graph-1.83.0-3.fc40.x86_64 boost-iostreams-1.83.0-3.fc40.x86_64 boost-json-1.83.0-3.fc40.x86_64 boost-locale-1.83.0-3.fc40.x86_64 boost-log-1.83.0-3.fc40.x86_64 boost-math-1.83.0-3.fc40.x86_64 boost-nowide-1.83.0-3.fc40.x86_64 boost-numpy3-1.83.0-3.fc40.x86_64 boost-program-options-1.83.0-3.fc40.x86_64 boost-python3-1.83.0-3.fc40.x86_64 boost-random-1.83.0-3.fc40.x86_64 boost-regex-1.83.0-3.fc40.x86_64 boost-serialization-1.83.0-3.fc40.x86_64 boost-stacktrace-1.83.0-3.fc40.x86_64 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perl-Capture-Tiny-0.48-20.fc40.noarch perl-Carp-1.54-502.fc40.noarch perl-Class-Data-Inheritable-0.09-8.fc40.noarch perl-Class-Inspector-1.36-16.fc40.noarch perl-Class-Method-Modifiers-2.15-4.fc40.noarch perl-Class-Singleton-1.6-11.fc40.noarch perl-Class-Struct-0.68-507.fc41.noarch perl-Clone-0.46-6.fc40.x86_64 perl-Compress-Raw-Bzip2-2.212-1.fc41.x86_64 perl-Compress-Raw-Zlib-2.212-1.fc41.x86_64 perl-Data-Dumper-2.188-503.fc40.x86_64 perl-Data-OptList-0.114-4.fc40.noarch perl-Date-ISO8601-0.005-20.fc40.noarch perl-DateTime-2:1.65-3.fc40.x86_64 perl-DateTime-Locale-1.42-1.fc41.noarch perl-DateTime-TimeZone-2.62-1.fc40.noarch perl-DateTime-TimeZone-SystemV-0.010-21.fc40.noarch perl-DateTime-TimeZone-Tzfile-0.011-21.fc40.noarch perl-Devel-CallChecker-0.009-5.fc40.x86_64 perl-Devel-Caller-2.07-5.fc40.x86_64 perl-Devel-LexAlias-0.05-36.fc40.x86_64 perl-Devel-StackTrace-1:2.05-3.fc40.noarch perl-Digest-1.20-502.fc40.noarch perl-Digest-MD5-2.59-3.fc40.x86_64 perl-Dist-CheckConflicts-0.11-30.fc40.noarch perl-DynaLoader-1.54-507.fc41.x86_64 perl-DynaLoader-Functions-0.004-4.fc40.noarch perl-Encode-4:3.21-505.fc41.x86_64 perl-Encode-Locale-1.05-29.fc40.noarch perl-English-1.11-507.fc41.noarch perl-Errno-1.37-507.fc41.x86_64 perl-Eval-Closure-0.14-23.fc40.noarch perl-Exception-Class-1.45-10.fc40.noarch perl-Exporter-5.78-3.fc40.noarch perl-Fcntl-1.15-507.fc41.x86_64 perl-File-Basename-2.86-507.fc41.noarch perl-File-Compare-1.100.700-507.fc41.noarch perl-File-Copy-2.41-507.fc41.noarch perl-File-Find-1.43-507.fc41.noarch perl-File-Path-2.18-503.fc40.noarch perl-File-ShareDir-1.118-11.fc40.noarch perl-File-Temp-1:0.231.100-503.fc40.noarch perl-File-stat-1.13-507.fc41.noarch perl-FileHandle-2.05-507.fc41.noarch perl-GD-2.80-1.fc41.x86_64 perl-Getopt-Long-1:2.57-3.fc40.noarch perl-Getopt-Std-1.13-507.fc41.noarch perl-HTML-Parser-3.82-1.fc41.x86_64 perl-HTML-Tagset-3.24-1.fc41.noarch perl-HTTP-Date-6.06-4.fc40.noarch perl-HTTP-Message-6.45-3.fc40.noarch perl-HTTP-Tiny-0.088-5.fc40.noarch perl-Hash-Util-FieldHash-1.26-507.fc41.x86_64 perl-I18N-LangTags-0.45-507.fc41.noarch perl-I18N-Langinfo-0.22-507.fc41.x86_64 perl-IO-1.52-507.fc41.x86_64 perl-IO-Compress-2.212-1.fc41.noarch perl-IO-HTML-1.004-12.fc40.noarch perl-IO-Socket-IP-0.42-2.fc40.noarch perl-IO-Socket-SSL-2.085-1.fc40.noarch perl-IPC-Open3-1.22-507.fc41.noarch perl-JSON-4.10-5.fc40.noarch perl-JSON-XS-1:4.03-13.fc40.x86_64 perl-LWP-MediaTypes-6.04-18.fc41.noarch perl-Locale-Maketext-1.33-503.fc40.noarch perl-Locale-Maketext-Simple-1:0.21-507.fc41.noarch perl-MIME-Base64-3.16-503.fc40.x86_64 perl-MRO-Compat-0.15-9.fc40.noarch perl-Math-BigInt-1:2.0030.02-3.fc40.noarch perl-Math-Complex-1.62-507.fc41.noarch perl-Module-CoreList-1:5.20240420-1.fc41.noarch perl-Module-Implementation-0.09-39.fc40.noarch perl-Module-Load-1:0.36-503.fc40.noarch perl-Module-Load-Conditional-0.74-503.fc40.noarch perl-Module-Metadata-1.000038-5.fc40.noarch perl-Module-Runtime-0.016-22.fc40.noarch perl-Mozilla-CA-20240313-1.fc41.noarch perl-Net-SSLeay-1.94-3.fc40.x86_64 perl-POSIX-2.13-507.fc41.x86_64 perl-Package-Generator-1.106-31.fc40.noarch perl-Package-Stash-0.40-7.fc40.noarch perl-Package-Stash-XS-0.30-7.fc40.x86_64 perl-PadWalker-2.5-13.fc40.x86_64 perl-Params-Check-1:0.38-502.fc40.noarch perl-Params-Classify-0.015-22.fc40.x86_64 perl-Params-Util-1.102-14.fc40.x86_64 perl-Params-ValidationCompiler-0.31-5.fc40.noarch perl-PathTools-3.89-502.fc40.x86_64 perl-Pod-Escapes-1:1.07-503.fc40.noarch perl-Pod-Html-1.34-507.fc41.noarch perl-Pod-Perldoc-3.28.01-503.fc40.noarch perl-Pod-Simple-1:3.45-6.fc40.noarch perl-Pod-Usage-4:2.03-503.fc40.noarch perl-Ref-Util-0.204-20.fc40.noarch perl-Ref-Util-XS-0.117-22.fc40.x86_64 perl-Role-Tiny-2.002004-11.fc40.noarch perl-Scalar-List-Utils-5:1.63-503.fc40.x86_64 perl-SelectSaver-1.02-507.fc41.noarch perl-Socket-4:2.038-1.fc41.x86_64 perl-Specio-0.48-6.fc40.noarch perl-Storable-1:3.32-502.fc40.x86_64 perl-Sub-Exporter-0.991-3.fc40.noarch perl-Sub-Exporter-Progressive-0.001013-24.fc40.noarch perl-Sub-Identify-0.14-26.fc40.x86_64 perl-Sub-Install-0.929-5.fc40.noarch perl-Symbol-1.09-507.fc41.noarch perl-Term-ANSIColor-5.01-504.fc40.noarch perl-Term-Cap-1.18-503.fc40.noarch perl-Text-ParseWords-3.31-502.fc40.noarch perl-Text-Tabs+Wrap-2024.001-1.fc41.noarch perl-Time-HiRes-4:1.9775-502.fc40.x86_64 perl-Time-Local-2:1.350-5.fc40.noarch perl-TimeDate-1:2.33-14.fc40.noarch perl-Try-Tiny-0.31-9.fc40.noarch perl-Types-Serialiser-1.01-11.fc40.noarch perl-URI-5.28-1.fc41.noarch perl-Variable-Magic-0.64-1.fc41.x86_64 perl-XString-0.005-12.fc40.x86_64 perl-base-2.27-507.fc41.noarch perl-common-sense-3.7.5-17.fc40.x86_64 perl-constant-1.33-503.fc40.noarch perl-if-0.61.000-507.fc41.noarch perl-interpreter-4:5.38.2-507.fc41.x86_64 perl-lib-0.65-507.fc41.x86_64 perl-libnet-3.15-503.fc40.noarch perl-libs-4:5.38.2-507.fc41.x86_64 perl-locale-1.10-507.fc41.noarch perl-mro-1.28-507.fc41.x86_64 perl-namespace-autoclean-0.29-18.fc40.noarch perl-namespace-clean-0.27-26.fc40.noarch perl-overload-1.37-507.fc41.noarch perl-overloading-0.02-507.fc41.noarch perl-parent-1:0.241-502.fc40.noarch perl-podlators-1:5.01-502.fc40.noarch perl-vars-1.05-507.fc41.noarch perl-version-8:0.99.32-1.fc41.x86_64 perltidy-20240202-1.fc40.noarch pixman-0.43.4-1.fc41.x86_64 pybind11-devel-2.12.0-1.fc41.x86_64 pyproject-rpm-macros-1.12.0-1.fc40.noarch python-pip-wheel-24.0-2.fc41.noarch python-rpm-macros-3.12-9.fc41.noarch python3-3.12.3-2.fc41.x86_64 python3-cached_property-1.5.2-13.fc40.noarch python3-charset-normalizer-3.3.2-3.fc40.noarch python3-devel-3.12.3-2.fc41.x86_64 python3-h5py-3.11.0-1.fc41.x86_64 python3-idna-3.7-1.fc41.noarch python3-iniconfig-1.1.1-16.fc40.noarch python3-libs-3.12.3-2.fc41.x86_64 python3-numpy-1:1.26.4-3.fc41.x86_64 python3-packaging-24.0-1.fc41.noarch python3-pluggy-1.3.0-3.fc40.noarch python3-pytest-7.4.3-5.fc41.noarch python3-requests-2.31.0-4.fc41.noarch python3-rpm-generators-14-10.fc40.noarch python3-rpm-macros-3.12-9.fc41.noarch python3-setuptools-69.2.0-1.fc41.noarch python3-setuptools_scm-8.0.4-3.fc40.noarch python3-six-1.16.0-14.fc40.noarch python3-typing-extensions-4.11.0-1.fc41.noarch python3-urllib3-1.26.18-3.fc40.noarch rav1e-libs-0.7.1-1.fc40.x86_64 rhash-1.4.4-1.fc41.x86_64 svt-av1-libs-1.4.1-5.fc40.x86_64 tzdata-2024a-5.fc41.noarch vim-filesystem-2:9.1.354-1.fc41.noarch xml-common-0.6.3-63.fc40.noarch zlib-ng-compat-devel-2.1.6-2.fc40.x86_64 Complete! Finish: build setup for morphio-3.3.9-2.fc41.src.rpm Start: rpmbuild morphio-3.3.9-2.fc41.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1713916800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.DGZDGw + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf MorphIO-3.3.9 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/MorphIO-3.3.9.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd MorphIO-3.3.9 + rm -rf /builddir/build/BUILD/MorphIO-3.3.9-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/MorphIO-3.3.9-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/stop-them-using-a-random-env-var.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/remove-upstreams-flags.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/install-python-shared-object.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/stop-setup.py-from-cmake-build.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pytest-float32.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/use-lib_install_dir.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/allow_use_of_external_ghc_filesystem.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/dont_use_cmake_for_finding_ghc_filesystem.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + rm -rvf 3rdparty/GSL_LITE removed directory '3rdparty/GSL_LITE' + sed -r -i /GSL_LITE/d MANIFEST.in + sed -r -i '/director.*\(.*(gsl-lite|GSL_LITE).*\)/d' 3rdparty/CMakeLists.txt + sed -r -i -e /TARGET_PROPERTY:gsl-lite,INTERFACE_INCLUDE_DIRECTORIES/d -e 's/PUBLIC[[:blank:]]+gsl-lite[[:blank:]]+(PRIVATE)/\1/' src/CMakeLists.txt + grep -ErIl '#[[:blank:]]*include[[:blank:]]+["<]gsl/gsl[">]' . + xargs -r sed -r -i 's@(#[[:blank:]]*include[[:blank:]]+["<]gsl/gsl)([">])@\1-lite\.hpp\2@' + rm -rvf 3rdparty/lexertl + ln -s /usr/include/lexertl 3rdparty/ + find . -type f -name .gitignore -print -delete ./.gitignore ./doc/source/doxygen/.gitignore + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.AnoEPg + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.3.9 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.3.9 + SETUPTOOLS_SCM_PRETEND_VERSION=3.3.9 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DEXTERNAL_PYBIND11:BOOL=TRUE -DEXTERNAL_HIGHFIVE:BOOL=TRUE -DEXTERNAL_GHC_FILESYSTEM:BOOL=TRUE -DMORPHIO_USE_DOUBLE:BOOL=TRUE -DBUILD_BINDINGS:BOOL=TRUE -DMorphIO_CXX_WARNINGS:BOOL=FALSE -DMORPHIO_TESTS:BOOL=TRUE -DEXTERNAL_CATCH2:BOOL=TRUE -DMORPHIO_ENABLE_COVERAGE:BOOL=TRUE -DMORPHIO_USE_DOUBLE:BOOL=TRUE -DMORPHIO_VERSION_STRING:STRING=3.3.9 -GNinja -Wno-dev -- The C compiler identification is GNU 14.0.1 -- The CXX compiler identification is GNU 14.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Floating Point Type: double -- HIGHFIVE 2.9.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1") -- Found Boost: /usr/include (found version "1.83.0") found components: system serialization -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12.3", minimum required is "3.6") -- Found PythonLibs: /usr/lib64/libpython3.12.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.12.0") -- Performing Test HAVE_fprofile_abs_path -- Performing Test HAVE_fprofile_abs_path - Success CMake Warning at CMake/CodeCoverage.cmake:206 (message): Code coverage results with an optimised (non-Debug) build may be misleading Call Stack (most recent call first): src/CMakeLists.txt:84 (include) -- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets -- Found Python3: /usr/bin/python3.12 (found version "3.12.3") found components: Interpreter CMake Warning at CMake/CodeCoverage.cmake:206 (message): Code coverage results with an optimised (non-Debug) build may be misleading Call Stack (most recent call first): tests/CMakeLists.txt:42 (include) -- Configuring done (1.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/MorphIO-3.3.9/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j2 --verbose Change Dir: '/builddir/build/BUILD/MorphIO-3.3.9/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 2 [1/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/MorphIO-3.3.9 -I/builddir/build/BUILD/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o -MF src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o -c /builddir/build/BUILD/MorphIO-3.3.9/src/dendritic_spine.cpp [2/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/MorphIO-3.3.9 -I/builddir/build/BUILD/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -MF src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -c /builddir/build/BUILD/MorphIO-3.3.9/src/endoplasmic_reticulum.cpp [3/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/MorphIO-3.3.9 -I/builddir/build/BUILD/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/enums.cpp.o -MF src/CMakeFiles/morphio_obj.dir/enums.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/enums.cpp.o -c /builddir/build/BUILD/MorphIO-3.3.9/src/enums.cpp [4/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/MorphIO-3.3.9 -I/builddir/build/BUILD/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o -MF src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o -c /builddir/build/BUILD/MorphIO-3.3.9/src/errorMessages.cpp [5/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/MorphIO-3.3.9 -I/builddir/build/BUILD/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/collection.cpp.o -MF src/CMakeFiles/morphio_obj.dir/collection.cpp.o.d 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-MT tests/CMakeFiles/unittests.dir/test_properties.cpp.o -MF tests/CMakeFiles/unittests.dir/test_properties.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_properties.cpp.o -c /builddir/build/BUILD/MorphIO-3.3.9/tests/test_properties.cpp [58/62] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMORPHIO_USE_DOUBLE -DMPI_NO_CPPBIND -isystem /builddir/build/BUILD/MorphIO-3.3.9/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -MD -MT tests/CMakeFiles/unittests.dir/test_soma.cpp.o -MF tests/CMakeFiles/unittests.dir/test_soma.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_soma.cpp.o -c /builddir/build/BUILD/MorphIO-3.3.9/tests/test_soma.cpp [59/62] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMORPHIO_USE_DOUBLE -DMPI_NO_CPPBIND -isystem /builddir/build/BUILD/MorphIO-3.3.9/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -MD -MT tests/CMakeFiles/unittests.dir/test_swc_reader.cpp.o -MF tests/CMakeFiles/unittests.dir/test_swc_reader.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_swc_reader.cpp.o -c /builddir/build/BUILD/MorphIO-3.3.9/tests/test_swc_reader.cpp [60/62] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMORPHIO_USE_DOUBLE -DMPI_NO_CPPBIND -isystem /builddir/build/BUILD/MorphIO-3.3.9/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -MD -MT tests/CMakeFiles/unittests.dir/test_utilities.cpp.o -MF tests/CMakeFiles/unittests.dir/test_utilities.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_utilities.cpp.o -c /builddir/build/BUILD/MorphIO-3.3.9/tests/test_utilities.cpp [61/62] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMORPHIO_USE_DOUBLE -DMPI_NO_CPPBIND -isystem /builddir/build/BUILD/MorphIO-3.3.9/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -MD -MT tests/CMakeFiles/unittests.dir/test_vasculature_morphology.cpp.o -MF tests/CMakeFiles/unittests.dir/test_vasculature_morphology.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_vasculature_morphology.cpp.o -c /builddir/build/BUILD/MorphIO-3.3.9/tests/test_vasculature_morphology.cpp [62/62] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic tests/CMakeFiles/unittests.dir/main.cpp.o tests/CMakeFiles/unittests.dir/test_collection.cpp.o tests/CMakeFiles/unittests.dir/test_immutable_morphology.cpp.o tests/CMakeFiles/unittests.dir/test_mitochondria.cpp.o tests/CMakeFiles/unittests.dir/test_morphology_readers.cpp.o tests/CMakeFiles/unittests.dir/test_mutable_morphology.cpp.o tests/CMakeFiles/unittests.dir/test_point_utils.cpp.o tests/CMakeFiles/unittests.dir/test_properties.cpp.o tests/CMakeFiles/unittests.dir/test_soma.cpp.o tests/CMakeFiles/unittests.dir/test_swc_reader.cpp.o tests/CMakeFiles/unittests.dir/test_utilities.cpp.o tests/CMakeFiles/unittests.dir/test_vasculature_morphology.cpp.o -o /builddir/build/BUILD/MorphIO-3.3.9/bin/unittests src/libmorphio_static.a -lstdc++fs -lhdf5 -lgcov && : + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' /usr/lib/python3.12/site-packages/setuptools/__init__.py:81: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' running build running build_py creating build creating build/lib creating build/lib/morphio copying morphio/__init__.py -> build/lib/morphio creating build/lib/morphio/mut copying morphio/mut/__init__.py -> build/lib/morphio/mut creating build/lib/morphio/vasculature copying morphio/vasculature/__init__.py -> build/lib/morphio/vasculature + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.4iC7Oq + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64 ++ dirname /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.3.9 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.3.9 + SETUPTOOLS_SCM_PRETEND_VERSION=3.3.9 + DESTDIR=/builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64 + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "" -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/collection.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/dendritic_spine.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/endoplasmic_reticulum.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/enums.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/errorMessages.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/exceptions.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/glial_cell.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/mito_section.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/mitochondria.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/morphology.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/mut -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/mut/dendritic_spine.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/mut/endoplasmic_reticulum.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/mut/glial_cell.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/mut/mito_section.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/mut/mitochondria.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/mut/modifiers.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/mut/morphology.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/mut/section.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/mut/soma.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/mut/writers.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/properties.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/section.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/section_base.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/section_iterators.hpp -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/soma.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/tools.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/types.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/vasc -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/vasc/iterators.hpp -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/vasc/properties.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/vasc/section.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/vasc/vasculature.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/vector_types.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/version.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/include/morphio/warning_handling.h -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib64/cmake/MorphIO/MorphIOTargets.cmake -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib64/cmake/MorphIO/MorphIOTargets-noconfig.cmake -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib64/cmake/MorphIO/MorphIOConfig.cmake -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib64/libmorphio.so.0.0.0 -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib64/libmorphio.so -- Installing: /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib64/python3.12/site-packages/morphio/_morphio.cpython-312-x86_64-linux-gnu.so + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64 --prefix /usr /usr/lib/python3.12/site-packages/setuptools/__init__.py:81: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' running install /usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib creating /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12 creating /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages creating /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio copying build/lib/morphio/__init__.py -> /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio creating /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio/mut copying build/lib/morphio/mut/__init__.py -> /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio/mut creating /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio/vasculature copying build/lib/morphio/vasculature/__init__.py -> /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio/vasculature byte-compiling /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio/mut/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio/vasculature/__init__.py to __init__.cpython-312.pyc writing byte-compilation script '/tmp/tmpkvoii683.py' /usr/bin/python3 /tmp/tmpkvoii683.py removing /tmp/tmpkvoii683.py running install_egg_info running egg_info creating morphio.egg-info writing morphio.egg-info/PKG-INFO writing dependency_links to morphio.egg-info/dependency_links.txt writing requirements to morphio.egg-info/requires.txt writing top-level names to morphio.egg-info/top_level.txt writing manifest file 'morphio.egg-info/SOURCES.txt' reading manifest file 'morphio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '3rdparty/HighFive/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/HighFive/include' warning: no files found matching '*' under directory '3rdparty/HighFive/CMake' warning: no files found matching '*' under directory '3rdparty/HighFive/doc' warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl' warning: no files found matching '*' under directory 'binds/python/pybind11/include' warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools' warning: no files found matching 'binds/python/pybind11/CMakeLists.txt' warning: no files found matching 'binds/python/pybind11/LICENSE' no previously-included directories found matching 'ci' no previously-included directories found matching 'doc' adding license file 'LICENSE.txt' adding license file 'AUTHORS.txt' no previously-included directories found matching 'scripts' no previously-included directories found matching 'examples' writing manifest file 'morphio.egg-info/SOURCES.txt' Copying morphio.egg-info to /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio-3.3.9-py3.12.egg-info running install_scripts + rm -rfv /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/bin/__pycache__ + '[' /usr/lib/python3.12/site-packages '!=' /usr/lib64/python3.12/site-packages ']' + mv -v /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio/__init__.py /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio/__pycache__ /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio/mut /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio/vasculature /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib64/python3.12/site-packages/morphio renamed '/builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio/__init__.py' -> '/builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib64/python3.12/site-packages/morphio/__init__.py' renamed '/builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio/__pycache__' -> '/builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib64/python3.12/site-packages/morphio/__pycache__' renamed '/builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio/mut' -> '/builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib64/python3.12/site-packages/morphio/mut' renamed '/builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio/vasculature' -> '/builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib64/python3.12/site-packages/morphio/vasculature' + mv -v /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio-3.3.9-py3.12.egg-info /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib64/python3.12/site-packages/ renamed '/builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages/morphio-3.3.9-py3.12.egg-info' -> '/builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib64/python3.12/site-packages/morphio-3.3.9-py3.12.egg-info' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.3.9-2.fc41 --unique-debug-suffix -3.3.9-2.fc41.x86_64 --unique-debug-src-base morphio-3.3.9-2.fc41.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/MorphIO-3.3.9 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/morphio-3.3.9-2.fc41.x86_64 628 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib64/python3.12 using python3.12 Bytecompiling .py files below /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.yHROvc + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.3.9 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.3.9 + SETUPTOOLS_SCM_PRETEND_VERSION=3.3.9 + /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j2 -VV Internal ctest changing into directory: /builddir/build/BUILD/MorphIO-3.3.9/redhat-linux-build UpdateCTestConfiguration from :/builddir/build/BUILD/MorphIO-3.3.9/redhat-linux-build/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/MorphIO-3.3.9/redhat-linux-build/DartConfiguration.tcl Test project /builddir/build/BUILD/MorphIO-3.3.9/redhat-linux-build Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: unittests 1: Test command: /builddir/build/BUILD/MorphIO-3.3.9/bin/unittests 1: Working Directory: /builddir/build/BUILD/MorphIO-3.3.9/tests 1: Test timeout computed to be: 10000000 1: 1: data/single_point_root.asc:0:warning 1: Warning: no soma found in file 1: 1: Warning: section 1 is the only child of section: 0 1: It will be merged with the parent section 1: 1: Warning: section 2 is the only child of section: 0 1: It will be merged with the parent section 1: 1: Warning: section 3 is the only child of section: 0 1: It will be merged with the parent section 1: 1: Warning: Skipping an attempt to write an empty morphology. 1: 1: Warning: writing file without a soma 1: 1: Warning: writing soma set to SOMA_UNDEFINED 1: 1: Soma must be stacked cylinders or a point: see https://github.com/BlueBrain/MorphIO/issues/457 1: 1: Three Point Soma: Only one column has the same coordinates. 1: 1: data/h5/v1/Neuron-no-soma.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/single-neurite.h5:0:warning 1: Warning: no soma found in file 1: 1: data/markers.asc:0:warning 1: Warning: no soma found in file 1: 1: data/annotations.asc:0:warning 1: Warning: no soma found in file 1: 1: Warning: section 1 is the only child of section: 0 1: It will be merged with the parent section 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: =============================================================================== 1: All tests passed (444 assertions in 57 test cases) 1: 1/1 Test #1: unittests ........................ Passed 0.08 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.08 sec ++ basename /builddir/build/BUILD/MorphIO-3.3.9 + xdir=MorphIO-3.3.9 + cd .. + k='not test_v2' + k='not test_v2 and not test_neurolucida_markers' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria and not test_mitochondria_read' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria and not test_mitochondria_read and not test_dendritic_spine_round_trip_empty_postsynaptic_density' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest MorphIO-3.3.9/tests -k 'not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria and not test_mitochondria_read and not test_dendritic_spine_round_trip_empty_postsynaptic_density' -v ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-7.4.3, pluggy-1.3.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/MorphIO-3.3.9 configfile: pyproject.toml collecting ... collected 160 items / 8 deselected / 152 selected MorphIO-3.3.9/tests/test_0_API.py::test_doc_exists PASSED [ 0%] MorphIO-3.3.9/tests/test_0_API.py::test_mut_immut_have_same_methods PASSED [ 1%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_empty_vasculature PASSED [ 1%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_components_vasculature PASSED [ 2%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_section_types PASSED [ 3%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_section_offsets PASSED [ 3%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_section_connectivity PASSED [ 4%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_iterators_vasculature PASSED [ 5%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_from_pathlib PASSED [ 5%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_section___str__ PASSED [ 6%] MorphIO-3.3.9/tests/test_11_collection.py::test_load_from_collection_with_context[collection_path0] PASSED [ 7%] MorphIO-3.3.9/tests/test_11_collection.py::test_load_from_collection_with_context[collection_path1] PASSED [ 7%] MorphIO-3.3.9/tests/test_11_collection.py::test_load_from_collection_without_context[collection_path0] PASSED [ 8%] MorphIO-3.3.9/tests/test_11_collection.py::test_load_from_collection_without_context[collection_path1] PASSED [ 9%] MorphIO-3.3.9/tests/test_11_collection.py::test_container_unordered[collection_path0] PASSED [ 9%] MorphIO-3.3.9/tests/test_11_collection.py::test_container_unordered[collection_path1] PASSED [ 10%] MorphIO-3.3.9/tests/test_11_collection.py::test_container_unordered1[collection_path0] PASSED [ 11%] MorphIO-3.3.9/tests/test_11_collection.py::test_container_unordered1[collection_path1] PASSED [ 11%] MorphIO-3.3.9/tests/test_11_collection.py::test_container_with_warning_handler PASSED [ 12%] MorphIO-3.3.9/tests/test_1_swc.py::test_build_from_string PASSED [ 13%] MorphIO-3.3.9/tests/test_1_swc.py::test_read_single_neurite PASSED [ 13%] MorphIO-3.3.9/tests/test_1_swc.py::test_skip_comments PASSED [ 14%] MorphIO-3.3.9/tests/test_1_swc.py::test_read_simple PASSED [ 15%] MorphIO-3.3.9/tests/test_1_swc.py::test_set_raise_warnings PASSED [ 15%] MorphIO-3.3.9/tests/test_1_swc.py::test_repeated_id PASSED [ 16%] MorphIO-3.3.9/tests/test_1_swc.py::test_neurite_followed_by_soma PASSED [ 17%] MorphIO-3.3.9/tests/test_1_swc.py::test_read_split_soma PASSED [ 17%] MorphIO-3.3.9/tests/test_1_swc.py::test_weird_indent PASSED [ 18%] MorphIO-3.3.9/tests/test_1_swc.py::test_cyclic PASSED [ 19%] MorphIO-3.3.9/tests/test_1_swc.py::test_simple_reversed PASSED [ 19%] MorphIO-3.3.9/tests/test_1_swc.py::test_soma_type_1_point PASSED [ 20%] MorphIO-3.3.9/tests/test_1_swc.py::test_soma_type_2_point PASSED [ 21%] MorphIO-3.3.9/tests/test_1_swc.py::test_soma_type_many_point PASSED [ 21%] MorphIO-3.3.9/tests/test_1_swc.py::test_soma_type_3_point PASSED [ 22%] MorphIO-3.3.9/tests/test_1_swc.py::test_swc_threepoint_soma_tolerance PASSED [ 23%] MorphIO-3.3.9/tests/test_1_swc.py::test_read_weird_ids PASSED [ 23%] MorphIO-3.3.9/tests/test_1_swc.py::test_multiple_soma PASSED [ 24%] MorphIO-3.3.9/tests/test_1_swc.py::test_disconnected_neurite PASSED [ 25%] MorphIO-3.3.9/tests/test_1_swc.py::test_neurite_wrong_root_point PASSED [ 25%] MorphIO-3.3.9/tests/test_1_swc.py::test_read_duplicate PASSED [ 26%] MorphIO-3.3.9/tests/test_1_swc.py::test_unsupported_section_type PASSED [ 26%] MorphIO-3.3.9/tests/test_1_swc.py::test_root_node_split PASSED [ 27%] MorphIO-3.3.9/tests/test_1_swc.py::test_three_point_soma PASSED [ 28%] MorphIO-3.3.9/tests/test_1_swc.py::test_zero_diameter PASSED [ 28%] MorphIO-3.3.9/tests/test_1_swc.py::test_version PASSED [ 29%] MorphIO-3.3.9/tests/test_1_swc.py::test_no_soma PASSED [ 30%] MorphIO-3.3.9/tests/test_1_swc.py::test_WarningHandlerCollector PASSED [ 30%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_soma PASSED [ 31%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_parse_number_with_plus_symbol PASSED [ 32%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_unknown_token PASSED [ 32%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_unfinished_point PASSED [ 33%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_multiple_soma PASSED [ 34%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_single_neurite_no_soma PASSED [ 34%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_skip_header PASSED [ 35%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_read_with_duplicates PASSED [ 36%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_read_without_duplicates PASSED [ 36%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_explicit_duplicates_with_arbitrary_diameter PASSED [ 37%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_unfinished_file PASSED [ 38%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_section_single_point PASSED [ 38%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_single_children PASSED [ 39%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_spine PASSED [ 40%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_single_point_section_duplicate_parent PASSED [ 40%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_single_point_section_duplicate_parent_complex PASSED [ 41%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_spine1 PASSED [ 42%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_markers PASSED [ 42%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_string_markers PASSED [ 43%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_invalid_incomplete PASSED [ 44%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_skip_font PASSED [ 44%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_skip_imagecoord PASSED [ 45%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_Sections_block PASSED [ 46%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_version PASSED [ 46%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_load_from_string PASSED [ 47%] MorphIO-3.3.9/tests/test_3_h5.py::test_v1 PASSED [ 48%] MorphIO-3.3.9/tests/test_3_h5.py::test_wrong_section_type PASSED [ 48%] MorphIO-3.3.9/tests/test_3_h5.py::test_soma_no_neurite PASSED [ 49%] MorphIO-3.3.9/tests/test_3_h5.py::test_single_children PASSED [ 50%] MorphIO-3.3.9/tests/test_4_immut.py::test_heterogeneous_sections PASSED [ 50%] MorphIO-3.3.9/tests/test_4_immut.py::test_components PASSED [ 51%] MorphIO-3.3.9/tests/test_4_immut.py::test_is_root PASSED [ 51%] MorphIO-3.3.9/tests/test_4_immut.py::test_distance PASSED [ 52%] MorphIO-3.3.9/tests/test_4_immut.py::test_iter PASSED [ 53%] MorphIO-3.3.9/tests/test_4_immut.py::test_section_offsets PASSED [ 53%] MorphIO-3.3.9/tests/test_4_immut.py::test_connectivity PASSED [ 54%] MorphIO-3.3.9/tests/test_4_immut.py::test_endoplasmic_reticulum PASSED [ 55%] MorphIO-3.3.9/tests/test_4_immut.py::test_section___str__ PASSED [ 55%] MorphIO-3.3.9/tests/test_4_immut.py::test_section_has_same_shape PASSED [ 56%] MorphIO-3.3.9/tests/test_4_immut.py::test_from_pathlib PASSED [ 57%] MorphIO-3.3.9/tests/test_4_immut.py::test_more_iter PASSED [ 57%] MorphIO-3.3.9/tests/test_4_immut.py::test_glia PASSED [ 58%] MorphIO-3.3.9/tests/test_4_immut.py::test_dendritic_spine PASSED [ 59%] MorphIO-3.3.9/tests/test_4_immut.py::test_dendritic_spine_add_root_section PASSED [ 59%] MorphIO-3.3.9/tests/test_5_mut.py::test_heterogeneous_sections PASSED [ 60%] MorphIO-3.3.9/tests/test_5_mut.py::test_point_level PASSED [ 61%] MorphIO-3.3.9/tests/test_5_mut.py::test_connectivity PASSED [ 61%] MorphIO-3.3.9/tests/test_5_mut.py::test_empty_neurite PASSED [ 62%] MorphIO-3.3.9/tests/test_5_mut.py::test_single_neurite PASSED [ 63%] MorphIO-3.3.9/tests/test_5_mut.py::test_child_section PASSED [ 63%] MorphIO-3.3.9/tests/test_5_mut.py::test_append_no_duplicate PASSED [ 64%] MorphIO-3.3.9/tests/test_5_mut.py::test_mut_copy_ctor PASSED [ 65%] MorphIO-3.3.9/tests/test_5_mut.py::test_build_read_only PASSED [ 65%] MorphIO-3.3.9/tests/test_5_mut.py::test_mutable_immutable_equivalence PASSED [ 66%] MorphIO-3.3.9/tests/test_5_mut.py::test_sections_are_not_dereferenced PASSED [ 67%] MorphIO-3.3.9/tests/test_5_mut.py::test_append_mutable_section PASSED [ 67%] MorphIO-3.3.9/tests/test_5_mut.py::test_iterators PASSED [ 68%] MorphIO-3.3.9/tests/test_5_mut.py::test_non_C_nparray PASSED [ 69%] MorphIO-3.3.9/tests/test_5_mut.py::test_annotation PASSED [ 69%] MorphIO-3.3.9/tests/test_5_mut.py::test_empty_sibling PASSED [ 70%] MorphIO-3.3.9/tests/test_5_mut.py::test_nested_single_child PASSED [ 71%] MorphIO-3.3.9/tests/test_5_mut.py::test_section___str__ PASSED [ 71%] MorphIO-3.3.9/tests/test_5_mut.py::test_from_pathlib PASSED [ 72%] MorphIO-3.3.9/tests/test_5_mut.py::test_endoplasmic_reticulum PASSED [ 73%] MorphIO-3.3.9/tests/test_5_mut.py::test_remove_unifurcations PASSED [ 73%] MorphIO-3.3.9/tests/test_5_mut.py::test_remove_rootsection PASSED [ 74%] MorphIO-3.3.9/tests/test_5_mut.py::test_remove_rootsection_in_loop PASSED [ 75%] MorphIO-3.3.9/tests/test_5_mut.py::test_glia PASSED [ 75%] MorphIO-3.3.9/tests/test_5_mut.py::test_glia_round_trip PASSED [ 76%] MorphIO-3.3.9/tests/test_5_mut.py::test_dendritic_spine PASSED [ 76%] MorphIO-3.3.9/tests/test_5_mut.py::test_dendritic_spine_round_trip PASSED [ 77%] MorphIO-3.3.9/tests/test_5_mut.py::test_lifetime_destroyed_morphology PASSED [ 78%] MorphIO-3.3.9/tests/test_5_mut.py::test_lifetime_access_properties_no_morphology PASSED [ 78%] MorphIO-3.3.9/tests/test_5_mut.py::test_lifetime_copy_single_section PASSED [ 79%] MorphIO-3.3.9/tests/test_5_mut.py::test_lifetime_iteration_fails_with_orphan_section PASSED [ 80%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__maintain_children_order_non_root_section PASSED [ 80%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__maintain_children_order_non_root_section_multiple PASSED [ 81%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__maintain_children_order_root_section PASSED [ 82%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__unifurcation_bridge PASSED [ 82%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__remove_all_children PASSED [ 83%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__append_delete PASSED [ 84%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__traversals PASSED [ 84%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_empty_file PASSED [ 85%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_undefined_soma PASSED [ 86%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_soma_basic PASSED [ 86%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_basic PASSED [ 87%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_merge_only_child_asc_h5 PASSED [ 88%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_merge_only_child_swc PASSED [ 88%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_perimeter PASSED [ 89%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_no_soma PASSED [ 90%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_soma__points_no_diameters PASSED [ 90%] MorphIO-3.3.9/tests/test_6_writers.py::test_duplicate_different_diameter PASSED [ 91%] MorphIO-3.3.9/tests/test_6_writers.py::test_single_point_root_section PASSED [ 92%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_custom_property__throws PASSED [ 92%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_soma_types PASSED [ 93%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_soma_invariants PASSED [ 94%] MorphIO-3.3.9/tests/test_7_modifiers.py::test_no_modifier PASSED [ 94%] MorphIO-3.3.9/tests/test_7_modifiers.py::test_nrn_order PASSED [ 95%] MorphIO-3.3.9/tests/test_7_modifiers.py::test_nrn_order_stability PASSED [ 96%] MorphIO-3.3.9/tests/test_7_modifiers.py::test_two_point_section PASSED [ 96%] MorphIO-3.3.9/tests/test_7_modifiers.py::test_soma_sphere PASSED [ 97%] MorphIO-3.3.9/tests/test_7_modifiers.py::test_no_duplicate PASSED [ 98%] MorphIO-3.3.9/tests/test_8_all_morphologies.py::test_all SKIPPED (ba...) [ 98%] MorphIO-3.3.9/tests/test_9_surfaces.py::test_stacked_cylinder PASSED [ 99%] MorphIO-3.3.9/tests/test_9_surfaces.py::test_contour PASSED [100%] ================= 151 passed, 1 skipped, 8 deselected in 0.85s ================= + RPM_EC=0 ++ jobs -p + exit 0 Processing files: morphio-3.3.9-2.fc41.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.rmDAyR + umask 022 + cd /builddir/build/BUILD + cd MorphIO-3.3.9 + LICENSEDIR=/builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/share/licenses/morphio + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/share/licenses/morphio + cp -pr /builddir/build/BUILD/MorphIO-3.3.9/LICENSE.txt /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/share/licenses/morphio + RPM_EC=0 ++ jobs -p + exit 0 Provides: libmorphio.so.0.0.0()(64bit) morphio = 3.3.9-2.fc41 morphio(x86-64) = 3.3.9-2.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: morphio-devel-3.3.9-2.fc41.x86_64 Provides: cmake(MorphIO) cmake(morphio) morphio-devel = 3.3.9-2.fc41 morphio-devel(x86-64) = 3.3.9-2.fc41 morphio-static = 3.3.9-2.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: cmake-filesystem(x86-64) libmorphio.so.0.0.0()(64bit) Processing files: python3-morphio-3.3.9-2.fc41.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.qctozk + umask 022 + cd /builddir/build/BUILD + cd MorphIO-3.3.9 + LICENSEDIR=/builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/share/licenses/python3-morphio + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/share/licenses/python3-morphio + cp -pr /builddir/build/BUILD/MorphIO-3.3.9/LICENSE.txt /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/share/licenses/python3-morphio + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-morphio = 3.3.9-2.fc41 python3-morphio = 3.3.9-2.fc41 python3-morphio(x86-64) = 3.3.9-2.fc41 python3.12-morphio = 3.3.9-2.fc41 python3.12dist(morphio) = 3.3.9 python3dist(morphio) = 3.3.9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.12 python3.12dist(numpy) >= 1.14.1 rtld(GNU_HASH) Processing files: morphio-doc-3.3.9-2.fc41.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.E2AELO + umask 022 + cd /builddir/build/BUILD + cd MorphIO-3.3.9 + DOCDIR=/builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/share/doc/morphio-doc + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/MorphIO-3.3.9/AUTHORS.txt /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/MorphIO-3.3.9/CHANGELOG.md /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/MorphIO-3.3.9/CONTRIBUTING.md /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/MorphIO-3.3.9/README.rst /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/MorphIO-3.3.9/examples /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/share/doc/morphio-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.XNihks + umask 022 + cd /builddir/build/BUILD + cd MorphIO-3.3.9 + LICENSEDIR=/builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/share/licenses/morphio-doc + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/share/licenses/morphio-doc + cp -pr /builddir/build/BUILD/MorphIO-3.3.9/LICENSE.txt /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64/usr/share/licenses/morphio-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: morphio-doc = 3.3.9-2.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: morphio-debugsource-3.3.9-2.fc41.x86_64 Provides: morphio-debugsource = 3.3.9-2.fc41 morphio-debugsource(x86-64) = 3.3.9-2.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: morphio-debuginfo-3.3.9-2.fc41.x86_64 Provides: debuginfo(build-id) = d191b155ae54036e476cf12f26baebb61675b085 libmorphio.so.0.0.0-3.3.9-2.fc41.x86_64.debug()(64bit) morphio-debuginfo = 3.3.9-2.fc41 morphio-debuginfo(x86-64) = 3.3.9-2.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: morphio-debugsource(x86-64) = 3.3.9-2.fc41 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64 Wrote: /builddir/build/RPMS/python3-morphio-3.3.9-2.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-3.3.9-2.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-debugsource-3.3.9-2.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-devel-3.3.9-2.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-doc-3.3.9-2.fc41.noarch.rpm Wrote: /builddir/build/RPMS/morphio-debuginfo-3.3.9-2.fc41.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.gVoYRe + umask 022 + cd /builddir/build/BUILD + cd MorphIO-3.3.9 + /usr/bin/rm -rf /builddir/build/BUILDROOT/morphio-3.3.9-2.fc41.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.FXMvIn + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/MorphIO-3.3.9-SPECPARTS + rm -rf MorphIO-3.3.9 MorphIO-3.3.9.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild morphio-3.3.9-2.fc41.src.rpm Finish: build phase for morphio-3.3.9-2.fc41.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1714927132.211660/root/var/log/dnf.log /var/lib/mock/fedora-39-x86_64-1714927132.211660/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1714927132.211660/root/var/log/dnf.rpm.log INFO: Done(/var/lib/copr-rpmbuild/results/morphio-3.3.9-2.fc41.src.rpm) Config(child) 3 minutes 46 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "morphio-debuginfo", "epoch": null, "version": "3.3.9", "release": "2.fc41", "arch": "x86_64" }, { "name": "morphio", "epoch": null, "version": "3.3.9", "release": "2.fc41", "arch": "x86_64" }, { "name": "python3-morphio", "epoch": null, "version": "3.3.9", "release": "2.fc41", "arch": "x86_64" }, { "name": "morphio", "epoch": null, "version": "3.3.9", "release": "2.fc41", "arch": "src" }, { "name": "morphio-devel", "epoch": null, "version": "3.3.9", "release": "2.fc41", "arch": "x86_64" }, { "name": "morphio-doc", "epoch": null, "version": "3.3.9", "release": "2.fc41", "arch": "noarch" }, { "name": "morphio-debugsource", "epoch": null, "version": "3.3.9", "release": "2.fc41", "arch": "x86_64" } ] } RPMResults finished