Warning: Permanently added '54.226.226.246' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7377906-fedora-40-aarch64 --chroot fedora-40-aarch64 Version: 0.72 PID: 6601 Logging PID: 6602 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7377906, 'buildroot_pkgs': [], 'chroot': 'fedora-40-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'b492991e1f7f9ea51e8c9f958b58eea7b8bd658d', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Rhtslib', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-Rhtslib', 'package_version': '2.4.1-1', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-40-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/iucar', 'tags': [], 'task_id': '7377906-fedora-40-aarch64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Rhtslib /var/lib/copr-rpmbuild/workspace/workdir-8jqbtpjr/R-Rhtslib --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Rhtslib', '/var/lib/copr-rpmbuild/workspace/workdir-8jqbtpjr/R-Rhtslib', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-8jqbtpjr/R-Rhtslib'... Running: git checkout b492991e1f7f9ea51e8c9f958b58eea7b8bd658d -- cmd: ['git', 'checkout', 'b492991e1f7f9ea51e8c9f958b58eea7b8bd658d', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-8jqbtpjr/R-Rhtslib rc: 0 stdout: stderr: Note: switching to 'b492991e1f7f9ea51e8c9f958b58eea7b8bd658d'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at b492991 automatic import of R-Rhtslib Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-8jqbtpjr/R-Rhtslib rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Rhtslib_2.4.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o Rhtslib_2.4.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/R-Rhtslib/Rhtslib_2.4.1.tar.gz/md5/b7d295a694e865f4f4060c94c4bca446/Rhtslib_2.4.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated 100 4474k 100 4474k 0 0 142M 0 --:--:-- --:--:-- --:--:-- 145M INFO: Reading stdout from command: md5sum Rhtslib_2.4.1.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-8jqbtpjr/R-Rhtslib/R-Rhtslib.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-8jqbtpjr/R-Rhtslib --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714171571.083350 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-8jqbtpjr/R-Rhtslib/R-Rhtslib.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-8jqbtpjr/R-Rhtslib --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714171571.083350 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-8jqbtpjr/R-Rhtslib/R-Rhtslib.spec) Config(fedora-40-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 5.5 INFO: Mock Version: 5.5 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-aarch64-bootstrap-1714171571.083350/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:40 INFO: Pulling image: registry.fedoraproject.org/fedora:40 INFO: Copy content of container registry.fedoraproject.org/fedora:40 to /var/lib/mock/fedora-40-aarch64-bootstrap-1714171571.083350/root INFO: Checking that registry.fedoraproject.org/fedora:40 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:40 with podman image mount INFO: image registry.fedoraproject.org/fedora:40 as /var/lib/containers/storage/overlay/bb5c993f4d43eb77a5aaa8b9e08d4e30f366d35721e52624f5f5c726c4f1db79/merged INFO: umounting image registry.fedoraproject.org/fedora:40 (/var/lib/containers/storage/overlay/bb5c993f4d43eb77a5aaa8b9e08d4e30f366d35721e52624f5f5c726c4f1db79/merged) with podman image umount INFO: Using 'dnf' instead of 'dnf5' for bootstrap chroot INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf5 tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 45 MB/s | 3.1 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 59 MB/s | 17 MB 00:00 fedora 28 MB/s | 19 MB 00:00 updates 20 MB/s | 2.9 MB 00:00 Last metadata expiration check: 0:00:01 ago on Fri Apr 26 22:46:25 2024. Dependencies resolved. =========================================================================================================== Package Arch Version Repository Size =========================================================================================================== Installing: dnf5 aarch64 5.1.17-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 642 k dnf5-plugins aarch64 5.1.17-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 329 k Installing dependencies: fmt aarch64 10.2.1-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121 k libdnf5 aarch64 5.1.17-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 912 k libdnf5-cli aarch64 5.1.17-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 219 k sdbus-cpp aarch64 1.5.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103 k systemd-libs aarch64 255.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694 k Transaction Summary =========================================================================================================== Install 7 Packages Total download size: 2.9 M Installed size: 9.9 M Downloading Packages: (1/7): fmt-10.2.1-4.fc41.aarch64.rpm 1.2 MB/s | 121 kB 00:00 (2/7): dnf5-plugins-5.1.17-1.fc41.aarch64.rpm 3.2 MB/s | 329 kB 00:00 (3/7): libdnf5-cli-5.1.17-1.fc41.aarch64.rpm 8.2 MB/s | 219 kB 00:00 (4/7): dnf5-5.1.17-1.fc41.aarch64.rpm 4.4 MB/s | 642 kB 00:00 (5/7): sdbus-cpp-1.5.0-2.fc41.aarch64.rpm 3.7 MB/s | 103 kB 00:00 (6/7): libdnf5-5.1.17-1.fc41.aarch64.rpm 15 MB/s | 912 kB 00:00 (7/7): systemd-libs-255.5-1.fc41.aarch64.rpm 21 MB/s | 694 kB 00:00 -------------------------------------------------------------------------------- Total 17 MB/s | 2.9 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : fmt-10.2.1-4.fc41.aarch64 1/7 Installing : libdnf5-5.1.17-1.fc41.aarch64 2/7 Installing : libdnf5-cli-5.1.17-1.fc41.aarch64 3/7 Installing : systemd-libs-255.5-1.fc41.aarch64 4/7 Installing : sdbus-cpp-1.5.0-2.fc41.aarch64 5/7 Installing : dnf5-5.1.17-1.fc41.aarch64 6/7 Installing : dnf5-plugins-5.1.17-1.fc41.aarch64 7/7 Running scriptlet: dnf5-plugins-5.1.17-1.fc41.aarch64 7/7 Installed: dnf5-5.1.17-1.fc41.aarch64 dnf5-plugins-5.1.17-1.fc41.aarch64 fmt-10.2.1-4.fc41.aarch64 libdnf5-5.1.17-1.fc41.aarch64 libdnf5-cli-5.1.17-1.fc41.aarch64 sdbus-cpp-1.5.0-2.fc41.aarch64 systemd-libs-255.5-1.fc41.aarch64 Complete! INFO: Switching package manager from dnf to the dnf5 (direct choice) Finish(bootstrap): installing dnf5 tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-aarch64-1714171571.083350/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc40.aarch64 rpm-sequoia-1.6.0-2.fc40.aarch64 python3-dnf-4.19.2-1.fc40.noarch yum-4.19.2-1.fc40.noarch dnf5-5.1.17-1.fc41.aarch64 dnf5-plugins-5.1.17-1.fc41.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 25.8 MiB/s | 19.9 MiB | 00m01s updates 100% | 15.9 MiB/s | 3.2 MiB | 00m00s Copr repository 100% | 53.8 MiB/s | 3.1 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 50.1 MiB/s | 17.2 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 5.2.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.3 MiB bzip2 aarch64 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 427.5 KiB coreutils aarch64 9.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20.7 MiB cpio aarch64 2.15-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB diffutils aarch64 3.10-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB fedora-release-common noarch 41-0.9 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19.2 KiB findutils aarch64 1:4.9.0-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB gawk aarch64 5.3.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.2 MiB glibc-minimal-langpack aarch64 2.39.9000-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B grep aarch64 3.11-7.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB gzip aarch64 1.13-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 488.8 KiB info aarch64 7.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 613.5 KiB patch aarch64 2.7.6-24.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 390.5 KiB redhat-rpm-config noarch 288-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183.3 KiB rpm-build aarch64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB sed aarch64 4.9-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB shadow-utils aarch64 2:4.15.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.3 MiB tar aarch64 2:1.35-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.1 MiB unzip aarch64 6.0-63.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 726.4 KiB util-linux aarch64 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17.5 MiB which aarch64 2.21-41.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 248.1 KiB xz aarch64 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB Installing dependencies: alternatives aarch64 1.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 218.2 KiB ansible-srpm-macros noarch 1-15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.7 KiB audit-libs aarch64 4.0.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 547.2 KiB authselect aarch64 1.5.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 309.4 KiB authselect-libs aarch64 1.5.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 931.8 KiB basesystem noarch 11-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B binutils aarch64 2.42.50-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 33.4 MiB binutils-gold aarch64 2.42.50-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.1 MiB bzip2-libs aarch64 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 200.7 KiB ca-certificates noarch 2023.2.62_v7.0.401-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB coreutils-common aarch64 9.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.2 MiB cracklib aarch64 2.9.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 934.6 KiB crypto-policies noarch 20240320-1.git58e3d95.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 119.2 KiB curl aarch64 8.7.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 886.0 KiB cyrus-sasl-lib aarch64 2.1.28-19.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.1 MiB debugedit aarch64 5.0-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 498.8 KiB dwz aarch64 0.15-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 386.7 KiB ed aarch64 1.20.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 282.7 KiB efi-srpm-macros noarch 5-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 KiB elfutils aarch64 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.0 MiB elfutils-debuginfod-client aarch64 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 396.7 KiB elfutils-default-yama-scope noarch 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB elfutils-libelf aarch64 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 MiB elfutils-libs aarch64 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB fedora-gpg-keys noarch 41-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 125.0 KiB fedora-release noarch 41-0.9 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B fedora-release-identity-basic noarch 41-0.9 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0 B fedora-repos noarch 41-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 KiB fedora-repos-rawhide noarch 41-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 KiB file aarch64 5.45-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 267.4 KiB file-libs aarch64 5.45-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.0 MiB filesystem aarch64 3.18-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.0 B fonts-srpm-macros noarch 1:2.0.5-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55.3 KiB forge-srpm-macros noarch 0.3.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.0 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam aarch64 1.6.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.0 MiB pam-libs aarch64 1.6.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 607.0 KiB pcre2 aarch64 10.43-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 905.3 KiB pcre2-syntax noarch 10.43-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 249.0 KiB perl-srpm-macros noarch 1-53.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf aarch64 2.1.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 238.3 KiB pkgconf-m4 noarch 2.1.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13.9 KiB pkgconf-pkg-config aarch64 2.1.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 990.0 B popt aarch64 1.19-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 272.8 KiB publicsuffix-list-dafsa noarch 20240107-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.12.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 KiB python-srpm-macros noarch 3.12-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 50.5 KiB qt5-srpm-macros noarch 5.15.13-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 492.0 B qt6-srpm-macros noarch 6.7.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline aarch64 8.2-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 689.1 KiB rpm aarch64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.0 MiB rpm-build-libs aarch64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 262.4 KiB rpm-libs aarch64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.6 KiB rpm-sequoia aarch64 1.6.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB rust-srpm-macros noarch 26.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.14.5-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.4 KiB sqlite-libs aarch64 3.45.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB systemd-libs aarch64 255.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB util-linux-core aarch64 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.2 MiB xxhash-libs aarch64 0.8.2-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 212.2 KiB xz-libs aarch64 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 265.6 KiB zig-srpm-macros noarch 1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip aarch64 3.0-40.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB zlib-ng-compat aarch64 2.1.6-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 261.7 KiB zstd aarch64 1.5.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 52 MiB. Need to download 52 MiB. After this operation 307 MiB will be used (install 307 MiB, remove 0 B). [ 1/153] bzip2-0:1.0.8-18.fc40.aarch64 100% | 599.9 KiB/s | 52.2 KiB | 00m00s [ 2/153] cpio-0:2.15-1.fc40.aarch64 100% | 5.1 MiB/s | 284.8 KiB | 00m00s [ 3/153] coreutils-0:9.5-1.fc41.aarch6 100% | 7.3 MiB/s | 1.1 MiB | 00m00s [ 4/153] bash-0:5.2.26-3.fc40.aarch64 100% | 10.8 MiB/s | 1.8 MiB | 00m00s [ 5/153] diffutils-0:3.10-5.fc40.aarch 100% | 11.7 MiB/s | 395.3 KiB | 00m00s [ 6/153] fedora-release-common-0:41-0. 100% | 1.0 MiB/s | 21.5 KiB | 00m00s [ 7/153] findutils-1:4.9.0-8.fc40.aarc 100% | 15.9 MiB/s | 489.1 KiB | 00m00s [ 8/153] glibc-minimal-langpack-0:2.39 100% | 5.4 MiB/s | 110.0 KiB | 00m00s [ 9/153] grep-0:3.11-7.fc40.aarch64 100% | 13.4 MiB/s | 287.9 KiB | 00m00s [ 10/153] gawk-0:5.3.0-3.fc40.aarch64 100% | 24.4 MiB/s | 1.0 MiB | 00m00s [ 11/153] gzip-0:1.13-1.fc40.aarch64 100% | 7.2 MiB/s | 163.1 KiB | 00m00s [ 12/153] info-0:7.1-2.fc40.aarch64 100% | 9.9 MiB/s | 183.1 KiB | 00m00s [ 13/153] redhat-rpm-config-0:288-1.fc4 100% | 4.1 MiB/s | 75.3 KiB | 00m00s [ 14/153] patch-0:2.7.6-24.fc40.aarch64 100% | 6.3 MiB/s | 129.5 KiB | 00m00s [ 15/153] rpm-build-0:4.19.1.1-1.fc40.a 100% | 3.3 MiB/s | 71.8 KiB | 00m00s [ 16/153] sed-0:4.9-1.fc40.aarch64 100% | 15.0 MiB/s | 306.6 KiB | 00m00s [ 17/153] shadow-utils-2:4.15.1-2.fc41. 100% | 36.1 MiB/s | 1.3 MiB | 00m00s [ 18/153] unzip-0:6.0-63.fc40.aarch64 100% | 8.6 MiB/s | 185.0 KiB | 00m00s [ 19/153] tar-2:1.35-3.fc40.aarch64 100% | 23.7 MiB/s | 848.3 KiB | 00m00s [ 20/153] which-0:2.21-41.fc40.aarch64 100% | 2.1 MiB/s | 41.6 KiB | 00m00s [ 21/153] util-linux-0:2.40-13.fc41.aar 100% | 26.8 MiB/s | 1.2 MiB | 00m00s [ 22/153] xz-1:5.4.6-3.fc41.aarch64 100% | 16.3 MiB/s | 532.6 KiB | 00m00s [ 23/153] coreutils-common-0:9.5-1.fc41 100% | 61.6 MiB/s | 2.1 MiB | 00m00s [ 24/153] fedora-repos-0:41-0.1.noarch 100% | 519.1 KiB/s | 9.3 KiB | 00m00s [ 25/153] glibc-common-0:2.39.9000-16.f 100% | 18.0 MiB/s | 387.3 KiB | 00m00s [ 26/153] libblkid-0:2.40-13.fc41.aarch 100% | 6.1 MiB/s | 125.8 KiB | 00m00s [ 27/153] libfdisk-0:2.40-13.fc41.aarch 100% | 8.1 MiB/s | 157.3 KiB | 00m00s [ 28/153] libmount-0:2.40-13.fc41.aarch 100% | 7.5 MiB/s | 154.5 KiB | 00m00s [ 29/153] glibc-0:2.39.9000-16.fc41.aar 100% | 27.6 MiB/s | 1.9 MiB | 00m00s [ 30/153] libsmartcols-0:2.40-13.fc41.a 100% | 3.8 MiB/s | 82.7 KiB | 00m00s [ 31/153] libuuid-0:2.40-13.fc41.aarch6 100% | 1.5 MiB/s | 28.5 KiB | 00m00s [ 32/153] xz-libs-1:5.4.6-3.fc41.aarch6 100% | 5.9 MiB/s | 108.5 KiB | 00m00s [ 33/153] fedora-gpg-keys-0:41-0.1.noar 100% | 6.2 MiB/s | 121.0 KiB | 00m00s [ 34/153] util-linux-core-0:2.40-13.fc4 100% | 16.3 MiB/s | 518.7 KiB | 00m00s [ 35/153] fedora-repos-rawhide-0:41-0.1 100% | 495.7 KiB/s | 8.9 KiB | 00m00s [ 36/153] libselinux-0:3.6-4.fc40.aarch 100% | 4.3 MiB/s | 87.9 KiB | 00m00s [ 37/153] glibc-gconv-extra-0:2.39.9000 100% | 64.1 MiB/s | 2.0 MiB | 00m00s [ 38/153] libxcrypt-0:4.4.36-5.fc40.aar 100% | 6.3 MiB/s | 123.3 KiB | 00m00s [ 39/153] ncurses-libs-0:6.4-12.2024012 100% | 16.9 MiB/s | 329.1 KiB | 00m00s [ 40/153] audit-libs-0:4.0.1-1.fc41.aar 100% | 6.5 MiB/s | 126.3 KiB | 00m00s [ 41/153] systemd-libs-0:255.5-1.fc41.a 100% | 22.6 MiB/s | 694.0 KiB | 00m00s [ 42/153] authselect-libs-0:1.5.0-5.fc4 100% | 10.5 MiB/s | 205.1 KiB | 00m00s [ 43/153] libcap-ng-0:0.8.5-1.fc41.aarc 100% | 1.8 MiB/s | 32.5 KiB | 00m00s [ 44/153] libutempter-0:1.2.1-13.fc40.a 100% | 1.5 MiB/s | 26.8 KiB | 00m00s [ 45/153] authselect-0:1.5.0-5.fc41.aar 100% | 7.2 MiB/s | 141.0 KiB | 00m00s [ 46/153] pam-0:1.6.1-1.fc41.aarch64 100% | 17.1 MiB/s | 526.6 KiB | 00m00s [ 47/153] pam-libs-0:1.6.1-1.fc41.aarch 100% | 2.9 MiB/s | 57.1 KiB | 00m00s [ 48/153] readline-0:8.2-8.fc40.aarch64 100% | 10.4 MiB/s | 213.5 KiB | 00m00s [ 49/153] zlib-ng-compat-0:2.1.6-2.fc40 100% | 3.6 MiB/s | 66.3 KiB | 00m00s [ 50/153] bzip2-libs-0:1.0.8-18.fc40.aa 100% | 2.3 MiB/s | 42.7 KiB | 00m00s [ 51/153] libacl-0:2.3.2-1.fc40.aarch64 100% | 1.3 MiB/s | 24.7 KiB | 00m00s [ 52/153] libgcc-0:14.0.1-0.15.fc41.aar 100% | 5.1 MiB/s | 109.2 KiB | 00m00s [ 53/153] libcap-0:2.69-8.fc41.aarch64 100% | 3.5 MiB/s | 86.9 KiB | 00m00s [ 54/153] libzstd-0:1.5.6-1.fc41.aarch6 100% | 14.7 MiB/s | 286.6 KiB | 00m00s [ 55/153] lz4-libs-0:1.9.4-6.fc40.aarch 100% | 3.3 MiB/s | 67.6 KiB | 00m00s [ 56/153] libattr-0:2.5.2-3.fc40.aarch6 100% | 819.1 KiB/s | 18.0 KiB | 00m00s [ 57/153] libeconf-0:0.6.2-1.fc41.aarch 100% | 1.7 MiB/s | 32.1 KiB | 00m00s [ 58/153] setup-0:2.14.5-2.fc40.noarch 100% | 7.6 MiB/s | 148.1 KiB | 00m00s [ 59/153] libsemanage-0:3.6-3.fc40.aarc 100% | 5.1 MiB/s | 114.9 KiB | 00m00s [ 60/153] debugedit-0:5.0-14.fc40.aarch 100% | 3.5 MiB/s | 78.5 KiB | 00m00s [ 61/153] binutils-0:2.42.50-6.fc41.aar 100% | 121.6 MiB/s | 6.8 MiB | 00m00s [ 62/153] binutils-gold-0:2.42.50-6.fc4 100% | 21.5 MiB/s | 968.2 KiB | 00m00s [ 63/153] elfutils-0:0.191-7.fc41.aarch 100% | 16.6 MiB/s | 561.5 KiB | 00m00s [ 64/153] elfutils-debuginfod-client-0: 100% | 1.8 MiB/s | 37.8 KiB | 00m00s [ 65/153] elfutils-libelf-0:0.191-7.fc4 100% | 10.2 MiB/s | 208.9 KiB | 00m00s [ 66/153] elfutils-libs-0:0.191-7.fc41. 100% | 9.9 MiB/s | 263.8 KiB | 00m00s [ 67/153] file-0:5.45-5.fc41.aarch64 100% | 1.9 MiB/s | 49.6 KiB | 00m00s [ 68/153] file-libs-0:5.45-5.fc41.aarch 100% | 24.0 MiB/s | 763.1 KiB | 00m00s [ 69/153] pkgconf-pkg-config-0:2.1.0-1. 100% | 484.6 KiB/s | 9.7 KiB | 00m00s [ 70/153] popt-0:1.19-6.fc40.aarch64 100% | 3.2 MiB/s | 59.6 KiB | 00m00s [ 71/153] rpm-0:4.19.1.1-1.fc40.aarch64 100% | 24.8 MiB/s | 508.4 KiB | 00m00s [ 72/153] rpm-build-libs-0:4.19.1.1-1.f 100% | 4.7 MiB/s | 91.8 KiB | 00m00s [ 73/153] rpm-libs-0:4.19.1.1-1.fc40.aa 100% | 15.7 MiB/s | 306.0 KiB | 00m00s [ 74/153] zstd-0:1.5.6-1.fc41.aarch64 100% | 21.2 MiB/s | 456.8 KiB | 00m00s [ 75/153] curl-0:8.7.1-1.fc41.aarch64 100% | 15.7 MiB/s | 306.4 KiB | 00m00s [ 76/153] libarchive-0:3.7.2-3.fc41.aar 100% | 19.8 MiB/s | 404.7 KiB | 00m00s [ 77/153] ansible-srpm-macros-0:1-15.fc 100% | 1.0 MiB/s | 20.9 KiB | 00m00s [ 78/153] dwz-0:0.15-6.fc40.aarch64 100% | 7.4 MiB/s | 136.6 KiB | 00m00s [ 79/153] efi-srpm-macros-0:5-11.fc40.n 100% | 1.2 MiB/s | 22.3 KiB | 00m00s [ 80/153] fonts-srpm-macros-1:2.0.5-14. 100% | 1.4 MiB/s | 26.5 KiB | 00m00s [ 81/153] forge-srpm-macros-0:0.3.1-1.f 100% | 1.1 MiB/s | 19.4 KiB | 00m00s [ 82/153] fpc-srpm-macros-0:1.3-12.fc40 100% | 435.2 KiB/s | 7.8 KiB | 00m00s [ 83/153] gnat-srpm-macros-0:6-5.fc40.n 100% | 519.0 KiB/s | 8.8 KiB | 00m00s [ 84/153] ghc-srpm-macros-0:1.9.1-1.fc4 100% | 498.3 KiB/s | 9.0 KiB | 00m00s [ 85/153] go-srpm-macros-0:3.6.0-1.fc41 100% | 1.5 MiB/s | 27.9 KiB | 00m00s [ 86/153] kernel-srpm-macros-0:1.0-23.f 100% | 542.4 KiB/s | 9.8 KiB | 00m00s [ 87/153] lua-srpm-macros-0:1-13.fc40.n 100% | 485.0 KiB/s | 8.7 KiB | 00m00s [ 88/153] ocaml-srpm-macros-0:9-3.fc40. 100% | 504.1 KiB/s | 9.1 KiB | 00m00s [ 89/153] openblas-srpm-macros-0:2-17.f 100% | 425.6 KiB/s | 7.7 KiB | 00m00s [ 90/153] package-notes-srpm-macros-0:0 100% | 552.5 KiB/s | 9.9 KiB | 00m00s [ 91/153] perl-srpm-macros-0:1-53.fc40. 100% | 493.0 KiB/s | 8.4 KiB | 00m00s [ 92/153] pyproject-srpm-macros-0:1.12. 100% | 757.2 KiB/s | 13.6 KiB | 00m00s [ 93/153] python-srpm-macros-0:3.12-9.f 100% | 1.3 MiB/s | 24.0 KiB | 00m00s [ 94/153] qt5-srpm-macros-0:5.15.13-1.f 100% | 471.0 KiB/s | 8.5 KiB | 00m00s [ 95/153] qt6-srpm-macros-0:6.7.0-1.fc4 100% | 498.4 KiB/s | 9.0 KiB | 00m00s [ 96/153] rust-srpm-macros-0:26.2-1.fc4 100% | 661.2 KiB/s | 12.6 KiB | 00m00s [ 97/153] zig-srpm-macros-0:1-2.fc40.no 100% | 382.8 KiB/s | 8.0 KiB | 00m00s [ 98/153] zip-0:3.0-40.fc40.aarch64 100% | 12.9 MiB/s | 263.3 KiB | 00m00s [ 99/153] pkgconf-0:2.1.0-1.fc40.aarch6 100% | 2.2 MiB/s | 43.5 KiB | 00m00s [100/153] pkgconf-m4-0:2.1.0-1.fc40.noa 100% | 773.5 KiB/s | 13.9 KiB | 00m00s [101/153] libpkgconf-0:2.1.0-1.fc40.aar 100% | 1.9 MiB/s | 38.4 KiB | 00m00s [102/153] ed-0:1.20.2-1.fc41.aarch64 100% | 4.0 MiB/s | 81.3 KiB | 00m00s [103/153] gdbm-1:1.23-6.fc40.aarch64 100% | 7.7 MiB/s | 148.9 KiB | 00m00s [104/153] libnsl2-0:2.0.1-1.fc40.aarch6 100% | 1.6 MiB/s | 29.9 KiB | 00m00s [105/153] gdbm-libs-1:1.23-6.fc40.aarch 100% | 2.9 MiB/s | 56.5 KiB | 00m00s [106/153] libpwquality-0:1.4.5-9.fc40.a 100% | 5.6 MiB/s | 108.9 KiB | 00m00s [107/153] libtirpc-0:1.3.4-1.rc3.fc41.a 100% | 4.8 MiB/s | 94.1 KiB | 00m00s [108/153] ca-certificates-0:2023.2.62_v 100% | 36.6 MiB/s | 862.1 KiB | 00m00s [109/153] crypto-policies-0:20240320-1. 100% | 3.5 MiB/s | 64.9 KiB | 00m00s [110/153] ncurses-base-0:6.4-12.2024012 100% | 3.5 MiB/s | 63.8 KiB | 00m00s [111/153] libcom_err-0:1.47.0-5.fc40.aa 100% | 1.4 MiB/s | 25.5 KiB | 00m00s [112/153] krb5-libs-0:1.21.2-5.fc40.aar 100% | 23.4 MiB/s | 767.9 KiB | 00m00s [113/153] openssl-libs-1:3.2.1-6.fc41.a 100% | 28.8 MiB/s | 2.2 MiB | 00m00s [114/153] libsepol-0:3.6-3.fc40.aarch64 100% | 16.8 MiB/s | 326.7 KiB | 00m00s [115/153] pcre2-0:10.43-1.fc41.aarch64 100% | 11.1 MiB/s | 226.4 KiB | 00m00s [116/153] pcre2-syntax-0:10.43-1.fc41.n 100% | 7.6 MiB/s | 148.8 KiB | 00m00s [117/153] cracklib-0:2.9.11-5.fc40.aarc 100% | 4.3 MiB/s | 83.0 KiB | 00m00s [118/153] keyutils-libs-0:1.6.3-3.fc40. 100% | 1.7 MiB/s | 31.6 KiB | 00m00s [119/153] libxml2-0:2.12.6-1.fc41.aarch 100% | 21.6 MiB/s | 686.7 KiB | 00m00s [120/153] libverto-0:0.3.2-8.fc40.aarch 100% | 1.1 MiB/s | 20.7 KiB | 00m00s [121/153] basesystem-0:11-20.fc40.noarc 100% | 378.3 KiB/s | 7.2 KiB | 00m00s [122/153] gmp-1:6.3.0-1.fc41.aarch64 100% | 13.2 MiB/s | 270.0 KiB | 00m00s [123/153] mpfr-0:4.2.1-3.fc40.aarch64 100% | 15.8 MiB/s | 324.2 KiB | 00m00s [124/153] filesystem-0:3.18-9.fc41.aarc 100% | 24.9 MiB/s | 1.1 MiB | 00m00s [125/153] elfutils-default-yama-scope-0 100% | 702.6 KiB/s | 13.3 KiB | 00m00s [126/153] p11-kit-trust-0:0.25.3-4.fc40 100% | 6.9 MiB/s | 141.8 KiB | 00m00s [127/153] libstdc++-0:14.0.1-0.15.fc41. 100% | 25.2 MiB/s | 825.5 KiB | 00m00s [128/153] p11-kit-0:0.25.3-4.fc40.aarch 100% | 14.8 MiB/s | 485.5 KiB | 00m00s [129/153] jansson-0:2.13.1-9.fc40.aarch 100% | 2.5 MiB/s | 45.8 KiB | 00m00s [130/153] alternatives-0:1.26-3.fc40.aa 100% | 2.1 MiB/s | 38.8 KiB | 00m00s [131/153] lua-libs-0:5.4.6-5.fc40.aarch 100% | 7.1 MiB/s | 131.5 KiB | 00m00s [132/153] sqlite-libs-0:3.45.2-1.fc41.a 100% | 32.8 MiB/s | 705.8 KiB | 00m00s [133/153] rpm-sequoia-0:1.6.0-2.fc40.aa 100% | 24.9 MiB/s | 817.3 KiB | 00m00s [134/153] libgomp-0:14.0.1-0.15.fc41.aa 100% | 15.6 MiB/s | 336.4 KiB | 00m00s [135/153] libtasn1-0:4.19.0-6.fc40.aarc 100% | 3.8 MiB/s | 73.1 KiB | 00m00s [136/153] libffi-0:3.4.6-1.fc41.aarch64 100% | 2.1 MiB/s | 38.2 KiB | 00m00s [137/153] fedora-release-0:41-0.9.noarc 100% | 611.6 KiB/s | 11.0 KiB | 00m00s [138/153] fedora-release-identity-basic 100% | 655.6 KiB/s | 11.8 KiB | 00m00s [139/153] libcurl-0:8.7.1-1.fc41.aarch6 100% | 17.1 MiB/s | 349.9 KiB | 00m00s [140/153] libnghttp2-0:1.61.0-1.fc41.aa 100% | 4.0 MiB/s | 77.0 KiB | 00m00s [141/153] gdb-minimal-0:14.2-5.fc41.aar 100% | 77.9 MiB/s | 4.1 MiB | 00m00s [142/153] xxhash-libs-0:0.8.2-2.fc40.aa 100% | 1.5 MiB/s | 34.3 KiB | 00m00s [143/153] libbrotli-0:1.1.0-3.fc40.aarc 100% | 16.9 MiB/s | 345.7 KiB | 00m00s [144/153] libpsl-0:0.21.5-3.fc40.aarch6 100% | 3.3 MiB/s | 64.2 KiB | 00m00s [145/153] libidn2-0:2.3.7-1.fc40.aarch6 100% | 5.8 MiB/s | 112.8 KiB | 00m00s [146/153] libssh-0:0.10.6-6.fc41.aarch6 100% | 10.4 MiB/s | 214.0 KiB | 00m00s [147/153] libssh-config-0:0.10.6-6.fc41 100% | 507.6 KiB/s | 9.1 KiB | 00m00s [148/153] openldap-0:2.6.7-1.fc40.aarch 100% | 13.0 MiB/s | 252.4 KiB | 00m00s [149/153] libevent-0:2.1.12-12.fc40.aar 100% | 12.5 MiB/s | 255.2 KiB | 00m00s [150/153] libtool-ltdl-0:2.4.7-10.fc40. 100% | 1.9 MiB/s | 36.3 KiB | 00m00s [151/153] cyrus-sasl-lib-0:2.1.28-19.fc 100% | 23.8 MiB/s | 778.7 KiB | 00m00s [152/153] publicsuffix-list-dafsa-0:202 100% | 2.8 MiB/s | 58.1 KiB | 00m00s [153/153] libunistring-0:1.1-7.fc41.aar 100% | 24.1 MiB/s | 543.6 KiB | 00m00s -------------------------------------------------------------------------------- [153/153] Total 100% | 39.6 MiB/s | 52.4 MiB | 00m01s Running transaction [ 1/155] Verify package files 100% | 721.0 B/s | 153.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-9.fc41.aarch64 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-9.fc41.aarch64 [ 2/155] Prepare transaction 100% | 2.5 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:14.0.1-0. 100% | 171.8 MiB/s | 351.9 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.0.1-0.15.fc41.aarch64 >>> Stop post-install scriptlet: libgcc-0:14.0.1-0.15.fc41.aarch64 [ 4/155] Installing crypto-policies-0: 100% | 17.8 MiB/s | 146.2 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20240320-1.git58e3d95.fc41 >>> Stop post-install scriptlet: crypto-policies-0:20240320-1.git58e3d95.fc41.no [ 5/155] Installing fedora-release-ide 100% | 0.0 B/s | 952.0 B | 00m00s [ 6/155] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 7/155] Installing fedora-gpg-keys-0: 100% | 27.7 MiB/s | 170.1 KiB | 00m00s [ 8/155] Installing fedora-repos-0:41- 100% | 5.6 MiB/s | 5.7 KiB | 00m00s [ 9/155] Installing fedora-release-com 100% | 22.7 MiB/s | 23.3 KiB | 00m00s [ 10/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 11/155] Installing setup-0:2.14.5-2.f 100% | 47.3 MiB/s | 725.8 KiB | 00m00s >>> Running post-install scriptlet: setup-0:2.14.5-2.fc40.noarch >>> Stop post-install scriptlet: setup-0:2.14.5-2.fc40.noarch [ 12/155] Installing filesystem-0:3.18- 100% | 2.2 MiB/s | 212.5 KiB | 00m00s [ 13/155] Installing basesystem-0:11-20 100% | 0.0 B/s | 124.0 B | 00m00s [ 14/155] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 15/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 16/155] Installing pcre2-syntax-0:10. 100% | 122.8 MiB/s | 251.5 KiB | 00m00s [ 17/155] Installing ncurses-base-0:6.4 100% | 49.1 MiB/s | 351.6 KiB | 00m00s [ 18/155] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 19/155] Installing ncurses-libs-0:6.4 100% | 280.9 MiB/s | 2.2 MiB | 00m00s >>> Running pre-install scriptlet: glibc-0:2.39.9000-16.fc41.aarch64 >>> Stop pre-install scriptlet: glibc-0:2.39.9000-16.fc41.aarch64 [ 20/155] Installing glibc-0:2.39.9000- 100% | 234.2 MiB/s | 9.8 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.39.9000-16.fc41.aarch64 >>> Stop post-install scriptlet: glibc-0:2.39.9000-16.fc41.aarch64 [ 21/155] Installing bash-0:5.2.26-3.fc 100% | 286.6 MiB/s | 8.3 MiB | 00m00s >>> Running post-install scriptlet: bash-0:5.2.26-3.fc40.aarch64 >>> Stop post-install scriptlet: bash-0:5.2.26-3.fc40.aarch64 [ 22/155] Installing glibc-common-0:2.3 100% | 285.5 MiB/s | 2.6 MiB | 00m00s [ 23/155] Installing glibc-gconv-extra- 100% | 510.9 MiB/s | 49.0 MiB | 00m00s >>> Running post-install scriptlet: glibc-gconv-extra-0:2.39.9000-16.fc41.aarch6 >>> Stop post-install scriptlet: glibc-gconv-extra-0:2.39.9000-16.fc41.aarch64 [ 24/155] Installing zlib-ng-compat-0:2 100% | 256.4 MiB/s | 262.5 KiB | 00m00s [ 25/155] Installing xz-libs-1:5.4.6-3. 100% | 260.5 MiB/s | 266.8 KiB | 00m00s [ 26/155] Installing bzip2-libs-0:1.0.8 100% | 197.0 MiB/s | 201.8 KiB | 00m00s [ 27/155] Installing libuuid-0:2.40-13. 100% | 193.7 MiB/s | 198.3 KiB | 00m00s [ 28/155] Installing readline-0:8.2-8.f 100% | 225.0 MiB/s | 691.2 KiB | 00m00s [ 29/155] Installing libzstd-0:1.5.6-1. 100% | 259.5 MiB/s | 797.2 KiB | 00m00s [ 30/155] Installing elfutils-libelf-0: 100% | 262.8 MiB/s | 1.3 MiB | 00m00s [ 31/155] Installing popt-0:1.19-6.fc40 100% | 68.2 MiB/s | 279.4 KiB | 00m00s [ 32/155] Installing libstdc++-0:14.0.1 100% | 277.0 MiB/s | 2.8 MiB | 00m00s [ 33/155] Installing libblkid-0:2.40-13 100% | 204.9 MiB/s | 419.6 KiB | 00m00s [ 34/155] Installing libxcrypt-0:4.4.36 100% | 196.1 MiB/s | 401.6 KiB | 00m00s [ 35/155] Installing libattr-0:2.5.2-3. 100% | 192.8 MiB/s | 197.4 KiB | 00m00s [ 36/155] Installing libacl-0:2.3.2-1.f 100% | 192.2 MiB/s | 196.8 KiB | 00m00s [ 37/155] Installing gmp-1:6.3.0-1.fc41 100% | 235.7 MiB/s | 724.2 KiB | 00m00s [ 38/155] Installing lz4-libs-0:1.9.4-6 100% | 256.3 MiB/s | 262.5 KiB | 00m00s [ 39/155] Installing libeconf-0:0.6.2-1 100% | 202.8 MiB/s | 207.6 KiB | 00m00s [ 40/155] Installing gdbm-libs-1:1.23-6 100% | 208.7 MiB/s | 427.5 KiB | 00m00s [ 41/155] Installing mpfr-0:4.2.1-3.fc4 100% | 267.0 MiB/s | 820.2 KiB | 00m00s [ 42/155] Installing gawk-0:5.3.0-3.fc4 100% | 355.2 MiB/s | 4.3 MiB | 00m00s [ 43/155] Installing dwz-0:0.15-6.fc40. 100% | 189.5 MiB/s | 388.1 KiB | 00m00s [ 44/155] Installing unzip-0:6.0-63.fc4 100% | 237.6 MiB/s | 729.8 KiB | 00m00s [ 45/155] Installing file-libs-0:5.45-5 100% | 527.6 MiB/s | 10.0 MiB | 00m00s [ 46/155] Installing file-0:5.45-5.fc41 100% | 262.6 MiB/s | 268.9 KiB | 00m00s [ 47/155] Installing libsmartcols-0:2.4 100% | 282.8 MiB/s | 289.6 KiB | 00m00s [ 48/155] Installing libcap-ng-0:0.8.5- 100% | 409.1 MiB/s | 418.9 KiB | 00m00s [ 49/155] Installing audit-libs-0:4.0.1 100% | 268.2 MiB/s | 549.4 KiB | 00m00s [ 50/155] Installing pam-libs-0:1.6.1-1 100% | 297.6 MiB/s | 609.4 KiB | 00m00s [ 51/155] Installing libcap-0:2.69-8.fc 100% | 343.7 MiB/s | 1.4 MiB | 00m00s [ 52/155] Installing systemd-libs-0:255 100% | 307.0 MiB/s | 2.5 MiB | 00m00s [ 53/155] Installing libcom_err-0:1.47. 100% | 234.7 MiB/s | 240.3 KiB | 00m00s [ 54/155] Installing libsepol-0:3.6-3.f 100% | 284.8 MiB/s | 874.9 KiB | 00m00s [ 55/155] Installing pcre2-0:10.43-1.fc 100% | 295.2 MiB/s | 906.7 KiB | 00m00s [ 56/155] Installing libselinux-0:3.6-4 100% | 130.0 MiB/s | 266.3 KiB | 00m00s [ 57/155] Installing sed-0:4.9-1.fc40.a 100% | 164.3 MiB/s | 1.0 MiB | 00m00s [ 58/155] Installing grep-0:3.11-7.fc40 100% | 156.7 MiB/s | 1.1 MiB | 00m00s [ 59/155] Installing findutils-1:4.9.0- 100% | 184.6 MiB/s | 1.7 MiB | 00m00s [ 60/155] Installing xz-1:5.4.6-3.fc41. 100% | 190.3 MiB/s | 2.3 MiB | 00m00s [ 61/155] Installing libmount-0:2.40-13 100% | 236.8 MiB/s | 485.0 KiB | 00m00s [ 62/155] Installing jansson-0:2.13.1-9 100% | 216.5 MiB/s | 221.7 KiB | 00m00s [ 63/155] Installing alternatives-0:1.2 100% | 214.7 MiB/s | 219.9 KiB | 00m00s [ 64/155] Installing lua-libs-0:5.4.6-5 100% | 192.5 MiB/s | 394.2 KiB | 00m00s [ 65/155] Installing libtasn1-0:4.19.0- 100% | 139.4 MiB/s | 285.5 KiB | 00m00s [ 66/155] Installing libunistring-0:1.1 100% | 311.9 MiB/s | 1.9 MiB | 00m00s [ 67/155] Installing libidn2-0:2.3.7-1. 100% | 113.0 MiB/s | 463.0 KiB | 00m00s [ 68/155] Installing libpsl-0:0.21.5-3. 100% | 193.0 MiB/s | 197.6 KiB | 00m00s [ 69/155] Installing util-linux-core-0: 100% | 387.4 MiB/s | 6.2 MiB | 00m00s [ 70/155] Installing tar-2:1.35-3.fc40. 100% | 255.6 MiB/s | 3.1 MiB | 00m00s [ 71/155] Installing libsemanage-0:3.6- 100% | 118.2 MiB/s | 363.2 KiB | 00m00s [ 72/155] Installing shadow-utils-2:4.1 100% | 160.4 MiB/s | 7.4 MiB | 00m00s >>> Running pre-install scriptlet: libutempter-0:1.2.1-13.fc40.aarch64 >>> Stop pre-install scriptlet: libutempter-0:1.2.1-13.fc40.aarch64 [ 73/155] Installing libutempter-0:1.2. 100% | 204.9 MiB/s | 419.6 KiB | 00m00s [ 74/155] Installing zip-0:3.0-40.fc40. 100% | 281.0 MiB/s | 1.1 MiB | 00m00s [ 75/155] Installing gdbm-1:1.23-6.fc40 100% | 227.8 MiB/s | 933.2 KiB | 00m00s [ 76/155] Installing cyrus-sasl-lib-0:2 100% | 282.4 MiB/s | 3.1 MiB | 00m00s [ 77/155] Installing zstd-0:1.5.6-1.fc4 100% | 313.2 MiB/s | 1.6 MiB | 00m00s [ 78/155] Installing libfdisk-0:2.40-13 100% | 236.2 MiB/s | 483.8 KiB | 00m00s [ 79/155] Installing bzip2-0:1.0.8-18.f 100% | 210.9 MiB/s | 432.0 KiB | 00m00s [ 80/155] Installing libxml2-0:2.12.6-1 100% | 314.8 MiB/s | 2.2 MiB | 00m00s [ 81/155] Installing sqlite-libs-0:3.45 100% | 249.3 MiB/s | 1.5 MiB | 00m00s [ 82/155] Installing ed-0:1.20.2-1.fc41 100% | 139.2 MiB/s | 285.0 KiB | 00m00s [ 83/155] Installing patch-0:2.7.6-24.f 100% | 191.4 MiB/s | 392.0 KiB | 00m00s [ 84/155] Installing elfutils-default-y 100% | 291.9 KiB/s | 2.0 KiB | 00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-7.fc41.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-7.fc41.noar [ 85/155] Installing cpio-0:2.15-1.fc40 100% | 174.4 MiB/s | 1.2 MiB | 00m00s [ 86/155] Installing diffutils-0:3.10-5 100% | 234.3 MiB/s | 2.1 MiB | 00m00s [ 87/155] Installing libpkgconf-0:2.1.0 100% | 194.5 MiB/s | 199.1 KiB | 00m00s [ 88/155] Installing pkgconf-0:2.1.0-1. 100% | 235.2 MiB/s | 240.8 KiB | 00m00s [ 89/155] Installing keyutils-libs-0:1. 100% | 222.4 MiB/s | 227.8 KiB | 00m00s [ 90/155] Installing libverto-0:0.3.2-8 100% | 194.6 MiB/s | 199.2 KiB | 00m00s [ 91/155] Installing libgomp-0:14.0.1-0 100% | 277.5 MiB/s | 568.3 KiB | 00m00s [ 92/155] Installing libffi-0:3.4.6-1.f 100% | 277.1 MiB/s | 283.7 KiB | 00m00s [ 93/155] Installing p11-kit-0:0.25.3-4 100% | 202.3 MiB/s | 2.8 MiB | 00m00s [ 94/155] Installing p11-kit-trust-0:0. 100% | 64.2 MiB/s | 657.2 KiB | 00m00s >>> Running post-install scriptlet: p11-kit-trust-0:0.25.3-4.fc40.aarch64 >>> Stop post-install scriptlet: p11-kit-trust-0:0.25.3-4.fc40.aarch64 [ 95/155] Installing libnghttp2-0:1.61. 100% | 128.5 MiB/s | 263.2 KiB | 00m00s [ 96/155] Installing xxhash-libs-0:0.8. 100% | 208.6 MiB/s | 213.6 KiB | 00m00s [ 97/155] Installing libbrotli-0:1.1.0- 100% | 228.1 MiB/s | 1.1 MiB | 00m00s [ 98/155] Installing libtool-ltdl-0:2.4 100% | 218.0 MiB/s | 223.3 KiB | 00m00s [ 99/155] Installing pkgconf-m4-0:2.1.0 100% | 0.0 B/s | 14.3 KiB | 00m00s [100/155] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s [101/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [102/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [103/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 768.0 B | 00m00s [104/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [105/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [106/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [107/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [108/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [109/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [110/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [111/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [112/155] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [113/155] Installing coreutils-common-0 100% | 272.9 MiB/s | 11.2 MiB | 00m00s [114/155] Installing openssl-libs-1:3.2 100% | 323.9 MiB/s | 7.8 MiB | 00m00s [115/155] Installing coreutils-0:9.5-1. 100% | 433.1 MiB/s | 20.8 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.n >>> Stop pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noar [116/155] Installing ca-certificates-0: 100% | 2.3 MiB/s | 2.3 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40. >>> Stop post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noa [117/155] Installing krb5-libs-0:1.21.2 100% | 262.0 MiB/s | 3.4 MiB | 00m00s [118/155] Installing libtirpc-0:1.3.4-1 100% | 135.0 MiB/s | 276.4 KiB | 00m00s [119/155] Installing gzip-0:1.13-1.fc40 100% | 160.9 MiB/s | 494.3 KiB | 00m00s [120/155] Installing authselect-libs-0: 100% | 115.6 MiB/s | 946.7 KiB | 00m00s [121/155] Installing libarchive-0:3.7.2 100% | 254.0 MiB/s | 1.0 MiB | 00m00s [122/155] Installing authselect-0:1.5.0 100% | 102.1 MiB/s | 313.8 KiB | 00m00s [123/155] Installing cracklib-0:2.9.11- 100% | 132.0 MiB/s | 946.0 KiB | 00m00s [124/155] Installing libpwquality-0:1.4 100% | 158.2 MiB/s | 1.1 MiB | 00m00s [125/155] Installing libnsl2-0:2.0.1-1. 100% | 217.8 MiB/s | 223.0 KiB | 00m00s [126/155] Installing pam-0:1.6.1-1.fc41 100% | 344.8 MiB/s | 11.0 MiB | 00m00s [127/155] Installing libssh-0:0.10.6-6. 100% | 189.9 MiB/s | 583.3 KiB | 00m00s [128/155] Installing rpm-sequoia-0:1.6. 100% | 278.7 MiB/s | 2.2 MiB | 00m00s [129/155] Installing rpm-libs-0:4.19.1. 100% | 210.7 MiB/s | 863.2 KiB | 00m00s [130/155] Installing libevent-0:2.1.12- 100% | 304.6 MiB/s | 1.5 MiB | 00m00s [131/155] Installing openldap-0:2.6.7-1 100% | 248.7 MiB/s | 1.0 MiB | 00m00s [132/155] Installing libcurl-0:8.7.1-1. 100% | 300.3 MiB/s | 922.4 KiB | 00m00s [133/155] Installing elfutils-libs-0:0. 100% | 245.1 MiB/s | 1.0 MiB | 00m00s [134/155] Installing elfutils-debuginfo 100% | 194.7 MiB/s | 398.7 KiB | 00m00s [135/155] Installing binutils-gold-0:2. 100% | 170.7 MiB/s | 3.1 MiB | 00m00s >>> Running post-install scriptlet: binutils-gold-0:2.42.50-6.fc41.aarch64 >>> Stop post-install scriptlet: binutils-gold-0:2.42.50-6.fc41.aarch64 [136/155] Installing binutils-0:2.42.50 100% | 315.8 MiB/s | 33.5 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.42.50-6.fc41.aarch64 >>> Stop post-install scriptlet: binutils-0:2.42.50-6.fc41.aarch64 [137/155] Installing elfutils-0:0.191-7 100% | 334.4 MiB/s | 5.0 MiB | 00m00s [138/155] Installing gdb-minimal-0:14.2 100% | 310.2 MiB/s | 12.7 MiB | 00m00s [139/155] Installing debugedit-0:5.0-14 100% | 244.9 MiB/s | 501.5 KiB | 00m00s [140/155] Installing rpm-build-libs-0:4 100% | 257.0 MiB/s | 263.2 KiB | 00m00s [141/155] Installing curl-0:8.7.1-1.fc4 100% | 66.7 MiB/s | 888.5 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.aarch64 >>> Stop pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.aarch64 [142/155] Installing rpm-0:4.19.1.1-1.f 100% | 137.4 MiB/s | 3.4 MiB | 00m00s [143/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [144/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [145/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [146/155] Installing fonts-srpm-macros- 100% | 55.1 MiB/s | 56.5 KiB | 00m00s [147/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.3 KiB | 00m00s [148/155] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [149/155] Installing python-srpm-macros 100% | 50.5 MiB/s | 51.7 KiB | 00m00s [150/155] Installing redhat-rpm-config- 100% | 61.8 MiB/s | 189.7 KiB | 00m00s [151/155] Installing rpm-build-0:4.19.1 100% | 301.1 MiB/s | 1.2 MiB | 00m00s [152/155] Installing pyproject-srpm-mac 100% | 2.0 MiB/s | 2.1 KiB | 00m00s [153/155] Installing util-linux-0:2.40- 100% | 337.1 MiB/s | 17.5 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40-13.fc41.aarch64 >>> Stop post-install scriptlet: util-linux-0:2.40-13.fc41.aarch64 [154/155] Installing which-0:2.21-41.fc 100% | 122.2 MiB/s | 250.3 KiB | 00m00s [155/155] Installing info-0:7.1-2.fc40. 100% | 488.4 KiB/s | 613.9 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-9.fc41.aarch64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-9.fc41.aarch64 >>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.f >>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc41.aarch64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc41.aarch64 >>> Running post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.aarch64 >>> Stop post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.aarch64 >>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-16.fc41.aarch64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-16.fc41.aarch64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.aarch64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.aarch64 Warning: skipped PGP checks for 153 package(s). Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-3.fc40.aarch64 ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-1.fc41.aarch64 authselect-1.5.0-5.fc41.aarch64 authselect-libs-1.5.0-5.fc41.aarch64 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.aarch64 binutils-2.42.50-6.fc41.aarch64 binutils-gold-2.42.50-6.fc41.aarch64 bzip2-1.0.8-18.fc40.aarch64 bzip2-libs-1.0.8-18.fc40.aarch64 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.5-1.fc41.aarch64 coreutils-common-9.5-1.fc41.aarch64 cpio-2.15-1.fc40.aarch64 cracklib-2.9.11-5.fc40.aarch64 crypto-policies-20240320-1.git58e3d95.fc41.noarch curl-8.7.1-1.fc41.aarch64 cyrus-sasl-lib-2.1.28-19.fc40.aarch64 debugedit-5.0-14.fc40.aarch64 diffutils-3.10-5.fc40.aarch64 dwz-0.15-6.fc40.aarch64 ed-1.20.2-1.fc41.aarch64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-7.fc41.aarch64 elfutils-debuginfod-client-0.191-7.fc41.aarch64 elfutils-default-yama-scope-0.191-7.fc41.noarch elfutils-libelf-0.191-7.fc41.aarch64 elfutils-libs-0.191-7.fc41.aarch64 fedora-gpg-keys-41-0.1.noarch fedora-release-41-0.9.noarch fedora-release-common-41-0.9.noarch fedora-release-identity-basic-41-0.9.noarch fedora-repos-41-0.1.noarch fedora-repos-rawhide-41-0.1.noarch file-5.45-5.fc41.aarch64 file-libs-5.45-5.fc41.aarch64 filesystem-3.18-9.fc41.aarch64 findutils-4.9.0-8.fc40.aarch64 fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.aarch64 gdb-minimal-14.2-5.fc41.aarch64 gdbm-1.23-6.fc40.aarch64 gdbm-libs-1.23-6.fc40.aarch64 ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-16.fc41.aarch64 glibc-common-2.39.9000-16.fc41.aarch64 glibc-gconv-extra-2.39.9000-16.fc41.aarch64 glibc-minimal-langpack-2.39.9000-16.fc41.aarch64 gmp-6.3.0-1.fc41.aarch64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-7.fc40.aarch64 gzip-1.13-1.fc40.aarch64 info-7.1-2.fc40.aarch64 jansson-2.13.1-9.fc40.aarch64 kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.aarch64 krb5-libs-1.21.2-5.fc40.aarch64 libacl-2.3.2-1.fc40.aarch64 libarchive-3.7.2-3.fc41.aarch64 libattr-2.5.2-3.fc40.aarch64 libblkid-2.40-13.fc41.aarch64 libbrotli-1.1.0-3.fc40.aarch64 libcap-2.69-8.fc41.aarch64 libcap-ng-0.8.5-1.fc41.aarch64 libcom_err-1.47.0-5.fc40.aarch64 libcurl-8.7.1-1.fc41.aarch64 libeconf-0.6.2-1.fc41.aarch64 libevent-2.1.12-12.fc40.aarch64 libfdisk-2.40-13.fc41.aarch64 libffi-3.4.6-1.fc41.aarch64 libgcc-14.0.1-0.15.fc41.aarch64 libgomp-14.0.1-0.15.fc41.aarch64 libidn2-2.3.7-1.fc40.aarch64 libmount-2.40-13.fc41.aarch64 libnghttp2-1.61.0-1.fc41.aarch64 libnsl2-2.0.1-1.fc40.aarch64 libpkgconf-2.1.0-1.fc40.aarch64 libpsl-0.21.5-3.fc40.aarch64 libpwquality-1.4.5-9.fc40.aarch64 libselinux-3.6-4.fc40.aarch64 libsemanage-3.6-3.fc40.aarch64 libsepol-3.6-3.fc40.aarch64 libsmartcols-2.40-13.fc41.aarch64 libssh-0.10.6-6.fc41.aarch64 libssh-config-0.10.6-6.fc41.noarch libstdc++-14.0.1-0.15.fc41.aarch64 libtasn1-4.19.0-6.fc40.aarch64 libtirpc-1.3.4-1.rc3.fc41.aarch64 libtool-ltdl-2.4.7-10.fc40.aarch64 libunistring-1.1-7.fc41.aarch64 libutempter-1.2.1-13.fc40.aarch64 libuuid-2.40-13.fc41.aarch64 libverto-0.3.2-8.fc40.aarch64 libxcrypt-4.4.36-5.fc40.aarch64 libxml2-2.12.6-1.fc41.aarch64 libzstd-1.5.6-1.fc41.aarch64 lua-libs-5.4.6-5.fc40.aarch64 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.aarch64 mpfr-4.2.1-3.fc40.aarch64 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.aarch64 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.7-1.fc40.aarch64 openssl-libs-3.2.1-6.fc41.aarch64 p11-kit-0.25.3-4.fc40.aarch64 p11-kit-trust-0.25.3-4.fc40.aarch64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-1.fc41.aarch64 pam-libs-1.6.1-1.fc41.aarch64 patch-2.7.6-24.fc40.aarch64 pcre2-10.43-1.fc41.aarch64 pcre2-syntax-10.43-1.fc41.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.0-1.fc40.aarch64 pkgconf-m4-2.1.0-1.fc40.noarch pkgconf-pkg-config-2.1.0-1.fc40.aarch64 popt-1.19-6.fc40.aarch64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-9.fc41.noarch qt5-srpm-macros-5.15.13-1.fc41.noarch qt6-srpm-macros-6.7.0-1.fc41.noarch readline-8.2-8.fc40.aarch64 redhat-rpm-config-288-1.fc41.noarch rpm-4.19.1.1-1.fc40.aarch64 rpm-build-4.19.1.1-1.fc40.aarch64 rpm-build-libs-4.19.1.1-1.fc40.aarch64 rpm-libs-4.19.1.1-1.fc40.aarch64 rpm-sequoia-1.6.0-2.fc40.aarch64 rust-srpm-macros-26.2-1.fc41.noarch sed-4.9-1.fc40.aarch64 setup-2.14.5-2.fc40.noarch shadow-utils-4.15.1-2.fc41.aarch64 sqlite-libs-3.45.2-1.fc41.aarch64 systemd-libs-255.5-1.fc41.aarch64 tar-1.35-3.fc40.aarch64 unzip-6.0-63.fc40.aarch64 util-linux-2.40-13.fc41.aarch64 util-linux-core-2.40-13.fc41.aarch64 which-2.21-41.fc40.aarch64 xxhash-libs-0.8.2-2.fc40.aarch64 xz-5.4.6-3.fc41.aarch64 xz-libs-5.4.6-3.fc41.aarch64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.aarch64 zlib-ng-compat-2.1.6-2.fc40.aarch64 zstd-1.5.6-1.fc41.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1714089600 Wrote: /builddir/build/SRPMS/R-Rhtslib-2.4.1-1.fc41.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-40-aarch64-1714171571.083350/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-40-aarch64-1714171571.083350/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-8jqbtpjr/R-Rhtslib/R-Rhtslib.spec) Config(child) 0 minutes 40 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-Rhtslib-2.4.1-1.fc41.src.rpm) Config(fedora-40-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-aarch64-bootstrap-1714171571.083350/root. INFO: reusing tmpfs at /var/lib/mock/fedora-40-aarch64-bootstrap-1714171571.083350/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-aarch64-1714171571.083350/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc40.aarch64 rpm-sequoia-1.6.0-2.fc40.aarch64 python3-dnf-4.19.2-1.fc40.noarch yum-4.19.2-1.fc40.noarch dnf5-5.1.17-1.fc41.aarch64 dnf5-plugins-5.1.17-1.fc41.aarch64 Finish: chroot init Start: build phase for R-Rhtslib-2.4.1-1.fc41.src.rpm Start: build setup for R-Rhtslib-2.4.1-1.fc41.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1714089600 Wrote: /builddir/build/SRPMS/R-Rhtslib-2.4.1-1.fc41.src.rpm Updating and loading repositories: fedora 100% | 136.8 KiB/s | 13.0 KiB | 00m00s updates 100% | 129.6 KiB/s | 12.2 KiB | 00m00s Copr repository 100% | 109.8 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 100.6 KiB/s | 4.1 KiB | 00m00s Repositories loaded. 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB tzdata-java noarch 2024a-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101.7 KiB xdg-utils noarch 1.2.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 346.3 KiB xml-common noarch 0.6.3-63.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB xorg-x11-fonts-Type1 noarch 7.5-38.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 863.3 KiB xorg-x11-proto-devel noarch 2024.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Transaction Summary: Installing: 159 packages Total size of inbound packages is 265 MiB. Need to download 265 MiB. After this operation 916 MiB will be used (install 916 MiB, remove 0 B). [ 1/159] R-devel-0:4.4.0-1.fc41~bootst 100% | 465.7 KiB/s | 10.7 KiB | 00m00s [ 2/159] xz-devel-1:5.4.6-3.fc41.aarch 100% | 1.1 MiB/s | 62.2 KiB | 00m00s [ 3/159] zlib-ng-compat-devel-0:2.1.6- 100% | 1.2 MiB/s | 36.1 KiB | 00m00s [ 4/159] R-core-devel-0:4.4.0-1.fc41~b 100% | 28.7 MiB/s | 88.1 KiB | 00m00s [ 5/159] R-java-devel-0:4.4.0-1.fc41~b 100% | 5.3 MiB/s | 10.8 KiB | 00m00s [ 6/159] bzip2-devel-0:1.0.8-18.fc40.a 100% | 1.7 MiB/s | 213.5 KiB | 00m00s [ 7/159] libRmath-devel-0:4.4.0-1.fc41 100% | 5.3 MiB/s | 16.3 KiB | 00m00s [ 8/159] R-java-0:4.4.0-1.fc41~bootstr 100% | 3.7 MiB/s | 11.3 KiB | 00m00s [ 9/159] libRmath-0:4.4.0-1.fc41~boots 100% | 38.1 MiB/s | 117.1 KiB | 00m00s [ 10/159] libcurl-devel-0:8.7.1-1.fc41. 100% | 4.6 MiB/s | 755.8 KiB | 00m00s [ 11/159] R-core-0:4.4.0-1.fc41~bootstr 100% | 275.2 MiB/s | 62.5 MiB | 00m00s [ 12/159] gcc-gfortran-0:14.0.1-0.15.fc 100% | 54.6 MiB/s | 12.1 MiB | 00m00s [ 13/159] gcc-c++-0:14.0.1-0.15.fc41.aa 100% | 53.3 MiB/s | 12.8 MiB | 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graphite2-devel-0:1.3.14-15.f 100% | 5.2 MiB/s | 21.1 KiB | 00m00s [104/159] libXi-0:1.8.1-5.fc40.aarch64 100% | 1.2 MiB/s | 39.6 KiB | 00m00s [105/159] graphite2-0:1.3.14-15.fc40.aa 100% | 30.1 MiB/s | 92.6 KiB | 00m00s [106/159] cairo-devel-0:1.18.0-3.fc40.a 100% | 5.5 MiB/s | 176.0 KiB | 00m00s [107/159] libselinux-devel-0:3.6-4.fc40 100% | 4.3 MiB/s | 115.2 KiB | 00m00s [108/159] gc-0:8.2.2-6.fc40.aarch64 100% | 3.6 MiB/s | 109.7 KiB | 00m00s [109/159] python3-0:3.12.3-2.fc41.aarch 100% | 979.0 KiB/s | 27.4 KiB | 00m00s [110/159] python3-packaging-0:24.0-1.fc 100% | 4.2 MiB/s | 116.4 KiB | 00m00s [111/159] sysprof-capture-devel-0:46.0- 100% | 1.8 MiB/s | 56.8 KiB | 00m00s [112/159] gnutls-0:3.8.5-1.fc41.aarch64 100% | 23.4 MiB/s | 1.1 MiB | 00m00s [113/159] brotli-devel-0:1.1.0-3.fc40.a 100% | 1.5 MiB/s | 33.8 KiB | 00m00s [114/159] libpng-devel-2:1.6.40-3.fc40. 100% | 11.4 MiB/s | 291.4 KiB | 00m00s [115/159] gettext-0:0.22.5-2.fc41.aarch 100% | 22.6 MiB/s | 1.1 MiB | 00m00s 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100% | 22.4 MiB/s | 435.3 KiB | 00m00s [155/159] flexiblas-openblas-openmp64-0 100% | 8.5 MiB/s | 17.4 KiB | 00m00s [156/159] libsepol-devel-0:3.6-3.fc40.a 100% | 1.6 MiB/s | 40.2 KiB | 00m00s [157/159] openblas-openmp-0:0.3.26-4.fc 100% | 101.0 MiB/s | 3.8 MiB | 00m00s [158/159] openblas-0:0.3.26-4.fc40.aarc 100% | 1.3 MiB/s | 38.6 KiB | 00m00s [159/159] openblas-openmp64-0:0.3.26-4. 100% | 35.4 MiB/s | 3.8 MiB | 00m00s -------------------------------------------------------------------------------- [159/159] Total 100% | 117.3 MiB/s | 265.0 MiB | 00m02s Running transaction [ 1/161] Verify package files 100% | 163.0 B/s | 159.0 B | 00m01s >>> Running pre-transaction scriptlet: crypto-policies-scripts-0:20240320-1.git5 >>> Stop pre-transaction scriptlet: crypto-policies-scripts-0:20240320-1.git58e3 >>> Running pre-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch >>> Stop pre-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch >>> Running pre-transaction scriptlet: 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fontconfig-0:2.15.0-4.fc40.aarch64 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-4.fc40.aarch64 >>> Running post-transaction scriptlet: java-21-openjdk-1:21.0.2.0.13-3.fc41.aar >>> Stop post-transaction scriptlet: java-21-openjdk-1:21.0.2.0.13-3.fc41.aarch6 >>> Running post-transaction scriptlet: java-21-openjdk-devel-1:21.0.2.0.13-3.fc >>> Stop post-transaction scriptlet: java-21-openjdk-devel-1:21.0.2.0.13-3.fc41. >>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-16.fc41.aarch64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-16.fc41.aarch64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.aarch64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.aarch64 >>> Running trigger-install scriptlet: glib2-0:2.80.0-1.fc41.aarch64 >>> Stop trigger-install scriptlet: glib2-0:2.80.0-1.fc41.aarch64 >>> Running trigger-install scriptlet: glib2-0:2.80.0-1.fc41.aarch64 >>> Stop trigger-install scriptlet: glib2-0:2.80.0-1.fc41.aarch64 >>> Running trigger-install scriptlet: desktop-file-utils-0:0.26-12.fc40.aarch64 >>> Stop trigger-install scriptlet: desktop-file-utils-0:0.26-12.fc40.aarch64 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-4.fc40.aarch64 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-4.fc40.aarch64 Warning: skipped PGP checks for 159 package(s). Finish: build setup for R-Rhtslib-2.4.1-1.fc41.src.rpm Start: rpmbuild R-Rhtslib-2.4.1-1.fc41.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1714089600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.z5tsqo + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Rhtslib + /usr/bin/mkdir -p Rhtslib + cd Rhtslib + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Rhtslib_2.4.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/Rhtslib-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/Rhtslib-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + pushd Rhtslib ~/build/BUILD/Rhtslib/Rhtslib ~/build/BUILD/Rhtslib Patch #0 (R-Rhtslib-zlibbioc.patch): + echo 'Patch #0 (R-Rhtslib-zlibbioc.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 patching file DESCRIPTION patching file NAMESPACE + echo 'Patch #1 (R-Rhtslib-buildroot-fix.patch):' Patch #1 (R-Rhtslib-buildroot-fix.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 patching file src/Makevars.common + popd ~/build/BUILD/Rhtslib + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.r6Oanm + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rhtslib + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Lpkw9Q + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64 ++ dirname /builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rhtslib + mkdir -p /builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64/usr/lib64/R/library + R CMD INSTALL -l /builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64/usr/lib64/R/library Rhtslib * installing *source* package ‘Rhtslib’ ... ** using non-staged installation via StagedInstall field ** libs using C compiler: ‘gcc (GCC) 14.0.1 20240411 (Red Hat 14.0.1-0)’ cd "htslib-1.15.1" && make -f "Makefile.Rhtslib" make[1]: Entering directory '/builddir/build/BUILD/Rhtslib/Rhtslib/src/htslib-1.15.1' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kfunc.o kfunc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kstring.o kstring.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bcf_sr_sort.o bcf_sr_sort.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bgzf.o bgzf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o errmod.o errmod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o faidx.o faidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o header.o header.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile.o hfile.c echo '#define HTS_VERSION_TEXT "1.15.1"' > version.h echo '#define HTS_CC "gcc"' > config_vars.h echo '#define HTS_CPPFLAGS "-I/usr/local/include -D_FILE_OFFSET_BITS=64"' >> config_vars.h echo '#define HTS_CFLAGS "-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden"' >> config_vars.h echo '#define HTS_LDFLAGS "-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -fvisibility=hidden"' >> config_vars.h echo '#define HTS_LIBS "-lz -lm -lbz2 -llzma -lcurl"' >> config_vars.h gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts.o hts.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_expr.o hts_expr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_os.o hts_os.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o md5.o md5.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o multipart.o multipart.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o probaln.o probaln.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o realn.o realn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o regidx.o regidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o region.o region.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o sam.o sam.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o synced_bcf_reader.o synced_bcf_reader.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf_sweep.o vcf_sweep.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o tbx.o tbx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o textutils.o textutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o thread_pool.o thread_pool.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf.o vcf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcfutils.o vcfutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_codecs.o cram/cram_codecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_decode.o cram/cram_decode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_encode.o cram/cram_encode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_external.o cram/cram_external.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_index.o cram/cram_index.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_io.o cram/cram_io.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_stats.o cram/cram_stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/mFILE.o cram/mFILE.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/open_trace_file.o cram/open_trace_file.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/pooled_alloc.o cram/pooled_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/string_alloc.o cram/string_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c In file included from htscodecs/htscodecs/rANS_static4x16pr.c:74: In function ‘RansEncPutSymbol’, inlined from ‘rans_compress_O1_4x16.isra.0’ at htscodecs/htscodecs/rANS_static4x16pr.c:810:2: htscodecs/htscodecs/rANS_word.h:303:28: warning: ‘ptr’ may be used uninitialized [-Wmaybe-uninitialized] 303 | *pptr = (uint8_t *)(ptr-c); | ~~~~^~~ htscodecs/htscodecs/rANS_static4x16pr.c: In function ‘rans_compress_O1_4x16.isra.0’: htscodecs/htscodecs/rANS_static4x16pr.c:793:14: note: ‘ptr’ was declared here 793 | uint8_t* ptr = out_end; | ^~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rANS_static.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rle.o htscodecs/htscodecs/rle.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/tokenise_name3.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_libcurl.o hfile_libcurl.c hfile_libcurl.c: In function ‘libcurl_open’: hfile_libcurl.c:1335:9: warning: ‘CURLINFO_CONTENT_LENGTH_DOWNLOAD’ is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 1335 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, | ^~ In file included from hfile_libcurl.c:47: /usr/include/curl/curl.h:2879:3: note: declared here 2879 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o hfile_libcurl.o ranlib libhts.a gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kfunc.pico kfunc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kstring.pico kstring.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bcf_sr_sort.pico bcf_sr_sort.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bgzf.pico bgzf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o errmod.pico errmod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o faidx.pico faidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o header.pico header.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile.pico hfile.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts.pico hts.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_expr.pico hts_expr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_os.pico hts_os.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o md5.pico md5.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o multipart.pico multipart.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o probaln.pico probaln.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o realn.pico realn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o regidx.pico regidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o region.pico region.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o sam.pico sam.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o synced_bcf_reader.pico synced_bcf_reader.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf_sweep.pico vcf_sweep.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o tbx.pico tbx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o textutils.pico textutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o thread_pool.pico thread_pool.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf.pico vcf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcfutils.pico vcfutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_codecs.pico cram/cram_codecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_decode.pico cram/cram_decode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_encode.pico cram/cram_encode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_external.pico cram/cram_external.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_index.pico cram/cram_index.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_io.pico cram/cram_io.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_stats.pico cram/cram_stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/mFILE.pico cram/mFILE.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/open_trace_file.pico cram/open_trace_file.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/pooled_alloc.pico cram/pooled_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/string_alloc.pico cram/string_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/arith_dynamic.pico htscodecs/htscodecs/arith_dynamic.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/fqzcomp_qual.pico htscodecs/htscodecs/fqzcomp_qual.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/htscodecs.pico htscodecs/htscodecs/htscodecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/pack.pico htscodecs/htscodecs/pack.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static4x16pr.pico htscodecs/htscodecs/rANS_static4x16pr.c In file included from htscodecs/htscodecs/rANS_static4x16pr.c:74: In function ‘RansEncPutSymbol’, inlined from ‘rans_compress_O1_4x16.isra.0’ at htscodecs/htscodecs/rANS_static4x16pr.c:810:2: htscodecs/htscodecs/rANS_word.h:303:28: warning: ‘ptr’ may be used uninitialized [-Wmaybe-uninitialized] 303 | *pptr = (uint8_t *)(ptr-c); | ~~~~^~~ htscodecs/htscodecs/rANS_static4x16pr.c: In function ‘rans_compress_O1_4x16.isra.0’: htscodecs/htscodecs/rANS_static4x16pr.c:793:14: note: ‘ptr’ was declared here 793 | uint8_t* ptr = out_end; | ^~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static.pico htscodecs/htscodecs/rANS_static.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rle.pico htscodecs/htscodecs/rle.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/tokenise_name3.pico htscodecs/htscodecs/tokenise_name3.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_libcurl.pico hfile_libcurl.c hfile_libcurl.c: In function ‘libcurl_open’: hfile_libcurl.c:1335:9: warning: ‘CURLINFO_CONTENT_LENGTH_DOWNLOAD’ is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 1335 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, | ^~ In file included from hfile_libcurl.c:47: /usr/include/curl/curl.h:2879:3: note: declared here 2879 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -shared -Wl,-soname,libhts.so.3 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -fvisibility=hidden -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico htscodecs/htscodecs/arith_dynamic.pico htscodecs/htscodecs/fqzcomp_qual.pico htscodecs/htscodecs/htscodecs.pico htscodecs/htscodecs/pack.pico htscodecs/htscodecs/rANS_static4x16pr.pico htscodecs/htscodecs/rANS_static.pico htscodecs/htscodecs/rle.pico htscodecs/htscodecs/tokenise_name3.pico hfile_libcurl.pico -lz -lm -lbz2 -llzma -lcurl -lpthread ln -sf libhts.so libhts.so.3 make[1]: Leaving directory '/builddir/build/BUILD/Rhtslib/Rhtslib/src/htslib-1.15.1' mkdir -p "/builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64/usr/lib64/R/library/Rhtslib/include/htslib" cd "htslib-1.15.1/htslib" && cp * "/builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64/usr/lib64/R/library/Rhtslib/include/htslib" gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"htslib-1.15.1" -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c R_init_Rhtslib.c -o R_init_Rhtslib.o mkdir -p "/builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64/usr/lib64/R/library/Rhtslib/usrlib" cd "htslib-1.15.1" && cp libhts.so libhts.a "/builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64/usr/lib64/R/library/Rhtslib/usrlib" cd "/builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64/usr/lib64/R/library/Rhtslib/usrlib" && ln -s libhts.so libhts.so.2 gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o Rhtslib.so R_init_Rhtslib.o /builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64/usr/lib64/R/library/Rhtslib/usrlib/libhts.a -lcurl -lbz2 -llzma -lz -L/usr/lib64/R/lib -lR mkdir -p "/builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64/usr/lib64/R/library/Rhtslib/testdata/tabix" cd "htslib-1.15.1/test" && (cp *.sam *.bam *.vcf *.bcf *.cram *.fa *.fa.fai *.gff *.bed "/builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64/usr/lib64/R/library/Rhtslib/testdata" 2>/dev/null || true) && cd tabix && (cp *.sam *.bam *.vcf *.bcf *.cram *.fa *.fa.fai *.gff *.bed "/builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64/usr/lib64/R/library/Rhtslib/testdata/tabix" 2>/dev/null || true) installing to /builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64/usr/lib64/R/library/Rhtslib/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘Rhtslib’ finding HTML links ... done Rhtslib-package html pkgconfig html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Rhtslib) + test -d Rhtslib/src + cd Rhtslib/src + rm -f R_init_Rhtslib.o Rhtslib.so + rm -f /builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64/usr/lib64/R/library/R.css + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.4.1-1.fc41 --unique-debug-suffix -2.4.1-1.fc41.aarch64 --unique-debug-src-base R-Rhtslib-2.4.1-1.fc41.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/Rhtslib find-debuginfo: starting Extracting debug info from 2 files DWARF-compressing 2 files sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-Rhtslib-2.4.1-1.fc41.aarch64 5051 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.LeIQo2 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rhtslib + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-Rhtslib-2.4.1-1.fc41.aarch64 Provides: R(Rhtslib) = 2.4.1 R-Rhtslib = 2.4.1-1.fc41 R-Rhtslib(aarch-64) = 2.4.1-1.fc41 libhts.so.3()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(ABI) = 4.4 R-core ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libR.so()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libcurl.so.4()(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Suggests: R(BiocStyle) R(knitr) R(rmarkdown) Processing files: R-Rhtslib-devel-2.4.1-1.fc41.aarch64 Provides: R-Rhtslib-devel = 2.4.1-1.fc41 R-Rhtslib-devel(aarch-64) = 2.4.1-1.fc41 R-Rhtslib-static = 2.4.1-1.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Rhtslib-debugsource-2.4.1-1.fc41.aarch64 Provides: R-Rhtslib-debugsource = 2.4.1-1.fc41 R-Rhtslib-debugsource(aarch-64) = 2.4.1-1.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Rhtslib-debuginfo-2.4.1-1.fc41.aarch64 Provides: R-Rhtslib-debuginfo = 2.4.1-1.fc41 R-Rhtslib-debuginfo(aarch-64) = 2.4.1-1.fc41 debuginfo(build-id) = 27a7d31d3853686e16407d8ddea1c7b8cd180b33 debuginfo(build-id) = b4af82eff16fb029bab996cd1bd790f42f11ecfd libhts.so-2.4.1-1.fc41.aarch64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-Rhtslib-debugsource(aarch-64) = 2.4.1-1.fc41 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64 Wrote: /builddir/build/RPMS/R-Rhtslib-devel-2.4.1-1.fc41.aarch64.rpm Wrote: /builddir/build/RPMS/R-Rhtslib-debugsource-2.4.1-1.fc41.aarch64.rpm Wrote: /builddir/build/RPMS/R-Rhtslib-debuginfo-2.4.1-1.fc41.aarch64.rpm Wrote: /builddir/build/RPMS/R-Rhtslib-2.4.1-1.fc41.aarch64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.iOE2ho + umask 022 + cd /builddir/build/BUILD + cd Rhtslib + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-Rhtslib-2.4.1-1.fc41.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.soNNeh + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/Rhtslib-SPECPARTS + rm -rf Rhtslib Rhtslib.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild R-Rhtslib-2.4.1-1.fc41.src.rpm Finish: build phase for R-Rhtslib-2.4.1-1.fc41.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-40-aarch64-1714171571.083350/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/R-Rhtslib-2.4.1-1.fc41.src.rpm) Config(child) 1 minutes 40 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-Rhtslib-devel", "epoch": null, "version": "2.4.1", "release": "1.fc41", "arch": "aarch64" }, { "name": "R-Rhtslib-debugsource", "epoch": null, "version": "2.4.1", "release": "1.fc41", "arch": "aarch64" }, { "name": "R-Rhtslib", "epoch": null, "version": "2.4.1", "release": "1.fc41", "arch": "aarch64" }, { "name": "R-Rhtslib-debuginfo", "epoch": null, "version": "2.4.1", "release": "1.fc41", "arch": "aarch64" }, { "name": "R-Rhtslib", "epoch": null, "version": "2.4.1", "release": "1.fc41", "arch": "src" } ] } RPMResults finished