Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c10d' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7377988-fedora-40-i386 --chroot fedora-40-i386 Version: 0.72 PID: 6314 Logging PID: 6315 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7377988, 'buildroot_pkgs': [], 'chroot': 'fedora-40-i386', 'enable_net': False, 'fedora_review': False, 'git_hash': 'cac0147d25336dbacb7abb30bbd4546b3bb7b3c5', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Rsamtools', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-Rsamtools', 'package_version': '2.18.0-1', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-40-i386/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/iucar', 'tags': [], 'task_id': '7377988-fedora-40-i386', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Rsamtools /var/lib/copr-rpmbuild/workspace/workdir-5qxx3zff/R-Rsamtools --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Rsamtools', '/var/lib/copr-rpmbuild/workspace/workdir-5qxx3zff/R-Rsamtools', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-5qxx3zff/R-Rsamtools'... Running: git checkout cac0147d25336dbacb7abb30bbd4546b3bb7b3c5 -- cmd: ['git', 'checkout', 'cac0147d25336dbacb7abb30bbd4546b3bb7b3c5', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-5qxx3zff/R-Rsamtools rc: 0 stdout: stderr: Note: switching to 'cac0147d25336dbacb7abb30bbd4546b3bb7b3c5'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at cac0147 automatic import of R-Rsamtools Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-5qxx3zff/R-Rsamtools rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Rsamtools_2.18.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o Rsamtools_2.18.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/R-Rsamtools/Rsamtools_2.18.0.tar.gz/md5/63af2a7dd2513e992fd78b26ca2b3775/Rsamtools_2.18.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 2850k 100 2850k 0 0 27.1M 0 --:--:-- --:--:-- --:--:-- 27.2M INFO: Reading stdout from command: md5sum Rsamtools_2.18.0.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-5qxx3zff/R-Rsamtools/R-Rsamtools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-5qxx3zff/R-Rsamtools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714176090.143047 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-5qxx3zff/R-Rsamtools/R-Rsamtools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-5qxx3zff/R-Rsamtools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714176090.143047 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-5qxx3zff/R-Rsamtools/R-Rsamtools.spec) Config(fedora-40-i686) Start: clean chroot Finish: clean chroot Mock Version: 5.5 INFO: Mock Version: 5.5 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-i686-bootstrap-1714176090.143047/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:40 INFO: Pulling image: registry.fedoraproject.org/fedora:40 INFO: Copy content of container registry.fedoraproject.org/fedora:40 to /var/lib/mock/fedora-40-i686-bootstrap-1714176090.143047/root INFO: Checking that registry.fedoraproject.org/fedora:40 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:40 with podman image mount INFO: image registry.fedoraproject.org/fedora:40 as /var/lib/containers/storage/overlay/77920da379140c986c6e1746edfc48e7acea754976fcd596ef5e64c96b3b1bed/merged INFO: umounting image registry.fedoraproject.org/fedora:40 (/var/lib/containers/storage/overlay/77920da379140c986c6e1746edfc48e7acea754976fcd596ef5e64c96b3b1bed/merged) with podman image umount INFO: Using 'dnf' instead of 'dnf5' for bootstrap chroot INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf5 tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 11 MB/s | 2.7 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 1.9 MB/s | 17 MB 00:09 local 1.1 MB/s | 17 MB 00:16 Last metadata expiration check: 0:00:01 ago on Sat Apr 27 00:02:17 2024. Dependencies resolved. ========================================================================================================== Package Arch Version Repository Size ========================================================================================================== Installing: dnf5 x86_64 5.1.17-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 691 k dnf5-plugins x86_64 5.1.17-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 351 k Installing dependencies: fmt x86_64 10.2.1-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 125 k libdnf5 x86_64 5.1.17-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 997 k libdnf5-cli x86_64 5.1.17-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 231 k sdbus-cpp x86_64 1.5.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 113 k systemd-libs x86_64 255.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 706 k Transaction Summary ========================================================================================================== Install 7 Packages Total download size: 3.1 M Installed size: 8.8 M Downloading Packages: (1/7): dnf5-plugins-5.1.17-1.fc41.x86_64.rpm 261 kB/s | 351 kB 00:01 (2/7): libdnf5-5.1.17-1.fc41.x86_64.rpm 16 MB/s | 997 kB 00:00 (3/7): libdnf5-cli-5.1.17-1.fc41.x86_64.rpm 5.9 MB/s | 231 kB 00:00 (4/7): sdbus-cpp-1.5.0-2.fc41.x86_64.rpm 2.1 MB/s | 113 kB 00:00 (5/7): systemd-libs-255.5-1.fc41.x86_64.rpm 26 MB/s | 706 kB 00:00 (6/7): dnf5-5.1.17-1.fc41.x86_64.rpm 298 kB/s | 691 kB 00:02 (7/7): fmt-10.2.1-4.fc41.x86_64.rpm 53 kB/s | 125 kB 00:02 -------------------------------------------------------------------------------- Total 1.3 MB/s | 3.1 MB 00:02 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : fmt-10.2.1-4.fc41.x86_64 1/7 Installing : libdnf5-5.1.17-1.fc41.x86_64 2/7 Installing : libdnf5-cli-5.1.17-1.fc41.x86_64 3/7 Installing : systemd-libs-255.5-1.fc41.x86_64 4/7 Installing : sdbus-cpp-1.5.0-2.fc41.x86_64 5/7 Installing : dnf5-5.1.17-1.fc41.x86_64 6/7 Installing : dnf5-plugins-5.1.17-1.fc41.x86_64 7/7 Running scriptlet: dnf5-plugins-5.1.17-1.fc41.x86_64 7/7 Installed: dnf5-5.1.17-1.fc41.x86_64 dnf5-plugins-5.1.17-1.fc41.x86_64 fmt-10.2.1-4.fc41.x86_64 libdnf5-5.1.17-1.fc41.x86_64 libdnf5-cli-5.1.17-1.fc41.x86_64 sdbus-cpp-1.5.0-2.fc41.x86_64 systemd-libs-255.5-1.fc41.x86_64 Complete! INFO: Switching package manager from dnf to the dnf5 (direct choice) Finish(bootstrap): installing dnf5 tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-i686-1714176090.143047/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 python3-dnf-4.19.2-1.fc40.noarch yum-4.19.2-1.fc40.noarch dnf5-5.1.17-1.fc41.x86_64 dnf5-plugins-5.1.17-1.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Additional repo http_kojipkgs_fedorapr 100% | 2.8 MiB/s | 15.1 MiB | 00m05s Copr repository 100% | 12.6 MiB/s | 2.7 MiB | 00m00s local 100% | 3.0 MiB/s | 15.1 MiB | 00m05s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash i686 5.2.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.3 MiB bzip2 i686 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 89.9 KiB coreutils i686 9.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.4 MiB cpio i686 2.15-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB diffutils i686 3.10-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB fedora-release noarch 41-0.9 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B findutils i686 1:4.9.0-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB gawk i686 5.3.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB glibc-minimal-langpack i686 2.39.9000-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B grep i686 3.11-7.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB gzip i686 1.13-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 384.1 KiB info i686 7.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 360.4 KiB patch i686 2.7.6-24.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 297.9 KiB redhat-rpm-config noarch 288-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183.3 KiB rpm-build i686 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 154.8 KiB sed i686 4.9-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 860.6 KiB shadow-utils i686 2:4.15.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.0 MiB tar i686 2:1.35-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB unzip i686 6.0-63.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 392.2 KiB util-linux i686 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.4 MiB which i686 2.21-41.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.8 KiB xz i686 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB Installing dependencies: alternatives i686 1.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 57.4 KiB ansible-srpm-macros noarch 1-15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.7 KiB audit-libs i686 4.0.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 337.9 KiB authselect i686 1.5.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 160.7 KiB authselect-libs i686 1.5.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 821.4 KiB basesystem noarch 11-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B binutils i686 2.42.50-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 25.3 MiB binutils-gold i686 2.42.50-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB bzip2-libs i686 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 75.9 KiB ca-certificates noarch 2023.2.62_v7.0.401-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB coreutils-common i686 9.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.2 MiB cracklib i686 2.9.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235.7 KiB crypto-policies noarch 20240320-1.git58e3d95.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 119.2 KiB curl i686 8.7.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 753.3 KiB cyrus-sasl-lib i686 2.1.28-19.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB debugedit i686 5.0-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 188.7 KiB dwz i686 0.15-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 324.9 KiB ed i686 1.20.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 141.7 KiB efi-srpm-macros noarch 5-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 KiB elfutils i686 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB elfutils-debuginfod-client i686 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55.2 KiB elfutils-default-yama-scope noarch 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB elfutils-libelf i686 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB elfutils-libs i686 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 696.6 KiB fedora-gpg-keys noarch 41-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 125.0 KiB fedora-release-common noarch 41-0.9 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19.2 KiB fedora-release-identity-basic noarch 41-0.9 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0 B fedora-repos noarch 41-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 KiB fedora-repos-rawhide noarch 41-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 KiB file i686 5.45-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 94.5 KiB file-libs i686 5.45-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.9 MiB filesystem i686 3.18-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.0 B fonts-srpm-macros noarch 1:2.0.5-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55.3 KiB forge-srpm-macros noarch 0.3.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.0 KiB fpc-srpm-macros noarch 1.3-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0 B 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ocaml-srpm-macros noarch 9-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB openblas-srpm-macros noarch 2-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0 B openldap i686 2.6.7-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 660.5 KiB openssl-libs i686 1:3.2.1-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.2 MiB p11-kit i686 0.25.3-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB p11-kit-trust i686 0.25.3-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 357.7 KiB package-notes-srpm-macros noarch 0.5-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam i686 1.6.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB pam-libs i686 1.6.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 120.7 KiB pcre2 i686 10.43-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 660.1 KiB pcre2-syntax noarch 10.43-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 249.0 KiB perl-srpm-macros noarch 1-53.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf i686 2.1.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 80.9 KiB pkgconf-m4 noarch 2.1.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13.9 KiB pkgconf-pkg-config i686 2.1.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 979.0 B popt i686 1.19-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 135.9 KiB publicsuffix-list-dafsa noarch 20240107-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.12.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 KiB python-srpm-macros noarch 3.12-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 50.5 KiB qt5-srpm-macros noarch 5.15.13-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 492.0 B qt6-srpm-macros noarch 6.7.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline i686 8.2-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 457.5 KiB rpm i686 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.9 MiB rpm-build-libs i686 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 201.2 KiB rpm-libs i686 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 756.8 KiB rpm-sequoia i686 1.6.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB rust-srpm-macros noarch 26.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.14.5-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.4 KiB sqlite-libs i686 3.45.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB systemd-libs i686 255.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 MiB util-linux-core i686 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB xxhash-libs i686 0.8.2-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 115.8 KiB xz-libs i686 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 229.2 KiB zig-srpm-macros noarch 1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip i686 3.0-40.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 707.0 KiB zlib-ng-compat i686 2.1.6-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 145.4 KiB zstd i686 1.5.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB Installing groups: build Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation 175 MiB will be used (install 175 MiB, remove 0 B). [ 1/153] bash-0:5.2.26-3.fc40.i686 100% | 12.5 MiB/s | 1.8 MiB | 00m00s [ 2/153] coreutils-0:9.5-1.fc41.i686 100% | 7.9 MiB/s | 1.2 MiB | 00m00s [ 3/153] bzip2-0:1.0.8-18.fc40.i686 100% | 318.5 KiB/s | 52.6 KiB | 00m00s [ 4/153] diffutils-0:3.10-5.fc40.i686 100% | 16.4 MiB/s | 403.3 KiB | 00m00s [ 5/153] cpio-0:2.15-1.fc40.i686 100% | 10.1 MiB/s | 290.5 KiB | 00m00s [ 6/153] fedora-release-0:41-0.9.noarc 100% | 524.2 KiB/s | 11.0 KiB | 00m00s [ 7/153] findutils-1:4.9.0-8.fc40.i686 100% | 18.6 MiB/s | 494.4 KiB | 00m00s [ 8/153] gawk-0:5.3.0-3.fc40.i686 100% | 21.4 MiB/s | 1.0 MiB | 00m00s [ 9/153] glibc-minimal-langpack-0:2.39 100% | 2.2 MiB/s | 110.0 KiB | 00m00s [ 10/153] grep-0:3.11-7.fc40.i686 100% | 5.8 MiB/s | 295.7 KiB | 00m00s [ 11/153] info-0:7.1-2.fc40.i686 100% | 6.3 MiB/s | 185.6 KiB | 00m00s [ 12/153] gzip-0:1.13-1.fc40.i686 100% | 3.7 MiB/s | 162.5 KiB | 00m00s [ 13/153] patch-0:2.7.6-24.fc40.i686 100% | 5.3 MiB/s | 141.9 KiB | 00m00s [ 14/153] redhat-rpm-config-0:288-1.fc4 100% | 2.9 MiB/s | 75.3 KiB | 00m00s [ 15/153] rpm-build-0:4.19.1.1-1.fc40.i 100% | 2.7 MiB/s | 71.3 KiB | 00m00s [ 16/153] sed-0:4.9-1.fc40.i686 100% | 12.2 MiB/s | 311.4 KiB | 00m00s [ 17/153] unzip-0:6.0-63.fc40.i686 100% | 7.7 MiB/s | 180.4 KiB | 00m00s [ 18/153] tar-2:1.35-3.fc40.i686 100% | 18.9 MiB/s | 868.8 KiB | 00m00s [ 19/153] shadow-utils-2:4.15.1-2.fc41. 100% | 24.7 MiB/s | 1.3 MiB | 00m00s [ 20/153] which-0:2.21-41.fc40.i686 100% | 1.5 MiB/s | 41.5 KiB | 00m00s [ 21/153] xz-1:5.4.6-3.fc41.i686 100% | 15.9 MiB/s | 536.2 KiB | 00m00s [ 22/153] util-linux-0:2.40-13.fc41.i68 100% | 19.6 MiB/s | 1.2 MiB | 00m00s [ 23/153] fedora-release-common-0:41-0. 100% | 1.0 MiB/s | 21.5 KiB | 00m00s [ 24/153] coreutils-common-0:9.5-1.fc41 100% | 28.3 MiB/s | 2.1 MiB | 00m00s [ 25/153] glibc-0:2.39.9000-16.fc41.i68 100% | 27.1 MiB/s | 2.0 MiB | 00m00s [ 26/153] glibc-common-0:2.39.9000-16.f 100% | 5.8 MiB/s | 400.9 KiB | 00m00s [ 27/153] libblkid-0:2.40-13.fc41.i686 100% | 3.9 MiB/s | 136.6 KiB | 00m00s [ 28/153] libmount-0:2.40-13.fc41.i686 100% | 6.1 MiB/s | 162.4 KiB | 00m00s [ 29/153] libfdisk-0:2.40-13.fc41.i686 100% | 5.2 MiB/s | 175.6 KiB | 00m00s [ 30/153] libsmartcols-0:2.40-13.fc41.i 100% | 3.8 MiB/s | 85.7 KiB | 00m00s [ 31/153] xz-libs-1:5.4.6-3.fc41.i686 100% | 4.2 MiB/s | 119.5 KiB | 00m00s [ 32/153] libuuid-0:2.40-13.fc41.i686 100% | 650.1 KiB/s | 29.9 KiB | 00m00s [ 33/153] util-linux-core-0:2.40-13.fc4 100% | 11.3 MiB/s | 534.1 KiB | 00m00s [ 34/153] fedora-repos-0:41-0.1.noarch 100% | 333.7 KiB/s | 9.3 KiB | 00m00s [ 35/153] fedora-gpg-keys-0:41-0.1.noar 100% | 6.2 MiB/s | 121.0 KiB | 00m00s [ 36/153] fedora-repos-rawhide-0:41-0.1 100% | 387.9 KiB/s | 8.9 KiB | 00m00s [ 37/153] libselinux-0:3.6-4.fc40.i686 100% | 3.9 MiB/s | 92.5 KiB | 00m00s [ 38/153] ncurses-libs-0:6.4-12.2024012 100% | 13.3 MiB/s | 353.9 KiB | 00m00s [ 39/153] libxcrypt-0:4.4.36-5.fc40.i68 100% | 3.4 MiB/s | 120.7 KiB | 00m00s [ 40/153] glibc-gconv-extra-0:2.39.9000 100% | 19.5 MiB/s | 1.7 MiB | 00m00s [ 41/153] audit-libs-0:4.0.1-1.fc41.i68 100% | 3.6 MiB/s | 129.1 KiB | 00m00s [ 42/153] systemd-libs-0:255.5-1.fc41.i 100% | 14.9 MiB/s | 747.1 KiB | 00m00s [ 43/153] authselect-libs-0:1.5.0-5.fc4 100% | 5.1 MiB/s | 207.5 KiB | 00m00s [ 44/153] libcap-ng-0:0.8.5-1.fc41.i686 100% | 1.3 MiB/s | 33.0 KiB | 00m00s [ 45/153] libutempter-0:1.2.1-13.fc40.i 100% | 1.0 MiB/s | 26.7 KiB | 00m00s [ 46/153] pam-0:1.6.1-1.fc41.i686 100% | 17.9 MiB/s | 530.6 KiB | 00m00s [ 47/153] authselect-0:1.5.0-5.fc41.i68 100% | 5.3 MiB/s | 142.2 KiB | 00m00s [ 48/153] pam-libs-0:1.6.1-1.fc41.i686 100% | 2.4 MiB/s | 59.4 KiB | 00m00s [ 49/153] readline-0:8.2-8.fc40.i686 100% | 8.2 MiB/s | 218.4 KiB | 00m00s [ 50/153] zlib-ng-compat-0:2.1.6-2.fc40 100% | 3.1 MiB/s | 81.4 KiB | 00m00s [ 51/153] bzip2-libs-0:1.0.8-18.fc40.i6 100% | 1.7 MiB/s | 41.1 KiB | 00m00s [ 52/153] libacl-0:2.3.2-1.fc40.i686 100% | 991.8 KiB/s | 25.8 KiB | 00m00s [ 53/153] libcap-0:2.69-8.fc41.i686 100% | 1.9 MiB/s | 87.2 KiB | 00m00s [ 54/153] libgcc-0:14.0.1-0.15.fc41.i68 100% | 3.4 MiB/s | 143.6 KiB | 00m00s [ 55/153] libzstd-0:1.5.6-1.fc41.i686 100% | 7.1 MiB/s | 284.9 KiB | 00m00s [ 56/153] libeconf-0:0.6.2-1.fc41.i686 100% | 1.7 MiB/s | 33.8 KiB | 00m00s [ 57/153] libattr-0:2.5.2-3.fc40.i686 100% | 705.7 KiB/s | 18.3 KiB | 00m00s [ 58/153] lz4-libs-0:1.9.4-6.fc40.i686 100% | 1.9 MiB/s | 69.8 KiB | 00m00s [ 59/153] setup-0:2.14.5-2.fc40.noarch 100% | 6.9 MiB/s | 148.1 KiB | 00m00s [ 60/153] libsemanage-0:3.6-3.fc40.i686 100% | 3.4 MiB/s | 126.0 KiB | 00m00s [ 61/153] debugedit-0:5.0-14.fc40.i686 100% | 2.5 MiB/s | 79.5 KiB | 00m00s [ 62/153] binutils-gold-0:2.42.50-6.fc4 100% | 17.0 MiB/s | 852.6 KiB | 00m00s [ 63/153] elfutils-debuginfod-client-0: 100% | 1.8 MiB/s | 38.6 KiB | 00m00s [ 64/153] elfutils-0:0.191-7.fc41.i686 100% | 15.7 MiB/s | 561.9 KiB | 00m00s [ 65/153] binutils-0:2.42.50-6.fc41.i68 100% | 47.7 MiB/s | 5.9 MiB | 00m00s [ 66/153] elfutils-libelf-0:0.191-7.fc4 100% | 6.6 MiB/s | 214.9 KiB | 00m00s [ 67/153] elfutils-libs-0:0.191-7.fc41. 100% | 6.5 MiB/s | 291.7 KiB | 00m00s [ 68/153] file-0:5.45-5.fc41.i686 100% | 1.7 MiB/s | 49.1 KiB | 00m00s [ 69/153] file-libs-0:5.45-5.fc41.i686 100% | 21.5 MiB/s | 771.7 KiB | 00m00s [ 70/153] pkgconf-pkg-config-0:2.1.0-1. 100% | 483.2 KiB/s | 9.7 KiB | 00m00s [ 71/153] rpm-build-libs-0:4.19.1.1-1.f 100% | 4.1 MiB/s | 101.6 KiB | 00m00s [ 72/153] popt-0:1.19-6.fc40.i686 100% | 1.5 MiB/s | 61.7 KiB | 00m00s [ 73/153] rpm-0:4.19.1.1-1.fc40.i686 100% | 13.8 MiB/s | 510.3 KiB | 00m00s [ 74/153] zstd-0:1.5.6-1.fc41.i686 100% | 14.8 MiB/s | 453.5 KiB | 00m00s [ 75/153] curl-0:8.7.1-1.fc41.i686 100% | 10.5 MiB/s | 311.7 KiB | 00m00s [ 76/153] rpm-libs-0:4.19.1.1-1.fc40.i6 100% | 9.5 MiB/s | 338.8 KiB | 00m00s [ 77/153] dwz-0:0.15-6.fc40.i686 100% | 5.5 MiB/s | 145.7 KiB | 00m00s [ 78/153] ansible-srpm-macros-0:1-15.fc 100% | 745.3 KiB/s | 20.9 KiB | 00m00s [ 79/153] libarchive-0:3.7.2-3.fc41.i68 100% | 9.7 MiB/s | 447.7 KiB | 00m00s [ 80/153] fonts-srpm-macros-1:2.0.5-14. 100% | 1.5 MiB/s | 26.5 KiB | 00m00s [ 81/153] efi-srpm-macros-0:5-11.fc40.n 100% | 796.4 KiB/s | 22.3 KiB | 00m00s [ 82/153] forge-srpm-macros-0:0.3.1-1.f 100% | 924.0 KiB/s | 19.4 KiB | 00m00s [ 83/153] fpc-srpm-macros-0:1.3-12.fc40 100% | 373.0 KiB/s | 7.8 KiB | 00m00s [ 84/153] ghc-srpm-macros-0:1.9.1-1.fc4 100% | 345.0 KiB/s | 9.0 KiB | 00m00s [ 85/153] go-srpm-macros-0:3.6.0-1.fc41 100% | 1.3 MiB/s | 27.9 KiB | 00m00s [ 86/153] gnat-srpm-macros-0:6-5.fc40.n 100% | 304.2 KiB/s | 8.8 KiB | 00m00s [ 87/153] kernel-srpm-macros-0:1.0-23.f 100% | 464.9 KiB/s | 9.8 KiB | 00m00s [ 88/153] lua-srpm-macros-0:1-13.fc40.n 100% | 485.0 KiB/s | 8.7 KiB | 00m00s [ 89/153] ocaml-srpm-macros-0:9-3.fc40. 100% | 453.7 KiB/s | 9.1 KiB | 00m00s [ 90/153] package-notes-srpm-macros-0:0 100% | 414.3 KiB/s | 9.9 KiB | 00m00s [ 91/153] openblas-srpm-macros-0:2-17.f 100% | 255.3 KiB/s | 7.7 KiB | 00m00s [ 92/153] perl-srpm-macros-0:1-53.fc40. 100% | 381.0 KiB/s | 8.4 KiB | 00m00s [ 93/153] qt5-srpm-macros-0:5.15.13-1.f 100% | 498.7 KiB/s | 8.5 KiB | 00m00s [ 94/153] python-srpm-macros-0:3.12-9.f 100% | 1.2 MiB/s | 24.0 KiB | 00m00s [ 95/153] pyproject-srpm-macros-0:1.12. 100% | 486.7 KiB/s | 13.6 KiB | 00m00s [ 96/153] rust-srpm-macros-0:26.2-1.fc4 100% | 661.2 KiB/s | 12.6 KiB | 00m00s [ 97/153] zig-srpm-macros-0:1-2.fc40.no 100% | 502.4 KiB/s | 8.0 KiB | 00m00s [ 98/153] qt6-srpm-macros-0:6.7.0-1.fc4 100% | 373.8 KiB/s | 9.0 KiB | 00m00s [ 99/153] pkgconf-0:2.1.0-1.fc40.i686 100% | 2.1 MiB/s | 43.7 KiB | 00m00s [100/153] pkgconf-m4-0:2.1.0-1.fc40.noa 100% | 515.7 KiB/s | 13.9 KiB | 00m00s [101/153] zip-0:3.0-40.fc40.i686 100% | 6.2 MiB/s | 267.2 KiB | 00m00s [102/153] libpkgconf-0:2.1.0-1.fc40.i68 100% | 1.4 MiB/s | 41.4 KiB | 00m00s [103/153] ed-0:1.20.2-1.fc41.i686 100% | 3.5 MiB/s | 81.3 KiB | 00m00s [104/153] gdbm-1:1.23-6.fc40.i686 100% | 5.0 MiB/s | 149.6 KiB | 00m00s [105/153] gdbm-libs-1:1.23-6.fc40.i686 100% | 2.3 MiB/s | 59.6 KiB | 00m00s [106/153] libnsl2-0:2.0.1-1.fc40.i686 100% | 1.4 MiB/s | 30.5 KiB | 00m00s [107/153] libtirpc-0:1.3.4-1.rc3.fc41.i 100% | 3.8 MiB/s | 100.2 KiB | 00m00s [108/153] libpwquality-0:1.4.5-9.fc40.i 100% | 3.4 MiB/s | 109.0 KiB | 00m00s [109/153] crypto-policies-0:20240320-1. 100% | 2.3 MiB/s | 64.9 KiB | 00m00s [110/153] openssl-libs-1:3.2.1-6.fc41.i 100% | 35.3 MiB/s | 2.3 MiB | 00m00s [111/153] ncurses-base-0:6.4-12.2024012 100% | 2.7 MiB/s | 63.8 KiB | 00m00s [112/153] ca-certificates-0:2023.2.62_v 100% | 13.6 MiB/s | 862.1 KiB | 00m00s [113/153] libcom_err-0:1.47.0-5.fc40.i6 100% | 918.6 KiB/s | 25.7 KiB | 00m00s [114/153] krb5-libs-0:1.21.2-5.fc40.i68 100% | 17.4 MiB/s | 803.6 KiB | 00m00s [115/153] libsepol-0:3.6-3.fc40.i686 100% | 10.5 MiB/s | 354.0 KiB | 00m00s [116/153] pcre2-syntax-0:10.43-1.fc41.n 100% | 6.9 MiB/s | 148.8 KiB | 00m00s [117/153] pcre2-0:10.43-1.fc41.i686 100% | 8.1 MiB/s | 239.8 KiB | 00m00s [118/153] cracklib-0:2.9.11-5.fc40.i686 100% | 4.2 MiB/s | 82.3 KiB | 00m00s [119/153] libverto-0:0.3.2-8.fc40.i686 100% | 750.4 KiB/s | 21.0 KiB | 00m00s [120/153] keyutils-libs-0:1.6.3-3.fc40. 100% | 1.0 MiB/s | 31.9 KiB | 00m00s [121/153] libxml2-0:2.12.6-1.fc41.i686 100% | 18.3 MiB/s | 729.3 KiB | 00m00s [122/153] basesystem-0:11-20.fc40.noarc 100% | 287.5 KiB/s | 7.2 KiB | 00m00s [123/153] gmp-1:6.3.0-1.fc41.i686 100% | 9.5 MiB/s | 311.3 KiB | 00m00s [124/153] fedora-release-identity-basic 100% | 561.9 KiB/s | 11.8 KiB | 00m00s [125/153] mpfr-0:4.2.1-3.fc40.i686 100% | 10.9 MiB/s | 391.2 KiB | 00m00s [126/153] filesystem-0:3.18-9.fc41.i686 100% | 17.2 MiB/s | 1.1 MiB | 00m00s [127/153] elfutils-default-yama-scope-0 100% | 580.4 KiB/s | 13.3 KiB | 00m00s [128/153] p11-kit-0:0.25.3-4.fc40.i686 100% | 15.4 MiB/s | 471.6 KiB | 00m00s [129/153] libstdc++-0:14.0.1-0.15.fc41. 100% | 21.5 MiB/s | 945.6 KiB | 00m00s [130/153] jansson-0:2.13.1-9.fc40.i686 100% | 1.5 MiB/s | 45.8 KiB | 00m00s [131/153] p11-kit-trust-0:0.25.3-4.fc40 100% | 3.0 MiB/s | 137.4 KiB | 00m00s [132/153] alternatives-0:1.26-3.fc40.i6 100% | 1.7 MiB/s | 40.1 KiB | 00m00s [133/153] lua-libs-0:5.4.6-5.fc40.i686 100% | 5.0 MiB/s | 149.1 KiB | 00m00s [134/153] rpm-sequoia-0:1.6.0-2.fc40.i6 100% | 20.2 MiB/s | 931.1 KiB | 00m00s [135/153] sqlite-libs-0:3.45.2-1.fc41.i 100% | 14.3 MiB/s | 749.2 KiB | 00m00s [136/153] libffi-0:3.4.6-1.fc41.i686 100% | 1.8 MiB/s | 37.9 KiB | 00m00s [137/153] libgomp-0:14.0.1-0.15.fc41.i6 100% | 6.9 MiB/s | 348.7 KiB | 00m00s [138/153] libtasn1-0:4.19.0-6.fc40.i686 100% | 2.0 MiB/s | 74.9 KiB | 00m00s [139/153] xxhash-libs-0:0.8.2-2.fc40.i6 100% | 1.6 MiB/s | 46.8 KiB | 00m00s [140/153] libcurl-0:8.7.1-1.fc41.i686 100% | 13.2 MiB/s | 379.7 KiB | 00m00s [141/153] libbrotli-0:1.1.0-3.fc40.i686 100% | 11.4 MiB/s | 338.4 KiB | 00m00s [142/153] libnghttp2-0:1.61.0-1.fc41.i6 100% | 2.1 MiB/s | 82.1 KiB | 00m00s [143/153] libidn2-0:2.3.7-1.fc40.i686 100% | 3.1 MiB/s | 113.0 KiB | 00m00s [144/153] libpsl-0:0.21.5-3.fc40.i686 100% | 1.8 MiB/s | 64.5 KiB | 00m00s [145/153] libssh-config-0:0.10.6-6.fc41 100% | 456.8 KiB/s | 9.1 KiB | 00m00s [146/153] libssh-0:0.10.6-6.fc41.i686 100% | 9.2 MiB/s | 226.5 KiB | 00m00s [147/153] openldap-0:2.6.7-1.fc40.i686 100% | 8.1 MiB/s | 272.1 KiB | 00m00s [148/153] cyrus-sasl-lib-0:2.1.28-19.fc 100% | 17.8 MiB/s | 856.6 KiB | 00m00s [149/153] gdb-minimal-0:14.2-5.fc41.i68 100% | 23.1 MiB/s | 4.7 MiB | 00m00s [150/153] libtool-ltdl-0:2.4.7-10.fc40. 100% | 1.6 MiB/s | 38.0 KiB | 00m00s [151/153] libevent-0:2.1.12-12.fc40.i68 100% | 6.6 MiB/s | 276.4 KiB | 00m00s [152/153] publicsuffix-list-dafsa-0:202 100% | 3.0 MiB/s | 58.1 KiB | 00m00s [153/153] libunistring-0:1.1-7.fc41.i68 100% | 10.8 MiB/s | 553.0 KiB | 00m00s -------------------------------------------------------------------------------- [153/153] Total 100% | 27.6 MiB/s | 53.1 MiB | 00m02s Running transaction [ 1/155] Verify package files 100% | 788.0 B/s | 153.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-9.fc41.i686 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-9.fc41.i686 [ 2/155] Prepare transaction 100% | 1.8 KiB/s | 153.0 B | 00m00s [ 3/155] Installing crypto-policies-0: 100% | 15.9 MiB/s | 146.2 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20240320-1.git58e3d95.fc41 >>> Stop post-install scriptlet: crypto-policies-0:20240320-1.git58e3d95.fc41.no [ 4/155] Installing fedora-release-ide 100% | 0.0 B/s | 952.0 B | 00m00s [ 5/155] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 6/155] Installing fedora-gpg-keys-0: 100% | 20.8 MiB/s | 170.1 KiB | 00m00s [ 7/155] Installing fedora-repos-0:41- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 8/155] Installing fedora-release-com 100% | 22.7 MiB/s | 23.3 KiB | 00m00s [ 9/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 10/155] Installing setup-0:2.14.5-2.f 100% | 50.6 MiB/s | 725.8 KiB | 00m00s >>> Running post-install scriptlet: setup-0:2.14.5-2.fc40.noarch >>> Stop post-install scriptlet: setup-0:2.14.5-2.fc40.noarch [ 11/155] Installing filesystem-0:3.18- 100% | 1.7 MiB/s | 212.0 KiB | 00m00s [ 12/155] Installing basesystem-0:11-20 100% | 0.0 B/s | 124.0 B | 00m00s [ 13/155] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 14/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 15/155] Installing pcre2-syntax-0:10. 100% | 122.8 MiB/s | 251.5 KiB | 00m00s [ 16/155] Installing ncurses-base-0:6.4 100% | 42.9 MiB/s | 351.6 KiB | 00m00s [ 17/155] Installing pkgconf-m4-0:2.1.0 100% | 0.0 B/s | 14.3 KiB | 00m00s [ 18/155] Installing rust-srpm-macros-0 100% | 5.4 MiB/s | 5.6 KiB | 00m00s [ 19/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [ 20/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 768.0 B | 00m00s [ 21/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [ 22/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 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pre-install scriptlet: glibc-0:2.39.9000-16.fc41.i686 >>> Stop pre-install scriptlet: glibc-0:2.39.9000-16.fc41.i686 [ 34/155] Installing glibc-0:2.39.9000- 100% | 112.1 MiB/s | 5.5 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.39.9000-16.fc41.i686 >>> Stop post-install scriptlet: glibc-0:2.39.9000-16.fc41.i686 [ 35/155] Installing bash-0:5.2.26-3.fc 100% | 267.5 MiB/s | 8.3 MiB | 00m00s >>> Running post-install scriptlet: bash-0:5.2.26-3.fc40.i686 >>> Stop post-install scriptlet: bash-0:5.2.26-3.fc40.i686 [ 36/155] Installing glibc-common-0:2.3 100% | 128.1 MiB/s | 1.0 MiB | 00m00s [ 37/155] Installing glibc-gconv-extra- 100% | 124.3 MiB/s | 7.3 MiB | 00m00s >>> Running post-install scriptlet: glibc-gconv-extra-0:2.39.9000-16.fc41.i686 >>> Stop post-install scriptlet: glibc-gconv-extra-0:2.39.9000-16.fc41.i686 [ 38/155] Installing zlib-ng-compat-0:2 100% | 142.8 MiB/s | 146.3 KiB | 00m00s [ 39/155] Installing xz-libs-1:5.4.6-3. 100% | 224.9 MiB/s | 230.3 KiB | 00m00s [ 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libcap-0:2.69-8.fc 100% | 68.1 MiB/s | 209.3 KiB | 00m00s [ 66/155] Installing systemd-libs-0:255 100% | 241.2 MiB/s | 1.9 MiB | 00m00s [ 67/155] Installing libcom_err-0:1.47. 100% | 58.2 MiB/s | 59.6 KiB | 00m00s [ 68/155] Installing libsepol-0:3.6-3.f 100% | 282.0 MiB/s | 866.4 KiB | 00m00s [ 69/155] Installing pcre2-0:10.43-1.fc 100% | 215.3 MiB/s | 661.5 KiB | 00m00s [ 70/155] Installing libselinux-0:3.6-4 100% | 189.0 MiB/s | 193.5 KiB | 00m00s [ 71/155] Installing sed-0:4.9-1.fc40.i 100% | 121.2 MiB/s | 868.8 KiB | 00m00s [ 72/155] Installing grep-0:3.11-7.fc40 100% | 125.8 MiB/s | 1.0 MiB | 00m00s [ 73/155] Installing findutils-1:4.9.0- 100% | 165.3 MiB/s | 1.5 MiB | 00m00s [ 74/155] Installing xz-1:5.4.6-3.fc41. 100% | 153.9 MiB/s | 2.0 MiB | 00m00s [ 75/155] Installing libmount-0:2.40-13 100% | 189.5 MiB/s | 388.1 KiB | 00m00s [ 76/155] Installing jansson-0:2.13.1-9 100% | 86.9 MiB/s | 88.9 KiB | 00m00s [ 77/155] Installing alternatives-0:1.2 100% | 57.7 MiB/s | 59.1 KiB | 00m00s [ 78/155] Installing lua-libs-0:5.4.6-5 100% | 151.3 MiB/s | 309.8 KiB | 00m00s [ 79/155] Installing libtasn1-0:4.19.0- 100% | 176.5 MiB/s | 180.7 KiB | 00m00s [ 80/155] Installing libunistring-0:1.1 100% | 289.0 MiB/s | 1.7 MiB | 00m00s [ 81/155] Installing elfutils-default-y 100% | 185.7 KiB/s | 2.0 KiB | 00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-7.fc41.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-7.fc41.noar [ 82/155] Installing libidn2-0:2.3.7-1. 100% | 64.5 MiB/s | 330.3 KiB | 00m00s [ 83/155] Installing libpsl-0:0.21.5-3. 100% | 71.2 MiB/s | 72.9 KiB | 00m00s [ 84/155] Installing util-linux-core-0: 100% | 125.4 MiB/s | 1.4 MiB | 00m00s [ 85/155] Installing tar-2:1.35-3.fc40. 100% | 187.2 MiB/s | 3.0 MiB | 00m00s [ 86/155] Installing libsemanage-0:3.6- 100% | 99.5 MiB/s | 305.8 KiB | 00m00s [ 87/155] Installing shadow-utils-2:4.1 100% | 74.7 MiB/s | 4.0 MiB | 00m00s >>> Running pre-install scriptlet: libutempter-0:1.2.1-13.fc40.i686 >>> Stop pre-install scriptlet: libutempter-0:1.2.1-13.fc40.i686 [ 88/155] Installing libutempter-0:1.2. 100% | 28.4 MiB/s | 58.1 KiB | 00m00s [ 89/155] Installing zip-0:3.0-40.fc40. 100% | 173.6 MiB/s | 710.9 KiB | 00m00s [ 90/155] Installing gdbm-1:1.23-6.fc40 100% | 111.0 MiB/s | 454.7 KiB | 00m00s [ 91/155] Installing cyrus-sasl-lib-0:2 100% | 247.3 MiB/s | 2.5 MiB | 00m00s [ 92/155] Installing zstd-0:1.5.6-1.fc4 100% | 258.6 MiB/s | 1.6 MiB | 00m00s [ 93/155] Installing libfdisk-0:2.40-13 100% | 200.9 MiB/s | 411.5 KiB | 00m00s [ 94/155] Installing bzip2-0:1.0.8-18.f 100% | 46.1 MiB/s | 94.4 KiB | 00m00s [ 95/155] Installing libxml2-0:2.12.6-1 100% | 224.8 MiB/s | 1.8 MiB | 00m00s [ 96/155] Installing sqlite-libs-0:3.45 100% | 245.4 MiB/s | 1.5 MiB | 00m00s [ 97/155] Installing ed-0:1.20.2-1.fc41 100% | 70.3 MiB/s | 144.0 KiB | 00m00s [ 98/155] Installing patch-0:2.7.6-24.f 100% | 146.2 MiB/s | 299.5 KiB | 00m00s [ 99/155] Installing cpio-0:2.15-1.fc40 100% | 157.9 MiB/s | 1.1 MiB | 00m00s [100/155] Installing diffutils-0:3.10-5 100% | 176.8 MiB/s | 1.6 MiB | 00m00s [101/155] Installing libpkgconf-0:2.1.0 100% | 79.9 MiB/s | 81.8 KiB | 00m00s [102/155] Installing pkgconf-0:2.1.0-1. 100% | 40.7 MiB/s | 83.4 KiB | 00m00s [103/155] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [104/155] Installing keyutils-libs-0:1. 100% | 57.6 MiB/s | 59.0 KiB | 00m00s [105/155] Installing libverto-0:0.3.2-8 100% | 29.8 MiB/s | 30.5 KiB | 00m00s [106/155] Installing libgomp-0:14.0.1-0 100% | 255.7 MiB/s | 523.7 KiB | 00m00s [107/155] Installing libffi-0:3.4.6-1.f 100% | 77.1 MiB/s | 78.9 KiB | 00m00s [108/155] Installing p11-kit-0:0.25.3-4 100% | 165.6 MiB/s | 2.3 MiB | 00m00s [109/155] Installing p11-kit-trust-0:0. 100% | 23.4 MiB/s | 359.4 KiB | 00m00s >>> Running post-install scriptlet: p11-kit-trust-0:0.25.3-4.fc40.i686 >>> Stop post-install scriptlet: p11-kit-trust-0:0.25.3-4.fc40.i686 [110/155] Installing openssl-libs-1:3.2 100% | 260.2 MiB/s | 6.2 MiB | 00m00s [111/155] Installing coreutils-0:9.5-1. 100% | 143.5 MiB/s | 5.5 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.n >>> Stop pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noar [112/155] Installing ca-certificates-0: 100% | 2.0 MiB/s | 2.3 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40. >>> Stop post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noa [113/155] Installing krb5-libs-0:1.21.2 100% | 179.3 MiB/s | 2.3 MiB | 00m00s [114/155] Installing libtirpc-0:1.3.4-1 100% | 103.3 MiB/s | 211.7 KiB | 00m00s [115/155] Installing gzip-0:1.13-1.fc40 100% | 126.8 MiB/s | 389.6 KiB | 00m00s [116/155] Installing authselect-libs-0: 100% | 90.8 MiB/s | 836.4 KiB | 00m00s [117/155] Installing libarchive-0:3.7.2 100% | 192.3 MiB/s | 984.3 KiB | 00m00s [118/155] Installing authselect-0:1.5.0 100% | 53.7 MiB/s | 165.0 KiB | 00m00s [119/155] Installing cracklib-0:2.9.11- 100% | 34.5 MiB/s | 247.1 KiB | 00m00s [120/155] Installing libpwquality-0:1.4 100% | 51.6 MiB/s | 422.9 KiB | 00m00s [121/155] Installing libnsl2-0:2.0.1-1. 100% | 56.9 MiB/s | 58.2 KiB | 00m00s [122/155] Installing pam-0:1.6.1-1.fc41 100% | 78.5 MiB/s | 1.7 MiB | 00m00s [123/155] Installing libssh-0:0.10.6-6. 100% | 178.8 MiB/s | 549.4 KiB | 00m00s [124/155] Installing rpm-sequoia-0:1.6. 100% | 284.3 MiB/s | 2.6 MiB | 00m00s [125/155] Installing rpm-libs-0:4.19.1. 100% | 246.9 MiB/s | 758.4 KiB | 00m00s [126/155] Installing libevent-0:2.1.12- 100% | 232.4 MiB/s | 951.9 KiB | 00m00s [127/155] Installing xxhash-libs-0:0.8. 100% | 114.5 MiB/s | 117.2 KiB | 00m00s [128/155] Installing libnghttp2-0:1.61. 100% | 170.5 MiB/s | 174.6 KiB | 00m00s [129/155] Installing libbrotli-0:1.1.0- 100% | 209.4 MiB/s | 857.7 KiB | 00m00s [130/155] Installing libtool-ltdl-0:2.4 100% | 68.9 MiB/s | 70.5 KiB | 00m00s [131/155] Installing openldap-0:2.6.7-1 100% | 162.2 MiB/s | 664.3 KiB | 00m00s [132/155] Installing libcurl-0:8.7.1-1. 100% | 200.8 MiB/s | 822.6 KiB | 00m00s [133/155] Installing elfutils-libs-0:0. 100% | 227.4 MiB/s | 698.4 KiB | 00m00s [134/155] Installing elfutils-debuginfo 100% | 55.9 MiB/s | 57.2 KiB | 00m00s [135/155] Installing binutils-gold-0:2. 100% | 105.8 MiB/s | 2.1 MiB | 00m00s >>> Running post-install scriptlet: binutils-gold-0:2.42.50-6.fc41.i686 >>> Stop post-install scriptlet: binutils-gold-0:2.42.50-6.fc41.i686 [136/155] Installing binutils-0:2.42.50 100% | 263.6 MiB/s | 25.3 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.42.50-6.fc41.i686 >>> Stop post-install scriptlet: binutils-0:2.42.50-6.fc41.i686 [137/155] Installing elfutils-0:0.191-7 100% | 230.9 MiB/s | 2.5 MiB | 00m00s [138/155] Installing gdb-minimal-0:14.2 100% | 309.8 MiB/s | 13.3 MiB | 00m00s [139/155] Installing debugedit-0:5.0-14 100% | 93.4 MiB/s | 191.4 KiB | 00m00s [140/155] Installing rpm-build-libs-0:4 100% | 197.3 MiB/s | 202.0 KiB | 00m00s [141/155] Installing curl-0:8.7.1-1.fc4 100% | 30.8 MiB/s | 755.8 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.i686 >>> Stop pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.i686 [142/155] Installing rpm-0:4.19.1.1-1.f 100% | 91.5 MiB/s | 2.4 MiB | 00m00s [143/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [144/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [145/155] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [146/155] Installing fonts-srpm-macros- 100% | 55.1 MiB/s | 56.5 KiB | 00m00s [147/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.3 KiB | 00m00s [148/155] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [149/155] Installing python-srpm-macros 100% | 50.5 MiB/s | 51.7 KiB | 00m00s [150/155] Installing redhat-rpm-config- 100% | 61.8 MiB/s | 189.7 KiB | 00m00s [151/155] Installing rpm-build-0:4.19.1 100% | 39.8 MiB/s | 163.0 KiB | 00m00s [152/155] Installing pyproject-srpm-mac 100% | 2.0 MiB/s | 2.1 KiB | 00m00s [153/155] Installing util-linux-0:2.40- 100% | 87.6 MiB/s | 3.5 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40-13.fc41.i686 >>> Stop post-install scriptlet: util-linux-0:2.40-13.fc41.i686 [154/155] Installing which-0:2.21-41.fc 100% | 39.6 MiB/s | 81.1 KiB | 00m00s [155/155] Installing info-0:7.1-2.fc40. 100% | 233.8 KiB/s | 360.8 KiB | 00m02s >>> Running post-transaction scriptlet: filesystem-0:3.18-9.fc41.i686 >>> Stop post-transaction scriptlet: filesystem-0:3.18-9.fc41.i686 >>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.f >>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc41.i686 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc41.i686 >>> Running post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.i686 >>> Stop post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.i686 >>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-16.fc41.i686 >>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-16.fc41.i686 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.i686 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.i686 Warning: skipped PGP checks for 153 package(s). Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-3.fc40.i686 ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-1.fc41.i686 authselect-1.5.0-5.fc41.i686 authselect-libs-1.5.0-5.fc41.i686 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.i686 binutils-2.42.50-6.fc41.i686 binutils-gold-2.42.50-6.fc41.i686 bzip2-1.0.8-18.fc40.i686 bzip2-libs-1.0.8-18.fc40.i686 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.5-1.fc41.i686 coreutils-common-9.5-1.fc41.i686 cpio-2.15-1.fc40.i686 cracklib-2.9.11-5.fc40.i686 crypto-policies-20240320-1.git58e3d95.fc41.noarch curl-8.7.1-1.fc41.i686 cyrus-sasl-lib-2.1.28-19.fc40.i686 debugedit-5.0-14.fc40.i686 diffutils-3.10-5.fc40.i686 dwz-0.15-6.fc40.i686 ed-1.20.2-1.fc41.i686 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-7.fc41.i686 elfutils-debuginfod-client-0.191-7.fc41.i686 elfutils-default-yama-scope-0.191-7.fc41.noarch elfutils-libelf-0.191-7.fc41.i686 elfutils-libs-0.191-7.fc41.i686 fedora-gpg-keys-41-0.1.noarch fedora-release-41-0.9.noarch fedora-release-common-41-0.9.noarch fedora-release-identity-basic-41-0.9.noarch fedora-repos-41-0.1.noarch fedora-repos-rawhide-41-0.1.noarch file-5.45-5.fc41.i686 file-libs-5.45-5.fc41.i686 filesystem-3.18-9.fc41.i686 findutils-4.9.0-8.fc40.i686 fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.i686 gdb-minimal-14.2-5.fc41.i686 gdbm-1.23-6.fc40.i686 gdbm-libs-1.23-6.fc40.i686 ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-16.fc41.i686 glibc-common-2.39.9000-16.fc41.i686 glibc-gconv-extra-2.39.9000-16.fc41.i686 glibc-minimal-langpack-2.39.9000-16.fc41.i686 gmp-6.3.0-1.fc41.i686 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-7.fc40.i686 gzip-1.13-1.fc40.i686 info-7.1-2.fc40.i686 jansson-2.13.1-9.fc40.i686 kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.i686 krb5-libs-1.21.2-5.fc40.i686 libacl-2.3.2-1.fc40.i686 libarchive-3.7.2-3.fc41.i686 libattr-2.5.2-3.fc40.i686 libblkid-2.40-13.fc41.i686 libbrotli-1.1.0-3.fc40.i686 libcap-2.69-8.fc41.i686 libcap-ng-0.8.5-1.fc41.i686 libcom_err-1.47.0-5.fc40.i686 libcurl-8.7.1-1.fc41.i686 libeconf-0.6.2-1.fc41.i686 libevent-2.1.12-12.fc40.i686 libfdisk-2.40-13.fc41.i686 libffi-3.4.6-1.fc41.i686 libgcc-14.0.1-0.15.fc41.i686 libgomp-14.0.1-0.15.fc41.i686 libidn2-2.3.7-1.fc40.i686 libmount-2.40-13.fc41.i686 libnghttp2-1.61.0-1.fc41.i686 libnsl2-2.0.1-1.fc40.i686 libpkgconf-2.1.0-1.fc40.i686 libpsl-0.21.5-3.fc40.i686 libpwquality-1.4.5-9.fc40.i686 libselinux-3.6-4.fc40.i686 libsemanage-3.6-3.fc40.i686 libsepol-3.6-3.fc40.i686 libsmartcols-2.40-13.fc41.i686 libssh-0.10.6-6.fc41.i686 libssh-config-0.10.6-6.fc41.noarch libstdc++-14.0.1-0.15.fc41.i686 libtasn1-4.19.0-6.fc40.i686 libtirpc-1.3.4-1.rc3.fc41.i686 libtool-ltdl-2.4.7-10.fc40.i686 libunistring-1.1-7.fc41.i686 libutempter-1.2.1-13.fc40.i686 libuuid-2.40-13.fc41.i686 libverto-0.3.2-8.fc40.i686 libxcrypt-4.4.36-5.fc40.i686 libxml2-2.12.6-1.fc41.i686 libzstd-1.5.6-1.fc41.i686 lua-libs-5.4.6-5.fc40.i686 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.i686 mpfr-4.2.1-3.fc40.i686 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.i686 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.7-1.fc40.i686 openssl-libs-3.2.1-6.fc41.i686 p11-kit-0.25.3-4.fc40.i686 p11-kit-trust-0.25.3-4.fc40.i686 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-1.fc41.i686 pam-libs-1.6.1-1.fc41.i686 patch-2.7.6-24.fc40.i686 pcre2-10.43-1.fc41.i686 pcre2-syntax-10.43-1.fc41.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.0-1.fc40.i686 pkgconf-m4-2.1.0-1.fc40.noarch pkgconf-pkg-config-2.1.0-1.fc40.i686 popt-1.19-6.fc40.i686 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-9.fc41.noarch qt5-srpm-macros-5.15.13-1.fc41.noarch qt6-srpm-macros-6.7.0-1.fc41.noarch readline-8.2-8.fc40.i686 redhat-rpm-config-288-1.fc41.noarch rpm-4.19.1.1-1.fc40.i686 rpm-build-4.19.1.1-1.fc40.i686 rpm-build-libs-4.19.1.1-1.fc40.i686 rpm-libs-4.19.1.1-1.fc40.i686 rpm-sequoia-1.6.0-2.fc40.i686 rust-srpm-macros-26.2-1.fc41.noarch sed-4.9-1.fc40.i686 setup-2.14.5-2.fc40.noarch shadow-utils-4.15.1-2.fc41.i686 sqlite-libs-3.45.2-1.fc41.i686 systemd-libs-255.5-1.fc41.i686 tar-1.35-3.fc40.i686 unzip-6.0-63.fc40.i686 util-linux-2.40-13.fc41.i686 util-linux-core-2.40-13.fc41.i686 which-2.21-41.fc40.i686 xxhash-libs-0.8.2-2.fc40.i686 xz-5.4.6-3.fc41.i686 xz-libs-5.4.6-3.fc41.i686 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.i686 zlib-ng-compat-2.1.6-2.fc40.i686 zstd-1.5.6-1.fc41.i686 Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1714089600 Wrote: /builddir/build/SRPMS/R-Rsamtools-2.18.0-1.fc41.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-40-i686-1714176090.143047/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-40-i686-1714176090.143047/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-5qxx3zff/R-Rsamtools/R-Rsamtools.spec) Config(child) 1 minutes 27 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-Rsamtools-2.18.0-1.fc41.src.rpm) Config(fedora-40-i686) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-i686-bootstrap-1714176090.143047/root. INFO: reusing tmpfs at /var/lib/mock/fedora-40-i686-bootstrap-1714176090.143047/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-i686-1714176090.143047/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 python3-dnf-4.19.2-1.fc40.noarch yum-4.19.2-1.fc40.noarch dnf5-5.1.17-1.fc41.x86_64 dnf5-plugins-5.1.17-1.fc41.x86_64 Finish: chroot init Start: build phase for R-Rsamtools-2.18.0-1.fc41.src.rpm Start: build setup for R-Rsamtools-2.18.0-1.fc41.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1714089600 Wrote: /builddir/build/SRPMS/R-Rsamtools-2.18.0-1.fc41.src.rpm Updating and loading repositories: Copr repository 100% | 27.9 KiB/s | 1.5 KiB | 00m00s local 100% | 8.8 KiB/s | 3.8 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 943.0 B/s | 4.1 KiB | 00m04s Repositories loaded. 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texlive-zref noarch 11:svn62977-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 816.8 KiB tk i686 1:8.6.14-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.7 MiB tk-devel i686 1:8.6.14-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 984.1 KiB tre i686 0.8.0-43.20140228gitc2f5d13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 75.2 KiB tre-common noarch 0.8.0-43.20140228gitc2f5d13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.0 KiB tre-devel i686 0.8.0-43.20140228gitc2f5d13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.7 KiB tzdata noarch 2024a-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB urw-base35-bookman-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-c059-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB 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noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64.9 KiB urw-base35-z003-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 390.8 KiB xdg-utils noarch 1.2.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 346.3 KiB xml-common noarch 0.6.3-63.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB xorg-x11-proto-devel noarch 2024.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB xpdf-libs i686 1:4.05-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB xz-devel i686 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 255.8 KiB zlib-ng-compat-devel i686 2.1.6-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.4 KiB zziplib i686 0.13.72-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 229.7 KiB Transaction Summary: Installing: 683 packages Total size of inbound packages is 490 MiB. 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[ 1/683] R-Biostrings-devel-0:2.64.1-8 100% | 204.1 KiB/s | 13.3 KiB | 00m00s [ 2/683] R-BiocGenerics-0:0.42.0-7.fc4 100% | 4.9 MiB/s | 641.1 KiB | 00m00s [ 3/683] R-BiocParallel-0:1.30.3-7.fc4 100% | 9.5 MiB/s | 1.5 MiB | 00m00s [ 4/683] R-GenomeInfoDb-0:1.32.3-8.fc4 100% | 27.8 MiB/s | 3.8 MiB | 00m00s [ 5/683] R-IRanges-devel-0:2.30.1-8.fc 100% | 247.1 KiB/s | 10.6 KiB | 00m00s [ 6/683] R-S4Vectors-devel-0:0.40.2-1. 100% | 539.8 KiB/s | 14.0 KiB | 00m00s [ 7/683] R-Rhtslib-devel-0:2.4.1-1.fc4 100% | 12.0 MiB/s | 639.1 KiB | 00m00s [ 8/683] R-XVector-devel-0:0.42.0-1.fc 100% | 367.9 KiB/s | 11.0 KiB | 00m00s [ 9/683] R-GenomicRanges-0:1.48.0-8.fc 100% | 14.2 MiB/s | 2.0 MiB | 00m00s [ 10/683] R-devel-0:4.4.0-1.fc41~bootst 100% | 632.2 KiB/s | 10.7 KiB | 00m00s [ 11/683] R-bitops-0:1.0.7-12.fc41.i686 100% | 1.2 MiB/s | 41.8 KiB | 00m00s [ 12/683] R-core-0:4.4.0-1.fc41~bootstr 100% | 76.7 MiB/s | 62.6 MiB | 00m01s [ 13/683] R-Biostrings-0:2.64.1-8.fc41. 100% | 31.4 MiB/s | 13.4 MiB | 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[656/685] Installing R-RCurl-0:1.98.1.8 100% | 117.5 MiB/s | 2.1 MiB | 00m00s [657/685] Installing R-GenomeInfoDb-0:1 100% | 182.9 MiB/s | 4.9 MiB | 00m00s [658/685] Installing R-GenomicRanges-0: 100% | 135.0 MiB/s | 3.6 MiB | 00m00s [659/685] Installing R-Biostrings-0:2.6 100% | 198.9 MiB/s | 15.5 MiB | 00m00s [660/685] Installing R-S4Vectors-0:0.40 100% | 87.9 MiB/s | 4.1 MiB | 00m00s [661/685] Installing R-IRanges-0:2.30.1 100% | 71.8 MiB/s | 3.9 MiB | 00m00s [662/685] Installing R-BiocGenerics-0:0 100% | 84.9 MiB/s | 1.1 MiB | 00m00s [663/685] Installing R-XVector-0:0.42.0 100% | 88.0 MiB/s | 1.1 MiB | 00m00s [664/685] Installing pcre2-utf32-0:10.4 100% | 274.5 MiB/s | 562.1 KiB | 00m00s [665/685] Installing pcre2-utf16-0:10.4 100% | 193.4 MiB/s | 594.2 KiB | 00m00s [666/685] Installing pcre2-devel-0:10.4 100% | 165.8 MiB/s | 2.0 MiB | 00m00s [667/685] Installing libselinux-devel-0 100% | 17.4 MiB/s | 160.6 KiB | 00m00s [668/685] Installing libmount-devel-0:2 100% | 63.0 MiB/s | 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MiB/s | 400.7 KiB | 00m00s [682/685] Installing R-devel-0:4.4.0-1. 100% | 121.1 KiB/s | 124.0 B | 00m00s [683/685] Installing R-BiocParallel-0:1 100% | 112.5 MiB/s | 2.1 MiB | 00m00s [684/685] Installing gcc-plugin-annobin 100% | 2.2 MiB/s | 57.5 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:288-1.fc41.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:288-1.fc41.noarch [685/685] Installing annobin-plugin-gcc 100% | 16.3 KiB/s | 972.2 KiB | 01m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:288-1.fc41.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:288-1.fc41.noarch >>> Running post-transaction scriptlet: texlive-base-11:20230311-84.fc41.i686 >>> Stop post-transaction scriptlet: texlive-base-11:20230311-84.fc41.i686 >>> Running post-transaction scriptlet: urw-base35-z003-fonts-0:20200910-20.fc41 >>> Stop post-transaction scriptlet: urw-base35-z003-fonts-0:20200910-20.fc41.no >>> Running post-transaction scriptlet: urw-base35-standard-symbols-ps-fonts-0:2 >>> Stop post-transaction scriptlet: urw-base35-standard-symbols-ps-fonts-0:2020 >>> Running post-transaction scriptlet: urw-base35-p052-fonts-0:20200910-20.fc41 >>> Stop post-transaction scriptlet: urw-base35-p052-fonts-0:20200910-20.fc41.no >>> Running post-transaction scriptlet: urw-base35-nimbus-sans-fonts-0:20200910- >>> Stop post-transaction scriptlet: urw-base35-nimbus-sans-fonts-0:20200910-20. >>> Running post-transaction scriptlet: urw-base35-nimbus-roman-fonts-0:20200910 >>> Stop post-transaction scriptlet: urw-base35-nimbus-roman-fonts-0:20200910-20 >>> Running post-transaction scriptlet: urw-base35-nimbus-mono-ps-fonts-0:202009 >>> Stop post-transaction scriptlet: urw-base35-nimbus-mono-ps-fonts-0:20200910- >>> Running post-transaction scriptlet: urw-base35-gothic-fonts-0:20200910-20.fc >>> Stop post-transaction scriptlet: urw-base35-gothic-fonts-0:20200910-20.fc41. >>> Running post-transaction scriptlet: 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trigger-install scriptlet: glib2-0:2.80.0-1.fc41.i686 >>> Stop trigger-install scriptlet: glib2-0:2.80.0-1.fc41.i686 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-4.fc40.i686 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-4.fc40.i686 >>> Running trigger-install scriptlet: texlive-kpathsea-11:svn66209-84.fc41.i686 >>> Stop trigger-install scriptlet: texlive-kpathsea-11:svn66209-84.fc41.i686 >>> Running trigger-install scriptlet: texlive-kpathsea-11:svn66209-84.fc41.i686 >>> Stop trigger-install scriptlet: texlive-kpathsea-11:svn66209-84.fc41.i686 >>> Running trigger-install scriptlet: texlive-kpathsea-11:svn66209-84.fc41.i686 >>> Stop trigger-install scriptlet: texlive-kpathsea-11:svn66209-84.fc41.i686 Warning: skipped PGP checks for 683 package(s). Finish: build setup for R-Rsamtools-2.18.0-1.fc41.src.rpm Start: rpmbuild R-Rsamtools-2.18.0-1.fc41.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1714089600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.E5q7lX + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Rsamtools + /usr/bin/mkdir -p Rsamtools + cd Rsamtools + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Rsamtools_2.18.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/Rsamtools-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/Rsamtools-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + pushd Rsamtools ~/build/BUILD/Rsamtools/Rsamtools ~/build/BUILD/Rsamtools Patch #0 (0001-format-security-fix.patch): + echo 'Patch #0 (0001-format-security-fix.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 patching file src/samtools_patch.c patching file src/zip_compression.c ~/build/BUILD/Rsamtools + popd + sed -i 's|zlibbioc, ||g' Rsamtools/DESCRIPTION + sed -i '/import(zlibbioc)/d' Rsamtools/NAMESPACE + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.LJnCzm + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rsamtools + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.XxIk3q + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-Rsamtools-2.18.0-1.fc41.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-Rsamtools-2.18.0-1.fc41.i386 ++ dirname /builddir/build/BUILDROOT/R-Rsamtools-2.18.0-1.fc41.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-Rsamtools-2.18.0-1.fc41.i386 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rsamtools + mkdir -p /builddir/build/BUILDROOT/R-Rsamtools-2.18.0-1.fc41.i386/usr/lib/R/library + R CMD INSTALL -l /builddir/build/BUILDROOT/R-Rsamtools-2.18.0-1.fc41.i386/usr/lib/R/library Rsamtools * installing *source* package ‘Rsamtools’ ... ** using staged installation ** libs using C compiler: ‘gcc (GCC) 14.0.1 20240411 (Red Hat 14.0.1-0)’ using C++ compiler: ‘g++ (GCC) 14.0.1 20240411 (Red Hat 14.0.1-0)’ gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c Biostrings_stubs.c -o Biostrings_stubs.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c COMPAT_bcf_hdr_read.c -o COMPAT_bcf_hdr_read.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c IRanges_stubs.c -o IRanges_stubs.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c PileupBuffer.cpp -o PileupBuffer.o In file included from /usr/lib/R/library/Rhtslib/include/bam_plbuf.h:28, from PileupBuffer.h:10, from PileupBuffer.cpp:1: /usr/lib/R/library/Rhtslib/include/htslib/sam.h: In function ‘const uint8_t* sam_format_aux1(const uint8_t*, uint8_t, const uint8_t*, const uint8_t*, kstring_t*)’: /usr/lib/R/library/Rhtslib/include/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 1550 | if ((end - s) / sub_type_size < n) | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c PosCacheColl.cpp -o PosCacheColl.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c R_init_Rsamtools.c -o R_init_Rsamtools.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c ResultManager.cpp -o ResultManager.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c XVector_stubs.c -o XVector_stubs.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c as_bam.c -o as_bam.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c bam_data.c -o bam_data.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c bam_mate_iter.cpp -o bam_mate_iter.o In file included from /usr/lib/R/library/Rhtslib/include/samtools-1.7-compat.h:5, from Template.h:9, from BamIterator.h:10, from BamRangeIterator.h:7, from bam_mate_iter.cpp:2: /usr/lib/R/library/Rhtslib/include/htslib/sam.h: In function ‘const uint8_t* sam_format_aux1(const uint8_t*, uint8_t, const uint8_t*, const uint8_t*, kstring_t*)’: /usr/lib/R/library/Rhtslib/include/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 1550 | if ((end - s) / sub_type_size < n) | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ BamRangeIterator.h: In member function ‘virtual void BamRangeIterator::finalize_inprogress(bamFile)’: /usr/lib/R/library/Rhtslib/include/samtools-1.7-compat.h:14:41: warning: ignoring return value of ‘int64_t bgzf_seek(BGZF*, int64_t, int)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 14 | #define bam_seek(fp, pos, dir) bgzf_seek(fp, pos, dir) | ~~~~~~~~~^~~~~~~~~~~~~~ BamRangeIterator.h:138:16: note: in expansion of macro ‘bam_seek’ 138 | (void) bam_seek(bfile, pos, SEEK_SET); | ^~~~~~~~ BamIterator.h: In constructor ‘BamIterator::BamIterator(bamFile, const bam_index_t*)’: /usr/lib/R/library/Rhtslib/include/samtools-1.7-compat.h:14:41: warning: ignoring return value of ‘int64_t bgzf_seek(BGZF*, int64_t, int)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 14 | #define bam_seek(fp, pos, dir) bgzf_seek(fp, pos, dir) | ~~~~~~~~~^~~~~~~~~~~~~~ BamIterator.h:87:16: note: in expansion of macro ‘bam_seek’ 87 | (void) bam_seek(bfile, 0, 0); | ^~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c bam_plbuf.c -o bam_plbuf.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c bam_sort.c -o bam_sort.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c bambuffer.c -o bambuffer.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c bamfile.c -o bamfile.o bamfile.c: In function ‘bamfile_isincomplete’: bamfile.c:168:20: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 168 | (void) bgzf_seek(bfile->file->x.bam, offset, SEEK_SET); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘_bam_tryindexload’, inlined from ‘_bamfile_open_r’ at bamfile.c:89:24, inlined from ‘bamfile_open’ at bamfile.c:127:17: bamfile.c:29:17: warning: ‘cfile’ may be used uninitialized [-Wmaybe-uninitialized] 29 | index = hts_idx_load2(file, indexname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bamfile.c: In function ‘bamfile_open’: bamfile.c:73:17: note: ‘cfile’ was declared here 73 | const char *cfile; | ^~~~~ gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c bcffile.c -o bcffile.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c bedidx.c -o bedidx.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c encode.c -o encode.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c fafile.c -o fafile.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c idxstats.c -o idxstats.o In file included from bamfile.h:5, from idxstats.c:1: idxstats.c: In function ‘idxstats_bamfile’: /usr/lib/R/library/Rhtslib/include/samtools-1.7-compat.h:14:32: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 14 | #define bam_seek(fp, pos, dir) bgzf_seek(fp, pos, dir) | ^~~~~~~~~~~~~~~~~~~~~~~ idxstats.c:20:12: note: in expansion of macro ‘bam_seek’ 20 | (void) bam_seek(fp, 0, 0); | ^~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c io_sam.c -o io_sam.o In file included from io_sam.c:2: io_sam.c: In function ‘_scan_bam_all’: /usr/lib/R/library/Rhtslib/include/samtools-1.7-compat.h:14:32: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 14 | #define bam_seek(fp, pos, dir) bgzf_seek(fp, pos, dir) | ^~~~~~~~~~~~~~~~~~~~~~~ io_sam.c:307:12: note: in expansion of macro ‘bam_seek’ 307 | (void) bam_seek(bfile->file->x.bam, bfile->pos0, SEEK_SET); | ^~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c pbuffer_wrapper.cpp -o pbuffer_wrapper.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c pileup.cpp -o pileup.o In file included from /usr/lib/R/library/Rhtslib/include/samtools-1.7-compat.h:5, from bamfile.h:5, from bam_data.h:5, from io_sam.h:5, from pileup.h:6, from pileup.cpp:1: /usr/lib/R/library/Rhtslib/include/htslib/sam.h: In function ‘const uint8_t* sam_format_aux1(const uint8_t*, uint8_t, const uint8_t*, const uint8_t*, kstring_t*)’: /usr/lib/R/library/Rhtslib/include/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 1550 | if ((end - s) / sub_type_size < n) | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c pileupbam.c -o pileupbam.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c sam_opts.c -o sam_opts.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c sam_utils.c -o sam_utils.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c samtools_patch.c -o samtools_patch.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c scan_bam_data.c -o scan_bam_data.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c tabixfile.c -o tabixfile.o tabixfile.c: In function ‘index_tabix’: tabixfile.c:190:5: warning: ‘bgzf_is_bgzf’ is deprecated: Use bgzf_compression() or hts_detect_format() instead [-Wdeprecated-declarations] 190 | if (bgzf_is_bgzf(fn) != 1) | ^~ In file included from tabixfile.c:3: /usr/lib/R/library/Rhtslib/include/htslib/bgzf.h:270:9: note: declared here 270 | int bgzf_is_bgzf(const char *fn) HTS_DEPRECATED("Use bgzf_compression() or hts_detect_format() instead"); | ^~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c tagfilter.c -o tagfilter.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c utilities.c -o utilities.o gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/library/Rhtslib/include' -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I'/usr/lib/R/library/Biostrings/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c zip_compression.c -o zip_compression.o g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o Rsamtools.so Biostrings_stubs.o COMPAT_bcf_hdr_read.o IRanges_stubs.o PileupBuffer.o PosCacheColl.o R_init_Rsamtools.o ResultManager.o S4Vectors_stubs.o XVector_stubs.o as_bam.o bam_data.o bam_mate_iter.o bam_plbuf.o bam_sort.o bambuffer.o bamfile.o bcffile.o bedidx.o encode.o fafile.o idxstats.o io_sam.o pbuffer_wrapper.o pileup.o pileupbam.o sam_opts.o sam_utils.o samtools_patch.o scan_bam_data.o tabixfile.o tagfilter.o utilities.o zip_compression.o /usr/lib/R/library/Rhtslib/usrlib/libhts.a -lcurl -lbz2 -llzma -lz -L/usr/lib/R/lib -lR installing to /builddir/build/BUILDROOT/R-Rsamtools-2.18.0-1.fc41.i386/usr/lib/R/library/00LOCK-Rsamtools/00new/Rsamtools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘Rsamtools’ finding HTML links ... done ApplyPileupsParam-class html BamFile-class html finding level-2 HTML links ... done BamViews-class html BcfFile-class html FaFile-class html PileupFiles-class html Rsamtools-package html RsamtoolsFile-class html RsamtoolsFileList-class html ScanBamParam-class html ScanBcfParam-class html TabixFile-class html applyPileups html defunct html deprecated html headerTabix html indexTabix html pileup html quickBamFlagSummary html readPileup html scanBam html scanBcf html scanFa html scanTabix html seqnamesTabix html testPairedEndBam html zip html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rsamtools) + test -d Rsamtools/src + cd Rsamtools/src + rm -f Biostrings_stubs.o COMPAT_bcf_hdr_read.o IRanges_stubs.o PileupBuffer.o PosCacheColl.o R_init_Rsamtools.o ResultManager.o S4Vectors_stubs.o XVector_stubs.o as_bam.o bam_data.o bam_mate_iter.o bam_plbuf.o bam_sort.o bambuffer.o bamfile.o bcffile.o bedidx.o encode.o fafile.o idxstats.o io_sam.o pbuffer_wrapper.o pileup.o pileupbam.o sam_opts.o sam_utils.o samtools_patch.o scan_bam_data.o tabixfile.o tagfilter.o utilities.o zip_compression.o Rsamtools.so + rm -f /builddir/build/BUILDROOT/R-Rsamtools-2.18.0-1.fc41.i386/usr/lib/R/library/R.css + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.18.0-1.fc41 --unique-debug-suffix -2.18.0-1.fc41.i386 --unique-debug-src-base R-Rsamtools-2.18.0-1.fc41.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/Rsamtools find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-Rsamtools-2.18.0-1.fc41.i386 488 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/lib/R/library/Rsamtools/scripts/update-samtools.sh from /bin/sh to #!/usr/bin/sh + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Iu59cj + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rsamtools + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-Rsamtools-2.18.0-1.fc41.i686 Provides: R(Rsamtools) = 2.18.0 R-Rsamtools = 2.18.0-1.fc41 R-Rsamtools(x86-32) = 2.18.0-1.fc41 R-Rsamtools-devel = 2.18.0-1.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh R(ABI) = 4.4 R(BiocGenerics) >= 0.25.1 R(BiocParallel) R(Biostrings) >= 2.47.6 R(GenomeInfoDb) >= 1.1.3 R(GenomicRanges) >= 1.31.8 R(IRanges) >= 2.13.12 R(S4Vectors) >= 0.17.25 R(XVector) >= 0.19.7 R(bitops) R(methods) R(stats) R(utils) R-core >= 3.5.0 libR.so libbz2.so.1 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.2) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.33) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libc.so.6(GLIBC_ABI_DT_RELR) libcurl.so.4 libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_3.3.1) libgcc_s.so.1(GCC_7.0.0) libgcc_s.so.1(GLIBC_2.0) liblzma.so.5 liblzma.so.5(XZ_5.0) libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.29) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.29) libstdc++.so.6(GLIBCXX_3.4.30) libz.so.1 libz.so.1(ZLIB_1.2.3.3) rtld(GNU_HASH) Obsoletes: R-Rsamtools-devel <= 1.34.1 Suggests: R(GenomicAlignments) R(RUnit) R(knitr) Processing files: R-Rsamtools-debugsource-2.18.0-1.fc41.i686 Provides: R-Rsamtools-debugsource = 2.18.0-1.fc41 R-Rsamtools-debugsource(x86-32) = 2.18.0-1.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Rsamtools-debuginfo-2.18.0-1.fc41.i686 Provides: R-Rsamtools-debuginfo = 2.18.0-1.fc41 R-Rsamtools-debuginfo(x86-32) = 2.18.0-1.fc41 debuginfo(build-id) = ea58853d938dd5ff16b66c2df341a993e1628996 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-Rsamtools-debugsource(x86-32) = 2.18.0-1.fc41 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-Rsamtools-2.18.0-1.fc41.i386 Wrote: /builddir/build/RPMS/R-Rsamtools-debuginfo-2.18.0-1.fc41.i686.rpm Wrote: /builddir/build/RPMS/R-Rsamtools-debugsource-2.18.0-1.fc41.i686.rpm Wrote: /builddir/build/RPMS/R-Rsamtools-2.18.0-1.fc41.i686.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.pUtOSk + umask 022 + cd /builddir/build/BUILD + cd Rsamtools + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-Rsamtools-2.18.0-1.fc41.i386 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.TmXEDX + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/Rsamtools-SPECPARTS + rm -rf Rsamtools Rsamtools.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild R-Rsamtools-2.18.0-1.fc41.src.rpm Finish: build phase for R-Rsamtools-2.18.0-1.fc41.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-40-i686-1714176090.143047/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/R-Rsamtools-2.18.0-1.fc41.src.rpm) Config(child) 2 minutes 25 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-Rsamtools", "epoch": null, "version": "2.18.0", "release": "1.fc41", "arch": "src" }, { "name": "R-Rsamtools-debuginfo", "epoch": null, "version": "2.18.0", "release": "1.fc41", "arch": "i686" }, { "name": "R-Rsamtools-debugsource", "epoch": null, "version": "2.18.0", "release": "1.fc41", "arch": "i686" }, { "name": "R-Rsamtools", "epoch": null, "version": "2.18.0", "release": "1.fc41", "arch": "i686" } ] } RPMResults finished