Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c2a2' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7508323-fedora-40-ppc64le --chroot fedora-40-ppc64le


Version: 0.73
PID: 32176
Logging PID: 32177
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 7508323,
 'buildroot_pkgs': [],
 'chroot': 'fedora-40-ppc64le',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '5c68f6a9db36083946686b5cb383a461971aec92',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'mmseq',
 'package_version': '1.0.11-19',
 'project_dirname': 'openblas-0.3.23',
 'project_name': 'openblas-0.3.23',
 'project_owner': 'psimovec',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-40-ppc64le/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/',
            'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch',
            'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}],
 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/churchyard',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'submitter': 'https://src.fedoraproject.org/user/churchyard',
 'tags': [],
 'task_id': '7508323-fedora-40-ppc64le',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq /var/lib/copr-rpmbuild/workspace/workdir-8fe6egxs/mmseq --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq', '/var/lib/copr-rpmbuild/workspace/workdir-8fe6egxs/mmseq', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-8fe6egxs/mmseq'...

Running: git checkout 5c68f6a9db36083946686b5cb383a461971aec92 --

cmd: ['git', 'checkout', '5c68f6a9db36083946686b5cb383a461971aec92', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-8fe6egxs/mmseq
rc: 0
stdout: 
stderr: Note: switching to '5c68f6a9db36083946686b5cb383a461971aec92'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 5c68f6a automatic import of mmseq

Running: copr-distgit-client sources

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-8fe6egxs/mmseq
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading 1.0.11.zip
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
INFO: Calling: curl -H Pragma: -o 1.0.11.zip --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/mmseq/1.0.11.zip/md5/c727916d339d7a2111523800b621ce2b/1.0.11.zip
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 2781k  100 2781k    0     0  22.4M      0 --:--:-- --:--:-- --:--:-- 22.4M
INFO: Reading stdout from command: md5sum 1.0.11.zip

Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-8fe6egxs/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-8fe6egxs/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1717079273.067125 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-8fe6egxs/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-8fe6egxs/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1717079273.067125 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-8fe6egxs/mmseq/mmseq.spec)  Config(fedora-40-ppc64le)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.6
INFO: Mock Version: 5.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-40-ppc64le-bootstrap-1717079273.067125/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:40
INFO: Pulling image: registry.fedoraproject.org/fedora:40
INFO: Copy content of container registry.fedoraproject.org/fedora:40 to /var/lib/mock/fedora-40-ppc64le-bootstrap-1717079273.067125/root
INFO: Checking that registry.fedoraproject.org/fedora:40 image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:40 with podman image mount
INFO: image registry.fedoraproject.org/fedora:40 as /var/lib/containers/storage/overlay/53f5bf57c85a35e33fa13ab6d40185042e27ab44db38ae2b923e5d368981f3f5/merged
INFO: umounting image registry.fedoraproject.org/fedora:40 (/var/lib/containers/storage/overlay/53f5bf57c85a35e33fa13ab6d40185042e27ab44db38ae2b923e5d368981f3f5/merged) with podman image umount
INFO: Using 'dnf' instead of 'dnf5' for bootstrap chroot
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf5 tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  12 MB/s | 2.9 MB     00:00    
Additional repo http_kojipkgs_fedoraproject_org  21 MB/s |  17 MB     00:00    
fedora                                          8.8 MB/s |  18 MB     00:02    
updates                                         8.5 MB/s | 6.1 MB     00:00    
Last metadata expiration check: 0:00:02 ago on Thu May 30 14:28:18 2024.
Dependencies resolved.
============================================================================================================
 Package        Arch     Version        Repository                                                      Size
============================================================================================================
Installing:
 dnf5           ppc64le  5.2.2.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  682 k
     replacing  dnf.noarch 4.19.2-1.fc40
     replacing  yum.noarch 4.19.2-1.fc40
 dnf5-plugins   ppc64le  5.2.2.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  356 k
Upgrading:
 dnf-data       noarch   4.20.0-1.fc41  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   39 k
 python3-dnf    noarch   4.20.0-1.fc41  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  580 k
Installing dependencies:
 fmt            ppc64le  10.2.1-4.fc41  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  147 k
 libdnf5        ppc64le  5.2.2.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.0 M
 libdnf5-cli    ppc64le  5.2.2.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  312 k
 sdbus-cpp      ppc64le  1.5.0-2.fc41   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  109 k

Transaction Summary
============================================================================================================
Install  6 Packages
Upgrade  2 Packages

Total download size: 3.2 M
Downloading Packages:
(1/8): dnf5-5.2.2.0-1.fc41.ppc64le.rpm          6.2 MB/s | 682 kB     00:00    
(2/8): fmt-10.2.1-4.fc41.ppc64le.rpm            1.3 MB/s | 147 kB     00:00    
(3/8): dnf5-plugins-5.2.2.0-1.fc41.ppc64le.rpm  3.0 MB/s | 356 kB     00:00    
(4/8): libdnf5-5.2.2.0-1.fc41.ppc64le.rpm        28 MB/s | 1.0 MB     00:00    
(5/8): sdbus-cpp-1.5.0-2.fc41.ppc64le.rpm       3.7 MB/s | 109 kB     00:00    
(6/8): libdnf5-cli-5.2.2.0-1.fc41.ppc64le.rpm   7.4 MB/s | 312 kB     00:00    
(7/8): dnf-data-4.20.0-1.fc41.noarch.rpm        1.8 MB/s |  39 kB     00:00    
(8/8): python3-dnf-4.20.0-1.fc41.noarch.rpm      13 MB/s | 580 kB     00:00    
--------------------------------------------------------------------------------
Total                                            16 MB/s | 3.2 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : fmt-10.2.1-4.fc41.ppc64le                             1/12 
  Installing       : libdnf5-5.2.2.0-1.fc41.ppc64le                        2/12 
warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew

  Installing       : libdnf5-cli-5.2.2.0-1.fc41.ppc64le                    3/12 
  Installing       : sdbus-cpp-1.5.0-2.fc41.ppc64le                        4/12 
  Installing       : dnf5-5.2.2.0-1.fc41.ppc64le                           5/12 
  Upgrading        : dnf-data-4.20.0-1.fc41.noarch                         6/12 
  Upgrading        : python3-dnf-4.20.0-1.fc41.noarch                      7/12 
  Installing       : dnf5-plugins-5.2.2.0-1.fc41.ppc64le                   8/12 
  Obsoleting       : yum-4.19.2-1.fc40.noarch                              9/12 
  Running scriptlet: dnf-4.19.2-1.fc40.noarch                             10/12 
  Obsoleting       : dnf-4.19.2-1.fc40.noarch                             10/12 
warning: directory /var/cache/dnf: remove failed: Device or resource busy

  Running scriptlet: dnf-4.19.2-1.fc40.noarch                             10/12 
  Cleanup          : python3-dnf-4.19.2-1.fc40.noarch                     11/12 
  Cleanup          : dnf-data-4.19.2-1.fc40.noarch                        12/12 
  Running scriptlet: dnf-data-4.19.2-1.fc40.noarch                        12/12 

Upgraded:
  dnf-data-4.20.0-1.fc41.noarch         python3-dnf-4.20.0-1.fc41.noarch        
Installed:
  dnf5-5.2.2.0-1.fc41.ppc64le            dnf5-plugins-5.2.2.0-1.fc41.ppc64le    
  fmt-10.2.1-4.fc41.ppc64le              libdnf5-5.2.2.0-1.fc41.ppc64le         
  libdnf5-cli-5.2.2.0-1.fc41.ppc64le     sdbus-cpp-1.5.0-2.fc41.ppc64le         

Complete!
INFO: Switching package manager from dnf to the dnf5 (direct choice)
Finish(bootstrap): installing dnf5 tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-40-ppc64le-1717079273.067125/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1.1-1.fc40.ppc64le
  rpm-sequoia-1.6.0-3.fc40.ppc64le
  python3-dnf-4.20.0-1.fc41.noarch
  dnf5-5.2.2.0-1.fc41.ppc64le
  dnf5-plugins-5.2.2.0-1.fc41.ppc64le
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 updates                                100% | 167.8 KiB/s |   4.9 KiB |  00m00s
 fedora                                 100% | 152.4 KiB/s |   3.8 KiB |  00m00s
 Copr repository                        100% |  31.4 KiB/s |   1.5 KiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% |  44.4 KiB/s |   4.1 KiB |  00m00s
 Copr repository                        100% |  15.1 MiB/s |   2.9 MiB |  00m00s
Repositories loaded.
Package                            Arch    Version                    Repository                                                         Size
Installing group/module packages:
 bash                              ppc64le 5.2.26-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.7 MiB
 bzip2                             ppc64le 1.0.8-18.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 427.5 KiB
 coreutils                         ppc64le 9.5-1.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.3 MiB
 cpio                              ppc64le 2.15-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 diffutils                         ppc64le 3.10-5.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 MiB
 fedora-release-common             noarch  41-0.13                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.2 KiB
 findutils                         ppc64le 1:4.9.0-8.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 gawk                              ppc64le 5.3.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.5 MiB
 glibc-minimal-langpack            ppc64le 2.39.9000-18.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 grep                              ppc64le 3.11-8.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 gzip                              ppc64le 1.13-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 552.8 KiB
 info                              ppc64le 7.1-2.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 677.5 KiB
 patch                             ppc64le 2.7.6-24.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 390.5 KiB
 redhat-rpm-config                 noarch  291-1.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183.5 KiB
 rpm-build                         ppc64le 4.19.91-4.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 sed                               ppc64le 4.9-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 shadow-utils                      ppc64le 2:4.15.1-5.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.4 MiB
 tar                               ppc64le 2:1.35-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.2 MiB
 unzip                             ppc64le 6.0-63.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 854.4 KiB
 util-linux                        ppc64le 2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  17.8 MiB
 which                             ppc64le 2.21-41.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 248.0 KiB
 xz                                ppc64le 1:5.4.6-3.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
Installing dependencies:
 add-determinism-nopython          ppc64le 0.2.0-9.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.7 MiB
 alternatives                      ppc64le 1.27-1.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 218.2 KiB
 ansible-srpm-macros               noarch  1-15.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.7 KiB
 audit-libs                        ppc64le 4.0.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 675.2 KiB
 authselect                        ppc64le 1.5.0-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 309.4 KiB
 authselect-libs                   ppc64le 1.5.0-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 931.7 KiB
 basesystem                        noarch  11-20.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 binutils                          ppc64le 2.42.50-11.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  32.8 MiB
 binutils-gold                     ppc64le 2.42.50-11.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.8 MiB
 build-reproducibility-srpm-macros noarch  0.2.0-9.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 769.0   B
 bzip2-libs                        ppc64le 1.0.8-18.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 200.6 KiB
 ca-certificates                   noarch  2023.2.62_v7.0.401-6.fc40  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 coreutils-common                  ppc64le 9.5-1.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.2 MiB
 cracklib                          ppc64le 2.9.11-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 934.2 KiB
 crypto-policies                   noarch  20240521-1.gitf71d135.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 120.0 KiB
 curl                              ppc64le 8.8.0-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 871.7 KiB
 cyrus-sasl-lib                    ppc64le 2.1.28-22.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.5 MiB
 debugedit                         ppc64le 5.0-16.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 499.1 KiB
 dwz                               ppc64le 0.15-6.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 450.8 KiB
 ed                                ppc64le 1.20.2-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 282.7 KiB
 efi-srpm-macros                   noarch  5-11.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.1 KiB
 elfutils                          ppc64le 0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.3 MiB
 elfutils-debuginfod-client        ppc64le 0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 396.5 KiB
 elfutils-default-yama-scope       noarch  0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 KiB
 elfutils-libelf                   ppc64le 0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 MiB
 elfutils-libs                     ppc64le 0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 fedora-gpg-keys                   noarch  41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 124.7 KiB
 fedora-release                    noarch  41-0.13                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 fedora-release-identity-basic     noarch  41-0.13                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0   B
 fedora-repos                      noarch  41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.9 KiB
 fedora-repos-rawhide              noarch  41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 file                              ppc64le 5.45-5.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 267.4 KiB
 file-libs                         ppc64le 5.45-5.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  10.1 MiB
 filesystem                        ppc64le 3.18-9.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.0   B
 fonts-srpm-macros                 noarch  1:2.0.5-14.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.3 KiB
 forge-srpm-macros                 noarch  0.3.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.0 KiB
 fpc-srpm-macros                   noarch  1.3-12.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0   B
 gdb-minimal                       ppc64le 14.2-9.fc41                copr_base                                                      13.8 MiB
 gdbm                              ppc64le 1:1.23-6.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 928.3 KiB
 gdbm-libs                         ppc64le 1:1.23-6.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 425.5 KiB
 ghc-srpm-macros                   noarch  1.9.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 747.0   B
 glibc                             ppc64le 2.39.9000-18.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.3 MiB
 glibc-common                      ppc64le 2.39.9000-18.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.6 MiB
 glibc-gconv-extra                 ppc64le 2.39.9000-18.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  48.9 MiB
 gmp                               ppc64le 1:6.3.0-1.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 850.3 KiB
 gnat-srpm-macros                  noarch  6-5.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 KiB
 go-srpm-macros                    noarch  3.6.0-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  60.8 KiB
 jansson                           ppc64le 2.13.1-9.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 220.3 KiB
 kernel-srpm-macros                noarch  1.0-23.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 keyutils-libs                     ppc64le 1.6.3-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 226.1 KiB
 krb5-libs                         ppc64le 1.21.2-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.8 MiB
 libacl                            ppc64le 2.3.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 195.7 KiB
 libarchive                        ppc64le 3.7.4-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 MiB
 libattr                           ppc64le 2.5.2-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 196.2 KiB
 libblkid                          ppc64le 2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 482.6 KiB
 libbrotli                         ppc64le 1.1.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 MiB
 libcap                            ppc64le 2.70-1.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 libcap-ng                         ppc64le 0.8.5-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 416.5 KiB
 libcom_err                        ppc64le 1.47.0-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 239.1 KiB
 libcurl                           ppc64le 8.8.0-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 libeconf                          ppc64le 0.6.2-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 206.0 KiB
 libevent                          ppc64le 2.1.12-13.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 libfdisk                          ppc64le 2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 547.0 KiB
 libffi                            ppc64le 3.4.6-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 218.0 KiB
 libgcc                            ppc64le 14.1.1-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 350.4 KiB
 libgomp                           ppc64le 14.1.1-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 695.4 KiB
 libidn2                           ppc64le 2.3.7-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.8 KiB
 libmount                          ppc64le 2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 548.0 KiB
 libnghttp2                        ppc64le 1.62.0-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 262.1 KiB
 libnsl2                           ppc64le 2.0.1-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 221.8 KiB
 libpkgconf                        ppc64le 2.1.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 198.0 KiB
 libpsl                            ppc64le 0.21.5-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 196.2 KiB
 libpwquality                      ppc64le 1.4.5-9.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 librtas                           ppc64le 2.0.6-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 497.6 KiB
 libselinux                        ppc64le 3.6-4.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 329.1 KiB
 libsemanage                       ppc64le 3.6-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 489.5 KiB
 libsepol                          ppc64le 3.6-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 libsmartcols                      ppc64le 2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 353.5 KiB
 libssh                            ppc64le 0.10.6-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 709.4 KiB
 libssh-config                     noarch  0.10.6-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.0   B
 libstdc++                         ppc64le 14.1.1-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.8 MiB
 libtasn1                          ppc64le 4.19.0-6.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 347.4 KiB
 libtirpc                          ppc64le 1.3.4-1.rc3.fc41           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 338.8 KiB
 libtool-ltdl                      ppc64le 2.4.7-10.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 222.1 KiB
 libunistring                      ppc64le 1.1-7.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 libutempter                       ppc64le 1.2.1-13.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 417.5 KiB
 libuuid                           ppc64le 2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 197.3 KiB
 libverto                          ppc64le 0.3.2-8.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 197.2 KiB
 libxcrypt                         ppc64le 4.4.36-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 398.6 KiB
 libxml2                           ppc64le 2.12.7-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.5 MiB
 libzstd                           ppc64le 1.5.6-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 988.0 KiB
 lua-libs                          ppc64le 5.4.6-5.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.9 KiB
 lua-srpm-macros                   noarch  1-13.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 KiB
 lz4-libs                          ppc64le 1.9.4-6.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 325.1 KiB
 mpfr                              ppc64le 4.2.1-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 976.9 KiB
 ncurses-base                      noarch  6.4-12.20240127.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.2 KiB
 ncurses-libs                      ppc64le 6.4-12.20240127.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.4 MiB
 ocaml-srpm-macros                 noarch  10-1.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 openblas-srpm-macros              noarch  2-17.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0   B
 openldap                          ppc64le 2.6.8-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 openssl-libs                      ppc64le 1:3.2.1-6.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.6 MiB
 p11-kit                           ppc64le 0.25.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.1 MiB
 p11-kit-trust                     ppc64le 0.25.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 655.4 KiB
 package-notes-srpm-macros         noarch  0.5-11.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 KiB
 pam                               ppc64le 1.6.1-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.0 MiB
 pam-libs                          ppc64le 1.6.1-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 606.5 KiB
 pcre2                             ppc64le 10.43-2.fc41.1             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 968.9 KiB
 pcre2-syntax                      noarch  10.43-2.fc41.1             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 249.0 KiB
 perl-srpm-macros                  noarch  1-53.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0   B
 pkgconf                           ppc64le 2.1.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 238.7 KiB
 pkgconf-m4                        noarch  2.1.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.9 KiB
 pkgconf-pkg-config                ppc64le 2.1.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 990.0   B
 popt                              ppc64le 1.19-6.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 272.8 KiB
 publicsuffix-list-dafsa           noarch  20240107-3.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.5 KiB
 pyproject-srpm-macros             noarch  1.12.0-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 KiB
 python-srpm-macros                noarch  3.12-9.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  50.5 KiB
 qt5-srpm-macros                   noarch  5.15.13-1.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 492.0   B
 qt6-srpm-macros                   noarch  6.7.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0   B
 readline                          ppc64le 8.2-8.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 817.1 KiB
 rpm                               ppc64le 4.19.91-4.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.8 MiB
 rpm-build-libs                    ppc64le 4.19.91-4.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.6 KiB
 rpm-libs                          ppc64le 4.19.91-4.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 rpm-sequoia                       ppc64le 1.6.0-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.7 MiB
 rust-srpm-macros                  noarch  26.3-1.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.8 KiB
 setup                             noarch  2.15.0-3.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB
 sqlite-libs                       ppc64le 3.45.3-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 systemd-libs                      ppc64le 256~rc3-3.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.0 MiB
 util-linux-core                   ppc64le 2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.2 MiB
 xxhash-libs                       ppc64le 0.8.2-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 211.9 KiB
 xz-libs                           ppc64le 1:5.4.6-3.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 329.5 KiB
 zig-srpm-macros                   noarch  1-2.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 KiB
 zip                               ppc64le 3.0-40.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 zlib-ng-compat                    ppc64le 2.1.6-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 261.6 KiB
 zstd                              ppc64le 1.5.6-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.1 MiB
Installing groups:
 Buildsystem building group                                                                                                                  

Transaction Summary:
 Installing:      156 packages

Total size of inbound packages is 58 MiB. Need to download 0 B.
After this operation 330 MiB will be used (install 330 MiB, remove 0 B).
[  1/156] tar-2:1.35-3.fc40.ppc64le     100% |   0.0   B/s |   0.0   B |  00m00s
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[  2/156] bzip2-0:1.0.8-18.fc40.ppc64le 100% |   0.0   B/s |   0.0   B |  00m00s
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[  3/156] redhat-rpm-config-0:291-1.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[  4/156] rpm-build-0:4.19.91-4.fc41.pp 100% |   0.0   B/s |   0.0   B |  00m00s
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[  5/156] unzip-0:6.0-63.fc40.ppc64le   100% |   0.0   B/s |   0.0   B |  00m00s
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[  6/156] cpio-0:2.15-1.fc40.ppc64le    100% |   0.0   B/s |   0.0   B |  00m00s
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[  7/156] which-0:2.21-41.fc40.ppc64le  100% |   0.0   B/s |   0.0   B |  00m00s
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[  8/156] bash-0:5.2.26-3.fc40.ppc64le  100% |   0.0   B/s |   0.0   B |  00m00s
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[  9/156] coreutils-0:9.5-1.fc41.ppc64l 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 10/156] grep-0:3.11-8.fc41.ppc64le    100% |   0.0   B/s |   0.0   B |  00m00s
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[ 11/156] patch-0:2.7.6-24.fc40.ppc64le 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 12/156] sed-0:4.9-1.fc40.ppc64le      100% |   0.0   B/s |   0.0   B |  00m00s
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[ 13/156] shadow-utils-2:4.15.1-5.fc41. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 14/156] util-linux-0:2.40.1-1.fc41.pp 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 15/156] diffutils-0:3.10-5.fc40.ppc64 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 16/156] fedora-release-common-0:41-0. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 17/156] findutils-1:4.9.0-8.fc40.ppc6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 18/156] gawk-0:5.3.0-3.fc40.ppc64le   100% |   0.0   B/s |   0.0   B |  00m00s
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[ 19/156] glibc-minimal-langpack-0:2.39 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 20/156] gzip-0:1.13-1.fc40.ppc64le    100% |   0.0   B/s |   0.0   B |  00m00s
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[ 21/156] info-0:7.1-2.fc40.ppc64le     100% |   0.0   B/s |   0.0   B |  00m00s
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[ 22/156] xz-1:5.4.6-3.fc41.ppc64le     100% |   0.0   B/s |   0.0   B |  00m00s
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[ 23/156] rpm-0:4.19.91-4.fc41.ppc64le  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 24/156] coreutils-common-0:9.5-1.fc41 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 25/156] libblkid-0:2.40.1-1.fc41.ppc6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 26/156] libfdisk-0:2.40.1-1.fc41.ppc6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 27/156] libmount-0:2.40.1-1.fc41.ppc6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 28/156] libsmartcols-0:2.40.1-1.fc41. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 29/156] libuuid-0:2.40.1-1.fc41.ppc64 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 30/156] util-linux-core-0:2.40.1-1.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 31/156] fedora-repos-0:41-0.2.noarch  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 32/156] glibc-0:2.39.9000-18.fc41.ppc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 33/156] glibc-common-0:2.39.9000-18.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 34/156] xz-libs-1:5.4.6-3.fc41.ppc64l 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 35/156] fedora-gpg-keys-0:41-0.2.noar 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 36/156] fedora-repos-rawhide-0:41-0.2 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 37/156] glibc-gconv-extra-0:2.39.9000 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 38/156] rpm-libs-0:4.19.91-4.fc41.ppc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 39/156] rpm-build-libs-0:4.19.91-4.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 40/156] systemd-libs-0:256~rc3-3.fc41 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 41/156] libselinux-0:3.6-4.fc40.ppc64 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 42/156] libxcrypt-0:4.4.36-5.fc40.ppc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 43/156] ncurses-libs-0:6.4-12.2024012 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 44/156] pam-0:1.6.1-3.fc41.ppc64le    100% |   0.0   B/s |   0.0   B |  00m00s
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[ 45/156] pam-libs-0:1.6.1-3.fc41.ppc64 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 46/156] audit-libs-0:4.0.1-2.fc41.ppc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 47/156] authselect-libs-0:1.5.0-5.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 48/156] authselect-0:1.5.0-5.fc41.ppc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 49/156] libcap-ng-0:0.8.5-1.fc41.ppc6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 50/156] librtas-0:2.0.6-1.fc41.ppc64l 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 51/156] libutempter-0:1.2.1-13.fc40.p 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 52/156] readline-0:8.2-8.fc40.ppc64le 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 53/156] zlib-ng-compat-0:2.1.6-4.fc41 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 54/156] bzip2-libs-0:1.0.8-18.fc40.pp 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 55/156] libacl-0:2.3.2-1.fc40.ppc64le 100% |   0.0   B/s |   0.0   B |  00m00s
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--------------------------------------------------------------------------------
[156/156] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
Running transaction
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>>> Running pre-transaction scriptlet: filesystem-0:3.18-9.fc41.ppc64le
>>> Stop pre-transaction scriptlet: filesystem-0:3.18-9.fc41.ppc64le
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[  3/158] Installing libgcc-0:14.1.1-4. 100% |  49.1 MiB/s | 352.1 KiB |  00m00s
>>> Running post-install scriptlet: libgcc-0:14.1.1-4.fc41.ppc64le
>>> Stop post-install scriptlet: libgcc-0:14.1.1-4.fc41.ppc64le
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>>> Running post-install scriptlet: crypto-policies-0:20240521-1.gitf71d135.fc41
>>> Stop post-install scriptlet: crypto-policies-0:20240521-1.gitf71d135.fc41.no
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>>> Running post-install scriptlet: setup-0:2.15.0-3.fc41.noarch
>>> Stop post-install scriptlet: setup-0:2.15.0-3.fc41.noarch
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>>> Running pre-install scriptlet: glibc-0:2.39.9000-18.fc41.ppc64le
>>> Stop pre-install scriptlet: glibc-0:2.39.9000-18.fc41.ppc64le
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>>> Running post-install scriptlet: glibc-0:2.39.9000-18.fc41.ppc64le
>>> Stop post-install scriptlet: glibc-0:2.39.9000-18.fc41.ppc64le
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>>> Running post-install scriptlet: bash-0:5.2.26-3.fc40.ppc64le
>>> Stop post-install scriptlet: bash-0:5.2.26-3.fc40.ppc64le
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>>> Running post-install scriptlet: glibc-gconv-extra-0:2.39.9000-18.fc41.ppc64l
>>> Stop post-install scriptlet: glibc-gconv-extra-0:2.39.9000-18.fc41.ppc64le
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[ 51/158] Installing systemd-libs-0:256 100% |  87.0 MiB/s |   3.0 MiB |  00m00s
[ 52/158] Installing lua-libs-0:5.4.6-5 100% |  63.9 MiB/s | 458.1 KiB |  00m00s
[ 53/158] Installing libcom_err-0:1.47. 100% |  58.7 MiB/s | 240.2 KiB |  00m00s
[ 54/158] Installing libsepol-0:3.6-3.f 100% |  78.9 MiB/s |   1.1 MiB |  00m00s
[ 55/158] Installing pcre2-0:10.43-2.fc 100% |  79.0 MiB/s | 970.3 KiB |  00m00s
[ 56/158] Installing libselinux-0:3.6-4 100% |  53.8 MiB/s | 330.3 KiB |  00m00s
[ 57/158] Installing sed-0:4.9-1.fc40.p 100% |  49.3 MiB/s |   1.0 MiB |  00m00s
[ 58/158] Installing grep-0:3.11-8.fc41 100% |  46.4 MiB/s |   1.2 MiB |  00m00s
[ 59/158] Installing findutils-1:4.9.0- 100% |  61.8 MiB/s |   1.9 MiB |  00m00s
[ 60/158] Installing xz-1:5.4.6-3.fc41. 100% |  53.1 MiB/s |   2.3 MiB |  00m00s
[ 61/158] Installing libmount-0:2.40.1- 100% |  67.0 MiB/s | 549.0 KiB |  00m00s
[ 62/158] Installing lz4-libs-0:1.9.4-6 100% |  63.7 MiB/s | 326.2 KiB |  00m00s
[ 63/158] Installing jansson-0:2.13.1-9 100% |  54.1 MiB/s | 221.7 KiB |  00m00s
[ 64/158] Installing alternatives-0:1.2 100% |  53.7 MiB/s | 219.9 KiB |  00m00s
[ 65/158] Installing libtasn1-0:4.19.0- 100% |  56.8 MiB/s | 349.2 KiB |  00m00s
[ 66/158] Installing libunistring-0:1.1 100% |  81.4 MiB/s |   1.9 MiB |  00m00s
[ 67/158] Installing libidn2-0:2.3.7-1. 100% |  37.7 MiB/s | 462.8 KiB |  00m00s
[ 68/158] Installing libpsl-0:0.21.5-3. 100% |  48.2 MiB/s | 197.3 KiB |  00m00s
[ 69/158] Installing zstd-0:1.5.6-1.fc4 100% |  86.1 MiB/s |   2.1 MiB |  00m00s
[ 70/158] Installing util-linux-core-0: 100% |  96.9 MiB/s |   6.2 MiB |  00m00s
[ 71/158] Installing tar-2:1.35-3.fc40. 100% |  74.2 MiB/s |   3.2 MiB |  00m00s
[ 72/158] Installing libsemanage-0:3.6- 100% |  53.3 MiB/s | 491.3 KiB |  00m00s
[ 73/158] Installing shadow-utils-2:4.1 100% |  58.1 MiB/s |   7.4 MiB |  00m00s
>>> Running pre-install scriptlet: libutempter-0:1.2.1-13.fc40.ppc64le
>>> Stop pre-install scriptlet: libutempter-0:1.2.1-13.fc40.ppc64le
[ 74/158] Installing libutempter-0:1.2. 100% |  58.5 MiB/s | 419.5 KiB |  00m00s
[ 75/158] Installing zip-0:3.0-40.fc40. 100% |  78.0 MiB/s |   1.2 MiB |  00m00s
[ 76/158] Installing gdbm-1:1.23-6.fc40 100% |  65.1 MiB/s | 933.2 KiB |  00m00s
[ 77/158] Installing cyrus-sasl-lib-0:2 100% |  88.6 MiB/s |   3.5 MiB |  00m00s
[ 78/158] Installing libfdisk-0:2.40.1- 100% |  66.9 MiB/s | 548.1 KiB |  00m00s
[ 79/158] Installing add-determinism-no 100% |  83.0 MiB/s |   2.7 MiB |  00m00s
[ 80/158] Installing build-reproducibil 100% |   1.0 MiB/s |   1.0 KiB |  00m00s
[ 81/158] Installing libxml2-0:2.12.7-1 100% |  83.9 MiB/s |   2.5 MiB |  00m00s
[ 82/158] Installing bzip2-0:1.0.8-18.f 100% |  60.3 MiB/s | 432.0 KiB |  00m00s
[ 83/158] Installing sqlite-libs-0:3.45 100% |  78.0 MiB/s |   1.9 MiB |  00m00s
[ 84/158] Installing ed-0:1.20.2-1.fc41 100% |  46.4 MiB/s | 285.0 KiB |  00m00s
[ 85/158] Installing patch-0:2.7.6-24.f 100% |  54.7 MiB/s | 392.1 KiB |  00m00s
[ 86/158] Installing elfutils-default-y 100% | 227.0 KiB/s |   2.0 KiB |  00m00s
>>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-7.fc41.n
>>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-7.fc41.noar
[ 87/158] Installing cpio-0:2.15-1.fc40 100% |  58.1 MiB/s |   1.2 MiB |  00m00s
[ 88/158] Installing diffutils-0:3.10-5 100% |  72.4 MiB/s |   2.2 MiB |  00m00s
[ 89/158] Installing librtas-0:2.0.6-1. 100% |  25.7 MiB/s | 499.7 KiB |  00m00s
>>> Running post-install scriptlet: librtas-0:2.0.6-1.fc41.ppc64le
>>> Stop post-install scriptlet: librtas-0:2.0.6-1.fc41.ppc64le
[ 90/158] Installing libgomp-0:14.1.1-4 100% |  68.0 MiB/s | 696.8 KiB |  00m00s
[ 91/158] Installing libpkgconf-0:2.1.1 100% |  48.6 MiB/s | 199.1 KiB |  00m00s
[ 92/158] Installing pkgconf-0:2.1.1-1. 100% |  47.1 MiB/s | 241.2 KiB |  00m00s
[ 93/158] Installing keyutils-libs-0:1. 100% |  55.5 MiB/s | 227.5 KiB |  00m00s
[ 94/158] Installing libverto-0:0.3.2-8 100% |  48.6 MiB/s | 199.0 KiB |  00m00s
[ 95/158] Installing libffi-0:3.4.6-1.f 100% |  53.6 MiB/s | 219.4 KiB |  00m00s
[ 96/158] Installing p11-kit-0:0.25.3-4 100% |  65.5 MiB/s |   3.1 MiB |  00m00s
[ 97/158] Installing p11-kit-trust-0:0. 100% |  33.8 MiB/s | 657.1 KiB |  00m00s
>>> Running post-install scriptlet: p11-kit-trust-0:0.25.3-4.fc40.ppc64le
>>> Stop post-install scriptlet: p11-kit-trust-0:0.25.3-4.fc40.ppc64le
[ 98/158] Installing libnghttp2-0:1.62. 100% |  51.4 MiB/s | 263.2 KiB |  00m00s
[ 99/158] Installing xxhash-libs-0:0.8. 100% |  52.1 MiB/s | 213.3 KiB |  00m00s
[100/158] Installing libbrotli-0:1.1.0- 100% |  79.1 MiB/s |   1.3 MiB |  00m00s
[101/158] Installing libtool-ltdl-0:2.4 100% |  54.5 MiB/s | 223.2 KiB |  00m00s
[102/158] Installing rust-srpm-macros-0 100% |   2.7 MiB/s |   5.6 KiB |  00m00s
[103/158] Installing qt5-srpm-macros-0: 100% | 750.0 KiB/s | 768.0   B |  00m00s
[104/158] Installing perl-srpm-macros-0 100% |   1.1 MiB/s |   1.1 KiB |  00m00s
[105/158] Installing package-notes-srpm 100% |   2.0 MiB/s |   2.0 KiB |  00m00s
[106/158] Installing openblas-srpm-macr 100% | 382.8 KiB/s | 392.0   B |  00m00s
[107/158] Installing ocaml-srpm-macros- 100% |   2.1 MiB/s |   2.2 KiB |  00m00s
[108/158] Installing kernel-srpm-macros 100% |   2.3 MiB/s |   2.3 KiB |  00m00s
[109/158] Installing gnat-srpm-macros-0 100% |   1.2 MiB/s |   1.3 KiB |  00m00s
[110/158] Installing ghc-srpm-macros-0: 100% |   1.0 MiB/s |   1.0 KiB |  00m00s
[111/158] Installing fpc-srpm-macros-0: 100% | 410.2 KiB/s | 420.0   B |  00m00s
[112/158] Installing ansible-srpm-macro 100% |  17.7 MiB/s |  36.2 KiB |  00m00s
[113/158] Installing qt6-srpm-macros-0: 100% | 714.8 KiB/s | 732.0   B |  00m00s
[114/158] Installing pkgconf-m4-0:2.1.1 100% |  14.0 MiB/s |  14.3 KiB |  00m00s
[115/158] Installing pkgconf-pkg-config 100% | 591.1 KiB/s |   1.8 KiB |  00m00s
[116/158] Installing coreutils-common-0 100% |  82.3 MiB/s |  11.2 MiB |  00m00s
[117/158] Installing openssl-libs-1:3.2 100% |  92.3 MiB/s |   8.6 MiB |  00m00s
[118/158] Installing coreutils-0:9.5-1. 100% | 118.3 MiB/s |  22.4 MiB |  00m00s
>>> Running pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.n
>>> Stop pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noar
[119/158] Installing ca-certificates-0: 100% |   1.1 MiB/s |   2.3 MiB |  00m02s
>>> Running post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.
>>> Stop post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noa
[120/158] Installing krb5-libs-0:1.21.2 100% |  85.4 MiB/s |   3.8 MiB |  00m00s
[121/158] Installing libarchive-0:3.7.4 100% |  78.2 MiB/s |   1.3 MiB |  00m00s
[122/158] Installing libtirpc-0:1.3.4-1 100% |  55.4 MiB/s | 340.6 KiB |  00m00s
[123/158] Installing gzip-0:1.13-1.fc40 100% |  45.4 MiB/s | 558.4 KiB |  00m00s
[124/158] Installing authselect-libs-0: 100% |  38.5 MiB/s | 946.7 KiB |  00m00s
[125/158] Installing authselect-0:1.5.0 100% |  30.6 MiB/s | 313.8 KiB |  00m00s
[126/158] Installing cracklib-0:2.9.11- 100% |  42.0 MiB/s | 945.6 KiB |  00m00s
[127/158] Installing libpwquality-0:1.4 100% |  44.3 MiB/s |   1.1 MiB |  00m00s
[128/158] Installing libnsl2-0:2.0.1-1. 100% |  43.5 MiB/s | 222.9 KiB |  00m00s
[129/158] Installing pam-0:1.6.1-3.fc41 100% |  95.8 MiB/s |  11.0 MiB |  00m00s
[130/158] Installing libssh-0:0.10.6-6. 100% |  69.5 MiB/s | 711.5 KiB |  00m00s
[131/158] Installing rpm-sequoia-0:1.6. 100% |  92.2 MiB/s |   2.7 MiB |  00m00s
[132/158] Installing rpm-libs-0:4.19.91 100% |  72.9 MiB/s |   1.1 MiB |  00m00s
[133/158] Installing libevent-0:2.1.12- 100% |  93.2 MiB/s |   1.6 MiB |  00m00s
[134/158] Installing openldap-0:2.6.8-1 100% |  66.2 MiB/s |   1.1 MiB |  00m00s
[135/158] Installing libcurl-0:8.8.0-1. 100% |  78.9 MiB/s |   1.0 MiB |  00m00s
[136/158] Installing elfutils-libs-0:0. 100% |  74.5 MiB/s |   1.0 MiB |  00m00s
[137/158] Installing elfutils-debuginfo 100% |  55.6 MiB/s | 398.5 KiB |  00m00s
[138/158] Installing binutils-gold-0:2. 100% |  76.9 MiB/s |   3.8 MiB |  00m00s
>>> Running post-install scriptlet: binutils-gold-0:2.42.50-11.fc41.ppc64le
>>> Stop post-install scriptlet: binutils-gold-0:2.42.50-11.fc41.ppc64le
[139/158] Installing binutils-0:2.42.50 100% |  99.4 MiB/s |  32.8 MiB |  00m00s
>>> Running post-install scriptlet: binutils-0:2.42.50-11.fc41.ppc64le
>>> Stop post-install scriptlet: binutils-0:2.42.50-11.fc41.ppc64le
[140/158] Installing elfutils-0:0.191-7 100% |  99.4 MiB/s |   5.3 MiB |  00m00s
[141/158] Installing gdb-minimal-0:14.2 100% |  89.3 MiB/s |  13.8 MiB |  00m00s
[142/158] Installing debugedit-0:5.0-16 100% |  61.3 MiB/s | 501.8 KiB |  00m00s
[143/158] Installing rpm-build-libs-0:4 100% |  63.9 MiB/s | 327.3 KiB |  00m00s
[144/158] Installing curl-0:8.8.0-1.fc4 100% |  30.5 MiB/s | 874.2 KiB |  00m00s
>>> Running pre-install scriptlet: rpm-0:4.19.91-4.fc41.ppc64le
>>> Stop pre-install scriptlet: rpm-0:4.19.91-4.fc41.ppc64le
[145/158] Installing rpm-0:4.19.91-4.fc 100% |  45.2 MiB/s |   3.3 MiB |  00m00s
[146/158] Installing efi-srpm-macros-0: 100% |  10.0 MiB/s |  41.2 KiB |  00m00s
[147/158] Installing lua-srpm-macros-0: 100% | 951.2 KiB/s |   1.9 KiB |  00m00s
[148/158] Installing zig-srpm-macros-0: 100% | 832.0 KiB/s |   1.7 KiB |  00m00s
[149/158] Installing forge-srpm-macros- 100% |  13.1 MiB/s |  40.3 KiB |  00m00s
[150/158] Installing fonts-srpm-macros- 100% |  18.4 MiB/s |  56.5 KiB |  00m00s
[151/158] Installing go-srpm-macros-0:3 100% |  20.2 MiB/s |  62.0 KiB |  00m00s
[152/158] Installing python-srpm-macros 100% |  12.6 MiB/s |  51.7 KiB |  00m00s
[153/158] Installing redhat-rpm-config- 100% |  18.6 MiB/s | 190.0 KiB |  00m00s
[154/158] Installing rpm-build-0:4.19.9 100% |  73.5 MiB/s |   1.4 MiB |  00m00s
[155/158] Installing pyproject-srpm-mac 100% | 414.8 KiB/s |   2.1 KiB |  00m00s
[156/158] Installing util-linux-0:2.40. 100% |  85.8 MiB/s |  17.8 MiB |  00m00s
>>> Running post-install scriptlet: util-linux-0:2.40.1-1.fc41.ppc64le
>>> Stop post-install scriptlet: util-linux-0:2.40.1-1.fc41.ppc64le
[157/158] Installing which-0:2.21-41.fc 100% |  40.7 MiB/s | 250.2 KiB |  00m00s
[158/158] Installing info-0:7.1-2.fc40. 100% | 223.6 KiB/s | 677.9 KiB |  00m03s
>>> Running post-transaction scriptlet: filesystem-0:3.18-9.fc41.ppc64le
>>> Stop post-transaction scriptlet: filesystem-0:3.18-9.fc41.ppc64le
>>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.f
>>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40
>>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc41.ppc64le
>>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc41.ppc64le
>>> Running post-transaction scriptlet: rpm-0:4.19.91-4.fc41.ppc64le
>>> Stop post-transaction scriptlet: rpm-0:4.19.91-4.fc41.ppc64le
>>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-18.fc41.ppc64le
>>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-18.fc41.ppc64le
>>> Running trigger-install scriptlet: info-0:7.1-2.fc40.ppc64le
>>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.ppc64le
Warning: skipped PGP checks for 156 package(s).
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-nopython-0.2.0-9.fc41.ppc64le
alternatives-1.27-1.fc41.ppc64le
ansible-srpm-macros-1-15.fc41.noarch
audit-libs-4.0.1-2.fc41.ppc64le
authselect-1.5.0-5.fc41.ppc64le
authselect-libs-1.5.0-5.fc41.ppc64le
basesystem-11-20.fc40.noarch
bash-5.2.26-3.fc40.ppc64le
binutils-2.42.50-11.fc41.ppc64le
binutils-gold-2.42.50-11.fc41.ppc64le
build-reproducibility-srpm-macros-0.2.0-9.fc41.noarch
bzip2-1.0.8-18.fc40.ppc64le
bzip2-libs-1.0.8-18.fc40.ppc64le
ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch
coreutils-9.5-1.fc41.ppc64le
coreutils-common-9.5-1.fc41.ppc64le
cpio-2.15-1.fc40.ppc64le
cracklib-2.9.11-5.fc40.ppc64le
crypto-policies-20240521-1.gitf71d135.fc41.noarch
curl-8.8.0-1.fc41.ppc64le
cyrus-sasl-lib-2.1.28-22.fc41.ppc64le
debugedit-5.0-16.fc41.ppc64le
diffutils-3.10-5.fc40.ppc64le
dwz-0.15-6.fc40.ppc64le
ed-1.20.2-1.fc41.ppc64le
efi-srpm-macros-5-11.fc40.noarch
elfutils-0.191-7.fc41.ppc64le
elfutils-debuginfod-client-0.191-7.fc41.ppc64le
elfutils-default-yama-scope-0.191-7.fc41.noarch
elfutils-libelf-0.191-7.fc41.ppc64le
elfutils-libs-0.191-7.fc41.ppc64le
fedora-gpg-keys-41-0.2.noarch
fedora-release-41-0.13.noarch
fedora-release-common-41-0.13.noarch
fedora-release-identity-basic-41-0.13.noarch
fedora-repos-41-0.2.noarch
fedora-repos-rawhide-41-0.2.noarch
file-5.45-5.fc41.ppc64le
file-libs-5.45-5.fc41.ppc64le
filesystem-3.18-9.fc41.ppc64le
findutils-4.9.0-8.fc40.ppc64le
fonts-srpm-macros-2.0.5-14.fc40.noarch
forge-srpm-macros-0.3.1-1.fc41.noarch
fpc-srpm-macros-1.3-12.fc40.noarch
gawk-5.3.0-3.fc40.ppc64le
gdb-minimal-14.2-9.fc41.ppc64le
gdbm-1.23-6.fc40.ppc64le
gdbm-libs-1.23-6.fc40.ppc64le
ghc-srpm-macros-1.9.1-1.fc41.noarch
glibc-2.39.9000-18.fc41.ppc64le
glibc-common-2.39.9000-18.fc41.ppc64le
glibc-gconv-extra-2.39.9000-18.fc41.ppc64le
glibc-minimal-langpack-2.39.9000-18.fc41.ppc64le
gmp-6.3.0-1.fc41.ppc64le
gnat-srpm-macros-6-5.fc40.noarch
go-srpm-macros-3.6.0-1.fc41.noarch
grep-3.11-8.fc41.ppc64le
gzip-1.13-1.fc40.ppc64le
info-7.1-2.fc40.ppc64le
jansson-2.13.1-9.fc40.ppc64le
kernel-srpm-macros-1.0-23.fc41.noarch
keyutils-libs-1.6.3-3.fc40.ppc64le
krb5-libs-1.21.2-5.fc40.ppc64le
libacl-2.3.2-1.fc40.ppc64le
libarchive-3.7.4-1.fc41.ppc64le
libattr-2.5.2-3.fc40.ppc64le
libblkid-2.40.1-1.fc41.ppc64le
libbrotli-1.1.0-3.fc40.ppc64le
libcap-2.70-1.fc41.ppc64le
libcap-ng-0.8.5-1.fc41.ppc64le
libcom_err-1.47.0-5.fc40.ppc64le
libcurl-8.8.0-1.fc41.ppc64le
libeconf-0.6.2-2.fc41.ppc64le
libevent-2.1.12-13.fc41.ppc64le
libfdisk-2.40.1-1.fc41.ppc64le
libffi-3.4.6-1.fc41.ppc64le
libgcc-14.1.1-4.fc41.ppc64le
libgomp-14.1.1-4.fc41.ppc64le
libidn2-2.3.7-1.fc40.ppc64le
libmount-2.40.1-1.fc41.ppc64le
libnghttp2-1.62.0-1.fc41.ppc64le
libnsl2-2.0.1-1.fc40.ppc64le
libpkgconf-2.1.1-1.fc41.ppc64le
libpsl-0.21.5-3.fc40.ppc64le
libpwquality-1.4.5-9.fc40.ppc64le
librtas-2.0.6-1.fc41.ppc64le
libselinux-3.6-4.fc40.ppc64le
libsemanage-3.6-3.fc40.ppc64le
libsepol-3.6-3.fc40.ppc64le
libsmartcols-2.40.1-1.fc41.ppc64le
libssh-0.10.6-6.fc41.ppc64le
libssh-config-0.10.6-6.fc41.noarch
libstdc++-14.1.1-4.fc41.ppc64le
libtasn1-4.19.0-6.fc40.ppc64le
libtirpc-1.3.4-1.rc3.fc41.ppc64le
libtool-ltdl-2.4.7-10.fc40.ppc64le
libunistring-1.1-7.fc41.ppc64le
libutempter-1.2.1-13.fc40.ppc64le
libuuid-2.40.1-1.fc41.ppc64le
libverto-0.3.2-8.fc40.ppc64le
libxcrypt-4.4.36-5.fc40.ppc64le
libxml2-2.12.7-1.fc41.ppc64le
libzstd-1.5.6-1.fc41.ppc64le
lua-libs-5.4.6-5.fc40.ppc64le
lua-srpm-macros-1-13.fc40.noarch
lz4-libs-1.9.4-6.fc40.ppc64le
mpfr-4.2.1-4.fc41.ppc64le
ncurses-base-6.4-12.20240127.fc40.noarch
ncurses-libs-6.4-12.20240127.fc40.ppc64le
ocaml-srpm-macros-10-1.fc41.noarch
openblas-srpm-macros-2-17.fc41.noarch
openldap-2.6.8-1.fc41.ppc64le
openssl-libs-3.2.1-6.fc41.ppc64le
p11-kit-0.25.3-4.fc40.ppc64le
p11-kit-trust-0.25.3-4.fc40.ppc64le
package-notes-srpm-macros-0.5-11.fc40.noarch
pam-1.6.1-3.fc41.ppc64le
pam-libs-1.6.1-3.fc41.ppc64le
patch-2.7.6-24.fc40.ppc64le
pcre2-10.43-2.fc41.1.ppc64le
pcre2-syntax-10.43-2.fc41.1.noarch
perl-srpm-macros-1-53.fc40.noarch
pkgconf-2.1.1-1.fc41.ppc64le
pkgconf-m4-2.1.1-1.fc41.noarch
pkgconf-pkg-config-2.1.1-1.fc41.ppc64le
popt-1.19-6.fc40.ppc64le
publicsuffix-list-dafsa-20240107-3.fc40.noarch
pyproject-srpm-macros-1.12.0-1.fc40.noarch
python-srpm-macros-3.12-9.fc41.noarch
qt5-srpm-macros-5.15.13-1.fc41.noarch
qt6-srpm-macros-6.7.1-1.fc41.noarch
readline-8.2-8.fc40.ppc64le
redhat-rpm-config-291-1.fc41.noarch
rpm-4.19.91-4.fc41.ppc64le
rpm-build-4.19.91-4.fc41.ppc64le
rpm-build-libs-4.19.91-4.fc41.ppc64le
rpm-libs-4.19.91-4.fc41.ppc64le
rpm-sequoia-1.6.0-3.fc41.ppc64le
rust-srpm-macros-26.3-1.fc41.noarch
sed-4.9-1.fc40.ppc64le
setup-2.15.0-3.fc41.noarch
shadow-utils-4.15.1-5.fc41.ppc64le
sqlite-libs-3.45.3-1.fc41.ppc64le
systemd-libs-256~rc3-3.fc41.ppc64le
tar-1.35-3.fc40.ppc64le
unzip-6.0-63.fc40.ppc64le
util-linux-2.40.1-1.fc41.ppc64le
util-linux-core-2.40.1-1.fc41.ppc64le
which-2.21-41.fc40.ppc64le
xxhash-libs-0.8.2-2.fc40.ppc64le
xz-5.4.6-3.fc41.ppc64le
xz-libs-5.4.6-3.fc41.ppc64le
zig-srpm-macros-1-2.fc40.noarch
zip-3.0-40.fc40.ppc64le
zlib-ng-compat-2.1.6-4.fc41.ppc64le
zstd-1.5.6-1.fc41.ppc64le
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1706140800
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-19.fc41.src.rpm
Finish: rpmbuild -bs
cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-40-ppc64le-1717079273.067125/root/var/log’: No such file or directory
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-40-ppc64le-1717079273.067125/root/var/log/dnf5.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-8fe6egxs/mmseq/mmseq.spec) Config(child) 1 minutes 4 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-19.fc41.src.rpm)  Config(fedora-40-ppc64le)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-40-ppc64le-bootstrap-1717079273.067125/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-40-ppc64le-bootstrap-1717079273.067125/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-40-ppc64le-1717079273.067125/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1.1-1.fc40.ppc64le
  rpm-sequoia-1.6.0-3.fc40.ppc64le
  python3-dnf-4.20.0-1.fc41.noarch
  dnf5-5.2.2.0-1.fc41.ppc64le
  dnf5-plugins-5.2.2.0-1.fc41.ppc64le
Finish: chroot init
Start: build phase for mmseq-1.0.11-19.fc41.src.rpm
Start: build setup for mmseq-1.0.11-19.fc41.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1706140800
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-19.fc41.src.rpm
Updating and loading repositories:
 Copr repository                        100% |  30.7 KiB/s |   1.5 KiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% |  62.5 KiB/s |   4.1 KiB |  00m00s
 updates                                100% | 135.2 KiB/s |   4.9 KiB |  00m00s
 fedora                                 100% | 105.8 KiB/s |   3.8 KiB |  00m00s
Repositories loaded.
Package                      Arch    Version              Repository                                                         Size
Installing:
 armadillo-devel             ppc64le 12.8.1-1.fc41        copr_base                                                       7.3 MiB
 boost-devel                 ppc64le 1.83.0-5.fc41        copr_base                                                     143.0 MiB
 flexiblas-devel             ppc64le 3.4.4-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.0 MiB
 gcc-c++                     ppc64le 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  36.1 MiB
 gsl-devel                   ppc64le 2.7.1-8.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 htslib-devel                ppc64le 1.15.1-5.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 411.1 KiB
 make                        ppc64le 1:4.4.1-6.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 perl-generators             noarch  1.16-5.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  21.8 KiB
 zlib-ng-compat-devel        ppc64le 2.1.6-4.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.4 KiB
Installing dependencies:
 SuperLU                     ppc64le 6.0.1-5.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 650.3 KiB
 SuperLU-devel               ppc64le 6.0.1-5.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 102.2 KiB
 add-determinism             ppc64le 0.2.0-9.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.7 MiB
 annobin-docs                noarch  12.54-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  96.2 KiB
 annobin-plugin-gcc          ppc64le 12.54-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 armadillo                   ppc64le 12.8.1-1.fc41        copr_base                                                     210.5 KiB
 arpack                      ppc64le 3.9.1-3.fc40         copr_base                                                     809.9 KiB
 arpack-devel                ppc64le 3.9.1-3.fc40         copr_base                                                      69.1 KiB
 autoconf                    noarch  2.72-2.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.8 MiB
 automake                    noarch  1.16.5-16.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 boost                       ppc64le 1.83.0-5.fc41        copr_base                                                       1.3 KiB
 boost-atomic                ppc64le 1.83.0-5.fc41        copr_base                                                     196.7 KiB
 boost-chrono                ppc64le 1.83.0-5.fc41        copr_base                                                     197.3 KiB
 boost-container             ppc64le 1.83.0-5.fc41        copr_base                                                     197.3 KiB
 boost-context               ppc64le 1.83.0-5.fc41        copr_base                                                     196.2 KiB
 boost-contract              ppc64le 1.83.0-5.fc41        copr_base                                                     262.5 KiB
 boost-coroutine             ppc64le 1.83.0-5.fc41        copr_base                                                     197.0 KiB
 boost-date-time             ppc64le 1.83.0-5.fc41        copr_base                                                     196.0 KiB
 boost-fiber                 ppc64le 1.83.0-5.fc41        copr_base                                                     198.2 KiB
 boost-filesystem            ppc64le 1.83.0-5.fc41        copr_base                                                     262.8 KiB
 boost-graph                 ppc64le 1.83.0-5.fc41        copr_base                                                     525.2 KiB
 boost-iostreams             ppc64le 1.83.0-5.fc41        copr_base                                                     198.1 KiB
 boost-json                  ppc64le 1.83.0-5.fc41        copr_base                                                     456.0 KiB
 boost-locale                ppc64le 1.83.0-5.fc41        copr_base                                                     852.4 KiB
 boost-log                   ppc64le 1.83.0-5.fc41        copr_base                                                       1.9 MiB
 boost-math                  ppc64le 1.83.0-5.fc41        copr_base                                                       1.8 MiB
 boost-nowide                ppc64le 1.83.0-5.fc41        copr_base                                                     196.8 KiB
 boost-numpy3                ppc64le 1.83.0-5.fc41        copr_base                                                     197.3 KiB
 boost-program-options       ppc64le 1.83.0-5.fc41        copr_base                                                     331.1 KiB
 boost-python3               ppc64le 1.83.0-5.fc41        copr_base                                                     397.5 KiB
 boost-random                ppc64le 1.83.0-5.fc41        copr_base                                                     197.5 KiB
 boost-regex                 ppc64le 1.83.0-5.fc41        copr_base                                                     394.2 KiB
 boost-serialization         ppc64le 1.83.0-5.fc41        copr_base                                                     723.3 KiB
 boost-stacktrace            ppc64le 1.83.0-5.fc41        copr_base                                                     587.4 KiB
 boost-system                ppc64le 1.83.0-5.fc41        copr_base                                                     196.0 KiB
 boost-test                  ppc64le 1.83.0-5.fc41        copr_base                                                     920.5 KiB
 boost-thread                ppc64le 1.83.0-5.fc41        copr_base                                                     264.2 KiB
 boost-timer                 ppc64le 1.83.0-5.fc41        copr_base                                                     197.9 KiB
 boost-type_erasure          ppc64le 1.83.0-5.fc41        copr_base                                                     198.0 KiB
 boost-wave                  ppc64le 1.83.0-5.fc41        copr_base                                                     854.1 KiB
 cmake-filesystem            ppc64le 3.28.3-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 cpp                         ppc64le 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  32.4 MiB
 emacs-filesystem            noarch  1:30.0-2.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 expat                       ppc64le 2.6.2-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 600.6 KiB
 flexiblas                   ppc64le 3.4.4-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  48.5 KiB
 flexiblas-netlib            ppc64le 3.4.4-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.6 MiB
 flexiblas-netlib64          ppc64le 3.4.4-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.4 MiB
 flexiblas-openblas-openmp   ppc64le 3.4.4-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 195.0 KiB
 flexiblas-openblas-openmp64 ppc64le 3.4.4-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 195.0 KiB
 gc                          ppc64le 8.2.2-6.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 914.0 KiB
 gcc                         ppc64le 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  92.9 MiB
 gcc-gfortran                ppc64le 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  34.9 MiB
 gcc-plugin-annobin          ppc64le 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 196.9 KiB
 glibc-devel                 ppc64le 2.39.9000-18.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.6 MiB
 groff-base                  ppc64le 1.23.0-6.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.4 MiB
 gsl                         ppc64le 2.7.1-8.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.7 MiB
 guile30                     ppc64le 3.0.9-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  53.3 MiB
 hdf5                        ppc64le 1.12.1-15.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.6 MiB
 hdf5-devel                  ppc64le 1.12.1-15.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.8 MiB
 htslib                      ppc64le 1.15.1-5.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.0 MiB
 kernel-headers              ppc64le 6.10.0-0.rc1.17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.3 MiB
 libaec                      ppc64le 1.1.2-1.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 409.5 KiB
 libaec-devel                ppc64le 1.1.2-1.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.9 KiB
 libasan                     ppc64le 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.0 MiB
 libatomic                   ppc64le 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 196.2 KiB
 libb2                       ppc64le 0.98.1-11.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 202.1 KiB
 libgfortran                 ppc64le 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.5 MiB
 libicu                      ppc64le 74.2-1.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  36.8 MiB
 libicu-devel                ppc64le 74.2-1.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.7 MiB
 libmpc                      ppc64le 1.3.1-5.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 345.6 KiB
 libquadmath                 ppc64le 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 490.5 KiB
 libquadmath-devel           ppc64le 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  21.8 KiB
 libstdc++-devel             ppc64le 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.3 MiB
 libubsan                    ppc64le 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 668.6 KiB
 libxcrypt-devel             ppc64le 4.4.36-5.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  30.3 KiB
 m4                          ppc64le 1.4.19-9.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 732.6 KiB
 metis                       ppc64le 5.1.0.3-5.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 MiB
 mpdecimal                   ppc64le 2.5.1-9.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 328.9 KiB
 ncurses                     ppc64le 6.4-12.20240127.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 openblas                    ppc64le 0.3.26-4.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  96.0 KiB
 openblas-openmp             ppc64le 0.3.26-4.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  23.6 MiB
 openblas-openmp64           ppc64le 0.3.26-4.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  23.4 MiB
 perl-AutoLoader             noarch  5.74-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  20.5 KiB
 perl-B                      ppc64le 1.88-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 604.3 KiB
 perl-Carp                   noarch  1.54-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  46.5 KiB
 perl-Class-Struct           noarch  0.68-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  25.4 KiB
 perl-Data-Dumper            ppc64le 2.188-503.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 263.4 KiB
 perl-Digest                 noarch  1.20-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.2 KiB
 perl-Digest-MD5             ppc64le 2.59-3.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 231.4 KiB
 perl-DynaLoader             ppc64le 1.54-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  32.1 KiB
 perl-Encode                 ppc64le 4:3.21-505.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.9 MiB
 perl-Errno                  ppc64le 1.37-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.4 KiB
 perl-Exporter               noarch  5.78-3.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  54.2 KiB
 perl-Fcntl                  ppc64le 1.15-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 200.3 KiB
 perl-Fedora-VSP             noarch  0.001-34.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.6 KiB
 perl-File-Basename          noarch  2.86-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  14.0 KiB
 perl-File-Compare           noarch  1.100.700-507.fc41   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.5 KiB
 perl-File-Copy              noarch  2.41-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.6 KiB
 perl-File-Find              noarch  1.43-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  41.9 KiB
 perl-File-Path              noarch  2.18-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  63.5 KiB
 perl-File-Temp              noarch  1:0.231.100-503.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 162.3 KiB
 perl-File-stat              noarch  1.13-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.7 KiB
 perl-FileHandle             noarch  2.05-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.3 KiB
 perl-Getopt-Long            noarch  1:2.57-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.1 KiB
 perl-Getopt-Std             noarch  1.13-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.1 KiB
 perl-HTTP-Tiny              noarch  0.088-5.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 152.1 KiB
 perl-IO                     ppc64le 1.52-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 318.7 KiB
 perl-IO-Socket-IP           noarch  0.42-2.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  98.6 KiB
 perl-IO-Socket-SSL          noarch  2.085-1.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 685.0 KiB
 perl-IPC-Open3              noarch  1.22-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.5 KiB
 perl-MIME-Base64            ppc64le 3.16-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 221.7 KiB
 perl-Mozilla-CA             noarch  20240313-1.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.5 KiB
 perl-Net-SSLeay             ppc64le 1.94-3.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 perl-POSIX                  ppc64le 2.13-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 389.9 KiB
 perl-PathTools              ppc64le 3.89-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 351.5 KiB
 perl-Pod-Escapes            noarch  1:1.07-503.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  24.9 KiB
 perl-Pod-Perldoc            noarch  3.28.01-503.fc40     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 163.1 KiB
 perl-Pod-Simple             noarch  1:3.45-6.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 559.8 KiB
 perl-Pod-Usage              noarch  4:2.03-504.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  84.7 KiB
 perl-Scalar-List-Utils      ppc64le 5:1.63-503.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.2 KiB
 perl-SelectSaver            noarch  1.02-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 perl-Socket                 ppc64le 4:2.038-1.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 271.7 KiB
 perl-Storable               ppc64le 1:3.32-502.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 372.3 KiB
 perl-Symbol                 noarch  1.09-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.8 KiB
 perl-Term-ANSIColor         noarch  5.01-504.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  97.5 KiB
 perl-Term-Cap               noarch  1.18-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.3 KiB
 perl-Text-ParseWords        noarch  3.31-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.5 KiB
 perl-Text-Tabs+Wrap         noarch  2024.001-1.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.5 KiB
 perl-Thread-Queue           noarch  3.14-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.8 KiB
 perl-Time-Local             noarch  2:1.350-5.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  68.9 KiB
 perl-URI                    noarch  5.28-1.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 240.2 KiB
 perl-base                   noarch  2.27-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.5 KiB
 perl-constant               noarch  1.33-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  26.2 KiB
 perl-if                     noarch  0.61.000-507.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.8 KiB
 perl-interpreter            ppc64le 4:5.38.2-507.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 299.7 KiB
 perl-libnet                 noarch  3.15-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 289.0 KiB
 perl-libs                   ppc64le 4:5.38.2-507.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.6 MiB
 perl-locale                 noarch  1.10-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.2 KiB
 perl-macros                 noarch  4:5.38.2-507.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.5 KiB
 perl-mro                    ppc64le 1.28-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.3 KiB
 perl-overload               noarch  1.37-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  71.5 KiB
 perl-overloading            noarch  0.02-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.8 KiB
 perl-parent                 noarch  1:0.241-502.fc40     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.7 KiB
 perl-podlators              noarch  1:5.01-502.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 308.1 KiB
 perl-threads                ppc64le 1:2.36-503.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 263.0 KiB
 perl-threads-shared         ppc64le 1.68-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 231.5 KiB
 perl-vars                   noarch  1.05-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.9 KiB
 python-pip-wheel            noarch  24.0-2.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 python3                     ppc64le 3.12.3-2.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 211.4 KiB
 python3-libs                ppc64le 3.12.3-2.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  51.5 MiB
 python3-numpy               ppc64le 1:1.26.4-4.fc41      copr_base                                                      44.2 MiB
 tzdata                      noarch  2024a-8.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB

Transaction Summary:
 Installing:      161 packages

Total size of inbound packages is 163 MiB. Need to download 36 MiB.
After this operation 741 MiB will be used (install 741 MiB, remove 0 B).
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[137/161] armadillo-devel-0:12.8.1-1.fc 100% |  16.9 MiB/s |   2.0 MiB |  00m00s
[138/161] flexiblas-devel-0:3.4.4-1.fc4 100% | 884.9 KiB/s | 112.4 KiB |  00m00s
[139/161] perl-generators-0:1.16-5.fc40 100% | 284.3 KiB/s |  16.5 KiB |  00m00s
[140/161] gsl-devel-0:2.7.1-8.fc41.ppc6 100% |   3.1 MiB/s | 609.3 KiB |  00m00s
[141/161] htslib-devel-0:1.15.1-5.fc40. 100% |   1.2 MiB/s |  98.9 KiB |  00m00s
[142/161] flexiblas-openblas-openmp64-0 100% | 323.2 KiB/s |  16.8 KiB |  00m00s
[143/161] gsl-0:2.7.1-8.fc41.ppc64le    100% |  12.1 MiB/s |   1.2 MiB |  00m00s
[144/161] perl-macros-4:5.38.2-507.fc41 100% | 655.7 KiB/s |  12.5 KiB |  00m00s
[145/161] htslib-0:1.15.1-5.fc40.ppc64l 100% |  21.9 MiB/s | 560.3 KiB |  00m00s
[146/161] openblas-openmp64-0:0.3.26-4. 100% |  74.6 MiB/s |   4.7 MiB |  00m00s
[147/161] perl-Fedora-VSP-0:0.001-34.fc 100% | 146.3 KiB/s |  23.1 KiB |  00m00s
[148/161] SuperLU-devel-0:6.0.1-5.fc41. 100% | 244.0 KiB/s |  27.1 KiB |  00m00s
[149/161] python3-numpy-1:1.26.4-4.fc41 100% |  35.6 MiB/s |   6.8 MiB |  00m00s
[150/161] armadillo-0:12.8.1-1.fc41.ppc 100% |   1.5 MiB/s |  36.9 KiB |  00m00s
[151/161] arpack-devel-0:3.9.1-3.fc40.p 100% |   1.1 MiB/s |  22.3 KiB |  00m00s
[152/161] hdf5-devel-0:1.12.1-15.fc40.p 100% |  36.5 MiB/s |   1.3 MiB |  00m00s
[153/161] flexiblas-netlib64-0:3.4.4-1. 100% |   5.7 MiB/s |   2.9 MiB |  00m01s
[154/161] libquadmath-devel-0:14.1.1-4. 100% |   1.8 MiB/s |  39.9 KiB |  00m00s
[155/161] SuperLU-0:6.0.1-5.fc41.ppc64l 100% | 951.6 KiB/s | 205.5 KiB |  00m00s
[156/161] arpack-0:3.9.1-3.fc40.ppc64le 100% |   4.9 MiB/s | 187.0 KiB |  00m00s
[157/161] libaec-devel-0:1.1.2-1.fc40.p 100% | 420.4 KiB/s |  11.8 KiB |  00m00s
[158/161] libaec-0:1.1.2-1.fc40.ppc64le 100% |   2.0 MiB/s |  39.9 KiB |  00m00s
[159/161] metis-0:5.1.0.3-5.fc40.ppc64l 100% |  18.8 MiB/s | 598.3 KiB |  00m00s
[160/161] hdf5-0:1.12.1-15.fc40.ppc64le 100% |   3.3 MiB/s |   2.3 MiB |  00m01s
[161/161] gcc-gfortran-0:14.1.1-4.fc41. 100% |  14.8 MiB/s |  12.0 MiB |  00m01s
--------------------------------------------------------------------------------
[161/161] Total                         100% |  23.8 MiB/s |  35.7 MiB |  00m02s
Running transaction
[  1/163] Verify package files          100% |  76.0   B/s | 161.0   B |  00m02s
[  2/163] Prepare transaction           100% | 408.0   B/s | 161.0   B |  00m00s
[  3/163] Installing boost-system-0:1.8 100% |  96.2 MiB/s | 197.0 KiB |  00m00s
[  4/163] Installing libgfortran-0:14.1 100% | 153.9 MiB/s |   2.5 MiB |  00m00s
[  5/163] Installing boost-chrono-0:1.8 100% |  96.8 MiB/s | 198.3 KiB |  00m00s
[  6/163] Installing boost-thread-0:1.8 100% |  86.3 MiB/s | 265.2 KiB |  00m00s
[  7/163] Installing libicu-0:74.2-1.fc 100% | 110.3 MiB/s |  36.8 MiB |  00m00s
[  8/163] Installing libquadmath-0:14.1 100% |  43.7 MiB/s | 491.7 KiB |  00m00s
[  9/163] Installing libmpc-0:1.3.1-5.f 100% |  33.9 MiB/s | 347.1 KiB |  00m00s
[ 10/163] Installing boost-regex-0:1.83 100% |  38.6 MiB/s | 395.2 KiB |  00m00s
[ 11/163] Installing boost-context-0:1. 100% |  38.5 MiB/s | 197.2 KiB |  00m00s
[ 12/163] Installing boost-atomic-0:1.8 100% |  32.2 MiB/s | 197.7 KiB |  00m00s
[ 13/163] Installing boost-filesystem-0 100% |  32.2 MiB/s | 263.8 KiB |  00m00s
[ 14/163] Installing libaec-0:1.1.2-1.f 100% |  40.2 MiB/s | 411.9 KiB |  00m00s
[ 15/163] Installing openblas-0:0.3.26- 100% |  15.9 MiB/s |  97.8 KiB |  00m00s
[ 16/163] Installing boost-date-time-0: 100% |  32.1 MiB/s | 197.0 KiB |  00m00s
[ 17/163] Installing boost-container-0: 100% |  14.9 MiB/s | 198.3 KiB |  00m00s
[ 18/163] Installing libstdc++-devel-0: 100% |  51.7 MiB/s |  15.4 MiB |  00m00s
[ 19/163] Installing boost-json-0:1.83. 100% |  44.6 MiB/s | 457.0 KiB |  00m00s
[ 20/163] Installing boost-wave-0:1.83. 100% |  49.1 MiB/s | 855.1 KiB |  00m00s
[ 21/163] Installing openblas-openmp64- 100% |  62.2 MiB/s |  23.4 MiB |  00m00s
[ 22/163] Installing openblas-openmp-0: 100% |  63.3 MiB/s |  23.6 MiB |  00m00s
[ 23/163] Installing flexiblas-netlib-0 100% |  63.9 MiB/s |  12.6 MiB |  00m00s
[ 24/163] Installing flexiblas-openblas 100% |  38.2 MiB/s | 195.8 KiB |  00m00s
[ 25/163] Installing flexiblas-netlib64 100% |  59.3 MiB/s |  12.4 MiB |  00m00s
[ 26/163] Installing flexiblas-openblas 100% |  47.8 MiB/s | 195.9 KiB |  00m00s
[ 27/163] Installing flexiblas-0:3.4.4- 100% |  16.2 MiB/s |  49.7 KiB |  00m00s
[ 28/163] Installing arpack-0:3.9.1-3.f 100% |  49.6 MiB/s | 812.0 KiB |  00m00s
[ 29/163] Installing arpack-devel-0:3.9 100% |  11.7 MiB/s |  72.1 KiB |  00m00s
[ 30/163] Installing flexiblas-devel-0: 100% |  83.6 MiB/s |   5.0 MiB |  00m00s
[ 31/163] Installing hdf5-0:1.12.1-15.f 100% |  67.5 MiB/s |  13.6 MiB |  00m00s
[ 32/163] Installing libaec-devel-0:1.1 100% |   4.2 MiB/s |  12.9 KiB |  00m00s
[ 33/163] Installing boost-fiber-0:1.83 100% |  32.4 MiB/s | 199.2 KiB |  00m00s
[ 34/163] Installing boost-log-0:1.83.0 100% |  58.4 MiB/s |   1.9 MiB |  00m00s
[ 35/163] Installing boost-coroutine-0: 100% |  38.7 MiB/s | 198.0 KiB |  00m00s
[ 36/163] Installing boost-graph-0:1.83 100% |  42.8 MiB/s | 526.2 KiB |  00m00s
[ 37/163] Installing cpp-0:14.1.1-4.fc4 100% |  56.3 MiB/s |  32.4 MiB |  00m01s
[ 38/163] Installing boost-locale-0:1.8 100% | 104.2 MiB/s | 853.4 KiB |  00m00s
[ 39/163] Installing libicu-devel-0:74. 100% |  92.3 MiB/s |   5.8 MiB |  00m00s
[ 40/163] Installing boost-type_erasure 100% |  97.2 MiB/s | 199.0 KiB |  00m00s
[ 41/163] Installing boost-timer-0:1.83 100% |  97.0 MiB/s | 198.7 KiB |  00m00s
[ 42/163] Installing ncurses-0:6.4-12.2 100% |  52.9 MiB/s |   1.7 MiB |  00m00s
>>> Running pre-install scriptlet: groff-base-0:1.23.0-6.fc40.ppc64le
>>> Stop pre-install scriptlet: groff-base-0:1.23.0-6.fc40.ppc64le
[ 43/163] Installing groff-base-0:1.23. 100% |  51.9 MiB/s |   5.4 MiB |  00m00s
>>> Running post-install scriptlet: groff-base-0:1.23.0-6.fc40.ppc64le
>>> Stop post-install scriptlet: groff-base-0:1.23.0-6.fc40.ppc64le
[ 44/163] Installing perl-Digest-0:1.20 100% |   9.0 MiB/s |  37.0 KiB |  00m00s
[ 45/163] Installing perl-B-0:1.88-507. 100% |  45.6 MiB/s | 607.7 KiB |  00m00s
[ 46/163] Installing perl-FileHandle-0: 100% |   4.8 MiB/s |   9.8 KiB |  00m00s
[ 47/163] Installing perl-Digest-MD5-0: 100% |  38.0 MiB/s | 233.3 KiB |  00m00s
[ 48/163] Installing perl-Data-Dumper-0 100% |  37.0 MiB/s | 265.3 KiB |  00m00s
[ 49/163] Installing perl-libnet-0:3.15 100% |  26.1 MiB/s | 294.3 KiB |  00m00s
[ 50/163] Installing perl-AutoLoader-0: 100% |   6.8 MiB/s |  20.9 KiB |  00m00s
[ 51/163] Installing perl-URI-0:5.28-1. 100% |  14.5 MiB/s | 251.8 KiB |  00m00s
[ 52/163] Installing perl-locale-0:1.10 100% |   3.2 MiB/s |   6.6 KiB |  00m00s
[ 53/163] Installing perl-File-Path-0:2 100% |  21.0 MiB/s |  64.5 KiB |  00m00s
[ 54/163] Installing perl-if-0:0.61.000 100% |   3.0 MiB/s |   6.2 KiB |  00m00s
[ 55/163] Installing perl-Mozilla-CA-0: 100% |   3.4 MiB/s |  10.5 KiB |  00m00s
[ 56/163] Installing perl-Time-Local-2: 100% |  17.2 MiB/s |  70.5 KiB |  00m00s
[ 57/163] Installing perl-Pod-Escapes-1 100% |   8.4 MiB/s |  25.9 KiB |  00m00s
[ 58/163] Installing perl-Text-Tabs+Wra 100% |   5.8 MiB/s |  23.8 KiB |  00m00s
[ 59/163] Installing perl-Net-SSLeay-0: 100% |  45.0 MiB/s |   1.6 MiB |  00m00s
[ 60/163] Installing perl-IO-Socket-IP- 100% |  19.6 MiB/s | 100.4 KiB |  00m00s
[ 61/163] Installing perl-IO-Socket-SSL 100% |  44.9 MiB/s | 689.0 KiB |  00m00s
[ 62/163] Installing perl-Class-Struct- 100% |  12.6 MiB/s |  25.9 KiB |  00m00s
[ 63/163] Installing perl-POSIX-0:2.13- 100% |  47.7 MiB/s | 391.2 KiB |  00m00s
[ 64/163] Installing perl-File-Temp-1:0 100% |  32.0 MiB/s | 164.0 KiB |  00m00s
[ 65/163] Installing perl-IPC-Open3-0:1 100% |   7.6 MiB/s |  23.3 KiB |  00m00s
[ 66/163] Installing perl-Term-ANSIColo 100% |  24.2 MiB/s |  99.1 KiB |  00m00s
[ 67/163] Installing perl-Term-Cap-0:1. 100% |   9.9 MiB/s |  30.5 KiB |  00m00s
[ 68/163] Installing perl-Pod-Simple-1: 100% |  34.8 MiB/s | 569.4 KiB |  00m00s
[ 69/163] Installing perl-HTTP-Tiny-0:0 100% |  21.5 MiB/s | 154.2 KiB |  00m00s
[ 70/163] Installing perl-Socket-4:2.03 100% |  38.2 MiB/s | 273.7 KiB |  00m00s
[ 71/163] Installing perl-File-stat-0:1 100% |   6.5 MiB/s |  13.2 KiB |  00m00s
[ 72/163] Installing perl-SelectSaver-0 100% |   1.3 MiB/s |   2.6 KiB |  00m00s
[ 73/163] Installing perl-Symbol-0:1.09 100% |   3.5 MiB/s |   7.2 KiB |  00m00s
[ 74/163] Installing perl-podlators-1:5 100% |  33.9 MiB/s | 312.1 KiB |  00m00s
[ 75/163] Installing perl-Pod-Perldoc-0 100% |  20.6 MiB/s | 168.6 KiB |  00m00s
[ 76/163] Installing perl-Text-ParseWor 100% |   7.1 MiB/s |  14.5 KiB |  00m00s
[ 77/163] Installing perl-mro-0:1.28-50 100% |  41.1 MiB/s | 210.4 KiB |  00m00s
[ 78/163] Installing perl-overloading-0 100% |   2.7 MiB/s |   5.5 KiB |  00m00s
[ 79/163] Installing perl-Fcntl-0:1.15- 100% |  49.2 MiB/s | 201.4 KiB |  00m00s
[ 80/163] Installing perl-IO-0:1.52-507 100% |  35.0 MiB/s | 322.9 KiB |  00m00s
[ 81/163] Installing perl-base-0:2.27-5 100% |   6.3 MiB/s |  12.9 KiB |  00m00s
[ 82/163] Installing perl-Pod-Usage-4:2 100% |  21.1 MiB/s |  86.3 KiB |  00m00s
[ 83/163] Installing perl-Errno-0:1.37- 100% |   4.3 MiB/s |   8.8 KiB |  00m00s
[ 84/163] Installing perl-constant-0:1. 100% |   8.9 MiB/s |  27.4 KiB |  00m00s
[ 85/163] Installing perl-Scalar-List-U 100% |  30.4 MiB/s | 280.5 KiB |  00m00s
[ 86/163] Installing perl-overload-0:1. 100% |  23.4 MiB/s |  71.9 KiB |  00m00s
[ 87/163] Installing perl-parent-1:0.24 100% |   5.1 MiB/s |  10.4 KiB |  00m00s
[ 88/163] Installing perl-vars-0:1.05-5 100% |   2.1 MiB/s |   4.3 KiB |  00m00s
[ 89/163] Installing perl-Getopt-Std-0: 100% |   5.7 MiB/s |  11.6 KiB |  00m00s
[ 90/163] Installing perl-MIME-Base64-0 100% |  36.5 MiB/s | 224.0 KiB |  00m00s
[ 91/163] Installing perl-Storable-1:3. 100% |  52.2 MiB/s | 373.8 KiB |  00m00s
[ 92/163] Installing perl-Getopt-Long-1 100% |  23.9 MiB/s | 146.9 KiB |  00m00s
[ 93/163] Installing perl-File-Basename 100% |   7.1 MiB/s |  14.6 KiB |  00m00s
[ 94/163] Installing perl-Carp-0:1.54-5 100% |  15.5 MiB/s |  47.7 KiB |  00m00s
[ 95/163] Installing perl-Exporter-0:5. 100% |  18.1 MiB/s |  55.5 KiB |  00m00s
[ 96/163] Installing perl-PathTools-0:3 100% |  34.8 MiB/s | 356.1 KiB |  00m00s
[ 97/163] Installing perl-DynaLoader-0: 100% |  15.9 MiB/s |  32.5 KiB |  00m00s
[ 98/163] Installing perl-Encode-4:3.21 100% |  72.9 MiB/s |   5.9 MiB |  00m00s
[ 99/163] Installing perl-libs-4:5.38.2 100% |  48.7 MiB/s |  11.7 MiB |  00m00s
[100/163] Installing perl-interpreter-4 100% |  49.0 MiB/s | 301.3 KiB |  00m00s
[101/163] Installing perl-threads-1:2.3 100% |  37.0 MiB/s | 265.1 KiB |  00m00s
[102/163] Installing perl-threads-share 100% |  32.6 MiB/s | 233.7 KiB |  00m00s
[103/163] Installing perl-Thread-Queue- 100% |   9.9 MiB/s |  30.3 KiB |  00m00s
[104/163] Installing perl-macros-4:5.38 100% |   5.6 MiB/s |   5.8 KiB |  00m00s
[105/163] Installing perl-Fedora-VSP-0: 100% |  13.2 MiB/s |  40.5 KiB |  00m00s
[106/163] Installing perl-File-Compare- 100% |   2.9 MiB/s |   6.0 KiB |  00m00s
[107/163] Installing perl-File-Copy-0:2 100% |   9.8 MiB/s |  20.2 KiB |  00m00s
[108/163] Installing perl-File-Find-0:1 100% |  13.8 MiB/s |  42.4 KiB |  00m00s
[109/163] Installing metis-0:5.1.0.3-5. 100% |  77.6 MiB/s |   2.2 MiB |  00m00s
[110/163] Installing SuperLU-0:6.0.1-5. 100% |  63.6 MiB/s | 651.4 KiB |  00m00s
[111/163] Installing armadillo-0:12.8.1 100% |  34.5 MiB/s | 211.8 KiB |  00m00s
[112/163] Installing cmake-filesystem-0 100% |   1.0 MiB/s |   7.1 KiB |  00m00s
[113/163] Installing SuperLU-devel-0:6. 100% |   7.9 MiB/s | 105.1 KiB |  00m00s
[114/163] Installing tzdata-0:2024a-8.f 100% |   8.8 MiB/s |   1.9 MiB |  00m00s
[115/163] Installing python-pip-wheel-0 100% |  95.5 MiB/s |   1.5 MiB |  00m00s
[116/163] Installing mpdecimal-0:2.5.1- 100% |  53.7 MiB/s | 330.0 KiB |  00m00s
[117/163] Installing libb2-0:0.98.1-11. 100% |  39.7 MiB/s | 203.2 KiB |  00m00s
[118/163] Installing expat-0:2.6.2-1.fc 100% |  28.0 MiB/s | 602.7 KiB |  00m00s
[119/163] Installing python3-libs-0:3.1 100% |  89.9 MiB/s |  51.9 MiB |  00m01s
[120/163] Installing python3-0:3.12.3-2 100% |  69.4 MiB/s | 213.1 KiB |  00m00s
[121/163] Installing boost-python3-0:1. 100% |  22.9 MiB/s | 398.5 KiB |  00m00s
[122/163] Installing python3-numpy-1:1. 100% |  78.3 MiB/s |  44.5 MiB |  00m01s
[123/163] Installing boost-numpy3-0:1.8 100% |  32.3 MiB/s | 198.3 KiB |  00m00s
[124/163] Installing m4-0:1.4.19-9.fc40 100% |  38.0 MiB/s | 739.0 KiB |  00m00s
[125/163] Installing emacs-filesystem-1 100% | 265.6 KiB/s | 544.0   B |  00m00s
[126/163] Installing autoconf-0:2.72-2. 100% |  71.7 MiB/s |   2.8 MiB |  00m00s
[127/163] Installing automake-0:1.16.5- 100% |  53.4 MiB/s |   1.8 MiB |  00m00s
[128/163] Installing libubsan-0:14.1.1- 100% |  65.4 MiB/s | 669.2 KiB |  00m00s
[129/163] Installing libatomic-0:14.1.1 100% |  64.1 MiB/s | 197.0 KiB |  00m00s
[130/163] Installing libasan-0:14.1.1-4 100% |  89.9 MiB/s |   2.0 MiB |  00m00s
[131/163] Installing annobin-docs-0:12. 100% |  11.9 MiB/s |  97.3 KiB |  00m00s
[132/163] Installing kernel-headers-0:6 100% |  34.8 MiB/s |   6.4 MiB |  00m00s
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[135/163] Installing gc-0:8.2.2-6.fc40. 100% |  68.8 MiB/s | 916.5 KiB |  00m00s
[136/163] Installing guile30-0:3.0.9-1. 100% |  97.5 MiB/s |  53.4 MiB |  00m01s
[137/163] Installing make-1:4.4.1-6.fc4 100% |  66.0 MiB/s |   1.9 MiB |  00m00s
[138/163] Installing gcc-0:14.1.1-4.fc4 100% |  93.9 MiB/s |  93.0 MiB |  00m01s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:291-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:291-1.fc41.noarch
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>>> Running trigger-install scriptlet: redhat-rpm-config-0:291-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:291-1.fc41.noarch
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>>> Running trigger-install scriptlet: redhat-rpm-config-0:291-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:291-1.fc41.noarch
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>>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-18.fc41.ppc64le
>>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-18.fc41.ppc64le
>>> Running trigger-install scriptlet: info-0:7.1-2.fc40.ppc64le
>>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.ppc64le
Warning: skipped PGP checks for 161 package(s).
Finish: build setup for mmseq-1.0.11-19.fc41.src.rpm
Start: rpmbuild mmseq-1.0.11-19.fc41.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1706140800
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.q48ZEV
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ZkmjfV
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf mmseq-1.0.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.11
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #2 (mmseq-zlib.patch):
+ echo 'Patch #2 (mmseq-zlib.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
+ rm -f bin/offsetGTF-linux bin/postdiff-linux
+ sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Sd2rN4
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ cd src
+ make -j5 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp 
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection    -c -o fasta.o fasta.c
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -O3 offsetGTF.cpp -o ../bin/offsetGTF
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -O3 t2g_hits.cpp -o ../bin/t2g_hits
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
offsetGTF.cpp: In function ‘int main(int, char**)’:
offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  115 |       while(gff_ind < gff_positions[chrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  117 |               pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable ‘curoff’ [-Wunused-variable]
  114 |       int curoff=offset;
      |           ^~~~~~
offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  150 |       while(gff_ind < gff_positions[prevchrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  163 |           pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  177 |     while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
      |           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  235 |     for(int i=5; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  237 |       if(i < tokens.size()-1) {
      |          ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable ‘gff_pos’ [-Wunused-variable]
  108 |   int gff_pos= -1;
      |       ^~~~~~~
t2g_hits.cpp: In function ‘int main(int, char**)’:
t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   90 |         for(int i=2; i < tokens.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~
t2g_hits.cpp:112:13: warning: ignoring return value of ‘_FIter std::unique(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<__cxx11::basic_string<char>*, vector<__cxx11::basic_string<char> > >]’, declared with attribute ‘nodiscard’ [-Wunused-result]
  112 |       unique(comb.begin(), comb.end());
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
                 from t2g_hits.cpp:27:
/usr/include/c++/14/bits/stl_algo.h:891:5: note: declared here
  891 |     unique(_ForwardIterator __first, _ForwardIterator __last)
      |     ^~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
extract_transcripts.cpp: In function ‘int main(int, char**)’:
extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  122 |       for(int i=0; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  169 |     for(int i=0; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  195 |       for(int i=0; i < it->starts()->size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~
extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  203 |       while(faline < stitch.size()) {
      |             ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable ‘line’ [-Wunused-variable]
  108 |   int line=0;
      |       ^~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmcollapse.cpp: In function ‘void get_unidentifiable_transcripts(std::string, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, bool>&)’:
mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  158 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  213 |     for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  259 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)’:
mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  400 |   for(int s=0; s < R.n_slices; s++) {
      |                ~~^~~~~~~~~~~~
mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  401 |     for(int t=0; t < candidates.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  402 |       for(int j=1; j < indexes.size(); j++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  414 |     for(int j=1; j < indexes.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  417 |       for(int i=0; i < R.n_cols; i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  426 |   for(int i=0; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |   for(int i=1; i < tset.size(); i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  437 |   for(int i=1; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >)’:
mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  445 |   for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
      |                ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  452 |   for(int c=0; c < candidates.size(); c++) {
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  456 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  464 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  469 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  476 |   for(int i=0; i < toshed.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)’:
mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  486 |     for(int v= 0; v < R.n_rows; v++) {
      |                   ~~^~~~~~~~~~
mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
  492 |       for(int i=0; i < u.size(); i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp: In function ‘void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&)’:
mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  519 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  543 |         for(int t=0; t < tokens.size(); t++) {
      |                      ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘int main(int, char**)’:
mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  632 |   for(int i=1; i < basenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  691 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  707 |   for(int i=0; i < candidates.size(); i++) ts.push_back(i);
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  732 |     for(int i=0 ;i < maxcorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  738 |     for(int i=0 ;i < mincorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  802 |         for(int i=0 ;i < maxcorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  808 |         for(int i=0 ;i < mincorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  827 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  852 |       for(int t=0; t < tokens.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  882 |       for(int t=0; t < tokens2.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  934 |     for(int t=0; t < M.n_cols; t++) {
      |                  ~~^~~~~~~~~~
mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  963 |     for(int i=1; i < tokens2.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  976 |       if(MM.size1() < i+1 ) factor1=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  977 |       if(MM.size2() < j+1 ) factor2=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1010 |     for(int t=0; t < ids.size(); t++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1083 |     for(int i=0; i < ids.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1092 |     for(int v = 0; v < M.n_cols; v++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:840:9: warning: unused variable ‘isident’ [-Wunused-variable]
  840 |     int isident=0;
      |         ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
mmseq.cpp: In function ‘std::vector<double> meanvar(std::vector<double>, double, double)’:
mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  130 |   for(int i=0;i < v.size(); i++) {
      |               ~~^~~~~~~~~~
mmseq.cpp: In function ‘int main(int, char**)’:
mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  244 |       for(int i=0; i < tokens.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~
mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  423 |       if(M.size1() < m ) factor1=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  424 |       if(M.size2() < n ) factor2=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  594 |   for(unsigned t=0; t < n; t++)  {
      |                     ~~^~~
mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  736 |     for(unsigned t=0; t < n; t++)
      |                       ~~^~~
mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  765 |       for(unsigned t=0; t < n; t++)
      |                         ~~^~~
mmseq.cpp:774:11: warning: unused variable ‘threadid’ [-Wunused-variable]
  774 |       int threadid=OMP_GET_THREAD_NUM;
      |           ^~~~~~~~
mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  829 |   for(unsigned t=0; t < n; t++)
      |                     ~~^~~
mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  912 |       for(unsigned t=0; t < n; t++) {
      |                         ~~^~~
mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  940 |   for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  961 |   for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1098 |   for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
      |                     ~~^~~
mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1112 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1136 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1144 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1149 |   for(int i=0;i < identical_transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1156 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1161 |   for(int i=0;i < gene2transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1168 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1179 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1189 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1208 |     for(int t=0; t < identical_transcripts.size() ; t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1212 |     for(int t=0; t < gene2transcripts.size(); t++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1226 |   for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1227 |   for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1330 |   for(int t=0; t < identical_transcripts.size(); t++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1349 |   for(int g=0; g < gene2transcripts.size(); g++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1473 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1475 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1482 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1484 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1506 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1508 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1514 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1516 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1536 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1538 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1544 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1546 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1560 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1562 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1582 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1584 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1599 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1601 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1619 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1621 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1644 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1646 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1656 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1658 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:308:8: warning: unused variable ‘buf16384’ [-Wunused-variable]
  308 |   char buf16384[16384];
      |        ^~~~~~~~
mmseq.cpp:391:8: warning: variable ‘doublehit’ set but not used [-Wunused-but-set-variable]
  391 |   bool doublehit;
      |        ^~~~~~~~~
hitstools.cpp: In function ‘void convert(char*, std::string)’:
hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   51 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function ‘int main(int, char**)’:
hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |                 for(int i = 0; i < transcriptName.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  136 |     for(int i = 0; i < transcriptName.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp: In function ‘void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)’:
bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  109 |   for(int i=0; i < sortedfastas.size()-1; i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  119 |       for(int j=0; j < curSet.size()-1; j++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  137 |   for(int j=0; j < curSet.size()-1; j++) {
      |                ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp: In function ‘std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)’:
bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Alignment>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |   for(int j=0; j < alns.size(); j++) {
      |                ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  219 |     if(i < torem.size() && j==torem[i]) {
      |        ~~^~~~~~~~~~~~~~
bam2hits.cpp: In function ‘int main(int, char**)’:
bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  518 |         if(_B != tg[0].size()-2) {
      |            ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  520 |           if(_A == tg[0].size()-2) {
      |              ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  522 |             if(_A != tg[1].size()-2) {
      |                ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  558 |       for(int i=1; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  609 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  645 |     for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
      |                 ~~^~~~~~~~~~~~~~~
bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  659 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  662 |         for(int j =0; j < fastas[i].seq().size(); j++) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  663 |           int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
      |                                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  791 |       for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  920 |     for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  948 |     for(int i=0; i < testIsizes.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  959 |     for(int i=0; i < heights.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  997 |       for(int fl=1; fl <= (it->seq()).size(); fl++) {
      |                     ~~~^~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:1091:56: warning: comparing the result of pointer addition ‘(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >::operator->()->Alignment::NM()))’ and NULL [-Waddress]
 1091 |             ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM")));
      |                                                        ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmdiff.cpp: In function ‘void parse_mmseq(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)’:
mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  100 |   for(int i=0; i < filenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  111 |     for(int j=0; j < tokens.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  138 |       if(k + 1 > features.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  147 |       if(k+1 > y.n_rows) {
      |          ~~~~^~~~~~~~~~
mmdiff.cpp:152:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  152 |       if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
      |          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  173 |   if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
      |                                                    ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:94:46: warning: variable ‘mcse_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                              ^~~~~~~~
mmdiff.cpp:94:59: warning: variable ‘iact_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                                           ^~~~~~~~
mmdiff.cpp: In function ‘void apply_normalisation(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, arma::Mat<double>&, arma::Mat<double>&, double)’:
mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  212 |   for(int i=0; i < uh.n_rows; i++) {
      |                ~~^~~~~~~~~~~
mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  214 |     for(int j=0; j < uh.n_cols; j++) {
      |                  ~~^~~~~~~~~~~
mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  230 |   for(int i=0; i < use.size(); i++) {
      |                ~~^~~~~~~~~~~~
mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  232 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  239 |   for(int sample=0; sample < y.n_cols; sample++) {
      |                     ~~~~~~~^~~~~~~~~~
mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  241 |     for(int i=0; i < use.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  246 |     for(int i=0; i < y.n_rows; i++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)’:
mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  257 |   for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
      |                ~^~~~~~~~~~
mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  258 |   for(int i=0; i < y.n_rows; i++) {
      |                ~~^~~~~~~~~~
mmdiff.cpp:259:19: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<int*, vector<int, allocator<int> > >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
  259 |     random_shuffle(randinds.begin(), randinds.end());
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
                 from mmdiff.cpp:31:
/usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here
 4491 |     random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
      |     ^~~~~~~~~~~~~~
mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  260 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void parse_matrices(std::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)’:
mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  310 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function ‘int main(int, char**)’:
mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  420 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  439 |       while(ss < arguments.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  451 |       if(ss != arguments.size()) {
      |          ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  578 |   for(int i=0; i < arguments.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  640 |     for(int i=0; i < simple_de.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:759:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  759 |     if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  764 |     for(int feature=0; feature < features.size(); feature++) {
      |                        ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:837:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  837 |     if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  886 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  898 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string<char>::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare]
  902 |       found2 = found2==string::npos ? -1 : found2;
      |                ~~~~~~^~~~~~~~~~~~~~
mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  907 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  909 |     if(f < samplenames.size()-1) cout << "\t";
      |        ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  914 |   for(int feature=0; feature < features.size(); feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  926 |         for(int l=0; l < M.n_cols; l++) {
      |                      ~~^~~~~~~~~~
mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  936 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  939 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  941 |       if(f < samplenames.size()-1) cout << "\t";
      |          ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  951 |       for(int feature=0; feature < features.size(); feature++) {
      |                          ~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/bin/ld: /tmp/ccemQjj0.ltrans0.ltrans.o: in function `main':
/builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/src/bam2hits.cpp:653:(.text.startup+0x2cf4): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.fIZ3z9
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ '[' /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
++ dirname /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ mkdir /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ /usr/bin/find-debuginfo -j5 --strict-build-id -m -i --build-id-seed 1.0.11-19.fc41 --unique-debug-suffix -1.0.11-19.fc41.ppc64le --unique-debug-src-base mmseq-1.0.11-19.fc41.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11
find-debuginfo: starting
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/mmseq-1.0.11-19.fc41.ppc64le
542 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j5
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j5 /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
Cannot initialize handler pyc: ModuleNotFoundError: No module named 'marshalparser'
[src/multiprocess.rs:66:9] &cmd = Command {
    program: "/usr/bin/add-determinism",
    args: [
        "/usr/bin/add-determinism",
        "--socket",
        "3",
        "--brp",
        "--handler",
        "ar,jar,javadoc",
    ],
    env: CommandEnv {
        clear: false,
        vars: {
            "SOURCE_DATE_EPOCH": Some(
                "1706140800",
            ),
        },
    },
    create_pidfd: false,
}
Bye!
Bye!
Bye!
Bye!
Bye!
Reading /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Nl50b7
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
++ bin/mmseq --version
++ true
+ test mmseq-1.0.11 = mmseq-1.0.11
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: mmseq-1.0.11-19.fc41.ppc64le
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.SlqCWa
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd mmseq-1.0.11
+ DOCDIR=/builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/README.md /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/COPYING /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/doc /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: mmseq = 1.0.11-19.fc41 mmseq(ppc-64) = 1.0.11-19.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh libboost_iostreams.so.1.83.0()(64bit) libboost_regex.so.1.83.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debugsource-1.0.11-19.fc41.ppc64le
Provides: mmseq-debugsource = 1.0.11-19.fc41 mmseq-debugsource(ppc-64) = 1.0.11-19.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: mmseq-debuginfo-1.0.11-19.fc41.ppc64le
Provides: debuginfo(build-id) = 07c2c16ce4549a77f333db3871c5bd1de7f1355d debuginfo(build-id) = 3113ec4c7096108b6ca703036472c0cd5a20fc30 debuginfo(build-id) = 3bb62354e430bf8f7b5a3480b9473966590886bf debuginfo(build-id) = 614250cd413b506512efb5a9fbca9e35bb83316f debuginfo(build-id) = 9f4e2a33e650fafa40588bfac6c6caee5e0e23ba debuginfo(build-id) = d2d593ca357c7b8cb7afcbd32a3a5f952478a83a debuginfo(build-id) = f90de5265b5436d1879b6bc528a83d664f457544 debuginfo(build-id) = fd0054869b46c1266a2eaf08085d7306b1cfed32 mmseq-debuginfo = 1.0.11-19.fc41 mmseq-debuginfo(ppc-64) = 1.0.11-19.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: mmseq-debugsource(ppc-64) = 1.0.11-19.fc41
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-19.fc41.ppc64le.rpm
Wrote: /builddir/build/RPMS/mmseq-1.0.11-19.fc41.ppc64le.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-19.fc41.ppc64le.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.LeEvdG
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild mmseq-1.0.11-19.fc41.src.rpm
Finish: build phase for mmseq-1.0.11-19.fc41.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-40-ppc64le-1717079273.067125/root/var/log/dnf5.log
INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-19.fc41.src.rpm) Config(child) 1 minutes 44 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "19.fc41",
            "arch": "src"
        },
        {
            "name": "mmseq-debugsource",
            "epoch": null,
            "version": "1.0.11",
            "release": "19.fc41",
            "arch": "ppc64le"
        },
        {
            "name": "mmseq-debuginfo",
            "epoch": null,
            "version": "1.0.11",
            "release": "19.fc41",
            "arch": "ppc64le"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "19.fc41",
            "arch": "ppc64le"
        }
    ]
}
RPMResults finished