%define packname Biobase
%define Rversion 3.4.0
Name: R-%{packname}
Version: 2.56.0
Release: 10%{dist}
Summary: Base functions for Bioconductor
License: Artistic-2.0
URL: http://bioconductor.org/packages/release/bioc/html/Biobase.html
Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
BuildRequires: R-devel >= %{Rversion} tex(latex) R-tkWidgets R-BiocGenerics >= 0.27.1 R-utils R-methods
%description
Base functions for Bioconductor (bioconductor.org). Biobase provides
functions that are needed by many other Bioconductor packages or which
replace R functions.
%description -l fr
Bibliothèque contenant des fonctions requises par d'autres bibliothèques
ou qui remplacent certaines fonctions dans R
%prep
%setup -c -q -n %{packname}
%build
%install
rm -rf %{buildroot}
mkdir -p %{buildroot}%{_libdir}/R/library
%{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
# Clean up in advance of check
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -rf %{buildroot}%{_libdir}/R/library/R.css
%check
# This library ask for the library ALL which can not be compiled without
# R-Biobase
#%{_bindir}/R CMD check %{packname}
%files
%dir %{_libdir}/R/library/%{packname}
%{_libdir}/R/library/%{packname}/INDEX
%{_libdir}/R/library/%{packname}/Meta/
%{_libdir}/R/library/%{packname}/R/
%{_libdir}/R/library/%{packname}/help/
%{_libdir}/R/library/%{packname}/libs/
%{_libdir}/R/library/%{packname}/NAMESPACE
%{_libdir}/R/library/%{packname}/unitTests/
%{_libdir}/R/library/%{packname}/data
%{_libdir}/R/library/%{packname}/scripts
%{_libdir}/R/library/%{packname}/ExpressionSet
%{_libdir}/R/library/%{packname}/CITATION
%{_libdir}/R/library/%{packname}/Code
%{_libdir}/R/library/%{packname}/extdata
%{_libdir}/R/library/%{packname}/testClass.R
%{_libdir}/R/library/%{packname}/NEWS
%doc %{_libdir}/R/library/%{packname}/doc
%{_libdir}/R/library/%{packname}/DESCRIPTION
%doc %{_libdir}/R/library/%{packname}/html
%changelog
* Thu Jan 16 2025 Fedora Release Engineering <releng@fedoraproject.org> - 2.56.0-10
- Rebuilt for https://fedoraproject.org/wiki/Fedora_42_Mass_Rebuild
* Wed Jul 17 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.56.0-9
- Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild
* Thu Apr 25 2024 Iñaki Úcar <iucar@fedoraproject.org> - 2.56.0-8
- R-maint-sig mass rebuild
* Sat Apr 20 2024 Miroslav Suchý <msuchy@redhat.com> - 2.56.0-7
- convert license to SPDX
* Mon Jan 22 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.56.0-6
- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Fri Jan 19 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.56.0-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Wed Jul 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.56.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
* Fri Apr 21 2023 Iñaki Úcar <iucar@fedoraproject.org> - 2.56.0-3
- R-maint-sig mass rebuild
* Wed Jan 18 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.56.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Fri Sep 2 2022 Tom Callaway <spot@fedoraproject.org> - 2.56.0-1
- update to 2.56.0
- rebuild for R 4.2.1
* Wed Jul 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.50.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Wed Jan 19 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.50.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 2.50.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
* Wed Feb 3 2021 Tom Callaway <spot@fedoraproject.org> - 2.50.0-1
- update to 2.50.0
* Mon Jan 25 2021 Fedora Release Engineering <releng@fedoraproject.org> - 2.48.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
* Mon Jul 27 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.48.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
* Sun Jun 7 2020 Tom Callaway <spot@fedoraproject.org> - 2.48.0-1
- update to 2.48.0
- rebuild for R 4
* Tue Jan 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.46.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
* Mon Nov 4 2019 Tom Callaway <spot@fedoraproject.org> - 2.46.0-1
- update to 2.46.0
* Mon Aug 12 2019 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.40.0-5
- Remove explicit dependencies provided by automatic dependency generator
* Wed Jul 24 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.40.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
* Thu Jan 31 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.40.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
* Thu Jul 12 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.40.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
* Wed May 16 2018 Tom Callaway <spot@fedoraproject.org> - 2.40.0-1
- update to 2.40.0
* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.36.2-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
* Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.36.2-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.36.2-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
* Wed May 24 2017 Tom Callaway <spot@fedoraproject.org> - 2.36.2-1
- update to 2.36.2
* Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.28.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 2.28.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
* Tue Jun 16 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.28.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
* Wed Jun 3 2015 Tom Callaway <spot@fedoraproject.org> - 2.28.0-1
- update to 2.28.0
* Fri Aug 15 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.24.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
* Mon Jun 9 2014 Tom Callaway <spot@fedoraproject.org> - 2.24.0-1
- update to 2.24.0
* Fri Jun 06 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.22.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
* Thu May 22 2014 Pierre-Yves Chibon <pingou@pingoured.fr> - 2.22.0-2
- Fix the name of the unitTests folder RHBZ#1099885
* Mon Jan 27 2014 pingou <pingou@pingoured.fr> 2.22.0-1
- Update to version 2.22.0
* Fri Aug 02 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.20.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
* Tue Jul 16 2013 pingou <pingou@pingoured.fr> 2.20.1-1
- Update to version 2.20.1
* Sun Apr 07 2013 pingou <pingou@pingoured.fr> 2.20.0-1
- Update to version 2.20.0
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.18.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
* Tue Nov 27 2012 pingou <pingou@pingoured.fr> 2.18.0-1
- Update to version 2.18.0
- + BR: R-BiocGenerics
* Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.14.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
* Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.14.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
* Wed Nov 9 2011 Tom Callaway <spot@fedoraproject.org> 2.14.0-2
- rebuild for R 2.14.0
* Thu Nov 03 2011 pingou <pingou@pingoured.fr> 2.14.0-1
- Update to version 2.14.0
* Sun Jul 03 2011 pingou <pingou@pingoured.fr> 2.12.2-1
- Update to version 2.12.2
* Wed Jun 22 2011 pingou <pingou@pingoured.fr> 2.12.1-1
- Update to version 2.12.1
* Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.10.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
* Tue Oct 26 2010 pingou <pingou@pingoured.fr> 2.10.0-1
- Update to version 2.10.0
* Tue May 11 2010 pingou <pingou@pingoured.fr> 2.8.0-1
- Update to version 2.8.0
- Fix url to a more stable form
- Fix BR for latex
- Remove R on post/postun since there is no post/postun
* Thu Dec 17 2009 pingou <pingou@pingoured.fr> 2.6.1-1
- Update to 2.6.1
* Sat Nov 21 2009 pingou <pingou@pingoured.fr> 2.6.0-1
- Update to 2.6.0
- Remove %%post and %%postun
- Adapt %%files to R-2.10.0
* Fri Nov 20 2009 pingou <pingou@pingoured.fr> 2.4.1-2
- Rebuild
* Fri Jul 24 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.4.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
* Fri Jun 12 2009 pingou <pingou@pingoured.fr> 2.4.1-1
- Update to 2.4.1
- Remove bad french translation
* Tue Apr 28 2009 pingou <pingou@pingoured.fr> 2.4.0-1
- Update to Bioconductor 2.4 and R-2.9.0
* Mon Feb 23 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.2.2-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild
* Wed Feb 18 2009 pingou <pingou-at-pingoured.fr> 2.2.2-1
- New update
* Thu Jan 22 2009 pingou <pingoufc4-at-yahoo.fr> 2.2.1-1
- New update
* Thu Nov 20 2008 pingou <pingoufc4-at-yahoo.fr> 2.2.0-2
- Correct the Source0
* Mon Oct 27 2008 pingou <pingoufc4-at-yahoo.fr> 2.2.0-1
- Update to version 2.2.0 for R >= 2.8.0
* Wed Jun 25 2008 pingou <pingoufc4-at-yahoo.fr> 2.0.1-1
- Update to version 2.0.1
* Fri May 02 2008 Pingou <pingoufc4@yahoo.fr> 2.0.0-1
- Update to bioconductor 2.2
* Tue Feb 19 2008 Fedora Release Engineering <rel-eng@fedoraproject.org> - 1.16.1-5
- Autorebuild for GCC 4.3
* Tue Jan 08 2008 Pingou <pingoufc4@yahoo.fr> 1.16.1-4
- change on the BR
* Sun Nov 18 2007 Pingou <pingoufc4@yahoo.fr> 1.16.1-3
- Change on the description
* Sun Nov 18 2007 Pingou <pingoufc4@yahoo.fr> 1.16.1-2
- Change on the install command
- Change on the Requires
- Change on the description
* Mon Oct 08 2007 Pingou <pingoufc4@yahoo.fr> 1.16.1-1
- Update to bioconductor 2.1
* Fri Jul 13 2007 Pingou <pingoufc4@yahoo.fr> 1.14.0-4
- Change in the R and BR section to fit the guidelines
* Tue Jul 10 2007 Pingou <pingoufc4@yahoo.fr> 1.14.0-3
- Change in post and postun to fit the packaging guidelines
- Change in prep to fit the guidelines
* Mon Jun 24 2007 Pingou <pingoufc4@yahoo.fr> 1.14.0-2
- Change de %%doc to avoid redundancy
* Thu May 17 2007 Pingou <pingoufc4@yahoo.fr> 1.14.0-1
- Submitting to Fedora Extras
* Wed Apr 25 2007 Pingou <pingoufc4@yahoo.fr> 1.14.0-0.1
- Build of the rpm