Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c14a' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7791560-fedora-rawhide-i386 --chroot fedora-rawhide-i386


Version: 0.73
PID: 6523
Logging PID: 6524
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 7791560,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-i386',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'ac50afd4de554bca5b35a7cc879e258eccc429fc',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'mmseq',
 'package_version': '1.0.11-21',
 'project_dirname': 'openblas-0.3.23',
 'project_name': 'openblas-0.3.23',
 'project_owner': 'psimovec',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-rawhide-i386/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/',
            'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch',
            'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}],
 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/msuchy',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'submitter': 'https://src.fedoraproject.org/user/msuchy',
 'tags': [],
 'task_id': '7791560-fedora-rawhide-i386',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq /var/lib/copr-rpmbuild/workspace/workdir-s4t9ppzg/mmseq --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq', '/var/lib/copr-rpmbuild/workspace/workdir-s4t9ppzg/mmseq', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-s4t9ppzg/mmseq'...

Running: git checkout ac50afd4de554bca5b35a7cc879e258eccc429fc --

cmd: ['git', 'checkout', 'ac50afd4de554bca5b35a7cc879e258eccc429fc', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-s4t9ppzg/mmseq
rc: 0
stdout: 
stderr: Note: switching to 'ac50afd4de554bca5b35a7cc879e258eccc429fc'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at ac50afd automatic import of mmseq

Running: copr-distgit-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-s4t9ppzg/mmseq
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading 1.0.11.zip
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o 1.0.11.zip --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/mmseq/1.0.11.zip/md5/c727916d339d7a2111523800b621ce2b/1.0.11.zip
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 2781k  100 2781k    0     0  25.6M      0 --:--:-- --:--:-- --:--:-- 25.8M
INFO: Reading stdout from command: md5sum 1.0.11.zip

Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-s4t9ppzg/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-s4t9ppzg/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1721949972.732496 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-s4t9ppzg/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-s4t9ppzg/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1721949972.732496 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-s4t9ppzg/mmseq/mmseq.spec)  Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.6
INFO: Mock Version: 5.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1721949972.732496/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-i686-bootstrap-1721949972.732496/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/d903fea45c2958106d99bef1c8291bfeea045ccae665697691985f90c47daac7/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/d903fea45c2958106d99bef1c8291bfeea045ccae665697691985f90c47daac7/merged) with podman image umount
INFO: Package manager dnf5 detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf5 tooling
Updating and loading repositories:
 local                                  100% |  54.2 MiB/s |  14.0 MiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% |  48.9 MiB/s |  14.0 MiB |  00m00s
 Copr repository                        100% |  17.6 MiB/s |   2.9 MiB |  00m00s
Repositories loaded.
Nothing to do.
Package "dnf5-5.2.5.0-1.fc41.x86_64" is already installed.
Package "dnf5-plugins-5.2.5.0-1.fc41.x86_64" is already installed.

Finish(bootstrap): installing dnf5 tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1721949972.732496/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.92-5.fc41.x86_64
  rpm-sequoia-1.7.0-2.fc41.x86_64
  dnf5-5.2.5.0-1.fc41.x86_64
  dnf5-plugins-5.2.5.0-1.fc41.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 local                                  100% |  52.7 MiB/s |  12.6 MiB |  00m00s
 Copr repository                        100% |  21.5 MiB/s |   2.9 MiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% |  44.8 MiB/s |  12.6 MiB |  00m00s
Repositories loaded.
Package                            Arch   Version                    Repository                                                         Size
Installing group/module packages:
 bash                              i686   5.2.26-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.3 MiB
 bzip2                             i686   1.0.8-19.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  93.9 KiB
 coreutils                         i686   9.5-7.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.4 MiB
 cpio                              i686   2.15-2.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 diffutils                         i686   3.10-7.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 fedora-release                    noarch 41-0.16                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 findutils                         i686   1:4.10.0-4.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 gawk                              i686   5.3.0-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 glibc-minimal-langpack            i686   2.39.9000-35.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 grep                              i686   3.11-9.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 gzip                              i686   1.13-2.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 388.1 KiB
 info                              i686   7.1-3.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 360.4 KiB
 patch                             i686   2.7.6-25.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 298.0 KiB
 redhat-rpm-config                 noarch 293-1.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183.5 KiB
 rpm-build                         i686   4.19.92-5.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 170.3 KiB
 sed                               i686   4.9-3.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 860.6 KiB
 shadow-utils                      i686   2:4.15.1-9.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.0 MiB
 tar                               i686   2:1.35-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.0 MiB
 unzip                             i686   6.0-64.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 396.3 KiB
 util-linux                        i686   2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.5 MiB
 which                             i686   2.21-42.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  78.9 KiB
 xz                                i686   1:5.6.2-2.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
Installing dependencies:
 add-determinism                   i686   0.3.5-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.1 MiB
 alternatives                      i686   1.28-3.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  61.5 KiB
 ansible-srpm-macros               noarch 1-16.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.7 KiB
 audit-libs                        i686   4.0.1-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 337.9 KiB
 authselect                        i686   1.5.0-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 160.6 KiB
 authselect-libs                   i686   1.5.0-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 821.4 KiB
 basesystem                        noarch 11-21.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 binutils                          i686   2.42.50-20.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  25.3 MiB
 build-reproducibility-srpm-macros noarch 0.3.5-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 735.0   B
 bzip2-libs                        i686   1.0.8-19.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  76.0 KiB
 ca-certificates                   noarch 2024.2.68_v8.0.302-3.fc41  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 coreutils-common                  i686   9.5-7.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.2 MiB
 cracklib                          i686   2.9.11-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235.8 KiB
 crypto-policies                   noarch 20240717-2.git154fd4e.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 130.4 KiB
 curl                              i686   8.9.0-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 795.7 KiB
 cyrus-sasl-lib                    i686   2.1.28-27.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.5 MiB
 debugedit                         i686   5.0-17.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.9 KiB
 dwz                               i686   0.15-7.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 328.9 KiB
 ed                                i686   1.20.2-2.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 141.7 KiB
 efi-srpm-macros                   noarch 5-12.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.1 KiB
 elfutils                          i686   0.191-8.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.5 MiB
 elfutils-debuginfod-client        i686   0.191-8.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.3 KiB
 elfutils-default-yama-scope       noarch 0.191-8.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 KiB
 elfutils-libelf                   i686   0.191-8.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 elfutils-libs                     i686   0.191-8.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 700.8 KiB
 fedora-gpg-keys                   noarch 41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 124.7 KiB
 fedora-release-common             noarch 41-0.16                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.2 KiB
 fedora-release-identity-basic     noarch 41-0.16                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0   B
 fedora-repos                      noarch 41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.9 KiB
 fedora-repos-rawhide              noarch 41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 file                              i686   5.45-7.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  94.5 KiB
 file-libs                         i686   5.45-7.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.9 MiB
 filesystem                        i686   3.18-23.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  88.0   B
 fonts-srpm-macros                 noarch 1:2.0.5-17.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.8 KiB
 forge-srpm-macros                 noarch 0.3.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.0 KiB
 fpc-srpm-macros                   noarch 1.3-13.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0   B
 gdb-minimal                       i686   14.2-15.fc41               copr_base                                                      13.4 MiB
 gdbm                              i686   1:1.23-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 449.8 KiB
 gdbm-libs                         i686   1:1.23-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 124.6 KiB
 ghc-srpm-macros                   noarch 1.9.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 747.0   B
 glibc                             i686   2.39.9000-35.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.5 MiB
 glibc-common                      i686   2.39.9000-35.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 glibc-gconv-extra                 i686   2.39.9000-35.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.3 MiB
 gmp                               i686   1:6.3.0-2.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 738.5 KiB
 gnat-srpm-macros                  noarch 6-6.fc41                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 KiB
 go-srpm-macros                    noarch 3.6.0-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  60.8 KiB
 jansson                           i686   2.13.1-10.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  87.6 KiB
 kernel-srpm-macros                noarch 1.0-24.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 keyutils-libs                     i686   1.6.3-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.6 KiB
 krb5-libs                         i686   1.21.3-2.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 libacl                            i686   2.3.2-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.3 KiB
 libarchive                        i686   3.7.4-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 994.4 KiB
 libattr                           i686   2.5.2-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  23.8 KiB
 libblkid                          i686   2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 285.5 KiB
 libbrotli                         i686   1.1.0-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 859.5 KiB
 libcap                            i686   2.70-4.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 205.1 KiB
 libcap-ng                         i686   0.8.5-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.7 KiB
 libcom_err                        i686   1.47.1-3.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  58.4 KiB
 libcurl                           i686   8.9.0-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 846.1 KiB
 libeconf                          i686   0.6.2-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  61.2 KiB
 libevent                          i686   2.1.12-14.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 952.1 KiB
 libfdisk                          i686   2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 410.4 KiB
 libffi                            i686   3.4.6-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  81.6 KiB
 libgcc                            i686   14.1.1-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 301.7 KiB
 libgomp                           i686   14.1.1-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 526.5 KiB
 libidn2                           i686   2.3.7-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 324.3 KiB
 libmount                          i686   2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 387.0 KiB
 libnghttp2                        i686   1.62.1-2.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 173.5 KiB
 libnsl2                           i686   2.0.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.2 KiB
 libpkgconf                        i686   2.1.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.8 KiB
 libpsl                            i686   0.21.5-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  75.8 KiB
 libpwquality                      i686   1.4.5-11.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 410.6 KiB
 libselinux                        i686   3.7-5.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.3 KiB
 libsemanage                       i686   3.7-2.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 304.1 KiB
 libsepol                          i686   3.7-2.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 873.4 KiB
 libsmartcols                      i686   2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 179.7 KiB
 libssh                            i686   0.10.6-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 547.3 KiB
 libssh-config                     noarch 0.10.6-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.0   B
 libstdc++                         i686   14.1.1-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.8 MiB
 libtasn1                          i686   4.19.0-9.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 179.0 KiB
 libtirpc                          i686   1.3.5-0.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 213.8 KiB
 libtool-ltdl                      i686   2.4.7-12.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  69.4 KiB
 libunistring                      i686   1.1-8.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 libutempter                       i686   1.2.1-15.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  56.2 KiB
 libuuid                           i686   2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  44.7 KiB
 libverto                          i686   0.3.2-9.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.8 KiB
 libxcrypt                         i686   4.4.36-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 278.2 KiB
 libxml2                           i686   2.12.8-2.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 libzstd                           i686   1.5.6-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 727.1 KiB
 lua-libs                          i686   5.4.6-6.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 308.6 KiB
 lua-srpm-macros                   noarch 1-14.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 KiB
 lz4-libs                          i686   1.10.0-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.8 KiB
 mpfr                              i686   4.2.1-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 966.6 KiB
 ncurses-base                      noarch 6.5-2.20240629.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.3 KiB
 ncurses-libs                      i686   6.5-2.20240629.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 971.0 KiB
 ocaml-srpm-macros                 noarch 10-3.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 openblas-srpm-macros              noarch 2-18.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0   B
 openldap                          i686   2.6.8-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 677.7 KiB
 openssl-libs                      i686   1:3.2.2-5.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.3 MiB
 p11-kit                           i686   0.25.5-3.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 p11-kit-trust                     i686   0.25.5-3.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 361.6 KiB
 package-notes-srpm-macros         noarch 0.5-12.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 KiB
 pam                               i686   1.6.1-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 pam-libs                          i686   1.6.1-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 120.7 KiB
 pcre2                             i686   10.44-1.fc41.1             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 660.1 KiB
 pcre2-syntax                      noarch 10.44-1.fc41.1             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB
 perl-srpm-macros                  noarch 1-56.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0   B
 pkgconf                           i686   2.1.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  81.3 KiB
 pkgconf-m4                        noarch 2.1.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.9 KiB
 pkgconf-pkg-config                i686   2.1.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 979.0   B
 popt                              i686   1.19-7.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.0 KiB
 publicsuffix-list-dafsa           noarch 20240107-4.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.5 KiB
 pyproject-srpm-macros             noarch 1.14.0-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 python-srpm-macros                noarch 3.13-3.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  51.0 KiB
 qt5-srpm-macros                   noarch 5.15.14-3.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0   B
 qt6-srpm-macros                   noarch 6.7.2-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0   B
 readline                          i686   8.2-9.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 461.6 KiB
 rpm                               i686   4.19.92-5.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.0 MiB
 rpm-build-libs                    i686   4.19.92-5.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.4 KiB
 rpm-libs                          i686   4.19.92-5.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 756.9 KiB
 rpm-sequoia                       i686   1.7.0-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.6 MiB
 rust-srpm-macros                  noarch 26.3-1.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.8 KiB
 setup                             noarch 2.15.0-5.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB
 sqlite-libs                       i686   3.46.0-3.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 systemd-libs                      i686   256.4-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.0 MiB
 util-linux-core                   i686   2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 xxhash-libs                       i686   0.8.2-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 115.9 KiB
 xz-libs                           i686   1:5.6.2-2.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 229.8 KiB
 zig-srpm-macros                   noarch 1-3.fc41                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 KiB
 zip                               i686   3.0-41.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 707.1 KiB
 zlib-ng-compat                    i686   2.1.7-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.4 KiB
 zstd                              i686   1.5.6-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
Installing groups:
 build                                                                                                                                      

Transaction Summary:
 Installing:      154 packages

Total size of inbound packages is 53 MiB. Need to download 53 MiB.
After this operation 175 MiB will be used (install 175 MiB, remove 0 B).
[  1/154] bzip2-0:1.0.8-19.fc41.i686    100% | 787.4 KiB/s |  52.8 KiB |  00m00s
[  2/154] cpio-0:2.15-2.fc41.i686       100% |   8.1 MiB/s | 290.8 KiB |  00m00s
[  3/154] coreutils-0:9.5-7.fc41.i686   100% |   9.9 MiB/s |   1.2 MiB |  00m00s
[  4/154] bash-0:5.2.26-4.fc41.i686     100% |  14.7 MiB/s |   1.8 MiB |  00m00s
[  5/154] diffutils-0:3.10-7.fc41.i686  100% |  13.1 MiB/s | 403.1 KiB |  00m00s
[  6/154] fedora-release-0:41-0.16.noar 100% | 649.6 KiB/s |  11.7 KiB |  00m00s
[  7/154] findutils-1:4.10.0-4.fc41.i68 100% |  22.4 MiB/s | 551.1 KiB |  00m00s
[  8/154] glibc-minimal-langpack-0:2.39 100% |   4.8 MiB/s | 122.9 KiB |  00m00s
[  9/154] gawk-0:5.3.0-4.fc41.i686      100% |  33.8 MiB/s |   1.0 MiB |  00m00s
[ 10/154] grep-0:3.11-9.fc41.i686       100% |  11.5 MiB/s | 295.5 KiB |  00m00s
[ 11/154] gzip-0:1.13-2.fc41.i686       100% |   8.4 MiB/s | 162.6 KiB |  00m00s
[ 12/154] info-0:7.1-3.fc41.i686        100% |   9.1 MiB/s | 186.0 KiB |  00m00s
[ 13/154] patch-0:2.7.6-25.fc41.i686    100% |   6.9 MiB/s | 142.2 KiB |  00m00s
[ 14/154] redhat-rpm-config-0:293-1.fc4 100% |   3.7 MiB/s |  75.5 KiB |  00m00s
[ 15/154] rpm-build-0:4.19.92-5.fc41.i6 100% |   3.6 MiB/s |  76.9 KiB |  00m00s
[ 16/154] sed-0:4.9-3.fc41.i686         100% |  13.8 MiB/s | 311.4 KiB |  00m00s
[ 17/154] unzip-0:6.0-64.fc41.i686      100% |   7.4 MiB/s | 180.7 KiB |  00m00s
[ 18/154] shadow-utils-2:4.15.1-9.fc41. 100% |  29.3 MiB/s |   1.3 MiB |  00m00s
[ 19/154] tar-2:1.35-4.fc41.i686        100% |  21.2 MiB/s | 866.7 KiB |  00m00s
[ 20/154] which-0:2.21-42.fc41.i686     100% |   2.1 MiB/s |  41.5 KiB |  00m00s
[ 21/154] xz-1:5.6.2-2.fc41.i686        100% |  19.7 MiB/s | 462.9 KiB |  00m00s
[ 22/154] util-linux-0:2.40.2-4.fc41.i6 100% |  33.4 MiB/s |   1.2 MiB |  00m00s
[ 23/154] xz-libs-1:5.6.2-2.fc41.i686   100% |   5.4 MiB/s | 122.7 KiB |  00m00s
[ 24/154] audit-libs-0:4.0.1-4.fc41.i68 100% |   5.7 MiB/s | 129.3 KiB |  00m00s
[ 25/154] authselect-libs-0:1.5.0-7.fc4 100% |   9.6 MiB/s | 207.5 KiB |  00m00s
[ 26/154] glibc-0:2.39.9000-35.fc41.i68 100% |  38.9 MiB/s |   2.0 MiB |  00m00s
[ 27/154] libblkid-0:2.40.2-4.fc41.i686 100% |   7.1 MiB/s | 137.3 KiB |  00m00s
[ 28/154] libcap-ng-0:0.8.5-3.fc41.i686 100% |   1.8 MiB/s |  33.2 KiB |  00m00s
[ 29/154] libmount-0:2.40.2-4.fc41.i686 100% |   8.0 MiB/s | 163.0 KiB |  00m00s
[ 30/154] libfdisk-0:2.40.2-4.fc41.i686 100% |   8.2 MiB/s | 176.0 KiB |  00m00s
[ 31/154] libselinux-0:3.7-5.fc41.i686  100% |   5.0 MiB/s |  92.4 KiB |  00m00s
[ 32/154] libsmartcols-0:2.40.2-4.fc41. 100% |   4.7 MiB/s |  86.3 KiB |  00m00s
[ 33/154] libutempter-0:1.2.1-15.fc41.i 100% |   1.5 MiB/s |  26.9 KiB |  00m00s
[ 34/154] libuuid-0:2.40.2-4.fc41.i686  100% |   1.7 MiB/s |  30.6 KiB |  00m00s
[ 35/154] ncurses-libs-0:6.5-2.20240629 100% |  15.8 MiB/s | 355.3 KiB |  00m00s
[ 36/154] pam-0:1.6.1-4.fc41.i686       100% |  20.8 MiB/s | 532.1 KiB |  00m00s
[ 37/154] pam-libs-0:1.6.1-4.fc41.i686  100% |   2.5 MiB/s |  59.8 KiB |  00m00s
[ 38/154] readline-0:8.2-9.fc41.i686    100% |  10.7 MiB/s | 219.0 KiB |  00m00s
[ 39/154] systemd-libs-0:256.4-1.fc41.i 100% |  29.1 MiB/s | 773.8 KiB |  00m00s
[ 40/154] util-linux-core-0:2.40.2-4.fc 100% |  22.8 MiB/s | 536.5 KiB |  00m00s
[ 41/154] zlib-ng-compat-0:2.1.7-2.fc41 100% |   3.8 MiB/s |  82.1 KiB |  00m00s
[ 42/154] bzip2-libs-0:1.0.8-19.fc41.i6 100% |   2.1 MiB/s |  41.3 KiB |  00m00s
[ 43/154] libacl-0:2.3.2-2.fc41.i686    100% |   1.3 MiB/s |  26.0 KiB |  00m00s
[ 44/154] libcap-0:2.70-4.fc41.i686     100% |   4.5 MiB/s |  88.3 KiB |  00m00s
[ 45/154] libgcc-0:14.1.1-7.fc41.i686   100% |   6.9 MiB/s | 148.3 KiB |  00m00s
[ 46/154] libattr-0:2.5.2-4.fc41.i686   100% | 974.7 KiB/s |  18.5 KiB |  00m00s
[ 47/154] libeconf-0:0.6.2-3.fc41.i686  100% |   1.8 MiB/s |  34.1 KiB |  00m00s
[ 48/154] libsemanage-0:3.7-2.fc41.i686 100% |   5.8 MiB/s | 125.8 KiB |  00m00s
[ 49/154] libxcrypt-0:4.4.36-7.fc41.i68 100% |   6.2 MiB/s | 120.6 KiB |  00m00s
[ 50/154] setup-0:2.15.0-5.fc41.noarch  100% |   8.0 MiB/s | 148.3 KiB |  00m00s
[ 51/154] debugedit-0:5.0-17.fc41.i686  100% |   4.2 MiB/s |  81.1 KiB |  00m00s
[ 52/154] elfutils-libelf-0:0.191-8.fc4 100% |   8.4 MiB/s | 214.0 KiB |  00m00s
[ 53/154] elfutils-0:0.191-8.fc41.i686  100% |  10.4 MiB/s | 561.9 KiB |  00m00s
[ 54/154] file-0:5.45-7.fc41.i686       100% |   2.5 MiB/s |  49.1 KiB |  00m00s
[ 55/154] libarchive-0:3.7.4-3.fc41.i68 100% |  17.6 MiB/s | 451.3 KiB |  00m00s
[ 56/154] pkgconf-pkg-config-0:2.1.1-2. 100% | 497.8 KiB/s |  10.0 KiB |  00m00s
[ 57/154] binutils-0:2.42.50-20.fc41.i6 100% |  56.4 MiB/s |   5.9 MiB |  00m00s
[ 58/154] popt-0:1.19-7.fc41.i686       100% |   2.7 MiB/s |  61.5 KiB |  00m00s
[ 59/154] rpm-0:4.19.92-5.fc41.i686     100% |  22.2 MiB/s | 523.6 KiB |  00m00s
[ 60/154] rpm-build-libs-0:4.19.92-5.fc 100% |   5.7 MiB/s | 105.9 KiB |  00m00s
[ 61/154] rpm-libs-0:4.19.92-5.fc41.i68 100% |  15.8 MiB/s | 340.4 KiB |  00m00s
[ 62/154] zstd-0:1.5.6-2.fc41.i686      100% |  18.5 MiB/s | 455.8 KiB |  00m00s
[ 63/154] curl-0:8.9.0-1.fc41.i686      100% |  14.9 MiB/s | 319.9 KiB |  00m00s
[ 64/154] ansible-srpm-macros-0:1-16.fc 100% |   1.2 MiB/s |  20.8 KiB |  00m00s
[ 65/154] build-reproducibility-srpm-ma 100% | 654.5 KiB/s |  10.5 KiB |  00m00s
[ 66/154] glibc-gconv-extra-0:2.39.9000 100% |  39.9 MiB/s |   1.7 MiB |  00m00s
[ 67/154] dwz-0:0.15-7.fc41.i686        100% |   7.1 MiB/s | 145.9 KiB |  00m00s
[ 68/154] efi-srpm-macros-0:5-12.fc41.n 100% |   1.3 MiB/s |  22.4 KiB |  00m00s
[ 69/154] fonts-srpm-macros-1:2.0.5-17. 100% |   1.6 MiB/s |  27.0 KiB |  00m00s
[ 70/154] forge-srpm-macros-0:0.3.1-2.f 100% |   1.2 MiB/s |  19.5 KiB |  00m00s
[ 71/154] fpc-srpm-macros-0:1.3-13.fc41 100% | 497.6 KiB/s |   8.0 KiB |  00m00s
[ 72/154] ghc-srpm-macros-0:1.9.1-2.fc4 100% | 566.0 KiB/s |   9.1 KiB |  00m00s
[ 73/154] gnat-srpm-macros-0:6-6.fc41.n 100% | 559.5 KiB/s |   9.0 KiB |  00m00s
[ 74/154] go-srpm-macros-0:3.6.0-3.fc41 100% |   1.6 MiB/s |  28.0 KiB |  00m00s
[ 75/154] kernel-srpm-macros-0:1.0-24.f 100% | 580.5 KiB/s |   9.9 KiB |  00m00s
[ 76/154] lua-srpm-macros-0:1-14.fc41.n 100% | 554.9 KiB/s |   8.9 KiB |  00m00s
[ 77/154] ocaml-srpm-macros-0:10-3.fc41 100% | 575.0 KiB/s |   9.2 KiB |  00m00s
[ 78/154] openblas-srpm-macros-0:2-18.f 100% | 482.2 KiB/s |   7.7 KiB |  00m00s
[ 79/154] package-notes-srpm-macros-0:0 100% | 614.3 KiB/s |   9.8 KiB |  00m00s
[ 80/154] perl-srpm-macros-0:1-56.fc41. 100% | 532.0 KiB/s |   8.5 KiB |  00m00s
[ 81/154] pyproject-srpm-macros-0:1.14. 100% | 789.8 KiB/s |  13.4 KiB |  00m00s
[ 82/154] python-srpm-macros-0:3.13-3.f 100% |   1.4 MiB/s |  23.7 KiB |  00m00s
[ 83/154] qt5-srpm-macros-0:5.15.14-3.f 100% | 560.8 KiB/s |   9.0 KiB |  00m00s
[ 84/154] qt6-srpm-macros-0:6.7.2-3.fc4 100% | 536.9 KiB/s |   9.1 KiB |  00m00s
[ 85/154] rust-srpm-macros-0:26.3-1.fc4 100% | 781.5 KiB/s |  12.5 KiB |  00m00s
[ 86/154] zig-srpm-macros-0:1-3.fc41.no 100% | 477.8 KiB/s |   8.1 KiB |  00m00s
[ 87/154] zip-0:3.0-41.fc41.i686        100% |  13.1 MiB/s | 267.5 KiB |  00m00s
[ 88/154] pkgconf-0:2.1.1-2.fc41.i686   100% |   2.3 MiB/s |  44.2 KiB |  00m00s
[ 89/154] pkgconf-m4-0:2.1.1-2.fc41.noa 100% | 886.5 KiB/s |  14.2 KiB |  00m00s
[ 90/154] libpkgconf-0:2.1.1-2.fc41.i68 100% |   2.1 MiB/s |  41.8 KiB |  00m00s
[ 91/154] ed-0:1.20.2-2.fc41.i686       100% |   4.0 MiB/s |  81.2 KiB |  00m00s
[ 92/154] authselect-0:1.5.0-7.fc41.i68 100% |   7.3 MiB/s | 142.3 KiB |  00m00s
[ 93/154] gdbm-1:1.23-7.fc41.i686       100% |   7.7 MiB/s | 149.5 KiB |  00m00s
[ 94/154] gdbm-libs-1:1.23-7.fc41.i686  100% |   2.9 MiB/s |  59.8 KiB |  00m00s
[ 95/154] libnsl2-0:2.0.1-2.fc41.i686   100% |   1.7 MiB/s |  30.7 KiB |  00m00s
[ 96/154] libpwquality-0:1.4.5-11.fc41. 100% |   5.9 MiB/s | 109.0 KiB |  00m00s
[ 97/154] libtirpc-0:1.3.5-0.fc41.i686  100% |   5.2 MiB/s | 102.0 KiB |  00m00s
[ 98/154] crypto-policies-0:20240717-2. 100% |   3.2 MiB/s |  65.5 KiB |  00m00s
[ 99/154] openssl-libs-1:3.2.2-5.fc41.i 100% |  40.4 MiB/s |   2.3 MiB |  00m00s
[100/154] ncurses-base-0:6.5-2.20240629 100% |   3.1 MiB/s |  63.8 KiB |  00m00s
[101/154] ca-certificates-0:2024.2.68_v 100% |  19.3 MiB/s | 868.2 KiB |  00m00s
[102/154] libcom_err-0:1.47.1-3.fc41.i6 100% |   1.4 MiB/s |  26.9 KiB |  00m00s
[103/154] krb5-libs-0:1.21.3-2.fc41.i68 100% |  20.7 MiB/s | 804.5 KiB |  00m00s
[104/154] pcre2-0:10.44-1.fc41.1.i686   100% |  11.7 MiB/s | 240.0 KiB |  00m00s
[105/154] cracklib-0:2.9.11-6.fc41.i686 100% |   4.2 MiB/s |  82.5 KiB |  00m00s
[106/154] libxml2-0:2.12.8-2.fc41.i686  100% |  25.5 MiB/s | 730.6 KiB |  00m00s
[107/154] libzstd-0:1.5.6-2.fc41.i686   100% |  13.3 MiB/s | 285.8 KiB |  00m00s
[108/154] libsepol-0:3.7-2.fc41.i686    100% |   4.1 MiB/s | 355.7 KiB |  00m00s
[109/154] lz4-libs-0:1.10.0-1.fc41.i686 100% |   3.3 MiB/s |  73.5 KiB |  00m00s
[110/154] keyutils-libs-0:1.6.3-4.fc41. 100% |   1.6 MiB/s |  32.0 KiB |  00m00s
[111/154] libverto-0:0.3.2-9.fc41.i686  100% |   1.1 MiB/s |  21.2 KiB |  00m00s
[112/154] basesystem-0:11-21.fc41.noarc 100% | 460.8 KiB/s |   7.4 KiB |  00m00s
[113/154] glibc-common-0:2.39.9000-35.f 100% |  15.6 MiB/s | 414.3 KiB |  00m00s
[114/154] gmp-1:6.3.0-2.fc41.i686       100% |  12.7 MiB/s | 311.3 KiB |  00m00s
[115/154] mpfr-0:4.2.1-5.fc41.i686      100% |  15.7 MiB/s | 385.0 KiB |  00m00s
[116/154] filesystem-0:3.18-23.fc41.i68 100% |  26.7 MiB/s |   1.1 MiB |  00m00s
[117/154] fedora-release-common-0:41-0. 100% |   1.2 MiB/s |  22.5 KiB |  00m00s
[118/154] elfutils-debuginfod-client-0: 100% |   2.2 MiB/s |  37.6 KiB |  00m00s
[119/154] file-libs-0:5.45-7.fc41.i686  100% |  20.9 MiB/s | 770.6 KiB |  00m00s
[120/154] elfutils-libs-0:0.191-8.fc41. 100% |  14.2 MiB/s | 290.9 KiB |  00m00s
[121/154] libstdc++-0:14.1.1-7.fc41.i68 100% |  25.1 MiB/s | 952.3 KiB |  00m00s
[122/154] p11-kit-0:0.25.5-3.fc41.i686  100% |  19.6 MiB/s | 481.9 KiB |  00m00s
[123/154] p11-kit-trust-0:0.25.5-3.fc41 100% |   6.4 MiB/s | 137.8 KiB |  00m00s
[124/154] alternatives-0:1.28-3.fc41.i6 100% |   2.0 MiB/s |  41.6 KiB |  00m00s
[125/154] add-determinism-0:0.3.5-1.fc4 100% |  23.0 MiB/s | 870.8 KiB |  00m00s
[126/154] coreutils-common-0:9.5-7.fc41 100% |  28.3 MiB/s |   2.1 MiB |  00m00s
[127/154] jansson-0:2.13.1-10.fc41.i686 100% |   2.5 MiB/s |  45.9 KiB |  00m00s
[128/154] lua-libs-0:5.4.6-6.fc41.i686  100% |   6.9 MiB/s | 149.0 KiB |  00m00s
[129/154] rpm-sequoia-0:1.7.0-2.fc41.i6 100% |  23.9 MiB/s | 980.1 KiB |  00m00s
[130/154] libgomp-0:14.1.1-7.fc41.i686  100% |  13.8 MiB/s | 353.9 KiB |  00m00s
[131/154] sqlite-libs-0:3.46.0-3.fc41.i 100% |  18.9 MiB/s | 755.8 KiB |  00m00s
[132/154] pcre2-syntax-0:10.44-1.fc41.1 100% |   8.1 MiB/s | 149.9 KiB |  00m00s
[133/154] libtasn1-0:4.19.0-9.fc41.i686 100% |   3.9 MiB/s |  75.3 KiB |  00m00s
[134/154] libffi-0:3.4.6-2.fc41.i686    100% |   2.1 MiB/s |  38.1 KiB |  00m00s
[135/154] fedora-release-identity-basic 100% | 780.2 KiB/s |  12.5 KiB |  00m00s
[136/154] fedora-repos-0:41-0.2.noarch  100% | 583.1 KiB/s |   9.3 KiB |  00m00s
[137/154] elfutils-default-yama-scope-0 100% | 769.0 KiB/s |  12.3 KiB |  00m00s
[138/154] fedora-gpg-keys-0:41-0.2.noar 100% |   7.0 MiB/s | 121.8 KiB |  00m00s
[139/154] fedora-repos-rawhide-0:41-0.2 100% | 523.8 KiB/s |   8.9 KiB |  00m00s
[140/154] xxhash-libs-0:0.8.2-3.fc41.i6 100% |   2.3 MiB/s |  46.8 KiB |  00m00s
[141/154] libcurl-0:8.9.0-1.fc41.i686   100% |  13.6 MiB/s | 388.9 KiB |  00m00s
[142/154] libidn2-0:2.3.7-2.fc41.i686   100% |   5.8 MiB/s | 113.0 KiB |  00m00s
[143/154] libbrotli-0:1.1.0-5.fc41.i686 100% |  12.3 MiB/s | 339.4 KiB |  00m00s
[144/154] libpsl-0:0.21.5-4.fc41.i686   100% |   3.3 MiB/s |  64.7 KiB |  00m00s
[145/154] libnghttp2-0:1.62.1-2.fc41.i6 100% |   4.0 MiB/s |  82.4 KiB |  00m00s
[146/154] libssh-0:0.10.6-6.fc41.i686   100% |  10.1 MiB/s | 226.5 KiB |  00m00s
[147/154] openldap-0:2.6.8-5.fc41.i686  100% |  11.6 MiB/s | 272.3 KiB |  00m00s
[148/154] libevent-0:2.1.12-14.fc41.i68 100% |  11.8 MiB/s | 277.0 KiB |  00m00s
[149/154] cyrus-sasl-lib-0:2.1.28-27.fc 100% |  22.1 MiB/s | 860.0 KiB |  00m00s
[150/154] libtool-ltdl-0:2.4.7-12.fc41. 100% |   1.8 MiB/s |  37.7 KiB |  00m00s
[151/154] libssh-config-0:0.10.6-6.fc41 100% | 537.5 KiB/s |   9.1 KiB |  00m00s
[152/154] libunistring-0:1.1-8.fc41.i68 100% |  20.8 MiB/s | 553.3 KiB |  00m00s
[153/154] publicsuffix-list-dafsa-0:202 100% |   3.3 MiB/s |  58.3 KiB |  00m00s
[154/154] gdb-minimal-0:14.2-15.fc41.i6 100% |  12.1 MiB/s |   4.7 MiB |  00m00s
--------------------------------------------------------------------------------
[154/154] Total                         100% |  33.3 MiB/s |  53.4 MiB |  00m02s
Running transaction
[  1/156] Verify package files          100% | 777.0   B/s | 154.0   B |  00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-23.fc41.i686
>>> Stop pre-transaction scriptlet: filesystem-0:3.18-23.fc41.i686
[  2/156] Prepare transaction           100% |   1.9 KiB/s | 154.0   B |  00m00s
[  3/156] Installing libgcc-0:14.1.1-7. 100% | 148.1 MiB/s | 303.4 KiB |  00m00s
>>> Running post-install scriptlet: libgcc-0:14.1.1-7.fc41.i686
>>> Stop post-install scriptlet: libgcc-0:14.1.1-7.fc41.i686
[  4/156] Installing publicsuffix-list- 100% |  66.7 MiB/s |  68.3 KiB |  00m00s
[  5/156] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  6/156] Installing fedora-release-ide 100% |   0.0   B/s | 952.0   B |  00m00s
[  7/156] Installing fedora-gpg-keys-0: 100% |  20.7 MiB/s | 169.7 KiB |  00m00s
[  8/156] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[  9/156] Installing fedora-repos-0:41- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[ 10/156] Installing fedora-release-com 100% |  11.5 MiB/s |  23.5 KiB |  00m00s
[ 11/156] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 12/156] Installing setup-0:2.15.0-5.f 100% |  50.6 MiB/s | 726.1 KiB |  00m00s
>>> Running post-install scriptlet: setup-0:2.15.0-5.fc41.noarch
>>> Stop post-install scriptlet: setup-0:2.15.0-5.fc41.noarch
[ 13/156] Installing filesystem-0:3.18- 100% |   1.7 MiB/s | 212.0 KiB |  00m00s
[ 14/156] Installing basesystem-0:11-21 100% |   0.0   B/s | 124.0   B |  00m00s
[ 15/156] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB |  00m00s
[ 16/156] Installing coreutils-common-0 100% | 266.4 MiB/s |  11.2 MiB |  00m00s
[ 17/156] Installing ncurses-base-0:6.5 100% |  42.9 MiB/s | 351.7 KiB |  00m00s
[ 18/156] Installing pkgconf-m4-0:2.1.1 100% |   0.0   B/s |  14.3 KiB |  00m00s
[ 19/156] Installing rust-srpm-macros-0 100% |   0.0   B/s |   5.6 KiB |  00m00s
[ 20/156] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[ 21/156] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[ 22/156] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[ 23/156] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[ 24/156] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[ 25/156] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[ 26/156] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[ 27/156] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[ 28/156] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 29/156] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[ 30/156] Installing ansible-srpm-macro 100% |  35.4 MiB/s |  36.2 KiB |  00m00s
[ 31/156] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 32/156] Installing ncurses-libs-0:6.5 100% | 159.1 MiB/s | 977.6 KiB |  00m00s
>>> Running pre-install scriptlet: glibc-0:2.39.9000-35.fc41.i686
>>> Stop pre-install scriptlet: glibc-0:2.39.9000-35.fc41.i686
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[ 33/156] Installing glibc-0:2.39.9000- 100% | 110.1 MiB/s |   5.5 MiB |  00m00s
>>> Running post-install scriptlet: glibc-0:2.39.9000-35.fc41.i686
>>> Stop post-install scriptlet: glibc-0:2.39.9000-35.fc41.i686
[ 34/156] Installing bash-0:5.2.26-4.fc 100% | 259.4 MiB/s |   8.3 MiB |  00m00s
>>> Running post-install scriptlet: bash-0:5.2.26-4.fc41.i686
>>> Stop post-install scriptlet: bash-0:5.2.26-4.fc41.i686
[ 35/156] Installing glibc-common-0:2.3 100% | 113.9 MiB/s |   1.0 MiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[ 36/156] Installing glibc-gconv-extra- 100% | 118.8 MiB/s |   7.4 MiB |  00m00s
>>> Running post-install scriptlet: glibc-gconv-extra-0:2.39.9000-35.fc41.i686
>>> Stop post-install scriptlet: glibc-gconv-extra-0:2.39.9000-35.fc41.i686
[ 37/156] Installing zlib-ng-compat-0:2 100% | 146.7 MiB/s | 150.2 KiB |  00m00s
[ 38/156] Installing xz-libs-1:5.6.2-2. 100% | 225.4 MiB/s | 230.9 KiB |  00m00s
[ 39/156] Installing bzip2-libs-0:1.0.8 100% |  75.3 MiB/s |  77.1 KiB |  00m00s
[ 40/156] Installing libuuid-0:2.40.2-4 100% |  44.6 MiB/s |  45.7 KiB |  00m00s
[ 41/156] Installing readline-0:8.2-9.f 100% | 150.9 MiB/s | 463.7 KiB |  00m00s
[ 42/156] Installing popt-0:1.19-7.fc41 100% |  34.8 MiB/s | 142.6 KiB |  00m00s
[ 43/156] Installing libblkid-0:2.40.2- 100% | 279.8 MiB/s | 286.5 KiB |  00m00s
[ 44/156] Installing libattr-0:2.5.2-4. 100% |  24.1 MiB/s |  24.7 KiB |  00m00s
[ 45/156] Installing libacl-0:2.3.2-2.f 100% |  39.2 MiB/s |  40.1 KiB |  00m00s
[ 46/156] Installing libxcrypt-0:4.4.36 100% | 137.2 MiB/s | 280.9 KiB |  00m00s
[ 47/156] Installing libzstd-0:1.5.6-2. 100% | 237.1 MiB/s | 728.4 KiB |  00m00s
[ 48/156] Installing elfutils-libelf-0: 100% | 294.1 MiB/s |   1.2 MiB |  00m00s
[ 49/156] Installing gmp-1:6.3.0-2.fc41 100% | 241.1 MiB/s | 740.7 KiB |  00m00s
[ 50/156] Installing libstdc++-0:14.1.1 100% | 255.2 MiB/s |   2.8 MiB |  00m00s
[ 51/156] Installing libeconf-0:0.6.2-3 100% |  61.4 MiB/s |  62.9 KiB |  00m00s
[ 52/156] Installing gdbm-libs-1:1.23-7 100% |   8.8 MiB/s | 126.3 KiB |  00m00s
>>> Running pre-install scriptlet: crypto-policies-0:20240717-2.git154fd4e.fc41.
>>> Stop pre-install scriptlet: crypto-policies-0:20240717-2.git154fd4e.fc41.noa
[ 53/156] Installing crypto-policies-0: 100% |  15.2 MiB/s | 156.1 KiB |  00m00s
>>> Running post-install scriptlet: crypto-policies-0:20240717-2.git154fd4e.fc41
>>> Stop post-install scriptlet: crypto-policies-0:20240717-2.git154fd4e.fc41.no
[ 54/156] Installing mpfr-0:4.2.1-5.fc4 100% | 189.1 MiB/s | 968.2 KiB |  00m00s
[ 55/156] Installing gawk-0:5.3.0-4.fc4 100% | 192.4 MiB/s |   1.7 MiB |  00m00s
[ 56/156] Installing dwz-0:0.15-7.fc41. 100% | 161.3 MiB/s | 330.3 KiB |  00m00s
[ 57/156] Installing unzip-0:6.0-64.fc4 100% | 195.2 MiB/s | 399.8 KiB |  00m00s
[ 58/156] Installing file-libs-0:5.45-7 100% | 473.6 MiB/s |   9.9 MiB |  00m00s
[ 59/156] Installing file-0:5.45-7.fc41 100% |  93.8 MiB/s |  96.0 KiB |  00m00s
[ 60/156] Installing libcap-ng-0:0.8.5- 100% |  67.9 MiB/s |  69.5 KiB |  00m00s
[ 61/156] Installing audit-libs-0:4.0.1 100% | 166.0 MiB/s | 340.0 KiB |  00m00s
[ 62/156] Installing pam-libs-0:1.6.1-4 100% |  60.1 MiB/s | 123.1 KiB |  00m00s
[ 63/156] Installing libcap-0:2.70-4.fc 100% |  68.4 MiB/s | 210.0 KiB |  00m00s
[ 64/156] Installing systemd-libs-0:256 100% | 252.7 MiB/s |   2.0 MiB |  00m00s
[ 65/156] Installing libsmartcols-0:2.4 100% | 176.6 MiB/s | 180.9 KiB |  00m00s
[ 66/156] Installing libcom_err-0:1.47. 100% |  58.2 MiB/s |  59.6 KiB |  00m00s
[ 67/156] Installing libsepol-0:3.7-2.f 100% | 284.6 MiB/s | 874.4 KiB |  00m00s
[ 68/156] Installing pcre2-0:10.44-1.fc 100% | 215.3 MiB/s | 661.5 KiB |  00m00s
[ 69/156] Installing libselinux-0:3.7-5 100% | 189.0 MiB/s | 193.5 KiB |  00m00s
[ 70/156] Installing sed-0:4.9-3.fc41.i 100% | 121.2 MiB/s | 868.8 KiB |  00m00s
[ 71/156] Installing grep-0:3.11-9.fc41 100% | 125.8 MiB/s |   1.0 MiB |  00m00s
[ 72/156] Installing findutils-1:4.10.0 100% | 188.0 MiB/s |   1.9 MiB |  00m00s
[ 73/156] Installing xz-1:5.6.2-2.fc41. 100% | 134.1 MiB/s |   1.2 MiB |  00m00s
[ 74/156] Installing libmount-0:2.40.2- 100% | 189.5 MiB/s | 388.1 KiB |  00m00s
[ 75/156] Installing lz4-libs-0:1.10.0- 100% | 142.4 MiB/s | 145.9 KiB |  00m00s
[ 76/156] Installing alternatives-0:1.2 100% |  61.7 MiB/s |  63.1 KiB |  00m00s
[ 77/156] Installing lua-libs-0:5.4.6-6 100% | 151.3 MiB/s | 309.8 KiB |  00m00s
[ 78/156] Installing libtasn1-0:4.19.0- 100% | 176.6 MiB/s | 180.8 KiB |  00m00s
[ 79/156] Installing libunistring-0:1.1 100% | 289.0 MiB/s |   1.7 MiB |  00m00s
[ 80/156] Installing elfutils-default-y 100% | 185.7 KiB/s |   2.0 KiB |  00m00s
>>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.n
>>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.noar
[ 81/156] Installing elfutils-libs-0:0. 100% | 171.5 MiB/s | 702.6 KiB |  00m00s
[ 82/156] Installing libidn2-0:2.3.7-2. 100% |  80.6 MiB/s | 330.3 KiB |  00m00s
[ 83/156] Installing libpsl-0:0.21.5-4. 100% |  75.1 MiB/s |  76.9 KiB |  00m00s
[ 84/156] Installing zstd-0:1.5.6-2.fc4 100% | 260.6 MiB/s |   1.6 MiB |  00m00s
[ 85/156] Installing util-linux-core-0: 100% | 125.9 MiB/s |   1.4 MiB |  00m00s
[ 86/156] Installing tar-2:1.35-4.fc41. 100% | 230.7 MiB/s |   3.0 MiB |  00m00s
[ 87/156] Installing libsemanage-0:3.7- 100% |  99.6 MiB/s | 305.9 KiB |  00m00s
[ 88/156] Installing shadow-utils-2:4.1 100% |  76.9 MiB/s |   4.1 MiB |  00m00s
>>> Running pre-install scriptlet: libutempter-0:1.2.1-15.fc41.i686
>>> Stop pre-install scriptlet: libutempter-0:1.2.1-15.fc41.i686
[ 89/156] Installing libutempter-0:1.2. 100% |  28.4 MiB/s |  58.1 KiB |  00m00s
[ 90/156] Installing zip-0:3.0-41.fc41. 100% | 173.6 MiB/s | 711.0 KiB |  00m00s
[ 91/156] Installing gdbm-1:1.23-7.fc41 100% | 111.0 MiB/s | 454.7 KiB |  00m00s
[ 92/156] Installing cyrus-sasl-lib-0:2 100% | 248.1 MiB/s |   2.5 MiB |  00m00s
[ 93/156] Installing libfdisk-0:2.40.2- 100% | 200.9 MiB/s | 411.5 KiB |  00m00s
[ 94/156] Installing bzip2-0:1.0.8-19.f 100% |  48.1 MiB/s |  98.4 KiB |  00m00s
[ 95/156] Installing libxml2-0:2.12.8-2 100% | 258.7 MiB/s |   1.8 MiB |  00m00s
[ 96/156] Installing add-determinism-0: 100% | 297.7 MiB/s |   2.1 MiB |  00m00s
[ 97/156] Installing build-reproducibil 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 98/156] Installing sqlite-libs-0:3.46 100% | 250.0 MiB/s |   1.5 MiB |  00m00s
[ 99/156] Installing ed-0:1.20.2-2.fc41 100% | 140.6 MiB/s | 144.0 KiB |  00m00s
[100/156] Installing patch-0:2.7.6-25.f 100% | 146.2 MiB/s | 299.5 KiB |  00m00s
[101/156] Installing cpio-0:2.15-2.fc41 100% | 157.9 MiB/s |   1.1 MiB |  00m00s
[102/156] Installing diffutils-0:3.10-7 100% | 177.2 MiB/s |   1.6 MiB |  00m00s
[103/156] Installing libpkgconf-0:2.1.1 100% |  80.0 MiB/s |  81.9 KiB |  00m00s
[104/156] Installing pkgconf-0:2.1.1-2. 100% |  40.9 MiB/s |  83.8 KiB |  00m00s
[105/156] Installing pkgconf-pkg-config 100% |   0.0   B/s |   1.8 KiB |  00m00s
[106/156] Installing keyutils-libs-0:1. 100% |  57.7 MiB/s |  59.1 KiB |  00m00s
[107/156] Installing libverto-0:0.3.2-9 100% |  29.8 MiB/s |  30.6 KiB |  00m00s
[108/156] Installing jansson-0:2.13.1-1 100% |  86.9 MiB/s |  89.0 KiB |  00m00s
[109/156] Installing libgomp-0:14.1.1-7 100% | 257.8 MiB/s | 527.9 KiB |  00m00s
[110/156] Installing libffi-0:3.4.6-2.f 100% |  81.0 MiB/s |  82.9 KiB |  00m00s
[111/156] Installing p11-kit-0:0.25.5-3 100% | 155.5 MiB/s |   2.3 MiB |  00m00s
[112/156] Installing p11-kit-trust-0:0. 100% |  22.2 MiB/s | 363.2 KiB |  00m00s
>>> Running post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.i686
>>> Stop post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.i686
[113/156] Installing openssl-libs-1:3.2 100% | 261.1 MiB/s |   6.3 MiB |  00m00s
[114/156] Installing coreutils-0:9.5-7. 100% | 140.5 MiB/s |   5.5 MiB |  00m00s
>>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.n
>>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar
[115/156] Installing ca-certificates-0: 100% |   2.0 MiB/s |   2.4 MiB |  00m01s
>>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.
>>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noa
[116/156] Installing krb5-libs-0:1.21.3 100% | 179.7 MiB/s |   2.3 MiB |  00m00s
[117/156] Installing libarchive-0:3.7.4 100% | 243.3 MiB/s | 996.4 KiB |  00m00s
[118/156] Installing libtirpc-0:1.3.5-0 100% | 105.3 MiB/s | 215.6 KiB |  00m00s
[119/156] Installing gzip-0:1.13-2.fc41 100% |  96.1 MiB/s | 393.6 KiB |  00m00s
[120/156] Installing authselect-libs-0: 100% |  90.8 MiB/s | 836.4 KiB |  00m00s
[121/156] Installing cracklib-0:2.9.11- 100% |  34.5 MiB/s | 247.1 KiB |  00m00s
[122/156] Installing libpwquality-0:1.4 100% |  51.6 MiB/s | 423.0 KiB |  00m00s
[123/156] Installing libnsl2-0:2.0.1-2. 100% |  56.9 MiB/s |  58.3 KiB |  00m00s
[124/156] Installing pam-0:1.6.1-4.fc41 100% |  75.2 MiB/s |   1.7 MiB |  00m00s
[125/156] Installing libssh-0:0.10.6-6. 100% | 178.8 MiB/s | 549.4 KiB |  00m00s
[126/156] Installing rpm-sequoia-0:1.7. 100% | 291.8 MiB/s |   2.6 MiB |  00m00s
[127/156] Installing rpm-libs-0:4.19.92 100% | 246.9 MiB/s | 758.4 KiB |  00m00s
[128/156] Installing rpm-build-libs-0:4 100% | 205.3 MiB/s | 210.3 KiB |  00m00s
[129/156] Installing libevent-0:2.1.12- 100% | 233.4 MiB/s | 955.9 KiB |  00m00s
[130/156] Installing xxhash-libs-0:0.8. 100% | 114.5 MiB/s | 117.3 KiB |  00m00s
[131/156] Installing libbrotli-0:1.1.0- 100% | 210.4 MiB/s | 861.8 KiB |  00m00s
[132/156] Installing libnghttp2-0:1.62. 100% | 170.5 MiB/s | 174.6 KiB |  00m00s
[133/156] Installing libtool-ltdl-0:2.4 100% |  68.9 MiB/s |  70.6 KiB |  00m00s
[134/156] Installing openldap-0:2.6.8-5 100% | 166.4 MiB/s | 681.5 KiB |  00m00s
[135/156] Installing libcurl-0:8.9.0-1. 100% | 206.8 MiB/s | 847.2 KiB |  00m00s
[136/156] Installing elfutils-debuginfo 100% |  28.0 MiB/s |  57.3 KiB |  00m00s
[137/156] Installing binutils-0:2.42.50 100% | 266.7 MiB/s |  25.3 MiB |  00m00s
>>> Running post-install scriptlet: binutils-0:2.42.50-20.fc41.i686
>>> Stop post-install scriptlet: binutils-0:2.42.50-20.fc41.i686
[138/156] Installing elfutils-0:0.191-8 100% | 230.9 MiB/s |   2.5 MiB |  00m00s
[139/156] Installing gdb-minimal-0:14.2 100% | 311.5 MiB/s |  13.4 MiB |  00m00s
[140/156] Installing debugedit-0:5.0-17 100% |  95.5 MiB/s | 195.6 KiB |  00m00s
[141/156] Installing curl-0:8.9.0-1.fc4 100% |  35.4 MiB/s | 798.2 KiB |  00m00s
>>> Running pre-install scriptlet: rpm-0:4.19.92-5.fc41.i686
>>> Stop pre-install scriptlet: rpm-0:4.19.92-5.fc41.i686
[142/156] Installing rpm-0:4.19.92-5.fc 100% |  91.6 MiB/s |   2.5 MiB |  00m00s
[143/156] Installing efi-srpm-macros-0: 100% |  40.2 MiB/s |  41.2 KiB |  00m00s
[144/156] Installing lua-srpm-macros-0: 100% |   1.9 MiB/s |   1.9 KiB |  00m00s
[145/156] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[146/156] Installing fonts-srpm-macros- 100% |  55.7 MiB/s |  57.0 KiB |  00m00s
[147/156] Installing forge-srpm-macros- 100% |  39.4 MiB/s |  40.3 KiB |  00m00s
[148/156] Installing go-srpm-macros-0:3 100% |  60.5 MiB/s |  62.0 KiB |  00m00s
[149/156] Installing python-srpm-macros 100% |  50.9 MiB/s |  52.2 KiB |  00m00s
[150/156] Installing redhat-rpm-config- 100% |  61.9 MiB/s | 190.1 KiB |  00m00s
[151/156] Installing rpm-build-0:4.19.9 100% |  43.7 MiB/s | 179.0 KiB |  00m00s
[152/156] Installing pyproject-srpm-mac 100% |   2.4 MiB/s |   2.5 KiB |  00m00s
[153/156] Installing util-linux-0:2.40. 100% |  80.2 MiB/s |   3.5 MiB |  00m00s
>>> Running post-install scriptlet: util-linux-0:2.40.2-4.fc41.i686
>>> Stop post-install scriptlet: util-linux-0:2.40.2-4.fc41.i686
[154/156] Installing authselect-0:1.5.0 100% |  40.3 MiB/s | 165.0 KiB |  00m00s
[155/156] Installing which-0:2.21-42.fc 100% |  79.2 MiB/s |  81.1 KiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[156/156] Installing info-0:7.1-3.fc41. 100% | 226.5 KiB/s | 360.8 KiB |  00m02s
>>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.i686
>>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.i686
>>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f
>>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41
>>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.i686
>>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.i686
>>> Running post-transaction scriptlet: rpm-0:4.19.92-5.fc41.i686
>>> Stop post-transaction scriptlet: rpm-0:4.19.92-5.fc41.i686
>>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-35.fc41.i686
>>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-35.fc41.i686
>>> Running trigger-install scriptlet: info-0:7.1-3.fc41.i686
>>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.i686
Complete!
Warning: skipped PGP checks for 154 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.3.5-1.fc41.i686
alternatives-1.28-3.fc41.i686
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.0.1-4.fc41.i686
authselect-1.5.0-7.fc41.i686
authselect-libs-1.5.0-7.fc41.i686
basesystem-11-21.fc41.noarch
bash-5.2.26-4.fc41.i686
binutils-2.42.50-20.fc41.i686
build-reproducibility-srpm-macros-0.3.5-1.fc41.noarch
bzip2-1.0.8-19.fc41.i686
bzip2-libs-1.0.8-19.fc41.i686
ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch
coreutils-9.5-7.fc41.i686
coreutils-common-9.5-7.fc41.i686
cpio-2.15-2.fc41.i686
cracklib-2.9.11-6.fc41.i686
crypto-policies-20240717-2.git154fd4e.fc41.noarch
curl-8.9.0-1.fc41.i686
cyrus-sasl-lib-2.1.28-27.fc41.i686
debugedit-5.0-17.fc41.i686
diffutils-3.10-7.fc41.i686
dwz-0.15-7.fc41.i686
ed-1.20.2-2.fc41.i686
efi-srpm-macros-5-12.fc41.noarch
elfutils-0.191-8.fc41.i686
elfutils-debuginfod-client-0.191-8.fc41.i686
elfutils-default-yama-scope-0.191-8.fc41.noarch
elfutils-libelf-0.191-8.fc41.i686
elfutils-libs-0.191-8.fc41.i686
fedora-gpg-keys-41-0.2.noarch
fedora-release-41-0.16.noarch
fedora-release-common-41-0.16.noarch
fedora-release-identity-basic-41-0.16.noarch
fedora-repos-41-0.2.noarch
fedora-repos-rawhide-41-0.2.noarch
file-5.45-7.fc41.i686
file-libs-5.45-7.fc41.i686
filesystem-3.18-23.fc41.i686
findutils-4.10.0-4.fc41.i686
fonts-srpm-macros-2.0.5-17.fc41.noarch
forge-srpm-macros-0.3.1-2.fc41.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.i686
gdb-minimal-14.2-15.fc41.i686
gdbm-1.23-7.fc41.i686
gdbm-libs-1.23-7.fc41.i686
ghc-srpm-macros-1.9.1-2.fc41.noarch
glibc-2.39.9000-35.fc41.i686
glibc-common-2.39.9000-35.fc41.i686
glibc-gconv-extra-2.39.9000-35.fc41.i686
glibc-minimal-langpack-2.39.9000-35.fc41.i686
gmp-6.3.0-2.fc41.i686
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.6.0-3.fc41.noarch
grep-3.11-9.fc41.i686
gzip-1.13-2.fc41.i686
info-7.1-3.fc41.i686
jansson-2.13.1-10.fc41.i686
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc41.i686
krb5-libs-1.21.3-2.fc41.i686
libacl-2.3.2-2.fc41.i686
libarchive-3.7.4-3.fc41.i686
libattr-2.5.2-4.fc41.i686
libblkid-2.40.2-4.fc41.i686
libbrotli-1.1.0-5.fc41.i686
libcap-2.70-4.fc41.i686
libcap-ng-0.8.5-3.fc41.i686
libcom_err-1.47.1-3.fc41.i686
libcurl-8.9.0-1.fc41.i686
libeconf-0.6.2-3.fc41.i686
libevent-2.1.12-14.fc41.i686
libfdisk-2.40.2-4.fc41.i686
libffi-3.4.6-2.fc41.i686
libgcc-14.1.1-7.fc41.i686
libgomp-14.1.1-7.fc41.i686
libidn2-2.3.7-2.fc41.i686
libmount-2.40.2-4.fc41.i686
libnghttp2-1.62.1-2.fc41.i686
libnsl2-2.0.1-2.fc41.i686
libpkgconf-2.1.1-2.fc41.i686
libpsl-0.21.5-4.fc41.i686
libpwquality-1.4.5-11.fc41.i686
libselinux-3.7-5.fc41.i686
libsemanage-3.7-2.fc41.i686
libsepol-3.7-2.fc41.i686
libsmartcols-2.40.2-4.fc41.i686
libssh-0.10.6-6.fc41.i686
libssh-config-0.10.6-6.fc41.noarch
libstdc++-14.1.1-7.fc41.i686
libtasn1-4.19.0-9.fc41.i686
libtirpc-1.3.5-0.fc41.i686
libtool-ltdl-2.4.7-12.fc41.i686
libunistring-1.1-8.fc41.i686
libutempter-1.2.1-15.fc41.i686
libuuid-2.40.2-4.fc41.i686
libverto-0.3.2-9.fc41.i686
libxcrypt-4.4.36-7.fc41.i686
libxml2-2.12.8-2.fc41.i686
libzstd-1.5.6-2.fc41.i686
lua-libs-5.4.6-6.fc41.i686
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc41.i686
mpfr-4.2.1-5.fc41.i686
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.i686
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.8-5.fc41.i686
openssl-libs-3.2.2-5.fc41.i686
p11-kit-0.25.5-3.fc41.i686
p11-kit-trust-0.25.5-3.fc41.i686
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.6.1-4.fc41.i686
pam-libs-1.6.1-4.fc41.i686
patch-2.7.6-25.fc41.i686
pcre2-10.44-1.fc41.1.i686
pcre2-syntax-10.44-1.fc41.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.1.1-2.fc41.i686
pkgconf-m4-2.1.1-2.fc41.noarch
pkgconf-pkg-config-2.1.1-2.fc41.i686
popt-1.19-7.fc41.i686
publicsuffix-list-dafsa-20240107-4.fc41.noarch
pyproject-srpm-macros-1.14.0-1.fc41.noarch
python-srpm-macros-3.13-3.fc41.noarch
qt5-srpm-macros-5.15.14-3.fc41.noarch
qt6-srpm-macros-6.7.2-3.fc41.noarch
readline-8.2-9.fc41.i686
redhat-rpm-config-293-1.fc41.noarch
rpm-4.19.92-5.fc41.i686
rpm-build-4.19.92-5.fc41.i686
rpm-build-libs-4.19.92-5.fc41.i686
rpm-libs-4.19.92-5.fc41.i686
rpm-sequoia-1.7.0-2.fc41.i686
rust-srpm-macros-26.3-1.fc41.noarch
sed-4.9-3.fc41.i686
setup-2.15.0-5.fc41.noarch
shadow-utils-4.15.1-9.fc41.i686
sqlite-libs-3.46.0-3.fc41.i686
systemd-libs-256.4-1.fc41.i686
tar-1.35-4.fc41.i686
unzip-6.0-64.fc41.i686
util-linux-2.40.2-4.fc41.i686
util-linux-core-2.40.2-4.fc41.i686
which-2.21-42.fc41.i686
xxhash-libs-0.8.2-3.fc41.i686
xz-5.6.2-2.fc41.i686
xz-libs-5.6.2-2.fc41.i686
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-41.fc41.i686
zlib-ng-compat-2.1.7-2.fc41.i686
zstd-1.5.6-2.fc41.i686
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1721952000
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-21.fc41.src.rpm
Finish: rpmbuild -bs
cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-i686-1721949972.732496/root/var/log’: No such file or directory
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1721949972.732496/root/var/log/dnf5.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-s4t9ppzg/mmseq/mmseq.spec) Config(child) 0 minutes 39 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-21.fc41.src.rpm)  Config(fedora-rawhide-i686)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1721949972.732496/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1721949972.732496/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1721949972.732496/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.92-5.fc41.x86_64
  rpm-sequoia-1.7.0-2.fc41.x86_64
  dnf5-5.2.5.0-1.fc41.x86_64
  dnf5-plugins-5.2.5.0-1.fc41.x86_64
Finish: chroot init
Start: build phase for mmseq-1.0.11-21.fc41.src.rpm
Start: build setup for mmseq-1.0.11-21.fc41.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1721952000
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-21.fc41.src.rpm
Updating and loading repositories:
 Additional repo http_kojipkgs_fedorapr 100% |  69.6 KiB/s |   3.8 KiB |  00m00s
 local                                  100% | 105.9 KiB/s |   3.5 KiB |  00m00s
 Copr repository                        100% |  34.2 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package                    Arch   Version              Repository                                                         Size
Installing:
 armadillo-devel           i686   12.8.1-3.fc41        copr_base                                                       7.3 MiB
 boost-devel               i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 143.0 MiB
 flexiblas-devel           i686   3.4.4-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 gcc-c++                   i686   14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  38.9 MiB
 gsl-devel                 i686   2.7.1-9.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 htslib-devel              i686   1.15.1-6.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 411.0 KiB
 make                      i686   1:4.4.1-8.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 perl-generators           noarch 1.16-6.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  21.8 KiB
 zlib-ng-compat-devel      i686   2.1.7-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.7 KiB
Installing dependencies:
 SuperLU                   i686   6.0.1-6.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 521.7 KiB
 SuperLU-devel             i686   6.0.1-6.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 102.2 KiB
 annobin-docs              noarch 12.62-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  96.5 KiB
 annobin-plugin-gcc        i686   12.62-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 976.4 KiB
 armadillo                 i686   12.8.1-3.fc41        copr_base                                                     130.1 KiB
 arpack                    i686   3.9.1-4.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 328.6 KiB
 arpack-devel              i686   3.9.1-4.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  24.1 KiB
 autoconf                  noarch 2.72-3.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.8 MiB
 automake                  noarch 1.16.5-17.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 boost                     i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 KiB
 boost-atomic              i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  16.1 KiB
 boost-chrono              i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  36.8 KiB
 boost-container           i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  68.8 KiB
 boost-context             i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.8 KiB
 boost-contract            i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 102.4 KiB
 boost-coroutine           i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  20.4 KiB
 boost-date-time           i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.6 KiB
 boost-fiber               i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  78.0 KiB
 boost-filesystem          i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146.8 KiB
 boost-graph               i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 341.2 KiB
 boost-iostreams           i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  90.0 KiB
 boost-json                i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 348.5 KiB
 boost-locale              i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 617.4 KiB
 boost-log                 i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 boost-math                i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 658.8 KiB
 boost-nowide              i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  24.2 KiB
 boost-numpy3              i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  56.9 KiB
 boost-program-options     i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 268.1 KiB
 boost-python3             i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 248.2 KiB
 boost-random              i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.9 KiB
 boost-regex               i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 262.3 KiB
 boost-serialization       i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 448.2 KiB
 boost-stacktrace          i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.9 KiB
 boost-system              i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.6 KiB
 boost-test                i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 633.5 KiB
 boost-thread              i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.1 KiB
 boost-timer               i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  24.3 KiB
 boost-type_erasure        i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  53.5 KiB
 boost-wave                i686   1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 646.8 KiB
 cmake-filesystem          i686   3.28.3-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 cpp                       i686   14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.6 MiB
 emacs-filesystem          noarch 1:30.0-3.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 expat                     i686   2.6.2-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 291.3 KiB
 flexiblas                 i686   3.4.4-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  48.5 KiB
 flexiblas-netlib          i686   3.4.4-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.2 MiB
 flexiblas-openblas-openmp i686   3.4.4-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  26.6 KiB
 gcc                       i686   14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101.7 MiB
 gcc-gfortran              i686   14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.7 MiB
 gcc-plugin-annobin        i686   14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.8 KiB
 glibc-devel               i686   2.39.9000-35.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  31.7 KiB
 glibc-headers-x86         noarch 2.39.9000-35.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 MiB
 groff-base                i686   1.23.0-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.8 MiB
 gsl                       i686   2.7.1-9.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.6 MiB
 hdf5                      i686   1.12.1-20.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.8 MiB
 hdf5-devel                i686   1.12.1-20.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.8 MiB
 htslib                    i686   1.15.1-6.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 kernel-headers            i686   6.10.0-64.fc41.1     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.3 MiB
 libaec                    i686   1.1.2-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100.7 KiB
 libaec-devel              i686   1.1.2-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.9 KiB
 libasan                   i686   14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 libatomic                 i686   14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  27.5 KiB
 libb2                     i686   0.98.1-12.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  53.4 KiB
 libgfortran               i686   14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.9 MiB
 libicu                    i686   74.2-2.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.3 MiB
 libicu-devel              i686   74.2-2.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.6 MiB
 libmpc                    i686   1.3.1-6.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 168.0 KiB
 libquadmath               i686   14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 513.2 KiB
 libquadmath-devel         i686   14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  21.8 KiB
 libstdc++-devel           i686   14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  14.9 MiB
 libubsan                  i686   14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 538.6 KiB
 libxcrypt-devel           i686   4.4.36-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  30.3 KiB
 m4                        i686   1.4.19-10.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 596.2 KiB
 metis                     i686   5.1.0.3-6.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 994.4 KiB
 mpdecimal                 i686   2.5.1-16.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 204.1 KiB
 ncurses                   i686   6.5-2.20240629.fc41  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 613.4 KiB
 openblas                  i686   0.3.26-5.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  96.0 KiB
 openblas-openmp           i686   0.3.26-5.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.5 MiB
 perl-AutoLoader           noarch 5.74-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  20.5 KiB
 perl-B                    i686   1.89-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 505.3 KiB
 perl-Carp                 noarch 1.54-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  46.6 KiB
 perl-Class-Struct         noarch 0.68-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  25.4 KiB
 perl-Data-Dumper          i686   2.189-512.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 119.0 KiB
 perl-Digest               noarch 1.20-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.3 KiB
 perl-Digest-MD5           i686   2.59-5.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  59.1 KiB
 perl-DynaLoader           i686   1.56-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  32.1 KiB
 perl-Encode               i686   4:3.21-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.3 MiB
 perl-Errno                i686   1.38-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.4 KiB
 perl-Exporter             noarch 5.78-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  54.3 KiB
 perl-Fcntl                i686   1.18-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  44.3 KiB
 perl-Fedora-VSP           noarch 0.001-35.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.7 KiB
 perl-File-Basename        noarch 2.86-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  14.0 KiB
 perl-File-Compare         noarch 1.100.800-511.fc41   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.6 KiB
 perl-File-Copy            noarch 2.41-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.6 KiB
 perl-File-Find            noarch 1.44-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  41.9 KiB
 perl-File-Path            noarch 2.18-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  63.5 KiB
 perl-File-Temp            noarch 1:0.231.100-511.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 162.3 KiB
 perl-File-stat            noarch 1.14-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.5 KiB
 perl-FileHandle           noarch 2.05-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.3 KiB
 perl-Getopt-Long          noarch 1:2.58-2.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.5 KiB
 perl-Getopt-Std           noarch 1.14-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.2 KiB
 perl-HTTP-Tiny            noarch 0.088-512.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 152.2 KiB
 perl-IO                   i686   1.55-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146.4 KiB
 perl-IO-Socket-IP         noarch 0.42-512.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  98.7 KiB
 perl-IO-Socket-SSL        noarch 2.088-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 701.1 KiB
 perl-IPC-Open3            noarch 1.22-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.5 KiB
 perl-MIME-Base64          i686   3.16-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  45.4 KiB
 perl-Mozilla-CA           noarch 20240313-2.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.5 KiB
 perl-Net-SSLeay           i686   1.94-7.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 perl-POSIX                i686   2.20-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 234.4 KiB
 perl-PathTools            i686   3.91-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 175.3 KiB
 perl-Pod-Escapes          noarch 1:1.07-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  24.9 KiB
 perl-Pod-Perldoc          noarch 3.28.01-512.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 163.7 KiB
 perl-Pod-Simple           noarch 1:3.45-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 560.9 KiB
 perl-Pod-Usage            noarch 4:2.03-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  84.8 KiB
 perl-Scalar-List-Utils    i686   5:1.63-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 153.0 KiB
 perl-SelectSaver          noarch 1.02-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 perl-Socket               i686   4:2.038-511.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 115.3 KiB
 perl-Storable             i686   1:3.32-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 231.7 KiB
 perl-Symbol               noarch 1.09-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.8 KiB
 perl-Term-ANSIColor       noarch 5.01-512.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  97.5 KiB
 perl-Term-Cap             noarch 1.18-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.3 KiB
 perl-Text-ParseWords      noarch 3.31-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.6 KiB
 perl-Text-Tabs+Wrap       noarch 2024.001-511.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.6 KiB
 perl-Thread-Queue         noarch 3.14-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.9 KiB
 perl-Time-Local           noarch 2:1.350-511.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  69.0 KiB
 perl-URI                  noarch 5.28-2.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 240.7 KiB
 perl-base                 noarch 2.27-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.5 KiB
 perl-constant             noarch 1.33-512.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  26.2 KiB
 perl-if                   noarch 0.61.000-511.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.8 KiB
 perl-interpreter          i686   4:5.40.0-511.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121.5 KiB
 perl-libnet               noarch 3.15-512.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 289.4 KiB
 perl-libs                 i686   4:5.40.0-511.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  10.1 MiB
 perl-locale               noarch 1.12-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.5 KiB
 perl-macros               noarch 4:5.40.0-511.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.5 KiB
 perl-mro                  i686   1.29-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.9 KiB
 perl-overload             noarch 1.37-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  71.5 KiB
 perl-overloading          noarch 0.02-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.8 KiB
 perl-parent               noarch 1:0.241-511.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.8 KiB
 perl-podlators            noarch 1:6.0.2-2.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 317.5 KiB
 perl-threads              i686   1:2.40-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 114.5 KiB
 perl-threads-shared       i686   1.69-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  87.0 KiB
 perl-vars                 noarch 1.05-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.9 KiB
 python-pip-wheel          noarch 24.1.1-2.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 python3                   i686   3.13.0~b4-2.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  30.9 KiB
 python3-libs              i686   3.13.0~b4-2.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.1 MiB
 python3-numpy             i686   1:1.26.4-8.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  36.6 MiB
 tzdata                    noarch 2024a-9.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB

Transaction Summary:
 Installing:      156 packages

Total size of inbound packages is 155 MiB. Need to download 155 MiB.
After this operation 613 MiB will be used (install 613 MiB, remove 0 B).
[  1/156] flexiblas-devel-0:3.4.4-2.fc4 100% |   1.3 MiB/s | 106.3 KiB |  00m00s
[  2/156] armadillo-devel-0:12.8.1-3.fc 100% |  11.6 MiB/s |   2.0 MiB |  00m00s
[  3/156] gsl-devel-0:2.7.1-9.fc41.i686 100% |   6.6 MiB/s | 609.4 KiB |  00m00s
[  4/156] boost-devel-0:1.83.0-8.fc41.i 100% |  39.5 MiB/s |  11.7 MiB |  00m00s
[  5/156] htslib-devel-0:1.15.1-6.fc41. 100% |   2.1 MiB/s |  99.0 KiB |  00m00s
[  6/156] make-1:4.4.1-8.fc41.i686      100% |  19.8 MiB/s | 589.1 KiB |  00m00s
[  7/156] perl-generators-0:1.16-6.fc41 100% | 822.8 KiB/s |  16.5 KiB |  00m00s
[  8/156] armadillo-0:12.8.1-3.fc41.i68 100% |   4.1 MiB/s |  37.7 KiB |  00m00s
[  9/156] zlib-ng-compat-devel-0:2.1.7- 100% |   2.2 MiB/s |  38.1 KiB |  00m00s
[ 10/156] SuperLU-devel-0:6.0.1-6.fc41. 100% |   1.3 MiB/s |  27.2 KiB |  00m00s
[ 11/156] arpack-devel-0:3.9.1-4.fc41.i 100% | 522.4 KiB/s |  13.6 KiB |  00m00s
[ 12/156] hdf5-devel-0:1.12.1-20.fc41.i 100% |  21.0 MiB/s |   1.3 MiB |  00m00s
[ 13/156] libstdc++-devel-0:14.1.1-7.fc 100% |  43.9 MiB/s |   2.6 MiB |  00m00s
[ 14/156] SuperLU-0:6.0.1-6.fc41.i686   100% |   9.1 MiB/s | 204.1 KiB |  00m00s
[ 15/156] arpack-0:3.9.1-4.fc41.i686    100% |   6.0 MiB/s | 123.4 KiB |  00m00s
[ 16/156] cmake-filesystem-0:3.28.3-7.f 100% | 909.4 KiB/s |  18.2 KiB |  00m00s
[ 17/156] perl-Fedora-VSP-0:0.001-35.fc 100% |   1.1 MiB/s |  23.0 KiB |  00m00s
[ 18/156] perl-File-Basename-0:2.86-511 100% | 901.2 KiB/s |  17.1 KiB |  00m00s
[ 19/156] perl-interpreter-4:5.40.0-511 100% |   3.5 MiB/s |  72.3 KiB |  00m00s
[ 20/156] flexiblas-netlib-0:3.4.4-2.fc 100% |  32.5 MiB/s |   3.1 MiB |  00m00s
[ 21/156] perl-macros-4:5.40.0-511.fc41 100% | 683.0 KiB/s |  12.3 KiB |  00m00s
[ 22/156] perl-Carp-0:1.54-511.fc41.noa 100% |   1.3 MiB/s |  28.9 KiB |  00m00s
[ 23/156] perl-Exporter-0:5.78-511.fc41 100% |   1.6 MiB/s |  30.9 KiB |  00m00s
[ 24/156] htslib-0:1.15.1-6.fc41.i686   100% |   9.8 MiB/s | 532.4 KiB |  00m00s
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[ 33/156] libmpc-0:1.3.1-6.fc41.i686    100% |   3.4 MiB/s |  77.7 KiB |  00m00s
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[ 60/156] cpp-0:14.1.1-7.fc41.i686      100% |  26.4 MiB/s |  12.0 MiB |  00m00s
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[ 66/156] boost-python3-0:1.83.0-8.fc41 100% |   5.3 MiB/s | 102.6 KiB |  00m00s
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[ 69/156] boost-serialization-0:1.83.0- 100% |   7.5 MiB/s | 145.5 KiB |  00m00s
[ 70/156] boost-stacktrace-0:1.83.0-8.f 100% |   1.6 MiB/s |  29.9 KiB |  00m00s
[ 71/156] boost-system-0:1.83.0-8.fc41. 100% | 808.3 KiB/s |  14.5 KiB |  00m00s
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[ 73/156] boost-test-0:1.83.0-8.fc41.i6 100% |   8.9 MiB/s | 255.1 KiB |  00m00s
[ 74/156] boost-timer-0:1.83.0-8.fc41.i 100% |   1.2 MiB/s |  21.5 KiB |  00m00s
[ 75/156] boost-type_erasure-0:1.83.0-8 100% |   1.6 MiB/s |  34.3 KiB |  00m00s
[ 76/156] boost-wave-0:1.83.0-8.fc41.i6 100% |   9.0 MiB/s | 212.7 KiB |  00m00s
[ 77/156] autoconf-0:2.72-3.fc41.noarch 100% |  24.2 MiB/s | 817.0 KiB |  00m00s
[ 78/156] perl-Class-Struct-0:0.68-511. 100% |   1.0 MiB/s |  22.0 KiB |  00m00s
[ 79/156] perl-Errno-0:1.38-511.fc41.i6 100% | 782.3 KiB/s |  14.9 KiB |  00m00s
[ 80/156] perl-File-Path-0:2.18-511.fc4 100% |   1.7 MiB/s |  35.3 KiB |  00m00s
[ 81/156] perl-File-stat-0:1.14-511.fc4 100% | 944.8 KiB/s |  17.0 KiB |  00m00s
[ 82/156] perl-Getopt-Long-1:2.58-2.fc4 100% |   3.1 MiB/s |  63.9 KiB |  00m00s
[ 83/156] perl-IO-0:1.55-511.fc41.i686  100% |   4.0 MiB/s |  78.5 KiB |  00m00s
[ 84/156] perl-PathTools-0:3.91-511.fc4 100% |   4.3 MiB/s |  83.7 KiB |  00m00s
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[ 88/156] emacs-filesystem-1:30.0-3.fc4 100% | 396.8 KiB/s |   7.1 KiB |  00m00s
[ 89/156] m4-0:1.4.19-10.fc41.i686      100% |  10.2 MiB/s | 303.4 KiB |  00m00s
[ 90/156] perl-Data-Dumper-0:2.189-512. 100% |   2.5 MiB/s |  58.2 KiB |  00m00s
[ 91/156] perl-File-Compare-0:1.100.800 100% | 777.2 KiB/s |  13.2 KiB |  00m00s
[ 92/156] perl-File-Copy-0:2.41-511.fc4 100% |   1.1 MiB/s |  20.1 KiB |  00m00s
[ 93/156] perl-File-Find-0:1.44-511.fc4 100% |   1.3 MiB/s |  25.3 KiB |  00m00s
[ 94/156] perl-File-Temp-1:0.231.100-51 100% |   2.7 MiB/s |  59.1 KiB |  00m00s
[ 95/156] perl-POSIX-0:2.20-511.fc41.i6 100% |   4.9 MiB/s | 100.7 KiB |  00m00s
[ 96/156] perl-Text-ParseWords-0:3.31-5 100% | 828.8 KiB/s |  16.6 KiB |  00m00s
[ 97/156] annobin-docs-0:12.62-2.fc41.n 100% |   4.6 MiB/s |  90.4 KiB |  00m00s
[ 98/156] metis-0:5.1.0.3-6.fc41.i686   100% |  19.6 MiB/s | 581.8 KiB |  00m00s
[ 99/156] perl-overload-0:1.37-511.fc41 100% |   2.2 MiB/s |  45.5 KiB |  00m00s
[100/156] perl-Scalar-List-Utils-5:1.63 100% |   3.7 MiB/s |  75.5 KiB |  00m00s
[101/156] perl-mro-0:1.29-511.fc41.i686 100% |   1.7 MiB/s |  30.2 KiB |  00m00s
[102/156] perl-overloading-0:0.02-511.f 100% | 714.7 KiB/s |  12.9 KiB |  00m00s
[103/156] perl-DynaLoader-0:1.56-511.fc 100% |   1.3 MiB/s |  25.9 KiB |  00m00s
[104/156] perl-threads-shared-0:1.69-51 100% |   2.3 MiB/s |  45.7 KiB |  00m00s
[105/156] gcc-0:14.1.1-7.fc41.i686      100% |  32.6 MiB/s |  36.8 MiB |  00m01s
[106/156] perl-Fcntl-0:1.18-511.fc41.i6 100% | 534.2 KiB/s |  29.9 KiB |  00m00s
[107/156] perl-Encode-4:3.21-511.fc41.i 100% |  11.9 MiB/s |   1.0 MiB |  00m00s
[108/156] perl-locale-0:1.12-511.fc41.n 100% | 714.7 KiB/s |  13.6 KiB |  00m00s
[109/156] perl-SelectSaver-0:1.02-511.f 100% | 649.1 KiB/s |  11.7 KiB |  00m00s
[110/156] perl-Socket-4:2.038-511.fc41. 100% |   2.9 MiB/s |  55.7 KiB |  00m00s
[111/156] perl-Symbol-0:1.09-511.fc41.n 100% | 832.7 KiB/s |  14.2 KiB |  00m00s
[112/156] perl-Pod-Usage-4:2.03-511.fc4 100% |   2.1 MiB/s |  40.0 KiB |  00m00s
[113/156] perl-base-0:2.27-511.fc41.noa 100% | 951.3 KiB/s |  16.2 KiB |  00m00s
[114/156] perl-parent-1:0.241-511.fc41. 100% | 824.7 KiB/s |  14.8 KiB |  00m00s
[115/156] perl-vars-0:1.05-511.fc41.noa 100% | 762.2 KiB/s |  13.0 KiB |  00m00s
[116/156] perl-Getopt-Std-0:1.14-511.fc 100% | 869.1 KiB/s |  15.6 KiB |  00m00s
[117/156] perl-MIME-Base64-0:3.16-511.f 100% |   1.6 MiB/s |  30.4 KiB |  00m00s
[118/156] perl-Storable-1:3.32-511.fc41 100% |   5.2 MiB/s | 101.2 KiB |  00m00s
[119/156] perl-B-0:1.89-511.fc41.i686   100% |   9.3 MiB/s | 180.9 KiB |  00m00s
[120/156] perl-if-0:0.61.000-511.fc41.n 100% | 821.3 KiB/s |  14.0 KiB |  00m00s
[121/156] glibc-headers-x86-0:2.39.9000 100% |  13.5 MiB/s | 554.2 KiB |  00m00s
[122/156] kernel-headers-0:6.10.0-64.fc 100% |  31.6 MiB/s |   1.5 MiB |  00m00s
[123/156] libxcrypt-devel-0:4.4.36-7.fc 100% |   1.5 MiB/s |  28.8 KiB |  00m00s
[124/156] python3-0:3.13.0~b4-2.fc41.i6 100% |   1.4 MiB/s |  26.7 KiB |  00m00s
[125/156] openblas-openmp-0:0.3.26-5.fc 100% |  42.1 MiB/s |   4.0 MiB |  00m00s
[126/156] python3-libs-0:3.13.0~b4-2.fc 100% |  46.9 MiB/s |   8.9 MiB |  00m00s
[127/156] python3-numpy-1:1.26.4-8.fc41 100% |  25.1 MiB/s |   6.9 MiB |  00m00s
[128/156] perl-Pod-Perldoc-0:3.28.01-51 100% |   2.7 MiB/s |  80.5 KiB |  00m00s
[129/156] perl-podlators-1:6.0.2-2.fc41 100% |   5.8 MiB/s | 124.8 KiB |  00m00s
[130/156] libicu-0:74.2-2.fc41.i686     100% |  25.8 MiB/s |  10.6 MiB |  00m00s
[131/156] perl-HTTP-Tiny-0:0.088-512.fc 100% |   1.8 MiB/s |  55.8 KiB |  00m00s
[132/156] perl-IPC-Open3-0:1.22-511.fc4 100% |   1.1 MiB/s |  21.8 KiB |  00m00s
[133/156] perl-Pod-Simple-1:3.45-511.fc 100% |   9.3 MiB/s | 209.6 KiB |  00m00s
[134/156] groff-base-0:1.23.0-7.fc41.i6 100% |  16.8 MiB/s |   1.1 MiB |  00m00s
[135/156] perl-IO-Socket-SSL-0:2.088-2. 100% |  11.2 MiB/s | 230.4 KiB |  00m00s
[136/156] perl-Mozilla-CA-0:20240313-2. 100% | 785.4 KiB/s |  14.1 KiB |  00m00s
[137/156] openblas-0:0.3.26-5.fc41.i686 100% |   2.1 MiB/s |  38.7 KiB |  00m00s
[138/156] perl-Net-SSLeay-0:1.94-7.fc41 100% |   9.9 MiB/s | 374.1 KiB |  00m00s
[139/156] perl-Time-Local-2:1.350-511.f 100% |   1.7 MiB/s |  34.5 KiB |  00m00s
[140/156] expat-0:2.6.2-2.fc41.i686     100% |   6.1 MiB/s | 117.9 KiB |  00m00s
[141/156] mpdecimal-0:2.5.1-16.fc41.i68 100% |   4.7 MiB/s |  91.9 KiB |  00m00s
[142/156] libb2-0:0.98.1-12.fc41.i686   100% |   1.5 MiB/s |  28.8 KiB |  00m00s
[143/156] perl-Term-ANSIColor-0:5.01-51 100% |   2.1 MiB/s |  47.7 KiB |  00m00s
[144/156] tzdata-0:2024a-9.fc41.noarch  100% |  14.5 MiB/s | 430.6 KiB |  00m00s
[145/156] perl-Term-Cap-0:1.18-511.fc41 100% |   1.1 MiB/s |  22.1 KiB |  00m00s
[146/156] python-pip-wheel-0:24.1.1-2.f 100% |  23.2 MiB/s |   1.2 MiB |  00m00s
[147/156] ncurses-0:6.5-2.20240629.fc41 100% |  17.9 MiB/s | 421.3 KiB |  00m00s
[148/156] perl-Pod-Escapes-1:1.07-511.f 100% | 943.5 KiB/s |  19.8 KiB |  00m00s
[149/156] perl-Text-Tabs+Wrap-0:2024.00 100% |   1.1 MiB/s |  21.9 KiB |  00m00s
[150/156] perl-AutoLoader-0:5.74-511.fc 100% |   1.0 MiB/s |  21.2 KiB |  00m00s
[151/156] perl-IO-Socket-IP-0:0.42-512. 100% |   2.1 MiB/s |  41.8 KiB |  00m00s
[152/156] perl-URI-0:5.28-2.fc41.noarch 100% |   5.9 MiB/s | 120.1 KiB |  00m00s
[153/156] perl-libnet-0:3.15-512.fc41.n 100% |   6.0 MiB/s | 123.0 KiB |  00m00s
[154/156] perl-Digest-MD5-0:2.59-5.fc41 100% |   1.9 MiB/s |  36.3 KiB |  00m00s
[155/156] perl-FileHandle-0:2.05-511.fc 100% | 858.8 KiB/s |  15.5 KiB |  00m00s
[156/156] perl-Digest-0:1.20-511.fc41.n 100% |   1.2 MiB/s |  24.9 KiB |  00m00s
--------------------------------------------------------------------------------
[156/156] Total                         100% |  59.0 MiB/s | 154.8 MiB |  00m03s
Running transaction
[  1/158] Verify package files          100% | 301.0   B/s | 156.0   B |  00m01s
[  2/158] Prepare transaction           100% | 663.0   B/s | 156.0   B |  00m00s
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[  9/158] Installing libgfortran-0:14.1 100% | 293.9 MiB/s |   2.9 MiB |  00m00s
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[ 14/158] Installing boost-filesystem-0 100% |  72.2 MiB/s | 147.8 KiB |  00m00s
[ 15/158] Installing libquadmath-0:14.1 100% | 251.2 MiB/s | 514.5 KiB |  00m00s
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[ 21/158] Installing tzdata-0:2024a-9.f 100% |  28.5 MiB/s |   1.9 MiB |  00m00s
[ 22/158] Installing python-pip-wheel-0 100% | 416.5 MiB/s |   1.2 MiB |  00m00s
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[ 25/158] Installing glibc-headers-x86- 100% |  99.4 MiB/s |   2.3 MiB |  00m00s
[ 26/158] Installing libxcrypt-devel-0: 100% |  31.8 MiB/s |  32.6 KiB |  00m00s
[ 27/158] Installing glibc-devel-0:2.39 100% |  17.2 MiB/s |  35.2 KiB |  00m00s
[ 28/158] Installing annobin-docs-0:12. 100% |  95.4 MiB/s |  97.7 KiB |  00m00s
[ 29/158] Installing emacs-filesystem-1 100% |   0.0   B/s | 544.0   B |  00m00s
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[ 31/158] Installing flexiblas-0:3.4.4- 100% |  48.5 MiB/s |  49.7 KiB |  00m00s
[ 32/158] Installing flexiblas-openblas 100% |  26.8 MiB/s |  27.5 KiB |  00m00s
[ 33/158] Installing flexiblas-netlib-0 100% | 330.1 MiB/s |  11.2 MiB |  00m00s
[ 34/158] Installing arpack-0:3.9.1-4.f 100% | 161.2 MiB/s | 330.1 KiB |  00m00s
[ 35/158] Installing arpack-devel-0:3.9 100% |  25.8 MiB/s |  26.5 KiB |  00m00s
[ 36/158] Installing flexiblas-devel-0: 100% | 390.0 MiB/s |   2.3 MiB |  00m00s
[ 37/158] Installing hdf5-0:1.12.1-20.f 100% | 283.4 MiB/s |   8.8 MiB |  00m00s
[ 38/158] Installing boost-json-0:1.83. 100% | 170.6 MiB/s | 349.4 KiB |  00m00s
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>>> Running pre-install scriptlet: groff-base-0:1.23.0-7.fc41.i686
>>> Stop pre-install scriptlet: groff-base-0:1.23.0-7.fc41.i686
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>>> Running post-install scriptlet: groff-base-0:1.23.0-7.fc41.i686
>>> Stop post-install scriptlet: groff-base-0:1.23.0-7.fc41.i686
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[150/158] Installing gcc-0:14.1.1-7.fc4 100% | 318.0 MiB/s | 101.8 MiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
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[156/158] Installing gcc-c++-0:14.1.1-7 100% | 306.1 MiB/s |  38.9 MiB |  00m00s
[157/158] Installing annobin-plugin-gcc 100% |  38.2 MiB/s | 978.0 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[158/158] Installing gcc-plugin-annobin 100% | 173.2 KiB/s |  57.3 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
>>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-35.fc41.i686
>>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-35.fc41.i686
>>> Running trigger-install scriptlet: info-0:7.1-3.fc41.i686
>>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.i686
Complete!
Warning: skipped PGP checks for 156 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch
Finish: build setup for mmseq-1.0.11-21.fc41.src.rpm
Start: rpmbuild mmseq-1.0.11-21.fc41.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1721952000
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.P80ts1
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.wzryqM
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf mmseq-1.0.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.11
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #2 (mmseq-zlib.patch):
+ echo 'Patch #2 (mmseq-zlib.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
+ rm -f bin/offsetGTF-linux bin/postdiff-linux
+ sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.5GhDpn
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ cd src
+ make -j2 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp 
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection    -c -o fasta.o fasta.c
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -O3 offsetGTF.cpp -o ../bin/offsetGTF
offsetGTF.cpp: In function ‘int main(int, char**)’:
offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  115 |       while(gff_ind < gff_positions[chrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  117 |               pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable ‘curoff’ [-Wunused-variable]
  114 |       int curoff=offset;
      |           ^~~~~~
offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  150 |       while(gff_ind < gff_positions[prevchrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  163 |           pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  177 |     while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
      |           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  235 |     for(int i=5; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  237 |       if(i < tokens.size()-1) {
      |          ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable ‘gff_pos’ [-Wunused-variable]
  108 |   int gff_pos= -1;
      |       ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -O3 t2g_hits.cpp -o ../bin/t2g_hits
t2g_hits.cpp: In function ‘int main(int, char**)’:
t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
   90 |         for(int i=2; i < tokens.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~
t2g_hits.cpp:112:13: warning: ignoring return value of ‘_FIter std::unique(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<__cxx11::basic_string<char>*, vector<__cxx11::basic_string<char> > >]’, declared with attribute ‘nodiscard’ [-Wunused-result]
  112 |       unique(comb.begin(), comb.end());
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
                 from t2g_hits.cpp:27:
/usr/include/c++/14/bits/stl_algo.h:891:5: note: declared here
  891 |     unique(_ForwardIterator __first, _ForwardIterator __last)
      |     ^~~~~~
g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmcollapse.cpp: In function ‘void get_unidentifiable_transcripts(std::string, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, bool>&)’:
mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  158 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  213 |     for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  259 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)’:
mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  400 |   for(int s=0; s < R.n_slices; s++) {
      |                ~~^~~~~~~~~~~~
mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  401 |     for(int t=0; t < candidates.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  402 |       for(int j=1; j < indexes.size(); j++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  414 |     for(int j=1; j < indexes.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  417 |       for(int i=0; i < R.n_cols; i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  426 |   for(int i=0; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  431 |   for(int i=1; i < tset.size(); i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  437 |   for(int i=1; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >)’:
mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  445 |   for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
      |                ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  452 |   for(int c=0; c < candidates.size(); c++) {
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  456 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  464 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  469 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  476 |   for(int i=0; i < toshed.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)’:
mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  486 |     for(int v= 0; v < R.n_rows; v++) {
      |                   ~~^~~~~~~~~~
mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  492 |       for(int i=0; i < u.size(); i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp: In function ‘void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&)’:
mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  519 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  543 |         for(int t=0; t < tokens.size(); t++) {
      |                      ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘int main(int, char**)’:
mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  632 |   for(int i=1; i < basenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  691 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  707 |   for(int i=0; i < candidates.size(); i++) ts.push_back(i);
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  732 |     for(int i=0 ;i < maxcorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  738 |     for(int i=0 ;i < mincorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  802 |         for(int i=0 ;i < maxcorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  808 |         for(int i=0 ;i < mincorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  827 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  852 |       for(int t=0; t < tokens.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  882 |       for(int t=0; t < tokens2.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  934 |     for(int t=0; t < M.n_cols; t++) {
      |                  ~~^~~~~~~~~~
mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  963 |     for(int i=1; i < tokens2.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  976 |       if(MM.size1() < i+1 ) factor1=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  977 |       if(MM.size2() < j+1 ) factor2=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1010 |     for(int t=0; t < ids.size(); t++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1083 |     for(int i=0; i < ids.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1092 |     for(int v = 0; v < M.n_cols; v++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:840:9: warning: unused variable ‘isident’ [-Wunused-variable]
  840 |     int isident=0;
      |         ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmseq.cpp: In function ‘std::vector<double> meanvar(std::vector<double>, double, double)’:
mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  130 |   for(int i=0;i < v.size(); i++) {
      |               ~~^~~~~~~~~~
mmseq.cpp: In function ‘int main(int, char**)’:
mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  244 |       for(int i=0; i < tokens.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~
mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  423 |       if(M.size1() < m ) factor1=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  424 |       if(M.size2() < n ) factor2=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  594 |   for(unsigned t=0; t < n; t++)  {
      |                     ~~^~~
mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  736 |     for(unsigned t=0; t < n; t++)
      |                       ~~^~~
mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  765 |       for(unsigned t=0; t < n; t++)
      |                         ~~^~~
mmseq.cpp:774:11: warning: unused variable ‘threadid’ [-Wunused-variable]
  774 |       int threadid=OMP_GET_THREAD_NUM;
      |           ^~~~~~~~
mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  829 |   for(unsigned t=0; t < n; t++)
      |                     ~~^~~
mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  912 |       for(unsigned t=0; t < n; t++) {
      |                         ~~^~~
mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  940 |   for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  961 |   for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1098 |   for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
      |                     ~~^~~
mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1112 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1136 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1144 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1149 |   for(int i=0;i < identical_transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1156 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1161 |   for(int i=0;i < gene2transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1168 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1179 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1189 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1208 |     for(int t=0; t < identical_transcripts.size() ; t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1212 |     for(int t=0; t < gene2transcripts.size(); t++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1226 |   for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1227 |   for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1330 |   for(int t=0; t < identical_transcripts.size(); t++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1349 |   for(int g=0; g < gene2transcripts.size(); g++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1473 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1475 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1482 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1484 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1506 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1508 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1514 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1516 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1536 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1538 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1544 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1546 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1560 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1562 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1582 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1584 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1599 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1601 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1619 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1621 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1644 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1646 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1656 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1658 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:308:8: warning: unused variable ‘buf16384’ [-Wunused-variable]
  308 |   char buf16384[16384];
      |        ^~~~~~~~
mmseq.cpp:391:8: warning: variable ‘doublehit’ set but not used [-Wunused-but-set-variable]
  391 |   bool doublehit;
      |        ^~~~~~~~~
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
bam2hits.cpp: In function ‘void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)’:
bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  109 |   for(int i=0; i < sortedfastas.size()-1; i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  119 |       for(int j=0; j < curSet.size()-1; j++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  137 |   for(int j=0; j < curSet.size()-1; j++) {
      |                ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp: In function ‘std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)’:
bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Alignment>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  218 |   for(int j=0; j < alns.size(); j++) {
      |                ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  219 |     if(i < torem.size() && j==torem[i]) {
      |        ~~^~~~~~~~~~~~~~
bam2hits.cpp: In function ‘int main(int, char**)’:
bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  518 |         if(_B != tg[0].size()-2) {
      |            ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  520 |           if(_A == tg[0].size()-2) {
      |              ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  522 |             if(_A != tg[1].size()-2) {
      |                ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  558 |       for(int i=1; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  609 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  645 |     for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
      |                 ~~^~~~~~~~~~~~~~~
bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  659 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  662 |         for(int j =0; j < fastas[i].seq().size(); j++) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  663 |           int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
      |                                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  791 |       for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  920 |     for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  948 |     for(int i=0; i < testIsizes.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  959 |     for(int i=0; i < heights.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  997 |       for(int fl=1; fl <= (it->seq()).size(); fl++) {
      |                     ~~~^~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:1091:56: warning: comparing the result of pointer addition ‘(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >::operator->()->Alignment::NM()))’ and NULL [-Waddress]
 1091 |             ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM")));
      |                                                        ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
extract_transcripts.cpp: In function ‘int main(int, char**)’:
extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  122 |       for(int i=0; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  169 |     for(int i=0; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  195 |       for(int i=0; i < it->starts()->size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~
extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  203 |       while(faline < stitch.size()) {
      |             ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable ‘line’ [-Wunused-variable]
  108 |   int line=0;
      |       ^~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitstools.cpp: In function ‘void convert(char*, std::string)’:
hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
   51 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function ‘int main(int, char**)’:
hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
   96 |                 for(int i = 0; i < transcriptName.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  136 |     for(int i = 0; i < transcriptName.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmdiff.cpp: In function ‘void parse_mmseq(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)’:
mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  100 |   for(int i=0; i < filenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  111 |     for(int j=0; j < tokens.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  138 |       if(k + 1 > features.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  147 |       if(k+1 > y.n_rows) {
      |          ~~~~^~~~~~~~~~
mmdiff.cpp:152:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  152 |       if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
      |          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  173 |   if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
      |                                                    ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:94:46: warning: variable ‘mcse_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                              ^~~~~~~~
mmdiff.cpp:94:59: warning: variable ‘iact_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                                           ^~~~~~~~
mmdiff.cpp: In function ‘void apply_normalisation(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, arma::Mat<double>&, arma::Mat<double>&, double)’:
mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  212 |   for(int i=0; i < uh.n_rows; i++) {
      |                ~~^~~~~~~~~~~
mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  214 |     for(int j=0; j < uh.n_cols; j++) {
      |                  ~~^~~~~~~~~~~
mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  230 |   for(int i=0; i < use.size(); i++) {
      |                ~~^~~~~~~~~~~~
mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  232 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  239 |   for(int sample=0; sample < y.n_cols; sample++) {
      |                     ~~~~~~~^~~~~~~~~~
mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  241 |     for(int i=0; i < use.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  246 |     for(int i=0; i < y.n_rows; i++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)’:
mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  257 |   for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
      |                ~^~~~~~~~~~
mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  258 |   for(int i=0; i < y.n_rows; i++) {
      |                ~~^~~~~~~~~~
mmdiff.cpp:259:19: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<int*, vector<int, allocator<int> > >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
  259 |     random_shuffle(randinds.begin(), randinds.end());
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
                 from mmdiff.cpp:31:
/usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here
 4491 |     random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
      |     ^~~~~~~~~~~~~~
mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  260 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void parse_matrices(std::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)’:
mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  310 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function ‘int main(int, char**)’:
mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  420 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  431 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  439 |       while(ss < arguments.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  451 |       if(ss != arguments.size()) {
      |          ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  578 |   for(int i=0; i < arguments.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  640 |     for(int i=0; i < simple_de.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:759:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  759 |     if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  764 |     for(int feature=0; feature < features.size(); feature++) {
      |                        ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:837:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  837 |     if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  886 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  898 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string<char>::size_type’ {aka ‘const unsigned int’} [-Wsign-compare]
  902 |       found2 = found2==string::npos ? -1 : found2;
      |                ~~~~~~^~~~~~~~~~~~~~
mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  907 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  909 |     if(f < samplenames.size()-1) cout << "\t";
      |        ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  914 |   for(int feature=0; feature < features.size(); feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  926 |         for(int l=0; l < M.n_cols; l++) {
      |                      ~~^~~~~~~~~~
mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  936 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  939 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  941 |       if(f < samplenames.size()-1) cout << "\t";
      |          ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  951 |       for(int feature=0; feature < features.size(); feature++) {
      |                          ~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/bin/ld: /tmp/ccOAmEzA.ltrans0.ltrans.o: in function `main':
/builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/src/bam2hits.cpp:653:(.text.startup+0x26eb): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.TOFkYn
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ '[' /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
++ dirname /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ mkdir /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.0.11-21.fc41 --unique-debug-suffix -1.0.11-21.fc41.i386 --unique-debug-src-base mmseq-1.0.11-21.fc41.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11
find-debuginfo: starting
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/mmseq-1.0.11-21.fc41.i386
542 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
SOURCE_DATE_EPOCH timestamp: 1721952000 (2024-07-26 00:00:00 UTC)
SOURCE_DATE_EPOCH timestamp is in the future: 1721952000 > 1721950103
SOURCE_DATE_EPOCH timestamp: 1721952000 (2024-07-26 00:00:00 UTC)
SOURCE_DATE_EPOCH timestamp is in the future: 1721952000 > 1721950103
SOURCE_DATE_EPOCH timestamp: 1721952000 (2024-07-26 00:00:00 UTC)
SOURCE_DATE_EPOCH timestamp is in the future: 1721952000 > 1721950103
Scanned 12 directories and 40 files,
               processed 0 inodes,
               0 modified (0 replaced + 0 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Tt4K0v
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
++ bin/mmseq --version
++ true
+ test mmseq-1.0.11 = mmseq-1.0.11
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: mmseq-1.0.11-21.fc41.i686
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Ca3Aji
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd mmseq-1.0.11
+ DOCDIR=/builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/README.md /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/COPYING /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/doc /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: mmseq = 1.0.11-21.fc41 mmseq(x86-32) = 1.0.11-21.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh libboost_iostreams.so.1.83.0 libboost_regex.so.1.83.0 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.32) libc.so.6(GLIBC_2.33) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.38) libc.so.6(GLIBC_2.4) libflexiblas.so.3 libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_3.3.1) libgomp.so.1 libgomp.so.1(GOMP_1.0) libgomp.so.1(GOMP_4.0) libgomp.so.1(OMP_1.0) libgsl.so.27 libgslcblas.so.0 libhts.so.3 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.29) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.15) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.26) libstdc++.so.6(GLIBCXX_3.4.29) libstdc++.so.6(GLIBCXX_3.4.30) libstdc++.so.6(GLIBCXX_3.4.32) libstdc++.so.6(GLIBCXX_3.4.9) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debugsource-1.0.11-21.fc41.i686
Provides: mmseq-debugsource = 1.0.11-21.fc41 mmseq-debugsource(x86-32) = 1.0.11-21.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: mmseq-debuginfo-1.0.11-21.fc41.i686
Provides: debuginfo(build-id) = 2bf8a7bd1e091a2c92a6aed234a18877dabbb6c5 debuginfo(build-id) = 49120245e12346119690a3d5d37589e2ed649d4f debuginfo(build-id) = 632b389577d542f0890cc3a3de5cdd68430656e6 debuginfo(build-id) = 6cce129bee3a12348339cab075f68af6d04f5ea0 debuginfo(build-id) = 6f452c92e74acb58722ae9319d34dfb044dc8ae7 debuginfo(build-id) = 7925640b63375d59726f228d82a3ce6c068444d7 debuginfo(build-id) = c058719dae74f7ada510dfe468306b36b1303baa debuginfo(build-id) = d8e6dcc3499bbbc6c9d5bc80cc0210c18aef0521 mmseq-debuginfo = 1.0.11-21.fc41 mmseq-debuginfo(x86-32) = 1.0.11-21.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: mmseq-debugsource(x86-32) = 1.0.11-21.fc41
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
Wrote: /builddir/build/RPMS/mmseq-1.0.11-21.fc41.i686.rpm
Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-21.fc41.i686.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-21.fc41.i686.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.0IzKSr
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild mmseq-1.0.11-21.fc41.src.rpm
Finish: build phase for mmseq-1.0.11-21.fc41.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1721949972.732496/root/var/log/dnf5.log
INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-21.fc41.src.rpm) Config(child) 1 minutes 38 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "mmseq-debuginfo",
            "epoch": null,
            "version": "1.0.11",
            "release": "21.fc41",
            "arch": "i686"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "21.fc41",
            "arch": "src"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "21.fc41",
            "arch": "i686"
        },
        {
            "name": "mmseq-debugsource",
            "epoch": null,
            "version": "1.0.11",
            "release": "21.fc41",
            "arch": "i686"
        }
    ]
}
RPMResults finished