%global packname Biostrings %global Rvers 4.0.0 %global IRange 2.30.1 Name: R-%{packname} Version: 2.64.1 Release: 9%{dist} Summary: String objects representing biological sequences License: Artistic-2.0 URL: http://bioconductor.org/packages/release/bioc/html/Biostrings.html Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz BuildRequires: R-devel >= %{Rvers} tex(latex) R-methods R-utils R-IRanges-devel >= %{IRange} BuildRequires: R-XVector-devel >= 0.29.2, R-BiocGenerics >= 0.37.0, R-S4Vectors-devel >= 0.27.12 BuildRequires: R-graphics, R-methods, R-stats, R-utils, R-grDevices, R-crayon, R-GenomeInfoDb %description Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or set of sequences. %package devel Summary: Development files for %{name} Requires: %{name} = %{version}-%{release} %description devel The %{name}-devel package contains libraries and header files for developing applications that use %{name}. %prep %setup -q -c -n %{packname} %build %install rm -rf %{buildroot} # architecture dependent package mkdir -p %{buildroot}%{_libdir}/R/library R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library # Clean up in advance of check test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -rf %{buildroot}%{_libdir}/R/library/R.css # Empty file rm -f %{buildroot}%{_libdir}/R/library/%{packname}/doc/GenomeSearching.R %check # Requires for R-BSgenome which cannot build without R-Biostring #%%{_bindir}/R CMD check %%{packname} %files #i386 arch %dir %{_libdir}/R/library/%{packname}/ %doc %{_libdir}/R/library/%{packname}/doc %{_libdir}/R/library/%{packname}/DESCRIPTION %doc %{_libdir}/R/library/%{packname}/html %doc %{_libdir}/R/library/%{packname}/NEWS %{_libdir}/R/library/%{packname}/help %{_libdir}/R/library/%{packname}/R %{_libdir}/R/library/%{packname}/extdata %{_libdir}/R/library/%{packname}/data %{_libdir}/R/library/%{packname}/libs %{_libdir}/R/library/%{packname}/Meta %{_libdir}/R/library/%{packname}/INDEX %{_libdir}/R/library/%{packname}/NAMESPACE %{_libdir}/R/library/%{packname}/unitTests/ %files devel %{_libdir}/R/library/%{packname}/include %changelog * Wed Jul 17 2024 Fedora Release Engineering - 2.64.1-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild * Thu Apr 25 2024 Iñaki Úcar - 2.64.1-8 - R-maint-sig mass rebuild * Sat Apr 20 2024 Miroslav Suchý - 2.64.1-7 - convert license to SPDX * Mon Jan 22 2024 Fedora Release Engineering - 2.64.1-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Fri Jan 19 2024 Fedora Release Engineering - 2.64.1-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Wed Jul 19 2023 Fedora Release Engineering - 2.64.1-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Fri Apr 21 2023 Iñaki Úcar - 2.64.1-3 - R-maint-sig mass rebuild * Wed Jan 18 2023 Fedora Release Engineering - 2.64.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Sat Sep 3 2022 Tom Callaway - 2.64.1-1 - update to 2.64.1 - rebuild for R 4.2.1 * Wed Jul 20 2022 Fedora Release Engineering - 2.60.1-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Wed Jan 19 2022 Fedora Release Engineering - 2.60.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Wed Jul 21 2021 Fedora Release Engineering - 2.60.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Wed Jun 16 2021 Tom Callaway - 2.60.1-1 - update to 2.60.1 - Rebuilt for R 4.1.0 * Wed Feb 3 2021 Tom Callaway - 2.58.0-1 - update to 2.58.0 * Mon Jan 25 2021 Fedora Release Engineering - 2.56.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Mon Jul 27 2020 Fedora Release Engineering - 2.56.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Mon Jun 8 2020 Tom Callaway - 2.56.0-1 - update to 2.56.0 - rebuild for R 4 * Tue Jan 28 2020 Fedora Release Engineering - 2.54.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Mon Nov 4 2019 Tom Callaway - 2.54.0-1 - update to 2.54.0 * Mon Aug 12 2019 Elliott Sales de Andrade - 2.48.0-5 - Remove explicit dependencies provided by automatic dependency generator * Wed Jul 24 2019 Fedora Release Engineering - 2.48.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild * Thu Jan 31 2019 Fedora Release Engineering - 2.48.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Thu Jul 12 2018 Fedora Release Engineering - 2.48.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild * Wed May 16 2018 Tom Callaway - 2.48.0-1 - update to 2.48.0 * Wed Feb 07 2018 Fedora Release Engineering - 2.44.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild * Wed Aug 02 2017 Fedora Release Engineering - 2.44.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild * Wed Jul 26 2017 Fedora Release Engineering - 2.44.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild * Wed May 24 2017 Tom Callaway - 2.44.0-1 - update to 2.44.0 * Fri Feb 10 2017 Fedora Release Engineering - 2.38.2-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild * Wed Feb 03 2016 Fedora Release Engineering - 2.38.2-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild * Mon Dec 7 2015 Tom Callaway - 2.38.2-1 - update to 2.38.2 * Tue Jun 16 2015 Fedora Release Engineering - 2.36.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild * Fri May 29 2015 Tom Callaway - 2.36.1-1 - update to 2.36.1, drop doc off DESCRIPTION * Fri Aug 15 2014 Fedora Release Engineering - 2.32.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild * Mon Jun 9 2014 Tom Callaway - 2.32.0-1 - update to 2.32.0 * Fri Jun 06 2014 Fedora Release Engineering - 2.30.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild * Mon Jan 27 2014 pingou 2.30.1-1 - Update to version 2.30.1 * Fri Aug 02 2013 Fedora Release Engineering - 2.28.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild * Sun Apr 07 2013 pingou 2.28.0-1 - Update to version 2.28.0 * Wed Feb 13 2013 pingou 2.26.3-1 - Update to version 2.26.3 * Wed Feb 13 2013 Fedora Release Engineering - 2.26.2-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild * Tue Nov 27 2012 pingou 2.26.2-1 - Update to version 2.26.2 * Wed Jul 18 2012 Fedora Release Engineering - 2.22.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild * Thu Jan 12 2012 Fedora Release Engineering - 2.22.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild * Wed Nov 9 2011 Tom Callaway 2.22.0-1 - update to 2.22.0 * Sat Jul 02 2011 pingou 2.20.1-1 - Update to version 2.20.1 * Tue Mar 15 2011 pingou 2.18.4-1 - Update to version 2.18.4 * Mon Feb 07 2011 Fedora Release Engineering - 2.18.2-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild * Mon Dec 13 2010 pingou 2.18.2-1 - Update to version 2.18.2 * Tue Oct 26 2010 pingou 2.18.0-1 - Update to version 2.18.0 * Tue Sep 07 2010 pingou 2.16.9-1 - Update to version 2.16.9 * Thu Jul 01 2010 pingou 2.16.6-1 - Update to version 2.16.6 - Update the url and source to a more stable format * Sat Jun 05 2010 pingou 2.16.4-1 - Update to version 2.16.4 - Update to R-2.11.0 - Remove the post/postun scriplet - Update R and BR to R-core and R-devel * Tue Mar 02 2010 pingou 2.14.12-1 - Update to 2.14.12 * Thu Jan 14 2010 pingou 2.14.10-1 - Update to 2.14.10 * Thu Dec 17 2009 pingou 2.14.9-2 - Update dependancy to IRanges 1.4.8 * Thu Dec 17 2009 pingou 2.14.9-1 - Update to 2.14.9 * Fri Dec 04 2009 pingou 2.14.7-2 - Remove the folder R-ex * Sat Nov 21 2009 pingou 2.14.7-1 - Update to 2.14.7 - Remove %%post and %%postun - Adapt %%files to R-2.10.0 * Fri Sep 18 2009 pingou 2.12.9-1 - Update to 2.12.9 * Sun Aug 23 2009 pingou 2.12.8-1 - Update to 2.12.8 * Fri Jul 24 2009 Fedora Release Engineering - 2.12.7-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild * Mon Jul 13 2009 pingou 2.12.7-1 - Update to 2.12.7 * Fri Jun 12 2009 pingou 2.12.6-1 - Update to 2.12.6 * Wed May 06 2009 pingou 2.12.1-2 - Solve dependencies issue (Add R-Biobase as R and BR) / * Fri May 01 2009 pingou 2.12.1-1 - Update to 2.12.1 * Tue Apr 28 2009 pingou 2.12.0-1 - Update to Bioconductor 2.4 for R 2.9.0 * Fri Apr 03 2009 pingou 2.11.47-1 - Update to the development version of bioconductor * Wed Apr 01 2009 pingou 2.10.21-2 - Update URL to remove an unused macro - Improve english in the comments - Remove pkgconfig as BR of the -devel * Fri Mar 13 2009 pingou 2.10.21-1 - initial package for Fedora