Warning: Permanently added '165.192.136.191' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6418864-fedora-rawhide-s390x --chroot fedora-rawhide-s390x Version: 0.69 PID: 5986 Logging PID: 5987 Task: {'appstream': False, 'background': True, 'build_id': 6418864, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-s390x', 'enable_net': False, 'fedora_review': False, 'git_hash': '3b3e6ac20e5885a65e488b1d86b1c3703b95537e', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/avogadro2-libs', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'avogadro2-libs', 'package_version': '1.97.0-8', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-rawhide-s390x/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/sagitter', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/sagitter', 'tags': [], 'task_id': '6418864-fedora-rawhide-s390x', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/avogadro2-libs /var/lib/copr-rpmbuild/workspace/workdir-pn0i1v94/avogadro2-libs --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/avogadro2-libs', '/var/lib/copr-rpmbuild/workspace/workdir-pn0i1v94/avogadro2-libs', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-pn0i1v94/avogadro2-libs'... Running: git checkout 3b3e6ac20e5885a65e488b1d86b1c3703b95537e -- cmd: ['git', 'checkout', '3b3e6ac20e5885a65e488b1d86b1c3703b95537e', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-pn0i1v94/avogadro2-libs rc: 0 stdout: stderr: Note: switching to '3b3e6ac20e5885a65e488b1d86b1c3703b95537e'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 3b3e6ac automatic import of avogadro2-libs Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-pn0i1v94/avogadro2-libs rc: 0 /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading avogadro2-libs-crystals-1.0.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o avogadro2-libs-crystals-1.0.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/avogadro2-libs/avogadro2-libs-crystals-1.0.1.tar.gz/md5/b05b526928b89fd27a5784b24c419613/avogadro2-libs-crystals-1.0.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 148k 100 148k 0 0 130k 0 0:00:01 0:00:01 --:--:-- 130k INFO: Reading stdout from command: md5sum avogadro2-libs-crystals-1.0.1.tar.gz INFO: Downloading avogadro2-libs-molecules-master.zip INFO: Calling: curl -H Pragma: -o avogadro2-libs-molecules-master.zip --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/avogadro2-libs/avogadro2-libs-molecules-master.zip/md5/c109a16d04a775839f87de1149af3ef1/avogadro2-libs-molecules-master.zip % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 453k 100 453k 0 0 371k 0 0:00:01 0:00:01 --:--:-- 371k INFO: Reading stdout from command: md5sum avogadro2-libs-molecules-master.zip INFO: Downloading avogadrolibs-1.97.0.tar.gz INFO: Calling: curl -H Pragma: -o avogadrolibs-1.97.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/avogadro2-libs/avogadrolibs-1.97.0.tar.gz/md5/a7cc488fb0ab65516117304df62fb2e9/avogadrolibs-1.97.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 10.9M 100 10.9M 0 0 5335k 0 0:00:02 0:00:02 --:--:-- 5335k INFO: Reading stdout from command: md5sum avogadrolibs-1.97.0.tar.gz INFO: Downloading avogenerators-1.97.0.tar.gz INFO: Calling: curl -H Pragma: -o avogenerators-1.97.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/avogadro2-libs/avogenerators-1.97.0.tar.gz/md5/d115ab0f5f4dbf10d2ba2d1191c80a59/avogenerators-1.97.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 15677 100 15677 0 0 26058 0 --:--:-- --:--:-- --:--:-- 26041 INFO: Reading stdout from command: md5sum avogenerators-1.97.0.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-pn0i1v94/avogadro2-libs/avogadro2-libs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-pn0i1v94/avogadro2-libs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1695149272.169511 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.1.1 starting (python version = 3.11.3, NVR = mock-5.1.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-pn0i1v94/avogadro2-libs/avogadro2-libs.spec) Config(fedora-rawhide-s390x) Start: clean chroot Finish: clean chroot Mock Version: 5.1.1 INFO: Mock Version: 5.1.1 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1695149272.169511/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-s390x-bootstrap-1695149272.169511/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/92517d7847ec429f9f4e47b73cf3081dd63295dc33ee1bab053bba8e130a027a/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/92517d7847ec429f9f4e47b73cf3081dd63295dc33ee1bab053bba8e130a027a/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 2.6 MB/s | 15 MB 00:05 Additional repo http_kojipkgs_fedoraproject_org 2.9 MB/s | 65 MB 00:22 fedora 6.2 MB/s | 63 MB 00:10 Last metadata expiration check: 0:00:09 ago on Tue Sep 19 18:49:15 2023. Package python3-dnf-4.16.2-4.fc40.noarch is already installed. Dependencies resolved. ========================================================================================================================= Package Arch Version Repository Size ========================================================================================================================= Installing: python3-dnf-plugins-core noarch 4.4.2-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 278 k Installing dependencies: dbus-libs s390x 1:1.14.10-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 159 k python3-dateutil noarch 1:2.8.2-10.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 344 k python3-dbus s390x 1.3.2-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 147 k python3-distro noarch 1.8.0-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 44 k python3-six noarch 1.16.0-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k python3-systemd s390x 235-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100 k Transaction Summary ========================================================================================================================= Install 7 Packages Total download size: 1.1 M Installed size: 3.5 M Downloading Packages: (1/7): python3-dbus-1.3.2-4.fc39.s390x.rpm 109 kB/s | 147 kB 00:01 (2/7): dbus-libs-1.14.10-1.fc40.s390x.rpm 114 kB/s | 159 kB 00:01 (3/7): python3-dateutil-2.8.2-10.fc39.noarch.rp 220 kB/s | 344 kB 00:01 (4/7): python3-distro-1.8.0-6.fc39.noarch.rpm 130 kB/s | 44 kB 00:00 (5/7): python3-dnf-plugins-core-4.4.2-1.fc39.no 543 kB/s | 278 kB 00:00 (6/7): python3-six-1.16.0-12.fc39.noarch.rpm 118 kB/s | 41 kB 00:00 (7/7): python3-systemd-235-5.fc39.s390x.rpm 296 kB/s | 100 kB 00:00 -------------------------------------------------------------------------------- Total 547 kB/s | 1.1 MB 00:02 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-systemd-235-5.fc39.s390x 1/7 Installing : python3-six-1.16.0-12.fc39.noarch 2/7 Installing : python3-dateutil-1:2.8.2-10.fc39.noarch 3/7 Installing : python3-distro-1.8.0-6.fc39.noarch 4/7 Installing : dbus-libs-1:1.14.10-1.fc40.s390x 5/7 Installing : python3-dbus-1.3.2-4.fc39.s390x 6/7 Installing : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7 Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7 Verifying : dbus-libs-1:1.14.10-1.fc40.s390x 1/7 Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 2/7 Verifying : python3-dbus-1.3.2-4.fc39.s390x 3/7 Verifying : python3-distro-1.8.0-6.fc39.noarch 4/7 Verifying : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 5/7 Verifying : python3-six-1.16.0-12.fc39.noarch 6/7 Verifying : python3-systemd-235-5.fc39.s390x 7/7 Installed: dbus-libs-1:1.14.10-1.fc40.s390x python3-dateutil-1:2.8.2-10.fc39.noarch python3-dbus-1.3.2-4.fc39.s390x python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.s390x Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1695149272.169511/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 11 MB/s | 15 MB 00:01 Additional repo http_kojipkgs_fedoraproject_org 6.1 MB/s | 65 MB 00:10 fedora 12 MB/s | 63 MB 00:05 Last metadata expiration check: 0:00:05 ago on Tue Sep 19 18:50:34 2023. Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing group/module packages: bash s390x 5.2.15-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M bzip2 s390x 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 53 k coreutils s390x 9.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M cpio s390x 2.14-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 276 k diffutils s390x 3.10-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 398 k fedora-release-common noarch 40-0.7 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 18 k findutils s390x 1:4.9.0-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 488 k gawk s390x 5.2.2-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M glibc-minimal-langpack s390x 2.38.9000-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 74 k grep s390x 3.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 294 k gzip s390x 1.12-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 166 k info s390x 7.0.3-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192 k patch s390x 2.7.6-22.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134 k redhat-rpm-config noarch 266-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 73 k rpm-build s390x 4.18.99-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 70 k sed s390x 4.8-14.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 300 k shadow-utils s390x 2:4.14.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M tar s390x 2:1.35-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 865 k unzip s390x 6.0-62.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 194 k util-linux s390x 2.39.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M which s390x 2.21-40.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43 k xz s390x 5.4.4-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 531 k Installing dependencies: alternatives s390x 1.25-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k ansible-srpm-macros noarch 1-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k audit-libs s390x 3.1.2-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121 k authselect s390x 1.4.2-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 139 k authselect-libs s390x 1.4.2-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 234 k basesystem noarch 11-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 k binutils s390x 2.41-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.9 M binutils-gold s390x 2.41-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 993 k bzip2-libs s390x 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 46 k ca-certificates noarch 2023.2.60_v7.0.306-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 837 k coreutils-common s390x 9.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M cracklib s390x 2.9.11-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 83 k crypto-policies noarch 20230731-1.git5ed06e0.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 68 k curl s390x 8.3.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 353 k cyrus-sasl-lib 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util-linux-core s390x 2.39.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 482 k xxhash-libs s390x 0.8.2-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k xz-libs s390x 5.4.4-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 114 k zip s390x 3.0-39.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 283 k zlib s390x 1.2.13-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101 k zstd s390x 1.5.5-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 506 k Installing Groups: Buildsystem building group Transaction Summary ======================================================================================================================================== Install 152 Packages Total download size: 52 M Installed size: 179 M Downloading Packages: (1/152): gdb-minimal-13.2-9.fc40.s390x.rpm 41 MB/s | 4.0 MB 00:00 (2/152): ansible-srpm-macros-1-11.fc39.noarch.r 20 kB/s | 21 kB 00:01 (3/152): alternatives-1.25-1.fc39.s390x.rpm 33 kB/s | 39 kB 00:01 (4/152): audit-libs-3.1.2-4.fc40.s390x.rpm 87 kB/s | 121 kB 00:01 (5/152): authselect-1.4.2-3.fc39.s390x.rpm 205 kB/s | 139 kB 00:00 (6/152): basesystem-11-18.fc39.noarch.rpm 21 kB/s | 7.2 kB 00:00 (7/152): authselect-libs-1.4.2-3.fc39.s390x.rpm 338 kB/s | 234 kB 00:00 (8/152): bash-5.2.15-5.fc39.s390x.rpm 2.1 MB/s | 1.8 MB 00:00 (9/152): binutils-gold-2.41-5.fc40.s390x.rpm 1.1 MB/s | 993 kB 00:00 (10/152): bzip2-1.0.8-16.fc39.s390x.rpm 156 kB/s | 53 kB 00:00 (11/152): binutils-2.41-5.fc40.s390x.rpm 4.8 MB/s | 5.9 MB 00:01 (12/152): bzip2-libs-1.0.8-16.fc39.s390x.rpm 137 kB/s | 46 kB 00:00 (13/152): ca-certificates-2023.2.60_v7.0.306-3. 2.3 MB/s | 837 kB 00:00 (14/152): coreutils-9.4-1.fc40.s390x.rpm 3.4 MB/s | 1.2 MB 00:00 (15/152): coreutils-common-9.4-1.fc40.s390x.rpm 5.9 MB/s | 2.1 MB 00:00 (16/152): cpio-2.14-4.fc39.s390x.rpm 799 kB/s | 276 kB 00:00 (17/152): cracklib-2.9.11-2.fc39.s390x.rpm 238 kB/s | 83 kB 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8.0 kB 00:00 (33/152): fedora-release-common-40-0.7.noarch.r 53 kB/s | 18 kB 00:00 (34/152): fedora-release-identity-basic-40-0.7. 26 kB/s | 8.8 kB 00:00 (35/152): fedora-repos-40-0.1.noarch.rpm 27 kB/s | 9.4 kB 00:00 (36/152): fedora-repos-rawhide-40-0.1.noarch.rp 26 kB/s | 9.0 kB 00:00 (37/152): file-5.45-1.fc40.s390x.rpm 140 kB/s | 49 kB 00:00 (38/152): file-libs-5.45-1.fc40.s390x.rpm 2.2 MB/s | 769 kB 00:00 (39/152): findutils-4.9.0-6.fc40.s390x.rpm 1.4 MB/s | 488 kB 00:00 (40/152): fonts-srpm-macros-2.0.5-12.fc39.noarc 78 kB/s | 26 kB 00:00 (41/152): filesystem-3.18-6.fc39.s390x.rpm 1.2 MB/s | 1.1 MB 00:00 (42/152): forge-srpm-macros-0.1.0-1.fc40.noarch 53 kB/s | 18 kB 00:00 (43/152): fpc-srpm-macros-1.3-8.fc39.noarch.rpm 22 kB/s | 7.4 kB 00:00 (44/152): gawk-5.2.2-2.fc39.s390x.rpm 3.1 MB/s | 1.1 MB 00:00 (45/152): gdbm-libs-1.23-4.fc39.s390x.rpm 170 kB/s | 58 kB 00:00 (46/152): ghc-srpm-macros-1.6.1-2.fc39.noarch.r 22 kB/s | 7.8 kB 00:00 (47/152): glibc-2.38.9000-9.fc40.s390x.rpm 5.2 MB/s | 1.8 MB 00:00 (48/152): glibc-common-2.38.9000-9.fc40.s390x.r 1.0 MB/s | 368 kB 00:00 (49/152): glibc-minimal-langpack-2.38.9000-9.fc 215 kB/s | 74 kB 00:00 (50/152): gmp-6.2.1-5.fc39.s390x.rpm 947 kB/s | 325 kB 00:00 (51/152): glibc-gconv-extra-2.38.9000-9.fc40.s3 2.4 MB/s | 1.6 MB 00:00 (52/152): gnat-srpm-macros-6-3.fc39.noarch.rpm 26 kB/s | 8.8 kB 00:00 (53/152): go-srpm-macros-3.2.0-7.fc40.noarch.rp 80 kB/s | 27 kB 00:00 (54/152): grep-3.11-5.fc40.s390x.rpm 836 kB/s | 294 kB 00:00 (55/152): gzip-1.12-6.fc39.s390x.rpm 482 kB/s | 166 kB 00:00 (56/152): info-7.0.3-3.fc39.s390x.rpm 559 kB/s | 192 kB 00:00 (57/152): jansson-2.13.1-7.fc39.s390x.rpm 124 kB/s | 44 kB 00:00 (58/152): kernel-srpm-macros-1.0-20.fc39.noarch 31 kB/s | 10 kB 00:00 (59/152): keyutils-libs-1.6.1-7.fc39.s390x.rpm 91 kB/s | 31 kB 00:00 (60/152): krb5-libs-1.21.2-1.fc40.s390x.rpm 2.2 MB/s | 776 kB 00:00 (61/152): libacl-2.3.1-9.fc40.s390x.rpm 70 kB/s | 24 kB 00:00 (62/152): 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libidn2-2.3.4-3.fc39.s390x.rpm 326 kB/s | 111 kB 00:00 (78/152): libmount-2.39.2-1.fc40.s390x.rpm 438 kB/s | 158 kB 00:00 (79/152): libnghttp2-1.56.0-1.fc40.s390x.rpm 218 kB/s | 78 kB 00:00 (80/152): libnsl2-2.0.0-6.fc39.s390x.rpm 87 kB/s | 30 kB 00:00 (81/152): libpkgconf-1.9.5-2.fc39.s390x.rpm 110 kB/s | 38 kB 00:00 (82/152): libpsl-0.21.2-4.fc39.s390x.rpm 184 kB/s | 63 kB 00:00 (83/152): libpwquality-1.4.5-6.fc39.s390x.rpm 318 kB/s | 109 kB 00:00 (84/152): libselinux-3.5-5.fc39.s390x.rpm 263 kB/s | 91 kB 00:00 (85/152): libsemanage-3.5-4.fc39.s390x.rpm 355 kB/s | 122 kB 00:00 (86/152): libsepol-3.5-2.fc39.s390x.rpm 953 kB/s | 330 kB 00:00 (87/152): libsigsegv-2.14-5.fc39.s390x.rpm 77 kB/s | 27 kB 00:00 (88/152): libsmartcols-2.39.2-1.fc40.s390x.rpm 195 kB/s | 70 kB 00:00 (89/152): libssh-0.10.5-2.fc39.s390x.rpm 581 kB/s | 209 kB 00:00 (90/152): libssh-config-0.10.5-2.fc39.noarch.rp 27 kB/s | 9.2 kB 00:00 (91/152): libstdc++-13.2.1-3.fc40.s390x.rpm 2.6 MB/s | 950 kB 00:00 (92/152): libtasn1-4.19.0-3.fc39.s390x.rpm 226 kB/s | 77 kB 00:00 (93/152): libtirpc-1.3.3-1.rc2.fc39.s390x.rpm 269 kB/s | 95 kB 00:00 (94/152): libunistring-1.1-5.fc40.s390x.rpm 1.5 MB/s | 556 kB 00:00 (95/152): libutempter-1.2.1-10.fc39.s390x.rpm 76 kB/s | 26 kB 00:00 (96/152): libuuid-2.39.2-1.fc40.s390x.rpm 81 kB/s | 28 kB 00:00 (97/152): libverto-0.3.2-6.fc39.s390x.rpm 60 kB/s | 21 kB 00:00 (98/152): libxcrypt-4.4.36-2.fc39.s390x.rpm 362 kB/s | 124 kB 00:00 (99/152): libxml2-2.11.5-1.fc40.s390x.rpm 1.3 MB/s | 711 kB 00:00 (100/152): libzstd-1.5.5-4.fc39.s390x.rpm 970 kB/s | 342 kB 00:00 (101/152): lua-libs-5.4.6-3.fc39.s390x.rpm 413 kB/s | 142 kB 00:00 (102/152): lua-srpm-macros-1-9.fc39.noarch.rpm 25 kB/s | 8.6 kB 00:00 (103/152): lz4-libs-1.9.4-4.fc39.s390x.rpm 233 kB/s | 81 kB 00:00 (104/152): mpfr-4.2.0-3.fc39.s390x.rpm 850 kB/s | 298 kB 00:00 (105/152): ncurses-base-6.4-7.20230520.fc40.noa 178 kB/s | 63 kB 00:00 (106/152): ncurses-libs-6.4-7.20230520.fc40.s39 1.0 MB/s | 361 kB 00:00 (107/152): ocaml-srpm-macros-8-2.fc39.noarch.rp 39 kB/s | 14 kB 00:00 (108/152): openblas-srpm-macros-2-14.fc39.noarc 22 kB/s | 7.5 kB 00:00 (109/152): openldap-2.6.6-1.fc39.s390x.rpm 758 kB/s | 262 kB 00:00 (110/152): p11-kit-0.25.0-2.fc39.s390x.rpm 1.3 MB/s | 493 kB 00:00 (111/152): p11-kit-trust-0.25.0-2.fc39.s390x.rp 411 kB/s | 141 kB 00:00 (112/152): openssl-libs-3.1.1-4.fc40.s390x.rpm 2.7 MB/s | 1.9 MB 00:00 (113/152): package-notes-srpm-macros-0.5-9.fc39 33 kB/s | 11 kB 00:00 (114/152): pam-1.5.3-2.fc39.s390x.rpm 1.4 MB/s | 521 kB 00:00 (115/152): pam-libs-1.5.3-2.fc39.s390x.rpm 170 kB/s | 59 kB 00:00 (116/152): patch-2.7.6-22.fc39.s390x.rpm 384 kB/s | 134 kB 00:00 (117/152): pcre2-10.42-1.fc39.2.s390x.rpm 727 kB/s | 250 kB 00:00 (118/152): pcre2-syntax-10.42-1.fc39.2.noarch.r 409 kB/s | 143 kB 00:00 (119/152): perl-srpm-macros-1-51.fc39.noarch.rp 24 kB/s | 8.0 kB 00:00 (120/152): pkgconf-1.9.5-2.fc39.s390x.rpm 124 kB/s | 43 kB 00:00 (121/152): pkgconf-m4-1.9.5-2.fc39.noarch.rpm 40 kB/s | 14 kB 00:00 (122/152): pkgconf-pkg-config-1.9.5-2.fc39.s390 28 kB/s | 9.6 kB 00:00 (123/152): popt-1.19-3.fc39.s390x.rpm 182 kB/s | 62 kB 00:00 (124/152): publicsuffix-list-dafsa-20230812-1.f 166 kB/s | 57 kB 00:00 (125/152): pyproject-srpm-macros-1.9.0-2.fc39.n 41 kB/s | 14 kB 00:00 (126/152): python-srpm-macros-3.12-4.fc40.noarc 74 kB/s | 25 kB 00:00 (127/152): qt5-srpm-macros-5.15.10-2.fc39.noarc 24 kB/s | 8.3 kB 00:00 (128/152): qt6-srpm-macros-6.5.2-3.fc40.noarch. 27 kB/s | 9.0 kB 00:00 (129/152): readline-8.2-4.fc39.s390x.rpm 668 kB/s | 229 kB 00:00 (130/152): redhat-rpm-config-266-1.fc40.noarch. 209 kB/s | 73 kB 00:00 (131/152): rpm-4.18.99-1.fc40.s390x.rpm 1.4 MB/s | 510 kB 00:00 (132/152): rpm-build-4.18.99-1.fc40.s390x.rpm 203 kB/s | 70 kB 00:00 (133/152): rpm-build-libs-4.18.99-1.fc40.s390x. 280 kB/s | 97 kB 00:00 (134/152): rpm-libs-4.18.99-1.fc40.s390x.rpm 929 kB/s | 323 kB 00:00 (135/152): rpm-sequoia-1.5.0-1.fc40.s390x.rpm 2.7 MB/s | 1.0 MB 00:00 (136/152): rust-srpm-macros-24-5.fc40.noarch.rp 34 kB/s | 12 kB 00:00 (137/152): sed-4.8-14.fc39.s390x.rpm 864 kB/s | 300 kB 00:00 (138/152): setup-2.14.4-1.fc39.noarch.rpm 428 kB/s | 148 kB 00:00 (139/152): shadow-utils-4.14.0-1.fc40.s390x.rpm 2.3 MB/s | 1.2 MB 00:00 (140/152): sqlite-libs-3.43.1-1.fc40.s390x.rpm 2.1 MB/s | 737 kB 00:00 (141/152): systemd-libs-254.2-7.fc40.s390x.rpm 2.0 MB/s | 696 kB 00:00 (142/152): tar-1.35-2.fc40.s390x.rpm 2.4 MB/s | 865 kB 00:00 (143/152): unzip-6.0-62.fc39.s390x.rpm 564 kB/s | 194 kB 00:00 (144/152): util-linux-2.39.2-1.fc40.s390x.rpm 2.1 MB/s | 1.1 MB 00:00 (145/152): util-linux-core-2.39.2-1.fc40.s390x. 1.2 MB/s | 482 kB 00:00 (146/152): which-2.21-40.fc39.s390x.rpm 127 kB/s | 43 kB 00:00 (147/152): xxhash-libs-0.8.2-1.fc39.s390x.rpm 107 kB/s | 37 kB 00:00 (148/152): xz-5.4.4-1.fc39.s390x.rpm 1.5 MB/s | 531 kB 00:00 (149/152): xz-libs-5.4.4-1.fc39.s390x.rpm 327 kB/s | 114 kB 00:00 (150/152): zip-3.0-39.fc40.s390x.rpm 800 kB/s | 283 kB 00:00 (151/152): zlib-1.2.13-4.fc39.s390x.rpm 294 kB/s | 101 kB 00:00 (152/152): zstd-1.5.5-4.fc39.s390x.rpm 1.4 MB/s | 506 kB 00:00 -------------------------------------------------------------------------------- Total 2.6 MB/s | 52 MB 00:19 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.s390x 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-3.fc40.s390x 1/152 Running scriptlet: libgcc-13.2.1-3.fc40.s390x 1/152 Installing : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 2/152 Running scriptlet: crypto-policies-20230731-1.git5ed06e0.fc39.noarc 2/152 Installing : fedora-release-identity-basic-40-0.7.noarch 3/152 Installing : fedora-repos-rawhide-40-0.1.noarch 4/152 Installing : fedora-gpg-keys-40-0.1.noarch 5/152 Installing : fedora-repos-40-0.1.noarch 6/152 Installing : fedora-release-common-40-0.7.noarch 7/152 Installing : fedora-release-40-0.7.noarch 8/152 Installing : setup-2.14.4-1.fc39.noarch 9/152 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.4-1.fc39.noarch 9/152 Installing : filesystem-3.18-6.fc39.s390x 10/152 Installing : basesystem-11-18.fc39.noarch 11/152 Installing : rust-srpm-macros-24-5.fc40.noarch 12/152 Installing : qt6-srpm-macros-6.5.2-3.fc40.noarch 13/152 Installing : qt5-srpm-macros-5.15.10-2.fc39.noarch 14/152 Installing : pyproject-srpm-macros-1.9.0-2.fc39.noarch 15/152 Installing : publicsuffix-list-dafsa-20230812-1.fc40.noarch 16/152 Installing : pkgconf-m4-1.9.5-2.fc39.noarch 17/152 Installing : perl-srpm-macros-1-51.fc39.noarch 18/152 Installing : pcre2-syntax-10.42-1.fc39.2.noarch 19/152 Installing : package-notes-srpm-macros-0.5-9.fc39.noarch 20/152 Installing : openblas-srpm-macros-2-14.fc39.noarch 21/152 Installing : ocaml-srpm-macros-8-2.fc39.noarch 22/152 Installing : ncurses-base-6.4-7.20230520.fc40.noarch 23/152 Installing : glibc-gconv-extra-2.38.9000-9.fc40.s390x 24/152 Running scriptlet: glibc-gconv-extra-2.38.9000-9.fc40.s390x 24/152 Installing : glibc-minimal-langpack-2.38.9000-9.fc40.s390x 25/152 Installing : glibc-common-2.38.9000-9.fc40.s390x 26/152 Running scriptlet: glibc-2.38.9000-9.fc40.s390x 27/152 Installing : glibc-2.38.9000-9.fc40.s390x 27/152 Running scriptlet: glibc-2.38.9000-9.fc40.s390x 27/152 Installing : ncurses-libs-6.4-7.20230520.fc40.s390x 28/152 Installing : bash-5.2.15-5.fc39.s390x 29/152 Running scriptlet: bash-5.2.15-5.fc39.s390x 29/152 Installing : zlib-1.2.13-4.fc39.s390x 30/152 Installing : xz-libs-5.4.4-1.fc39.s390x 31/152 Installing : bzip2-libs-1.0.8-16.fc39.s390x 32/152 Installing : libstdc++-13.2.1-3.fc40.s390x 33/152 Installing : libuuid-2.39.2-1.fc40.s390x 34/152 Installing : libzstd-1.5.5-4.fc39.s390x 35/152 Installing : elfutils-libelf-0.189-6.fc40.s390x 36/152 Installing : popt-1.19-3.fc39.s390x 37/152 Installing : libblkid-2.39.2-1.fc40.s390x 38/152 Installing : readline-8.2-4.fc39.s390x 39/152 Installing : gmp-1:6.2.1-5.fc39.s390x 40/152 Installing : libattr-2.5.1-9.fc40.s390x 41/152 Installing : libacl-2.3.1-9.fc40.s390x 42/152 Installing : libcap-2.48-7.fc39.s390x 43/152 Installing : libxcrypt-4.4.36-2.fc39.s390x 44/152 Installing : lz4-libs-1.9.4-4.fc39.s390x 45/152 Installing : systemd-libs-254.2-7.fc40.s390x 46/152 Installing : mpfr-4.2.0-3.fc39.s390x 47/152 Installing : dwz-0.15-3.fc39.s390x 48/152 Installing : unzip-6.0-62.fc39.s390x 49/152 Installing : file-libs-5.45-1.fc40.s390x 50/152 Installing : file-5.45-1.fc40.s390x 51/152 Installing : alternatives-1.25-1.fc39.s390x 52/152 Installing : jansson-2.13.1-7.fc39.s390x 53/152 Installing : libcap-ng-0.8.3-8.fc40.s390x 54/152 Installing : audit-libs-3.1.2-4.fc40.s390x 55/152 Installing : pam-libs-1.5.3-2.fc39.s390x 56/152 Installing : libcom_err-1.47.0-2.fc39.s390x 57/152 Installing : libsepol-3.5-2.fc39.s390x 58/152 Installing : libsmartcols-2.39.2-1.fc40.s390x 59/152 Installing : libunistring-1.1-5.fc40.s390x 60/152 Installing : libidn2-2.3.4-3.fc39.s390x 61/152 Installing : lua-libs-5.4.6-3.fc39.s390x 62/152 Installing : pcre2-10.42-1.fc39.2.s390x 63/152 Installing : libselinux-3.5-5.fc39.s390x 64/152 Installing : sed-4.8-14.fc39.s390x 65/152 Installing : grep-3.11-5.fc40.s390x 66/152 Installing : findutils-1:4.9.0-6.fc40.s390x 67/152 Installing : xz-5.4.4-1.fc39.s390x 68/152 Installing : libmount-2.39.2-1.fc40.s390x 69/152 Installing : util-linux-core-2.39.2-1.fc40.s390x 70/152 Installing : libsemanage-3.5-4.fc39.s390x 71/152 Installing : tar-2:1.35-2.fc40.s390x 72/152 Installing : libpsl-0.21.2-4.fc39.s390x 73/152 Installing : zip-3.0-39.fc40.s390x 74/152 Installing : zstd-1.5.5-4.fc39.s390x 75/152 Installing : libfdisk-2.39.2-1.fc40.s390x 76/152 Installing : bzip2-1.0.8-16.fc39.s390x 77/152 Installing : libxml2-2.11.5-1.fc40.s390x 78/152 Installing : sqlite-libs-3.43.1-1.fc40.s390x 79/152 Installing : ed-1.19-4.fc39.s390x 80/152 Installing : patch-2.7.6-22.fc39.s390x 81/152 Installing : elfutils-default-yama-scope-0.189-6.fc40.noarch 82/152 Running scriptlet: elfutils-default-yama-scope-0.189-6.fc40.noarch 82/152 Installing : cpio-2.14-4.fc39.s390x 83/152 Installing : diffutils-3.10-3.fc39.s390x 84/152 Installing : gdbm-libs-1:1.23-4.fc39.s390x 85/152 Installing : cyrus-sasl-lib-2.1.28-11.fc39.s390x 86/152 Installing : keyutils-libs-1.6.1-7.fc39.s390x 87/152 Installing : libbrotli-1.1.0-1.fc40.s390x 88/152 Installing : libdb-5.3.28-58.fc40.s390x 89/152 Installing : libeconf-0.5.2-1.fc40.s390x 90/152 Installing : shadow-utils-2:4.14.0-1.fc40.s390x 91/152 Running scriptlet: libutempter-1.2.1-10.fc39.s390x 92/152 Installing : libutempter-1.2.1-10.fc39.s390x 92/152 Installing : libffi-3.4.4-4.fc39.s390x 93/152 Installing : p11-kit-0.25.0-2.fc39.s390x 94/152 Installing : libgomp-13.2.1-3.fc40.s390x 95/152 Installing : libnghttp2-1.56.0-1.fc40.s390x 96/152 Installing : libpkgconf-1.9.5-2.fc39.s390x 97/152 Installing : pkgconf-1.9.5-2.fc39.s390x 98/152 Installing : pkgconf-pkg-config-1.9.5-2.fc39.s390x 99/152 Installing : libsigsegv-2.14-5.fc39.s390x 100/152 Installing : gawk-5.2.2-2.fc39.s390x 101/152 Installing : libtasn1-4.19.0-3.fc39.s390x 102/152 Installing : p11-kit-trust-0.25.0-2.fc39.s390x 103/152 Running scriptlet: p11-kit-trust-0.25.0-2.fc39.s390x 103/152 Installing : libverto-0.3.2-6.fc39.s390x 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cracklib-2.9.11-2.fc39.s390x 119/152 Installing : libpwquality-1.4.5-6.fc39.s390x 120/152 Installing : authselect-1.4.2-3.fc39.s390x 121/152 Installing : libnsl2-2.0.0-6.fc39.s390x 122/152 Installing : pam-1.5.3-2.fc39.s390x 123/152 Installing : libssh-0.10.5-2.fc39.s390x 124/152 Installing : libarchive-3.7.2-1.fc40.s390x 125/152 Installing : libevent-2.1.12-9.fc39.s390x 126/152 Installing : openldap-2.6.6-1.fc39.s390x 127/152 Installing : libcurl-8.3.0-1.fc40.s390x 128/152 Installing : elfutils-libs-0.189-6.fc40.s390x 129/152 Installing : elfutils-debuginfod-client-0.189-6.fc40.s390x 130/152 Installing : binutils-gold-2.41-5.fc40.s390x 131/152 Running scriptlet: binutils-gold-2.41-5.fc40.s390x 131/152 Installing : binutils-2.41-5.fc40.s390x 132/152 Running scriptlet: binutils-2.41-5.fc40.s390x 132/152 Installing : gdb-minimal-13.2-9.fc40.s390x 133/152 Installing : elfutils-0.189-6.fc40.s390x 134/152 Installing : debugedit-5.0-10.fc39.s390x 135/152 Installing : curl-8.3.0-1.fc40.s390x 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ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 152/152 Running scriptlet: authselect-libs-1.4.2-3.fc39.s390x 152/152 Running scriptlet: rpm-4.18.99-1.fc40.s390x 152/152 Running scriptlet: info-7.0.3-3.fc39.s390x 152/152 Verifying : gdb-minimal-13.2-9.fc40.s390x 1/152 Verifying : alternatives-1.25-1.fc39.s390x 2/152 Verifying : ansible-srpm-macros-1-11.fc39.noarch 3/152 Verifying : audit-libs-3.1.2-4.fc40.s390x 4/152 Verifying : authselect-1.4.2-3.fc39.s390x 5/152 Verifying : authselect-libs-1.4.2-3.fc39.s390x 6/152 Verifying : basesystem-11-18.fc39.noarch 7/152 Verifying : bash-5.2.15-5.fc39.s390x 8/152 Verifying : binutils-2.41-5.fc40.s390x 9/152 Verifying : binutils-gold-2.41-5.fc40.s390x 10/152 Verifying : bzip2-1.0.8-16.fc39.s390x 11/152 Verifying : bzip2-libs-1.0.8-16.fc39.s390x 12/152 Verifying : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 13/152 Verifying : coreutils-9.4-1.fc40.s390x 14/152 Verifying : coreutils-common-9.4-1.fc40.s390x 15/152 Verifying : cpio-2.14-4.fc39.s390x 16/152 Verifying : cracklib-2.9.11-2.fc39.s390x 17/152 Verifying : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 18/152 Verifying : curl-8.3.0-1.fc40.s390x 19/152 Verifying : cyrus-sasl-lib-2.1.28-11.fc39.s390x 20/152 Verifying : debugedit-5.0-10.fc39.s390x 21/152 Verifying : diffutils-3.10-3.fc39.s390x 22/152 Verifying : dwz-0.15-3.fc39.s390x 23/152 Verifying : ed-1.19-4.fc39.s390x 24/152 Verifying : efi-srpm-macros-5-9.fc39.noarch 25/152 Verifying : elfutils-0.189-6.fc40.s390x 26/152 Verifying : elfutils-debuginfod-client-0.189-6.fc40.s390x 27/152 Verifying : elfutils-default-yama-scope-0.189-6.fc40.noarch 28/152 Verifying : elfutils-libelf-0.189-6.fc40.s390x 29/152 Verifying : elfutils-libs-0.189-6.fc40.s390x 30/152 Verifying : fedora-gpg-keys-40-0.1.noarch 31/152 Verifying : fedora-release-40-0.7.noarch 32/152 Verifying : fedora-release-common-40-0.7.noarch 33/152 Verifying : fedora-release-identity-basic-40-0.7.noarch 34/152 Verifying : fedora-repos-40-0.1.noarch 35/152 Verifying : fedora-repos-rawhide-40-0.1.noarch 36/152 Verifying : file-5.45-1.fc40.s390x 37/152 Verifying : file-libs-5.45-1.fc40.s390x 38/152 Verifying : filesystem-3.18-6.fc39.s390x 39/152 Verifying : findutils-1:4.9.0-6.fc40.s390x 40/152 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 41/152 Verifying : forge-srpm-macros-0.1.0-1.fc40.noarch 42/152 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 43/152 Verifying : gawk-5.2.2-2.fc39.s390x 44/152 Verifying : gdbm-libs-1:1.23-4.fc39.s390x 45/152 Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 46/152 Verifying : glibc-2.38.9000-9.fc40.s390x 47/152 Verifying : glibc-common-2.38.9000-9.fc40.s390x 48/152 Verifying : glibc-gconv-extra-2.38.9000-9.fc40.s390x 49/152 Verifying : glibc-minimal-langpack-2.38.9000-9.fc40.s390x 50/152 Verifying : gmp-1:6.2.1-5.fc39.s390x 51/152 Verifying : gnat-srpm-macros-6-3.fc39.noarch 52/152 Verifying : go-srpm-macros-3.2.0-7.fc40.noarch 53/152 Verifying : grep-3.11-5.fc40.s390x 54/152 Verifying : gzip-1.12-6.fc39.s390x 55/152 Verifying : info-7.0.3-3.fc39.s390x 56/152 Verifying : jansson-2.13.1-7.fc39.s390x 57/152 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 58/152 Verifying : keyutils-libs-1.6.1-7.fc39.s390x 59/152 Verifying : krb5-libs-1.21.2-1.fc40.s390x 60/152 Verifying : libacl-2.3.1-9.fc40.s390x 61/152 Verifying : libarchive-3.7.2-1.fc40.s390x 62/152 Verifying : libattr-2.5.1-9.fc40.s390x 63/152 Verifying : libblkid-2.39.2-1.fc40.s390x 64/152 Verifying : libbrotli-1.1.0-1.fc40.s390x 65/152 Verifying : libcap-2.48-7.fc39.s390x 66/152 Verifying : libcap-ng-0.8.3-8.fc40.s390x 67/152 Verifying : libcom_err-1.47.0-2.fc39.s390x 68/152 Verifying : libcurl-8.3.0-1.fc40.s390x 69/152 Verifying : libdb-5.3.28-58.fc40.s390x 70/152 Verifying : libeconf-0.5.2-1.fc40.s390x 71/152 Verifying : libevent-2.1.12-9.fc39.s390x 72/152 Verifying : libfdisk-2.39.2-1.fc40.s390x 73/152 Verifying : libffi-3.4.4-4.fc39.s390x 74/152 Verifying : libgcc-13.2.1-3.fc40.s390x 75/152 Verifying : libgomp-13.2.1-3.fc40.s390x 76/152 Verifying : libidn2-2.3.4-3.fc39.s390x 77/152 Verifying : libmount-2.39.2-1.fc40.s390x 78/152 Verifying : libnghttp2-1.56.0-1.fc40.s390x 79/152 Verifying : libnsl2-2.0.0-6.fc39.s390x 80/152 Verifying : libpkgconf-1.9.5-2.fc39.s390x 81/152 Verifying : libpsl-0.21.2-4.fc39.s390x 82/152 Verifying : libpwquality-1.4.5-6.fc39.s390x 83/152 Verifying : libselinux-3.5-5.fc39.s390x 84/152 Verifying : libsemanage-3.5-4.fc39.s390x 85/152 Verifying : libsepol-3.5-2.fc39.s390x 86/152 Verifying : libsigsegv-2.14-5.fc39.s390x 87/152 Verifying : libsmartcols-2.39.2-1.fc40.s390x 88/152 Verifying : libssh-0.10.5-2.fc39.s390x 89/152 Verifying : libssh-config-0.10.5-2.fc39.noarch 90/152 Verifying : libstdc++-13.2.1-3.fc40.s390x 91/152 Verifying : libtasn1-4.19.0-3.fc39.s390x 92/152 Verifying : libtirpc-1.3.3-1.rc2.fc39.s390x 93/152 Verifying : libunistring-1.1-5.fc40.s390x 94/152 Verifying : libutempter-1.2.1-10.fc39.s390x 95/152 Verifying : libuuid-2.39.2-1.fc40.s390x 96/152 Verifying : libverto-0.3.2-6.fc39.s390x 97/152 Verifying : libxcrypt-4.4.36-2.fc39.s390x 98/152 Verifying : libxml2-2.11.5-1.fc40.s390x 99/152 Verifying : libzstd-1.5.5-4.fc39.s390x 100/152 Verifying : lua-libs-5.4.6-3.fc39.s390x 101/152 Verifying : lua-srpm-macros-1-9.fc39.noarch 102/152 Verifying : lz4-libs-1.9.4-4.fc39.s390x 103/152 Verifying : mpfr-4.2.0-3.fc39.s390x 104/152 Verifying : ncurses-base-6.4-7.20230520.fc40.noarch 105/152 Verifying : ncurses-libs-6.4-7.20230520.fc40.s390x 106/152 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 107/152 Verifying : openblas-srpm-macros-2-14.fc39.noarch 108/152 Verifying : openldap-2.6.6-1.fc39.s390x 109/152 Verifying : openssl-libs-1:3.1.1-4.fc40.s390x 110/152 Verifying : p11-kit-0.25.0-2.fc39.s390x 111/152 Verifying : p11-kit-trust-0.25.0-2.fc39.s390x 112/152 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 113/152 Verifying : pam-1.5.3-2.fc39.s390x 114/152 Verifying : pam-libs-1.5.3-2.fc39.s390x 115/152 Verifying : patch-2.7.6-22.fc39.s390x 116/152 Verifying : pcre2-10.42-1.fc39.2.s390x 117/152 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 118/152 Verifying : perl-srpm-macros-1-51.fc39.noarch 119/152 Verifying : pkgconf-1.9.5-2.fc39.s390x 120/152 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 121/152 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.s390x 122/152 Verifying : popt-1.19-3.fc39.s390x 123/152 Verifying : publicsuffix-list-dafsa-20230812-1.fc40.noarch 124/152 Verifying : pyproject-srpm-macros-1.9.0-2.fc39.noarch 125/152 Verifying : python-srpm-macros-3.12-4.fc40.noarch 126/152 Verifying : qt5-srpm-macros-5.15.10-2.fc39.noarch 127/152 Verifying : qt6-srpm-macros-6.5.2-3.fc40.noarch 128/152 Verifying : readline-8.2-4.fc39.s390x 129/152 Verifying : redhat-rpm-config-266-1.fc40.noarch 130/152 Verifying : rpm-4.18.99-1.fc40.s390x 131/152 Verifying : rpm-build-4.18.99-1.fc40.s390x 132/152 Verifying : rpm-build-libs-4.18.99-1.fc40.s390x 133/152 Verifying : rpm-libs-4.18.99-1.fc40.s390x 134/152 Verifying : rpm-sequoia-1.5.0-1.fc40.s390x 135/152 Verifying : rust-srpm-macros-24-5.fc40.noarch 136/152 Verifying : sed-4.8-14.fc39.s390x 137/152 Verifying : setup-2.14.4-1.fc39.noarch 138/152 Verifying : shadow-utils-2:4.14.0-1.fc40.s390x 139/152 Verifying : sqlite-libs-3.43.1-1.fc40.s390x 140/152 Verifying : systemd-libs-254.2-7.fc40.s390x 141/152 Verifying : tar-2:1.35-2.fc40.s390x 142/152 Verifying : unzip-6.0-62.fc39.s390x 143/152 Verifying : util-linux-2.39.2-1.fc40.s390x 144/152 Verifying : util-linux-core-2.39.2-1.fc40.s390x 145/152 Verifying : which-2.21-40.fc39.s390x 146/152 Verifying : xxhash-libs-0.8.2-1.fc39.s390x 147/152 Verifying : xz-5.4.4-1.fc39.s390x 148/152 Verifying : xz-libs-5.4.4-1.fc39.s390x 149/152 Verifying : zip-3.0-39.fc40.s390x 150/152 Verifying : zlib-1.2.13-4.fc39.s390x 151/152 Verifying : zstd-1.5.5-4.fc39.s390x 152/152 Installed: alternatives-1.25-1.fc39.s390x ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.s390x authselect-1.4.2-3.fc39.s390x authselect-libs-1.4.2-3.fc39.s390x basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.s390x binutils-2.41-5.fc40.s390x binutils-gold-2.41-5.fc40.s390x bzip2-1.0.8-16.fc39.s390x bzip2-libs-1.0.8-16.fc39.s390x ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.s390x coreutils-common-9.4-1.fc40.s390x cpio-2.14-4.fc39.s390x cracklib-2.9.11-2.fc39.s390x crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.3.0-1.fc40.s390x cyrus-sasl-lib-2.1.28-11.fc39.s390x debugedit-5.0-10.fc39.s390x diffutils-3.10-3.fc39.s390x dwz-0.15-3.fc39.s390x ed-1.19-4.fc39.s390x efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.s390x elfutils-debuginfod-client-0.189-6.fc40.s390x elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.s390x elfutils-libs-0.189-6.fc40.s390x fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.7.noarch fedora-release-common-40-0.7.noarch fedora-release-identity-basic-40-0.7.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.s390x file-libs-5.45-1.fc40.s390x filesystem-3.18-6.fc39.s390x findutils-1:4.9.0-6.fc40.s390x fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.s390x gdb-minimal-13.2-9.fc40.s390x gdbm-libs-1:1.23-4.fc39.s390x ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38.9000-9.fc40.s390x glibc-common-2.38.9000-9.fc40.s390x glibc-gconv-extra-2.38.9000-9.fc40.s390x glibc-minimal-langpack-2.38.9000-9.fc40.s390x gmp-1:6.2.1-5.fc39.s390x gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch grep-3.11-5.fc40.s390x gzip-1.12-6.fc39.s390x info-7.0.3-3.fc39.s390x jansson-2.13.1-7.fc39.s390x kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.s390x krb5-libs-1.21.2-1.fc40.s390x libacl-2.3.1-9.fc40.s390x libarchive-3.7.2-1.fc40.s390x libattr-2.5.1-9.fc40.s390x libblkid-2.39.2-1.fc40.s390x libbrotli-1.1.0-1.fc40.s390x libcap-2.48-7.fc39.s390x libcap-ng-0.8.3-8.fc40.s390x libcom_err-1.47.0-2.fc39.s390x libcurl-8.3.0-1.fc40.s390x libdb-5.3.28-58.fc40.s390x libeconf-0.5.2-1.fc40.s390x libevent-2.1.12-9.fc39.s390x libfdisk-2.39.2-1.fc40.s390x libffi-3.4.4-4.fc39.s390x libgcc-13.2.1-3.fc40.s390x libgomp-13.2.1-3.fc40.s390x libidn2-2.3.4-3.fc39.s390x libmount-2.39.2-1.fc40.s390x libnghttp2-1.56.0-1.fc40.s390x libnsl2-2.0.0-6.fc39.s390x libpkgconf-1.9.5-2.fc39.s390x libpsl-0.21.2-4.fc39.s390x libpwquality-1.4.5-6.fc39.s390x libselinux-3.5-5.fc39.s390x libsemanage-3.5-4.fc39.s390x libsepol-3.5-2.fc39.s390x libsigsegv-2.14-5.fc39.s390x libsmartcols-2.39.2-1.fc40.s390x libssh-0.10.5-2.fc39.s390x libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-3.fc40.s390x libtasn1-4.19.0-3.fc39.s390x libtirpc-1.3.3-1.rc2.fc39.s390x libunistring-1.1-5.fc40.s390x libutempter-1.2.1-10.fc39.s390x libuuid-2.39.2-1.fc40.s390x libverto-0.3.2-6.fc39.s390x libxcrypt-4.4.36-2.fc39.s390x libxml2-2.11.5-1.fc40.s390x libzstd-1.5.5-4.fc39.s390x lua-libs-5.4.6-3.fc39.s390x lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.s390x mpfr-4.2.0-3.fc39.s390x ncurses-base-6.4-7.20230520.fc40.noarch ncurses-libs-6.4-7.20230520.fc40.s390x ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.s390x openssl-libs-1:3.1.1-4.fc40.s390x p11-kit-0.25.0-2.fc39.s390x p11-kit-trust-0.25.0-2.fc39.s390x package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.s390x pam-libs-1.5.3-2.fc39.s390x patch-2.7.6-22.fc39.s390x pcre2-10.42-1.fc39.2.s390x pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.s390x pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.s390x popt-1.19-3.fc39.s390x publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-3.fc40.noarch readline-8.2-4.fc39.s390x redhat-rpm-config-266-1.fc40.noarch rpm-4.18.99-1.fc40.s390x rpm-build-4.18.99-1.fc40.s390x rpm-build-libs-4.18.99-1.fc40.s390x rpm-libs-4.18.99-1.fc40.s390x rpm-sequoia-1.5.0-1.fc40.s390x rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.s390x setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-1.fc40.s390x sqlite-libs-3.43.1-1.fc40.s390x systemd-libs-254.2-7.fc40.s390x tar-2:1.35-2.fc40.s390x unzip-6.0-62.fc39.s390x util-linux-2.39.2-1.fc40.s390x util-linux-core-2.39.2-1.fc40.s390x which-2.21-40.fc39.s390x xxhash-libs-0.8.2-1.fc39.s390x xz-5.4.4-1.fc39.s390x xz-libs-5.4.4-1.fc39.s390x zip-3.0-39.fc40.s390x zlib-1.2.13-4.fc39.s390x zstd-1.5.5-4.fc39.s390x Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.s390x ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.s390x authselect-1.4.2-3.fc39.s390x authselect-libs-1.4.2-3.fc39.s390x basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.s390x binutils-2.41-5.fc40.s390x binutils-gold-2.41-5.fc40.s390x bzip2-1.0.8-16.fc39.s390x bzip2-libs-1.0.8-16.fc39.s390x ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.s390x coreutils-common-9.4-1.fc40.s390x cpio-2.14-4.fc39.s390x cracklib-2.9.11-2.fc39.s390x crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.3.0-1.fc40.s390x cyrus-sasl-lib-2.1.28-11.fc39.s390x debugedit-5.0-10.fc39.s390x diffutils-3.10-3.fc39.s390x dwz-0.15-3.fc39.s390x ed-1.19-4.fc39.s390x efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.s390x elfutils-debuginfod-client-0.189-6.fc40.s390x elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.s390x elfutils-libs-0.189-6.fc40.s390x fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.7.noarch fedora-release-common-40-0.7.noarch fedora-release-identity-basic-40-0.7.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.s390x file-libs-5.45-1.fc40.s390x filesystem-3.18-6.fc39.s390x findutils-4.9.0-6.fc40.s390x fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.s390x gdb-minimal-13.2-9.fc40.s390x gdbm-libs-1.23-4.fc39.s390x ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38.9000-9.fc40.s390x glibc-common-2.38.9000-9.fc40.s390x glibc-gconv-extra-2.38.9000-9.fc40.s390x glibc-minimal-langpack-2.38.9000-9.fc40.s390x gmp-6.2.1-5.fc39.s390x gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch grep-3.11-5.fc40.s390x gzip-1.12-6.fc39.s390x info-7.0.3-3.fc39.s390x jansson-2.13.1-7.fc39.s390x kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.s390x krb5-libs-1.21.2-1.fc40.s390x libacl-2.3.1-9.fc40.s390x libarchive-3.7.2-1.fc40.s390x libattr-2.5.1-9.fc40.s390x libblkid-2.39.2-1.fc40.s390x libbrotli-1.1.0-1.fc40.s390x libcap-2.48-7.fc39.s390x libcap-ng-0.8.3-8.fc40.s390x libcom_err-1.47.0-2.fc39.s390x libcurl-8.3.0-1.fc40.s390x libdb-5.3.28-58.fc40.s390x libeconf-0.5.2-1.fc40.s390x libevent-2.1.12-9.fc39.s390x libfdisk-2.39.2-1.fc40.s390x libffi-3.4.4-4.fc39.s390x libgcc-13.2.1-3.fc40.s390x libgomp-13.2.1-3.fc40.s390x libidn2-2.3.4-3.fc39.s390x libmount-2.39.2-1.fc40.s390x libnghttp2-1.56.0-1.fc40.s390x libnsl2-2.0.0-6.fc39.s390x libpkgconf-1.9.5-2.fc39.s390x libpsl-0.21.2-4.fc39.s390x libpwquality-1.4.5-6.fc39.s390x libselinux-3.5-5.fc39.s390x libsemanage-3.5-4.fc39.s390x libsepol-3.5-2.fc39.s390x libsigsegv-2.14-5.fc39.s390x libsmartcols-2.39.2-1.fc40.s390x libssh-0.10.5-2.fc39.s390x libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-3.fc40.s390x 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publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-3.fc40.noarch readline-8.2-4.fc39.s390x redhat-rpm-config-266-1.fc40.noarch rpm-4.18.99-1.fc40.s390x rpm-build-4.18.99-1.fc40.s390x rpm-build-libs-4.18.99-1.fc40.s390x rpm-libs-4.18.99-1.fc40.s390x rpm-sequoia-1.5.0-1.fc40.s390x rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.s390x setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-1.fc40.s390x sqlite-libs-3.43.1-1.fc40.s390x systemd-libs-254.2-7.fc40.s390x tar-1.35-2.fc40.s390x unzip-6.0-62.fc39.s390x util-linux-2.39.2-1.fc40.s390x util-linux-core-2.39.2-1.fc40.s390x which-2.21-40.fc39.s390x xxhash-libs-0.8.2-1.fc39.s390x xz-5.4.4-1.fc39.s390x xz-libs-5.4.4-1.fc39.s390x zip-3.0-39.fc40.s390x zlib-1.2.13-4.fc39.s390x zstd-1.5.5-4.fc39.s390x Start: buildsrpm Start: rpmbuild -bs warning: %patchN is deprecated (3 usages found), use %patch N (or %patch -P N) Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1689724800 Wrote: /builddir/build/SRPMS/avogadro2-libs-1.97.0-8.fc40.src.rpm RPM build warnings: %patchN is deprecated (3 usages found), use %patch N (or %patch -P N) Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-s390x-1695149272.169511/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-s390x-1695149272.169511/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-s390x-1695149272.169511/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-pn0i1v94/avogadro2-libs/avogadro2-libs.spec) Config(child) 3 minutes 42 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/avogadro2-libs-1.97.0-8.fc40.src.rpm) Config(fedora-rawhide-s390x) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1695149272.169511/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1695149272.169511/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1695149272.169511/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.18.99-1.fc40.s390x rpm-sequoia-1.5.0-1.fc40.s390x python3-dnf-4.16.2-4.fc40.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch yum-4.16.2-4.fc40.noarch Start: build phase for avogadro2-libs-1.97.0-8.fc40.src.rpm Start: build setup for avogadro2-libs-1.97.0-8.fc40.src.rpm warning: %patchN is deprecated (3 usages found), use %patch N (or %patch -P N) Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1689724800 Wrote: /builddir/build/SRPMS/avogadro2-libs-1.97.0-8.fc40.src.rpm RPM build warnings: %patchN is deprecated (3 usages found), use %patch N (or %patch -P N) No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 253 B/s | 1.5 kB 00:06 Additional repo http_kojipkgs_fedoraproject_org 4.5 kB/s | 3.8 kB 00:00 fedora 1.1 kB/s | 6.1 kB 00:05 Dependencies resolved. =============================================================================================================================================== Package Arch Version Repository Size =============================================================================================================================================== Installing: boost-devel s390x 1.81.0-9.fc40 copr_base 12 M chrpath s390x 0.16-21.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30 k cmake s390x 3.27.4-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.8 M doxygen s390x 2:1.9.8-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.6 M eigen3-devel noarch 3.4.0-12.fc39 copr_base 1.1 M gcc s390x 13.2.1-3.fc40 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xkeyboard-config noarch 2.39-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 907 k xml-common noarch 0.6.3-61.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 31 k xorg-x11-proto-devel noarch 2023.2-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 263 k zlib-devel s390x 1.2.13-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 44 k Transaction Summary =============================================================================================================================================== Install 327 Packages Total download size: 373 M Installed size: 1.6 G Downloading Packages: (1/327): boost-atomic-1.81.0-9.fc40.s390x.rpm 394 kB/s | 19 kB 00:00 (2/327): boost-chrono-1.81.0-9.fc40.s390x.rpm 206 kB/s | 26 kB 00:00 (3/327): boost-container-1.81.0-9.fc40.s390x.rp 544 kB/s | 41 kB 00:00 (4/327): boost-1.81.0-9.fc40.s390x.rpm 113 kB/s | 14 kB 00:00 (5/327): boost-context-1.81.0-9.fc40.s390x.rpm 830 kB/s | 17 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boost-program-options-1.81.0-9.fc40.s 5.8 MB/s | 111 kB 00:00 (21/327): boost-python3-1.81.0-9.fc40.s390x.rpm 4.8 MB/s | 95 kB 00:00 (22/327): boost-serialization-1.81.0-9.fc40.s39 6.9 MB/s | 136 kB 00:00 (23/327): boost-random-1.81.0-9.fc40.s390x.rpm 611 kB/s | 24 kB 00:00 (24/327): boost-system-1.81.0-9.fc40.s390x.rpm 864 kB/s | 16 kB 00:00 (25/327): boost-test-1.81.0-9.fc40.s390x.rpm 12 MB/s | 250 kB 00:00 (26/327): boost-thread-1.81.0-9.fc40.s390x.rpm 3.0 MB/s | 58 kB 00:00 (27/327): boost-timer-1.81.0-9.fc40.s390x.rpm 1.3 MB/s | 24 kB 00:00 (28/327): boost-type_erasure-1.81.0-9.fc40.s390 1.7 MB/s | 33 kB 00:00 (29/327): boost-wave-1.81.0-9.fc40.s390x.rpm 11 MB/s | 246 kB 00:00 (30/327): boost-regex-1.81.0-9.fc40.s390x.rpm 648 kB/s | 123 kB 00:00 (31/327): flexiblas-3.3.1-5.fc39.s390x.rpm 1.7 MB/s | 33 kB 00:00 (32/327): flexiblas-netlib-3.3.1-5.fc39.s390x.r 70 MB/s | 3.6 MB 00:00 (33/327): flexiblas-openblas-openmp-3.3.1-5.fc3 94 kB/s | 18 kB 00:00 (34/327): 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libubsan-13.2.1-3.fc40.s390x 176/327 Verifying : libuv-1:1.46.0-2.fc39.s390x 177/327 Verifying : libwacom-2.8.0-1.fc40.s390x 178/327 Verifying : libwacom-data-2.8.0-1.fc40.noarch 179/327 Verifying : libwayland-client-1.22.0-2.fc39.s390x 180/327 Verifying : libwayland-server-1.22.0-2.fc39.s390x 181/327 Verifying : libwebp-1.3.2-1.fc40.s390x 182/327 Verifying : libxcb-1.13.1-12.fc39.s390x 183/327 Verifying : libxcb-devel-1.13.1-12.fc39.s390x 184/327 Verifying : libxcrypt-devel-4.4.36-2.fc39.s390x 185/327 Verifying : libxkbcommon-1.5.0-3.fc39.s390x 186/327 Verifying : libxkbcommon-x11-1.5.0-3.fc39.s390x 187/327 Verifying : libxshmfence-1.3-13.fc39.s390x 188/327 Verifying : llvm-libs-17.0.0~rc4-1.fc40.s390x 189/327 Verifying : llvm16-libs-16.0.6-5.fc40.s390x 190/327 Verifying : make-1:4.4.1-2.fc39.s390x 191/327 Verifying : mesa-libEGL-23.2.0~rc3-1.fc40.s390x 192/327 Verifying : mesa-libEGL-devel-23.2.0~rc3-1.fc40.s390x 193/327 Verifying : mesa-libGL-23.2.0~rc3-1.fc40.s390x 194/327 Verifying : mesa-libGLU-9.0.3-1.fc39.s390x 195/327 Verifying : mesa-libGLU-devel-9.0.3-1.fc39.s390x 196/327 Verifying : mesa-libgbm-23.2.0~rc3-1.fc40.s390x 197/327 Verifying : mesa-libglapi-23.2.0~rc3-1.fc40.s390x 198/327 Verifying : mmtf-cpp-devel-1.1.0-3.fc39.s390x 199/327 Verifying : mpdecimal-2.5.1-7.fc39.s390x 200/327 Verifying : msgpack-3.1.0-13.fc39.s390x 201/327 Verifying : msgpack-devel-3.1.0-13.fc39.s390x 202/327 Verifying : mtdev-1.1.6-6.fc39.s390x 203/327 Verifying : ncurses-6.4-7.20230520.fc40.s390x 204/327 Verifying : netpbm-11.02.00-2.fc39.s390x 205/327 Verifying : nettle-3.9.1-2.fc39.s390x 206/327 Verifying : nspr-4.35.0-13.fc40.s390x 207/327 Verifying : nss-3.93.0-2.fc40.s390x 208/327 Verifying : nss-softokn-3.93.0-2.fc40.s390x 209/327 Verifying : nss-softokn-freebl-3.93.0-2.fc40.s390x 210/327 Verifying : nss-sysinit-3.93.0-2.fc40.s390x 211/327 Verifying : nss-util-3.93.0-2.fc40.s390x 212/327 Verifying : openjpeg2-2.5.0-4.fc39.s390x 213/327 Verifying : openssl-devel-1:3.1.1-4.fc40.s390x 214/327 Verifying : pango-1.51.0-1.fc40.s390x 215/327 Verifying : pcre2-utf16-10.42-1.fc39.2.s390x 216/327 Verifying : perl-AutoLoader-5.74-500.fc39.noarch 217/327 Verifying : perl-B-1.88-500.fc39.s390x 218/327 Verifying : perl-Carp-1.54-500.fc39.noarch 219/327 Verifying : perl-Class-Struct-0.68-500.fc39.noarch 220/327 Verifying : perl-Data-Dumper-2.188-501.fc39.s390x 221/327 Verifying : perl-Digest-1.20-500.fc39.noarch 222/327 Verifying : perl-Digest-MD5-2.58-500.fc39.s390x 223/327 Verifying : perl-DynaLoader-1.54-500.fc39.s390x 224/327 Verifying : perl-Encode-4:3.19-500.fc39.s390x 225/327 Verifying : perl-English-1.11-500.fc39.noarch 226/327 Verifying : perl-Errno-1.37-500.fc39.s390x 227/327 Verifying : perl-Exporter-5.77-500.fc39.noarch 228/327 Verifying : perl-Fcntl-1.15-500.fc39.s390x 229/327 Verifying : perl-File-Basename-2.86-500.fc39.noarch 230/327 Verifying : perl-File-Find-1.43-500.fc39.noarch 231/327 Verifying : perl-File-Path-2.18-500.fc39.noarch 232/327 Verifying : perl-File-Temp-1:0.231.100-500.fc39.noarch 233/327 Verifying : perl-File-stat-1.13-500.fc39.noarch 234/327 Verifying : perl-FileHandle-2.05-500.fc39.noarch 235/327 Verifying : perl-Getopt-Long-1:2.54-500.fc39.noarch 236/327 Verifying : perl-Getopt-Std-1.13-500.fc39.noarch 237/327 Verifying : perl-HTTP-Tiny-0.088-3.fc39.noarch 238/327 Verifying : perl-IO-1.52-500.fc39.s390x 239/327 Verifying : perl-IO-Socket-IP-0.42-1.fc39.noarch 240/327 Verifying : perl-IO-Socket-SSL-2.083-3.fc39.noarch 241/327 Verifying : perl-IPC-Open3-1.22-500.fc39.noarch 242/327 Verifying : perl-MIME-Base64-3.16-500.fc39.s390x 243/327 Verifying : perl-Mozilla-CA-20230821-1.fc40.noarch 244/327 Verifying : perl-Net-SSLeay-1.92-10.fc39.s390x 245/327 Verifying : perl-POSIX-2.13-500.fc39.s390x 246/327 Verifying : perl-PathTools-3.89-500.fc39.s390x 247/327 Verifying : perl-Pod-Escapes-1:1.07-501.fc40.noarch 248/327 Verifying : perl-Pod-Perldoc-3.28.01-501.fc39.noarch 249/327 Verifying : perl-Pod-Simple-1:3.45-4.fc39.noarch 250/327 Verifying : perl-Pod-Usage-4:2.03-500.fc39.noarch 251/327 Verifying : perl-Scalar-List-Utils-5:1.63-500.fc39.s390x 252/327 Verifying : perl-SelectSaver-1.02-500.fc39.noarch 253/327 Verifying : perl-Socket-4:2.037-3.fc39.s390x 254/327 Verifying : perl-Storable-1:3.32-500.fc39.s390x 255/327 Verifying : perl-Symbol-1.09-500.fc39.noarch 256/327 Verifying : perl-Term-ANSIColor-5.01-501.fc39.noarch 257/327 Verifying : perl-Term-Cap-1.18-500.fc39.noarch 258/327 Verifying : perl-Text-ParseWords-3.31-500.fc39.noarch 259/327 Verifying : perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch 260/327 Verifying : perl-Time-Local-2:1.350-3.fc39.noarch 261/327 Verifying : perl-URI-5.21-1.fc40.noarch 262/327 Verifying : perl-base-2.27-500.fc39.noarch 263/327 Verifying : perl-constant-1.33-501.fc39.noarch 264/327 Verifying : perl-if-0.61.000-500.fc39.noarch 265/327 Verifying : perl-interpreter-4:5.38.0-500.fc39.s390x 266/327 Verifying : perl-libnet-3.15-501.fc39.noarch 267/327 Verifying : perl-libs-4:5.38.0-500.fc39.s390x 268/327 Verifying : perl-locale-1.10-500.fc39.noarch 269/327 Verifying : perl-mro-1.28-500.fc39.s390x 270/327 Verifying : perl-overload-1.37-500.fc39.noarch 271/327 Verifying : perl-overloading-0.02-500.fc39.noarch 272/327 Verifying : perl-parent-1:0.241-500.fc39.noarch 273/327 Verifying : perl-podlators-1:5.01-500.fc39.noarch 274/327 Verifying : perl-vars-1.05-500.fc39.noarch 275/327 Verifying : pixman-0.42.2-2.fc39.s390x 276/327 Verifying : poppler-data-0.4.11-5.fc39.noarch 277/327 Verifying : pyproject-rpm-macros-1.9.0-2.fc39.noarch 278/327 Verifying : python-pip-wheel-23.2.1-1.fc39.noarch 279/327 Verifying : python-rpm-macros-3.12-4.fc40.noarch 280/327 Verifying : python3-3.12.0~rc2-1.fc40.s390x 281/327 Verifying : python3-devel-3.12.0~rc2-1.fc40.s390x 282/327 Verifying : python3-libs-3.12.0~rc2-1.fc40.s390x 283/327 Verifying : python3-packaging-23.1-5.fc40.noarch 284/327 Verifying : python3-rpm-generators-14-7.fc39.noarch 285/327 Verifying : python3-rpm-macros-3.12-4.fc40.noarch 286/327 Verifying : qt-settings-39.0-1.fc40.noarch 287/327 Verifying : qt5-qtbase-5.15.10-9.fc40.s390x 288/327 Verifying : qt5-qtbase-common-5.15.10-9.fc40.noarch 289/327 Verifying : qt5-qtbase-devel-5.15.10-9.fc40.s390x 290/327 Verifying : qt5-qtbase-gui-5.15.10-9.fc40.s390x 291/327 Verifying : qt5-qtdeclarative-5.15.10-2.fc39.s390x 292/327 Verifying : qt5-qtsvg-5.15.10-2.fc39.s390x 293/327 Verifying : qt5-qtsvg-devel-5.15.10-2.fc39.s390x 294/327 Verifying : qt5-rpm-macros-5.15.10-2.fc39.noarch 295/327 Verifying : rav1e-libs-0.6.6-2.fc39.s390x 296/327 Verifying : rhash-1.4.3-3.fc39.s390x 297/327 Verifying : rsvg-pixbuf-loader-2.56.92-1.fc40.s390x 298/327 Verifying : shared-mime-info-2.2-4.fc39.s390x 299/327 Verifying : svt-av1-libs-1.4.1-3.fc39.s390x 300/327 Verifying : tzdata-2023c-3.fc40.noarch 301/327 Verifying : urw-base35-bookman-fonts-20200910-18.fc39.noarch 302/327 Verifying : urw-base35-c059-fonts-20200910-18.fc39.noarch 303/327 Verifying : urw-base35-d050000l-fonts-20200910-18.fc39.noarc 304/327 Verifying : urw-base35-fonts-20200910-18.fc39.noarch 305/327 Verifying : urw-base35-fonts-common-20200910-18.fc39.noarch 306/327 Verifying : urw-base35-gothic-fonts-20200910-18.fc39.noarch 307/327 Verifying : urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39 308/327 Verifying : urw-base35-nimbus-roman-fonts-20200910-18.fc39.n 309/327 Verifying : urw-base35-nimbus-sans-fonts-20200910-18.fc39.no 310/327 Verifying : urw-base35-p052-fonts-20200910-18.fc39.noarch 311/327 Verifying : urw-base35-standard-symbols-ps-fonts-20200910-18 312/327 Verifying : urw-base35-z003-fonts-20200910-18.fc39.noarch 313/327 Verifying : vim-filesystem-2:9.0.1882-1.fc40.noarch 314/327 Verifying : vulkan-headers-1.3.261.1-2.fc40.noarch 315/327 Verifying : vulkan-loader-1.3.261.1-1.fc40.s390x 316/327 Verifying : vulkan-loader-devel-1.3.261.1-1.fc40.s390x 317/327 Verifying : xapian-core-libs-1.4.23-1.fc39.s390x 318/327 Verifying : xcb-util-0.4.1-3.fc39.s390x 319/327 Verifying : xcb-util-image-0.4.1-3.fc39.s390x 320/327 Verifying : xcb-util-keysyms-0.4.1-3.fc39.s390x 321/327 Verifying : xcb-util-renderutil-0.3.10-3.fc39.s390x 322/327 Verifying : xcb-util-wm-0.4.2-3.fc39.s390x 323/327 Verifying : xkeyboard-config-2.39-2.fc39.noarch 324/327 Verifying : xml-common-0.6.3-61.fc39.noarch 325/327 Verifying : xorg-x11-proto-devel-2023.2-3.fc40.noarch 326/327 Verifying : zlib-devel-1.2.13-4.fc39.s390x 327/327 Installed: abattis-cantarell-vf-fonts-0.301-10.fc39.noarch adobe-mappings-cmap-20230622-1.fc39.noarch adobe-mappings-cmap-deprecated-20230622-1.fc39.noarch adobe-mappings-pdf-20190401-5.fc39.noarch annobin-docs-12.26-1.fc40.noarch annobin-plugin-gcc-12.26-1.fc40.s390x avahi-libs-0.8-24.fc39.s390x boost-1.81.0-9.fc40.s390x boost-atomic-1.81.0-9.fc40.s390x boost-chrono-1.81.0-9.fc40.s390x boost-container-1.81.0-9.fc40.s390x boost-context-1.81.0-9.fc40.s390x boost-contract-1.81.0-9.fc40.s390x boost-coroutine-1.81.0-9.fc40.s390x boost-date-time-1.81.0-9.fc40.s390x boost-devel-1.81.0-9.fc40.s390x boost-fiber-1.81.0-9.fc40.s390x boost-filesystem-1.81.0-9.fc40.s390x boost-graph-1.81.0-9.fc40.s390x boost-iostreams-1.81.0-9.fc40.s390x boost-json-1.81.0-9.fc40.s390x boost-locale-1.81.0-9.fc40.s390x boost-log-1.81.0-9.fc40.s390x boost-math-1.81.0-9.fc40.s390x boost-nowide-1.81.0-9.fc40.s390x boost-numpy3-1.81.0-9.fc40.s390x boost-program-options-1.81.0-9.fc40.s390x boost-python3-1.81.0-9.fc40.s390x boost-random-1.81.0-9.fc40.s390x boost-regex-1.81.0-9.fc40.s390x boost-serialization-1.81.0-9.fc40.s390x boost-stacktrace-1.81.0-9.fc40.s390x boost-system-1.81.0-9.fc40.s390x boost-test-1.81.0-9.fc40.s390x boost-thread-1.81.0-9.fc40.s390x boost-timer-1.81.0-9.fc40.s390x boost-type_erasure-1.81.0-9.fc40.s390x boost-wave-1.81.0-9.fc40.s390x cairo-1.17.8-5.fc39.s390x cairo-gobject-1.17.8-5.fc39.s390x chrpath-0.16-21.fc39.s390x clang-libs-17.0.0~rc4-1.fc40.s390x clang-resource-filesystem-17.0.0~rc4-1.fc40.s390x clang16-libs-16.0.6-3.fc40.s390x clang16-resource-filesystem-16.0.6-3.fc40.s390x cmake-3.27.4-8.fc40.s390x cmake-data-3.27.4-8.fc40.noarch cmake-filesystem-3.27.4-8.fc40.s390x cmake-rpm-macros-3.27.4-8.fc40.noarch cpp-13.2.1-3.fc40.s390x crypto-policies-scripts-20230731-1.git5ed06e0.fc39.noarch cups-libs-1:2.4.6-6.fc40.s390x dbus-libs-1:1.14.10-1.fc40.s390x default-fonts-core-sans-4.0-9.fc40.noarch double-conversion-3.1.5-9.fc39.s390x doxygen-2:1.9.8-1.fc40.s390x duktape-2.7.0-5.fc39.s390x eigen3-devel-3.4.0-12.fc39.noarch emacs-filesystem-1:29.1-1.fc39.noarch expat-2.5.0-3.fc39.s390x flexiblas-3.3.1-5.fc39.s390x flexiblas-netlib-3.3.1-5.fc39.s390x flexiblas-openblas-openmp-3.3.1-5.fc39.s390x fontconfig-2.14.2-5.fc40.s390x fonts-filesystem-1:2.0.5-12.fc39.noarch freetype-2.13.1-2.fc39.s390x fribidi-1.0.13-2.fc39.s390x gc-8.2.2-4.fc39.s390x gcc-13.2.1-3.fc40.s390x gcc-c++-13.2.1-3.fc40.s390x gcc-gfortran-13.2.1-3.fc40.s390x gcc-plugin-annobin-13.2.1-3.fc40.s390x gd-2.3.3-12.fc39.s390x gdk-pixbuf2-2.42.10-5.fc39.s390x gl-manpages-1.1-29.20190306.fc40.noarch glew-devel-2.2.0-5.fc39.s390x glib2-2.78.0-2.fc40.s390x glibc-devel-2.38.9000-9.fc40.s390x glibc-headers-s390-2.38.9000-9.fc40.noarch glx-utils-9.0.0-3.fc39.s390x gnutls-3.8.1-1.fc40.s390x google-droid-sans-fonts-20200215-17.fc40.noarch google-noto-fonts-common-20230801-3.fc40.noarch google-noto-sans-vf-fonts-20230801-3.fc40.noarch graphite2-1.3.14-12.fc39.s390x graphviz-8.1.0-6.fc40.s390x groff-base-1.23.0-2.fc39.s390x gts-0.7.6-46.20121130.fc39.s390x guile22-2.2.7-9.fc39.s390x harfbuzz-8.2.0-1.fc40.s390x hdf5-1.12.1-12.fc39.s390x hdf5-devel-1.12.1-12.fc39.s390x highway-1.0.7-1.fc40.s390x inchi-libs-1.0.6-7.fc39.s390x jbig2dec-libs-0.19-10.fc39.s390x jbigkit-libs-2.1-26.fc39.s390x jsoncpp-1.9.5-5.fc39.s390x jsoncpp-devel-1.9.5-5.fc39.s390x kernel-headers-6.6.0-0.rc2.git0.1.fc40.s390x lasi-1.1.3-11.fc39.s390x lcms2-2.15-2.fc39.s390x libGLEW-2.2.0-5.fc39.s390x libICE-1.0.10-12.fc40.s390x libSM-1.2.3-14.fc40.s390x libX11-1.8.6-3.fc40.s390x libX11-common-1.8.6-3.fc40.noarch libX11-devel-1.8.6-3.fc40.s390x libX11-xcb-1.8.6-3.fc40.s390x libXau-1.0.11-4.fc40.s390x libXau-devel-1.0.11-4.fc40.s390x libXext-1.3.5-3.fc39.s390x libXfixes-6.0.0-7.fc40.s390x libXft-2.3.8-4.fc40.s390x libXpm-3.5.15-5.fc40.s390x libXrender-0.9.11-4.fc40.s390x libXt-1.2.1-6.fc40.s390x libXxf86vm-1.1.5-4.fc40.s390x libaec-1.0.6-5.fc39.s390x libaec-devel-1.0.6-5.fc39.s390x libaom-3.7.0-1.fc40.s390x libarchive-devel-3.7.2-1.fc40.s390x libasan-13.2.1-3.fc40.s390x libatomic-13.2.1-3.fc40.s390x libavif-0.11.1-11.fc39.s390x libb2-0.98.1-9.fc39.s390x libdatrie-0.2.13-7.fc39.s390x libdav1d-1.2.1-2.fc39.s390x libdrm-2.4.114-3.fc39.s390x libedit-3.1-48.20230828cvs.fc40.s390x libevdev-1.13.1-2.fc39.s390x libgfortran-13.2.1-3.fc40.s390x libglvnd-1:1.7.0-1.fc40.s390x libglvnd-core-devel-1:1.7.0-1.fc40.s390x libglvnd-devel-1:1.7.0-1.fc40.s390x libglvnd-egl-1:1.7.0-1.fc40.s390x libglvnd-gles-1:1.7.0-1.fc40.s390x libglvnd-glx-1:1.7.0-1.fc40.s390x libglvnd-opengl-1:1.7.0-1.fc40.s390x libgs-10.01.2-3.fc39.s390x libgudev-238-2.fc39.s390x libicu-73.2-2.fc39.s390x libicu-devel-73.2-2.fc39.s390x libijs-0.35-19.fc39.s390x libimagequant-4.0.1-5.fc39.s390x libinput-1.24.0-1.fc40.s390x libjpeg-turbo-2.1.4-3.fc39.s390x libjxl-1:0.8.2-3.fc40.s390x liblerc-4.0.0-4.fc39.s390x libmpc-1.3.1-3.fc39.s390x libpaper-1:2.1.1-1.fc39.s390x libpng-2:1.6.37-15.fc39.s390x libproxy-0.5.3-2.fc39.s390x librsvg2-2.56.92-1.fc40.s390x libstdc++-devel-13.2.1-3.fc40.s390x libthai-0.1.29-6.fc39.s390x libtiff-4.4.0-8.fc40.s390x libtool-ltdl-2.4.7-8.fc40.s390x libubsan-13.2.1-3.fc40.s390x libuv-1:1.46.0-2.fc39.s390x libwacom-2.8.0-1.fc40.s390x libwacom-data-2.8.0-1.fc40.noarch libwayland-client-1.22.0-2.fc39.s390x libwayland-server-1.22.0-2.fc39.s390x libwebp-1.3.2-1.fc40.s390x libxcb-1.13.1-12.fc39.s390x libxcb-devel-1.13.1-12.fc39.s390x libxcrypt-devel-4.4.36-2.fc39.s390x libxkbcommon-1.5.0-3.fc39.s390x libxkbcommon-x11-1.5.0-3.fc39.s390x libxshmfence-1.3-13.fc39.s390x llvm-libs-17.0.0~rc4-1.fc40.s390x llvm16-libs-16.0.6-5.fc40.s390x make-1:4.4.1-2.fc39.s390x mesa-libEGL-23.2.0~rc3-1.fc40.s390x mesa-libEGL-devel-23.2.0~rc3-1.fc40.s390x mesa-libGL-23.2.0~rc3-1.fc40.s390x mesa-libGLU-9.0.3-1.fc39.s390x mesa-libGLU-devel-9.0.3-1.fc39.s390x mesa-libgbm-23.2.0~rc3-1.fc40.s390x mesa-libglapi-23.2.0~rc3-1.fc40.s390x mmtf-cpp-devel-1.1.0-3.fc39.s390x mpdecimal-2.5.1-7.fc39.s390x msgpack-3.1.0-13.fc39.s390x msgpack-devel-3.1.0-13.fc39.s390x mtdev-1.1.6-6.fc39.s390x ncurses-6.4-7.20230520.fc40.s390x netpbm-11.02.00-2.fc39.s390x nettle-3.9.1-2.fc39.s390x nspr-4.35.0-13.fc40.s390x nss-3.93.0-2.fc40.s390x nss-softokn-3.93.0-2.fc40.s390x nss-softokn-freebl-3.93.0-2.fc40.s390x nss-sysinit-3.93.0-2.fc40.s390x nss-util-3.93.0-2.fc40.s390x openbabel-devel-3.1.1-21.fc39.s390x openbabel-libs-3.1.1-21.fc39.s390x openblas-0.3.23-1.fc39.s390x openblas-openmp-0.3.23-1.fc39.s390x openjpeg2-2.5.0-4.fc39.s390x openssl-devel-1:3.1.1-4.fc40.s390x pango-1.51.0-1.fc40.s390x pcre2-utf16-10.42-1.fc39.2.s390x perl-AutoLoader-5.74-500.fc39.noarch perl-B-1.88-500.fc39.s390x perl-Carp-1.54-500.fc39.noarch perl-Class-Struct-0.68-500.fc39.noarch perl-Data-Dumper-2.188-501.fc39.s390x perl-Digest-1.20-500.fc39.noarch perl-Digest-MD5-2.58-500.fc39.s390x perl-DynaLoader-1.54-500.fc39.s390x perl-Encode-4:3.19-500.fc39.s390x perl-English-1.11-500.fc39.noarch perl-Errno-1.37-500.fc39.s390x perl-Exporter-5.77-500.fc39.noarch perl-Fcntl-1.15-500.fc39.s390x perl-File-Basename-2.86-500.fc39.noarch perl-File-Find-1.43-500.fc39.noarch perl-File-Path-2.18-500.fc39.noarch perl-File-Temp-1:0.231.100-500.fc39.noarch perl-File-stat-1.13-500.fc39.noarch perl-FileHandle-2.05-500.fc39.noarch perl-Getopt-Long-1:2.54-500.fc39.noarch perl-Getopt-Std-1.13-500.fc39.noarch perl-HTTP-Tiny-0.088-3.fc39.noarch perl-IO-1.52-500.fc39.s390x perl-IO-Socket-IP-0.42-1.fc39.noarch perl-IO-Socket-SSL-2.083-3.fc39.noarch perl-IPC-Open3-1.22-500.fc39.noarch perl-MIME-Base64-3.16-500.fc39.s390x perl-Mozilla-CA-20230821-1.fc40.noarch perl-Net-SSLeay-1.92-10.fc39.s390x perl-POSIX-2.13-500.fc39.s390x perl-PathTools-3.89-500.fc39.s390x perl-Pod-Escapes-1:1.07-501.fc40.noarch perl-Pod-Perldoc-3.28.01-501.fc39.noarch perl-Pod-Simple-1:3.45-4.fc39.noarch perl-Pod-Usage-4:2.03-500.fc39.noarch perl-Scalar-List-Utils-5:1.63-500.fc39.s390x perl-SelectSaver-1.02-500.fc39.noarch perl-Socket-4:2.037-3.fc39.s390x perl-Storable-1:3.32-500.fc39.s390x perl-Symbol-1.09-500.fc39.noarch perl-Term-ANSIColor-5.01-501.fc39.noarch perl-Term-Cap-1.18-500.fc39.noarch perl-Text-ParseWords-3.31-500.fc39.noarch perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch perl-Time-Local-2:1.350-3.fc39.noarch perl-URI-5.21-1.fc40.noarch perl-base-2.27-500.fc39.noarch perl-constant-1.33-501.fc39.noarch perl-if-0.61.000-500.fc39.noarch perl-interpreter-4:5.38.0-500.fc39.s390x perl-libnet-3.15-501.fc39.noarch perl-libs-4:5.38.0-500.fc39.s390x perl-locale-1.10-500.fc39.noarch perl-mro-1.28-500.fc39.s390x perl-overload-1.37-500.fc39.noarch perl-overloading-0.02-500.fc39.noarch perl-parent-1:0.241-500.fc39.noarch perl-podlators-1:5.01-500.fc39.noarch perl-vars-1.05-500.fc39.noarch pixman-0.42.2-2.fc39.s390x poppler-23.08.0-1.fc39.s390x poppler-data-0.4.11-5.fc39.noarch poppler-glib-23.08.0-1.fc39.s390x pyproject-rpm-macros-1.9.0-2.fc39.noarch python-pip-wheel-23.2.1-1.fc39.noarch python-rpm-macros-3.12-4.fc40.noarch python3-3.12.0~rc2-1.fc40.s390x python3-devel-3.12.0~rc2-1.fc40.s390x python3-libs-3.12.0~rc2-1.fc40.s390x python3-numpy-1:1.24.4-2.fc39.s390x python3-packaging-23.1-5.fc40.noarch python3-rpm-generators-14-7.fc39.noarch python3-rpm-macros-3.12-4.fc40.noarch qt-settings-39.0-1.fc40.noarch qt5-designer-5.15.10-3.fc39.s390x qt5-doctools-5.15.10-3.fc39.s390x qt5-linguist-5.15.10-3.fc39.s390x qt5-qtbase-5.15.10-9.fc40.s390x qt5-qtbase-common-5.15.10-9.fc40.noarch qt5-qtbase-devel-5.15.10-9.fc40.s390x qt5-qtbase-gui-5.15.10-9.fc40.s390x qt5-qtdeclarative-5.15.10-2.fc39.s390x qt5-qtsvg-5.15.10-2.fc39.s390x qt5-qtsvg-devel-5.15.10-2.fc39.s390x qt5-qttools-5.15.10-3.fc39.s390x qt5-qttools-common-5.15.10-3.fc39.noarch qt5-qttools-devel-5.15.10-3.fc39.s390x qt5-qttools-libs-designer-5.15.10-3.fc39.s390x qt5-qttools-libs-designercomponents-5.15.10-3.fc39.s390x qt5-qttools-libs-help-5.15.10-3.fc39.s390x qt5-rpm-macros-5.15.10-2.fc39.noarch rav1e-libs-0.6.6-2.fc39.s390x rhash-1.4.3-3.fc39.s390x rsvg-pixbuf-loader-2.56.92-1.fc40.s390x shared-mime-info-2.2-4.fc39.s390x spglib-2.0.2-3.fc39.s390x spglib-devel-2.0.2-3.fc39.s390x svt-av1-libs-1.4.1-3.fc39.s390x tzdata-2023c-3.fc40.noarch urw-base35-bookman-fonts-20200910-18.fc39.noarch urw-base35-c059-fonts-20200910-18.fc39.noarch urw-base35-d050000l-fonts-20200910-18.fc39.noarch urw-base35-fonts-20200910-18.fc39.noarch urw-base35-fonts-common-20200910-18.fc39.noarch urw-base35-gothic-fonts-20200910-18.fc39.noarch urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39.noarch urw-base35-nimbus-roman-fonts-20200910-18.fc39.noarch urw-base35-nimbus-sans-fonts-20200910-18.fc39.noarch urw-base35-p052-fonts-20200910-18.fc39.noarch urw-base35-standard-symbols-ps-fonts-20200910-18.fc39.noarch urw-base35-z003-fonts-20200910-18.fc39.noarch vim-filesystem-2:9.0.1882-1.fc40.noarch vulkan-headers-1.3.261.1-2.fc40.noarch vulkan-loader-1.3.261.1-1.fc40.s390x vulkan-loader-devel-1.3.261.1-1.fc40.s390x xapian-core-libs-1.4.23-1.fc39.s390x xcb-util-0.4.1-3.fc39.s390x xcb-util-image-0.4.1-3.fc39.s390x xcb-util-keysyms-0.4.1-3.fc39.s390x xcb-util-renderutil-0.3.10-3.fc39.s390x xcb-util-wm-0.4.2-3.fc39.s390x xkeyboard-config-2.39-2.fc39.noarch xml-common-0.6.3-61.fc39.noarch xorg-x11-proto-devel-2023.2-3.fc40.noarch zlib-devel-1.2.13-4.fc39.s390x Complete! Finish: build setup for avogadro2-libs-1.97.0-8.fc40.src.rpm Start: rpmbuild avogadro2-libs-1.97.0-8.fc40.src.rpm warning: %patchN is deprecated (3 usages found), use %patch N (or %patch -P N) Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1689724800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.3j6Gj9 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf avogadrolibs-1.97.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/avogadrolibs-1.97.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd avogadrolibs-1.97.0 + rm -rf /builddir/build/BUILD/avogadrolibs-1.97.0-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/avogadrolibs-1.97.0-SPECPARTS + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/avogenerators-1.97.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + unzip -qq /builddir/build/SOURCES/avogadro2-libs-molecules-master.zip + mv molecules-master molecules + tar -xf /builddir/build/SOURCES/avogadro2-libs-crystals-1.0.1.tar.gz + mv crystals-1.0.1 crystals + mv molecules/LICENSE molecules/LICENSE-molecules Patch #0 (avogadro2-libs-set_pythonpath.patch): + echo 'Patch #0 (avogadro2-libs-set_pythonpath.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .backup --fuzz=0 patching file avogadro/qtplugins/quantuminput/CMakeLists.txt Hunk #1 succeeded at 37 (offset -4 lines). patching file avogadro/qtplugins/scriptfileformats/CMakeLists.txt Hunk #1 succeeded at 20 (offset -4 lines). Patch #1 (avogadro2-libs-1.94.0-do_not_download_external_files.patch): + echo 'Patch #1 (avogadro2-libs-1.94.0-do_not_download_external_files.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .backup --fuzz=0 patching file avogadro/qtplugins/insertfragment/CMakeLists.txt Patch #2 (avogadro2-libs-bug1185.patch): + echo 'Patch #2 (avogadro2-libs-bug1185.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file avogadro/io/mmtfformat.cpp Hunk #1 succeeded at 33 (offset -2 lines). Hunk #2 succeeded at 50 (offset -2 lines). + mv avogenerators-1.97.0 avogadrogenerators + mv avogadrogenerators/README.md avogadrogenerators/README-avogenerators.md + sed -e 's|../avogadrogenerators|avogadrogenerators|g' -i avogadro/qtplugins/quantuminput/CMakeLists.txt + mv thirdparty/libgwavi/README.md thirdparty/libgwavi/README-libgwavi.md + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.NqP4Di + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd avogadrolibs-1.97.0 + mkdir -p build + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -B build -DCMAKE_BUILD_TYPE:STRING=Release -DINSTALL_INCLUDE_DIR:PATH=include/avogadro2 -DINSTALL_LIBRARY_DIR:PATH=lib64 -Wno-dev -DENABLE_GLSL:BOOL=ON -DENABLE_PYTHON:BOOL=ON -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_VERSION:STRING=3.12 -DUSE_BOOST_PYTHON:BOOL=ON -DUSE_LIBARCHIVE:BOOL=ON -DENABLE_RPATH:BOOL=OFF -DENABLE_TESTING:BOOL=OFF -DUSE_MMTF:BOOL=ON -DUSE_QT:BOOL=ON -DUSE_MOLEQUEUE:BOOL=ON -DUSE_VTK:BOOL=OFF -DUSE_HDF5:BOOL=ON -DUSE_SPGLIB:BOOL=ON -DSPGLIB_LIBRARY:FILEPATH=/usr/lib64/libsymspg.so -DSPGLIB_INCLUDE_DIR:PATH=/usr/include/spglib -DBUILD_GPL_PLUGINS:BOOL=ON -DBUILD_STATIC_PLUGINS:BOOL=ON -DBUILD_DOCUMENTATION:BOOL=ON -DUSE_LIBMSYM:BOOL=OFF -- The C compiler identification is GNU 13.2.1 -- The CXX compiler identification is GNU 13.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Could not use git to determine source version, using version 1.97.0 -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found SPGLIB: /usr/include/spglib -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found MMTF: /usr/include -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1") found components: C -- Found OpenGL: /usr/lib64/libOpenGL.so -- Found GLEW: /usr/include -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12", minimum required is "3") We have dalton.py;gamessuk.py;gaussian.py;molpro.py;mopac.py;nwchem.py;orca.py;psi4.py;pyscf.py;qchem.py;terachem.py We have /builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/dalton.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/gamessuk.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/gaussian.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/molpro.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/mopac.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/nwchem.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/orca.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/psi4.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/pyscf.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/qchem.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/terachem.py -- Found LIBARCHIVE: /usr/include -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen dot -- Configuring done (1.7s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP ENABLE_GLSL ENABLE_PYTHON INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR USE_BOOST_PYTHON USE_MOLEQUEUE -- Build files have been written to: /builddir/build/BUILD/avogadrolibs-1.97.0/build + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C build make: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/cmake -S/builddir/build/BUILD/avogadrolibs-1.97.0 -B/builddir/build/BUILD/avogadrolibs-1.97.0/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.97.0/build/CMakeFiles /builddir/build/BUILD/avogadrolibs-1.97.0/build//CMakeFiles/progress.marks make: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/depend /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/encodefile/CMakeFiles/encodefile.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr/CMakeFiles/bodrparse.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/build /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 0%] Building CXX object utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/encodefile && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o -MF CMakeFiles/encodefile.dir/encodefile.cxx.o.d -o CMakeFiles/encodefile.dir/encodefile.cxx.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/encodefile/encodefile.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Linking CXX executable ../../bin/encodefile cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/encodefile && /usr/bin/cmake -E cmake_link_script CMakeFiles/encodefile.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/encodefile.dir/encodefile.cxx.o -o ../../bin/encodefile make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Built target encodefile make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata/CMakeFiles/resdataparse.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Building CXX object utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -MF CMakeFiles/resdataparse.dir/resdataparse.cxx.o.d -o CMakeFiles/resdataparse.dir/resdataparse.cxx.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx: In function ‘int main(int, char**)’: /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:129:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 129 | for (i = 0; i < atoms.size(); ++i) { | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:131:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 131 | if (i != atoms.size() - 1) | ~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:136:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::__cxx11::basic_string > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 136 | for (i = 0; i < singleBonds.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:139:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::__cxx11::basic_string > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 139 | if (i != singleBonds.size() - 1) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:144:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::__cxx11::basic_string > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 144 | for (i = 0; i < doubleBonds.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:147:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::__cxx11::basic_string > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 147 | if (i != doubleBonds.size() - 1) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:181:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 181 | for (int j = 0; j < residueClassNames.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:184:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | if (j != residueClassNames.size() - 1) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Linking CXX executable ../../bin/resdataparse cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata && /usr/bin/cmake -E cmake_link_script CMakeFiles/resdataparse.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/resdataparse.dir/resdataparse.cxx.o -o ../../bin/resdataparse make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Built target resdataparse make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f thirdparty/struct/CMakeFiles/struct.dir/build.make thirdparty/struct/CMakeFiles/struct.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/struct /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/struct/CMakeFiles/struct.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f thirdparty/struct/CMakeFiles/struct.dir/build.make thirdparty/struct/CMakeFiles/struct.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Building C object thirdparty/struct/CMakeFiles/struct.dir/struct.c.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/struct && /usr/bin/gcc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -MD -MT thirdparty/struct/CMakeFiles/struct.dir/struct.c.o -MF CMakeFiles/struct.dir/struct.c.o.d -o CMakeFiles/struct.dir/struct.c.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct/struct.c make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Building C object thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/struct && /usr/bin/gcc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 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avogadro/core/CMakeFiles/AvogadroCore.dir/build.make avogadro/core/CMakeFiles/AvogadroCore.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core/CMakeFiles/AvogadroCore.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/core/CMakeFiles/AvogadroCore.dir/build.make avogadro/core/CMakeFiles/AvogadroCore.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o -MF CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o.d -o CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 3%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o -MF CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o.d -o CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.cpp: In static member function ‘static Avogadro::Vector3 Avogadro::Core::AtomUtilities::generateNewBondVector(const Avogadro::Core::Atom&, const std::vector, std::allocator > >&, Avogadro::Core::AtomHybridization)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.cpp:109:10: warning: variable ‘noA2’ set but not used [-Wunused-but-set-variable] 109 | bool noA2 = false; | ^~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mdlvalence_p.h: At global scope: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mdlvalence_p.h:19:21: warning: ‘unsigned int Avogadro::Core::atomValence(unsigned char, int, unsigned int)’ defined but not used [-Wunused-function] 19 | static unsigned int atomValence(const unsigned char atomicNumber, | ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 0%] Building CXX object utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o -MF CMakeFiles/bodrparse.dir/bodrparse.cxx.o.d -o CMakeFiles/bodrparse.dir/bodrparse.cxx.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/bodr/bodrparse.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 3%] Linking CXX executable ../../bin/bodrparse cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr && /usr/bin/cmake -E cmake_link_script CMakeFiles/bodrparse.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/bodrparse.dir/bodrparse.cxx.o -o ../../bin/bodrparse make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 3%] Built target bodrparse make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build.make avogadro/rendering/CMakeFiles/AvogadroRendering.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 3%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/textlabelbase_vs.h textlabelbase_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 4%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrow_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrow_vs.glsl 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/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedline_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/dashedline_vs.h dashedline_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 4%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestrip_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestrip_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/linestrip_fs.h linestrip_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestrip_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestrip_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/linestrip_vs.h linestrip_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/mesh_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/mesh_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/mesh_fs.h mesh_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/mesh_opaque_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/mesh_opaque_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/mesh_opaque_fs.h mesh_opaque_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/mesh_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/mesh_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/mesh_vs.h mesh_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_bake_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_bake_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_bake_fs.h sphere_ao_bake_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_bake_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_bake_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_bake_vs.h sphere_ao_bake_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_depth_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_depth_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_depth_fs.h sphere_ao_depth_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 6%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_depth_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_depth_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_depth_vs.h sphere_ao_depth_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 6%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_render_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_render_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_render_fs.h sphere_ao_render_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 6%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_render_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_render_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_render_vs.h sphere_ao_render_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 6%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheres_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheres_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/spheres_fs.h spheres_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 6%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheres_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheres_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/spheres_vs.h spheres_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/textlabelbase_fs.h textlabelbase_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/CMakeFiles/AvogadroRendering.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build.make avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 3%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o -MF CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o.d -o CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /usr/include/c++/13/istream:41, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:6: In function ‘std::operator<< >(std::basic_ostream >&, char const*)std::basic_ostream >&’, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:138:69: /usr/include/c++/13/ostream:664:7: warning: ‘symbol’ may be used uninitialized [-Wmaybe-uninitialized] 664 | if (!__s) | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:67:15: note: ‘symbol’ was declared here 67 | const char* symbol; | ^~~~~~ In function ‘std::operator<< >(std::basic_ostream >&, char const*)std::basic_ostream >&’, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:141:67: /usr/include/c++/13/ostream:664:7: warning: ‘name’ may be used uninitialized [-Wmaybe-uninitialized] 664 | if (!__s) | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:68:15: note: ‘name’ was declared here 68 | const char* name; | ^~~~ In file included from /usr/include/eigen3/Eigen/Core:257, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:8: In member function ‘Eigen::internal::mul_assign_op::assignCoeff(double&, double const&) const’, inlined from ‘Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeff(long)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:660:26, inlined from ‘Eigen::internal::copy_using_evaluator_LinearTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 0, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:247:23, inlined from ‘Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 1, 2>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:528:106, inlined from ‘Eigen::internal::call_dense_assignment_loop, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘Eigen::internal::Assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘Eigen::internal::call_assignment_no_alias, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘Eigen::internal::call_assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from ‘Eigen::DenseBase >::operator*=(double const&)’ at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:107:18: /usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: ‘MEM[(double &)&pos3d]’ may be used uninitialized [-Wmaybe-uninitialized] 92 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; } | ~~^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:69:11: note: ‘MEM[(double &)&pos3d]’ was declared here 69 | Vector3 pos3d; | ^~~~~ In member function ‘Eigen::internal::mul_assign_op::assignCoeff(double&, double const&) const’, inlined from ‘Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeff(long)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:660:26, inlined from ‘Eigen::internal::copy_using_evaluator_LinearTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 1, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:247:23, inlined from ‘Eigen::internal::copy_using_evaluator_LinearTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 0, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:248:87, inlined from ‘Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 1, 2>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:528:106, inlined from ‘Eigen::internal::call_dense_assignment_loop, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘Eigen::internal::Assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘Eigen::internal::call_assignment_no_alias, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘Eigen::internal::call_assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from ‘Eigen::DenseBase >::operator*=(double const&)’ at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:107:18: /usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: ‘MEM[(double &)&pos3d + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 92 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; } | ~~^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:69:11: note: ‘MEM[(double &)&pos3d + 8]’ was declared here 69 | Vector3 pos3d; | ^~~~~ In member function ‘Eigen::internal::mul_assign_op::assignCoeff(double&, double const&) const’, inlined from ‘Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeff(long)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:660:26, inlined from ‘Eigen::internal::copy_using_evaluator_LinearTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 2, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:247:23, inlined from ‘Eigen::internal::copy_using_evaluator_LinearTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 1, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:248:87, inlined from ‘Eigen::internal::copy_using_evaluator_LinearTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 0, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:248:87, inlined from ‘Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 1, 2>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:528:106, inlined from ‘Eigen::internal::call_dense_assignment_loop, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘Eigen::internal::Assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘Eigen::internal::call_assignment_no_alias, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘Eigen::internal::call_assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from ‘Eigen::DenseBase >::operator*=(double const&)’ at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:107:18: /usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: ‘MEM[(double &)&pos3d + 16]’ may be used uninitialized [-Wmaybe-uninitialized] 92 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; } | ~~^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:69:11: note: ‘MEM[(double &)&pos3d + 16]’ was declared here 69 | Vector3 pos3d; | ^~~~~ In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:164:76: /usr/include/c++/13/ostream:223:25: warning: ‘MEM[(Scalar &)&fpos3d]’ may be used uninitialized [-Wmaybe-uninitialized] 223 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:70:11: note: ‘MEM[(Scalar &)&fpos3d]’ was declared here 70 | Vector3 fpos3d; | ^~~~~~ In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:172:76: /usr/include/c++/13/ostream:223:25: warning: ‘MEM[(Scalar &)&fpos3d + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 223 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:70:11: note: ‘MEM[(Scalar &)&fpos3d + 8]’ was declared here 70 | Vector3 fpos3d; | ^~~~~~ In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:180:76: /usr/include/c++/13/ostream:223:25: warning: ‘MEM[(Scalar &)&fpos3d + 16]’ may be used uninitialized [-Wmaybe-uninitialized] 223 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:70:11: note: ‘MEM[(Scalar &)&fpos3d + 16]’ was declared here 70 | Vector3 fpos3d; | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor ‘Avogadro::Rendering::Line::Line()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: ‘Avogadro::Rendering::Line::radius’ will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: ‘bool Avogadro::Rendering::Line::flat’ [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: ‘Avogadro::Rendering::Line::flat’ will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: ‘bool Avogadro::Rendering::Line::dirty’ [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor ‘Avogadro::Rendering::Line::Line(float)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: ‘Avogadro::Rendering::Line::radius’ will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: ‘bool Avogadro::Rendering::Line::dirty’ [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o -MF CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o.d -o CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp In file included from /usr/include/c++/13/vector:66, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:6: In member function ‘std::vector, std::allocator > >::resize(unsigned long, Eigen::Matrix const&)’, inlined from ‘Avogadro::Core::Array >::resize(unsigned long const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:177:19, inlined from ‘Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array > const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:676:16, inlined from ‘Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array > const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:666:6: /usr/include/c++/13/bits/stl_vector.h:1034:25: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1034 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72: /usr/include/c++/13/bits/vector.tcc: In function ‘Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array > const&)’: /usr/include/c++/13/bits/vector.tcc:529:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector, std::allocator > >::_M_fill_insert(__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned long, Eigen::Matrix const&)’ declared here 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:676:16: note: ‘’ declared here 676 | output.resize(coords.size()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In member function ‘std::vector, std::allocator > >::resize(unsigned long, Eigen::Matrix const&)’, inlined from ‘Avogadro::Core::Array >::resize(unsigned long const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:177:19, inlined from ‘Avogadro::Core::CrystalTools::fractionalCoordinates(Avogadro::Core::Molecule const&, Avogadro::Core::Array >&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:647:16, inlined from ‘Avogadro::Core::CrystalTools::fractionalCoordinates(Avogadro::Core::Molecule const&, Avogadro::Core::Array >&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:640:6: /usr/include/c++/13/bits/stl_vector.h:1034:25: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1034 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In function ‘Avogadro::Core::CrystalTools::fractionalCoordinates(Avogadro::Core::Molecule const&, Avogadro::Core::Array >&)’: /usr/include/c++/13/bits/vector.tcc:529:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector, std::allocator > >::_M_fill_insert(__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned long, Eigen::Matrix const&)’ declared here 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:647:16: note: ‘’ declared here 647 | coords.resize(molecule.atomCount()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o -MF CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor ‘Avogadro::Rendering::Line::Line()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: ‘Avogadro::Rendering::Line::radius’ will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: ‘bool Avogadro::Rendering::Line::flat’ [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: ‘Avogadro::Rendering::Line::flat’ will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: ‘bool Avogadro::Rendering::Line::dirty’ [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor ‘Avogadro::Rendering::Line::Line(float)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: ‘Avogadro::Rendering::Line::radius’ will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: ‘bool Avogadro::Rendering::Line::dirty’ [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.cpp: In member function ‘virtual Avogadro::Vector3f Avogadro::Rendering::BSplineGeometry::computeCurvePoint(float, const std::__cxx11::list&) const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.cpp:54:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 54 | else if (startIndex > size - 2 * lookahead) startIndex = size - 2 * lookahead; | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o -MF CMakeFiles/AvogadroCore.dir/cube.cpp.o.d -o CMakeFiles/AvogadroCore.dir/cube.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 8%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o -MF CMakeFiles/AvogadroCore.dir/elements.cpp.o.d -o CMakeFiles/AvogadroCore.dir/elements.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elements.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 8%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor ‘Avogadro::Rendering::Line::Line()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: ‘Avogadro::Rendering::Line::radius’ will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: ‘bool Avogadro::Rendering::Line::flat’ [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: ‘Avogadro::Rendering::Line::flat’ will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: ‘bool Avogadro::Rendering::Line::dirty’ [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor ‘Avogadro::Rendering::Line::Line(float)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: ‘Avogadro::Rendering::Line::radius’ will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: ‘bool Avogadro::Rendering::Line::dirty’ [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:12: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:46:21: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&vert1].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: ‘vert1’ declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:46:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: ‘vert1’ declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:46:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: ‘vert1’ declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:51:21: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&vert2].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: ‘vert2’ declared here 48 | ColorNormalVertex vert2; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:51:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: ‘vert2’ declared here 48 | ColorNormalVertex vert2; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:51:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: ‘vert2’ declared here 48 | ColorNormalVertex vert2; | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 8%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o -MF CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o.d -o CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp: In member function ‘Avogadro::Core::Dihedral Avogadro::Core::DihedralIterator::begin()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp:38:16: warning: unused variable ‘d’ [-Wunused-variable] 38 | Index a, d; | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp: In member function ‘Avogadro::Core::Dihedral Avogadro::Core::DihedralIterator::operator++()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp:118:18: warning: unused variable ‘d’ [-Wunused-variable] 118 | Index a, d; | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp:74:9: warning: unused variable ‘count’ [-Wunused-variable] 74 | Index count = m_mol->atomCount(); | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o -MF CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o.d -o CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 8%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/camera.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/camera.cpp.o -MF CMakeFiles/AvogadroRendering.dir/camera.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/camera.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o -MF CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o.d -o CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussiansettools.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o -MF CMakeFiles/AvogadroCore.dir/graph.cpp.o.d -o CMakeFiles/AvogadroCore.dir/graph.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp: In member function ‘void Avogadro::Core::Graph::updateSubgraphs() const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:532:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 532 | for (int i = 0; i < m_subgraphToVertices.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp: In member function ‘Avogadro::Core::Graph::removeEdge(unsigned long, unsigned long)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:311:5: warning: ‘edgeIndex’ may be used uninitialized [-Wmaybe-uninitialized] 311 | if (m_edgeMap[b][i] == edgeIndex) { | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:299:10: note: ‘edgeIndex’ was declared here 299 | size_t edgeIndex; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp: In member function ‘Avogadro::Core::Graph::swapEdgeIndices(unsigned long, unsigned long)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:421:17: warning: ‘MEM[(long unsigned int * &)&changeTo2]’ may be used uninitialized [-Wmaybe-uninitialized] 421 | *changeTo2[0] = edgeIndex2; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:392:26: note: ‘MEM[(long unsigned int * &)&changeTo2]’ was declared here 392 | std::array changeTo2; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:422:17: warning: ‘MEM[(long unsigned int * &)&changeTo2 + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 422 | *changeTo2[1] = edgeIndex2; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:392:26: note: ‘MEM[(long unsigned int * &)&changeTo2 + 8]’ was declared here 392 | std::array changeTo2; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:423:17: warning: ‘MEM[(long unsigned int * &)&changeTo1]’ may be used uninitialized [-Wmaybe-uninitialized] 423 | *changeTo1[0] = edgeIndex1; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:405:26: note: ‘MEM[(long unsigned int * &)&changeTo1]’ was declared here 405 | std::array changeTo1; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:424:17: warning: ‘MEM[(long unsigned int * &)&changeTo1 + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 424 | *changeTo1[1] = edgeIndex1; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:405:26: note: ‘MEM[(long unsigned int * &)&changeTo1 + 8]’ was declared here 405 | std::array changeTo1; | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor ‘Avogadro::Rendering::Line::Line()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: ‘Avogadro::Rendering::Line::radius’ will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: ‘bool Avogadro::Rendering::Line::flat’ [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: ‘Avogadro::Rendering::Line::flat’ will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: ‘bool Avogadro::Rendering::Line::dirty’ [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor ‘Avogadro::Rendering::Line::Line(float)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: ‘Avogadro::Rendering::Line::radius’ will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: ‘bool Avogadro::Rendering::Line::dirty’ [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:56:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:52:23: note: ‘vert1’ declared here 52 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:56:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool)make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:52:23: note: ‘vert1’ declared here 52 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:62:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:58:23: note: ‘vert2’ declared here 58 | ColorNormalVertex vert2; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:62:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:58:23: note: ‘vert2’ declared here 58 | ColorNormalVertex vert2; | ^~~~~ In file included from /usr/include/eigen3/Eigen/Core:253, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:12: In member function ‘Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const’, inlined from ‘Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from ‘Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from ‘Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78, inlined from ‘Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:222:21, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from ‘Avogadro::Rendering::CurveGeometry::update(int)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:90:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: ‘MEM[(float &)&previous]’ may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::update(int)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:80:12: note: ‘MEM[(float &)&previous]’ was declared here 80 | Vector3f previous; | ^~~~~~~~ In member function ‘Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const’, inlined from ‘Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from ‘Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from ‘Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 2>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from ‘Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:222:21, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from ‘Avogadro::Rendering::CurveGeometry::update(int)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:90:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: ‘MEM[(float &)&previous + 4]’ may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::update(int)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:80:12: note: ‘MEM[(float &)&previous + 4]’ was declared here 80 | Vector3f previous; | ^~~~~~~~ In member function ‘Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const’, inlined from ‘Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from ‘Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from ‘Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 2, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 2>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from ‘Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:222:21, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from ‘Avogadro::Rendering::CurveGeometry::update(int)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:90:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: ‘MEM[(float &)&previous + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::update(int)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:80:12: note: ‘MEM[(float &)&previous + 8]’ was declared here 80 | Vector3f previous; | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/layer.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/layer.cpp.o -MF CMakeFiles/AvogadroCore.dir/layer.cpp.o.d -o CMakeFiles/AvogadroCore.dir/layer.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/layermanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/layermanager.cpp.o -MF CMakeFiles/AvogadroCore.dir/layermanager.cpp.o.d -o CMakeFiles/AvogadroCore.dir/layermanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::CylinderGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:117:35: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp: In member function ‘Avogadro::Rendering::CylinderGeometry::update()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:110:25: note: ‘vert’ declared here 110 | ColorNormalVertex vert(itCylinder->color, -direction, position1); | ^~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::CylinderGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:117:35: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp: In member function ‘Avogadro::Rendering::CylinderGeometry::update()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:110:25: note: ‘vert’ declared here 110 | ColorNormalVertex vert(itCylinder->color, -direction, position1); | ^~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::CylinderGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:120:35: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp: In member function ‘Avogadro::Rendering::CylinderGeometry::update()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:111:25: note: ‘vert2’ declared here 111 | ColorNormalVertex vert2(itCylinder->color2, -direction, position1); | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::CylinderGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:120:35: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp: In member function ‘Avogadro::Rendering::CylinderGeometry::update()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:111:25: note: ‘vert2’ declared here 111 | ColorNormalVertex vert2(itCylinder->color2, -direction, position1); | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o -MF CMakeFiles/AvogadroCore.dir/mesh.cpp.o.d -o CMakeFiles/AvogadroCore.dir/mesh.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.h:13, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::Core::Mesh::smooth(int)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp:189:46: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.182240].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp: In member function ‘Avogadro::Core::Mesh::smooth(int)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp:189:46: note: ‘’ declared here 189 | Array planarList(m_vertices.size()); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 10%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/drawable.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/drawable.cpp.o -MF CMakeFiles/AvogadroRendering.dir/drawable.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/drawable.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o -MF CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor ‘Avogadro::Rendering::Line::Line()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: ‘Avogadro::Rendering::Line::radius’ will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: ‘bool Avogadro::Rendering::Line::flat’ [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: ‘Avogadro::Rendering::Line::flat’ will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: ‘bool Avogadro::Rendering::Line::dirty’ [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor ‘Avogadro::Rendering::Line::Line(float)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: ‘Avogadro::Rendering::Line::radius’ will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: ‘bool Avogadro::Rendering::Line::dirty’ [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o -MF CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o -MF CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor ‘Avogadro::Rendering::Line::Line()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: ‘Avogadro::Rendering::Line::radius’ will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: ‘bool Avogadro::Rendering::Line::flat’ [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: ‘Avogadro::Rendering::Line::flat’ will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: ‘bool Avogadro::Rendering::Line::dirty’ [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor ‘Avogadro::Rendering::Line::Line(float)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: ‘Avogadro::Rendering::Line::radius’ will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: ‘bool Avogadro::Rendering::Line::dirty’ [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.cpp:6: In member function ‘Avogadro::Rendering::MeshGeometry::PackedVertex::PackedVertex(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Core::Array::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:250:22, inlined from ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array > const&, Avogadro::Core::Array > const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.cpp:254:25: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:25:10: warning: ‘MEM[(const struct PackedVertex &)&D.259678].padding’ may be used uninitialized [-Wmaybe-uninitialized] 25 | struct PackedVertex | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.cpp: In member function ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array > const&, Avogadro::Core::Array > const&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.cpp:254:71: note: ‘’ declared here 254 | m_vertices.push_back(PackedVertex(tmpColor, *(nIter++), *(vIter++))); | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/node.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/node.cpp.o -MF CMakeFiles/AvogadroRendering.dir/node.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/node.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 10%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o -MF CMakeFiles/AvogadroCore.dir/molecule.cpp.o.d -o CMakeFiles/AvogadroCore.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h: In copy constructor ‘Avogadro::Core::Molecule::Molecule(const Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:734:24: warning: ‘Avogadro::Core::Molecule::m_atomicNumbers’ will be initialized after [-Wreorder] 734 | Array m_atomicNumbers; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:727:18: warning: ‘short unsigned int Avogadro::Core::Molecule::m_hallNumber’ [-Wreorder] 727 | unsigned short m_hallNumber = 0; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp:34:1: warning: when initialized here [-Wreorder] 34 | Molecule::Molecule(const Molecule& other) | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h: In constructor ‘Avogadro::Core::Molecule::Molecule(Avogadro::Core::Molecule&&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:734:24: warning: ‘Avogadro::Core::Molecule::m_atomicNumbers’ will be initialized after [-Wreorder] 734 | Array m_atomicNumbers; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:727:18: warning: ‘short unsigned int Avogadro::Core::Molecule::m_hallNumber’ [-Wreorder] 727 | unsigned short m_hallNumber = 0; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp:75:1: warning: when initialized here [-Wreorder] 75 | Molecule::Molecule(Molecule&& other) noexcept | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp: In member function ‘void Avogadro::Core::Molecule::setPartialCharges(const std::string&, const Avogadro::MatrixX&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp:248:20: warning: comparison of integer expressions of different signedness: ‘Eigen::EigenBase >::Index’ {aka ‘long int’} and ‘Avogadro::Index’ {aka ‘long unsigned int’} [-Wsign-compare] 248 | if (value.size() != atomCount()) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/mutex.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/mutex.cpp.o -MF CMakeFiles/AvogadroCore.dir/mutex.cpp.o.d -o CMakeFiles/AvogadroCore.dir/mutex.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mutex.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/scene.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/scene.cpp.o -MF CMakeFiles/AvogadroRendering.dir/scene.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/scene.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o -MF CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o.d -o CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/nameatomtyper.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shader.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shader.cpp.o -MF CMakeFiles/AvogadroRendering.dir/shader.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/shader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o -MF CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o.d -o CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o -MF CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.cpp: In member function ‘bool Avogadro::Rendering::ShaderProgram::setTextureSampler(const std::string&, const Avogadro::Rendering::Texture2D&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.cpp:280:59: warning: typedef ‘TMapIter’ locally defined but not used [-Wunused-local-typedefs] 280 | typedef std::map::const_iterator TMapIter; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In member function ‘Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::SphereGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:90:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: ‘MEM[(const struct ColorTextureVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp: In member function ‘Avogadro::Rendering::SphereGeometry::update()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:88:26: note: ‘vert’ declared here 88 | ColorTextureVertex vert(itSphere->center, itSphere->color, | ^~~~ In member function ‘Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::SphereGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:92:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: ‘MEM[(const struct ColorTextureVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp: In member function ‘Avogadro::Rendering::SphereGeometry::update()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:88:26: note: ‘vert’ declared here 88 | ColorTextureVertex vert(itSphere->center, itSphere->color, | ^~~~ In member function ‘Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::SphereGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:94:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: ‘MEM[(const struct ColorTextureVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp: In member function ‘Avogadro::Rendering::SphereGeometry::update()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:88:26: note: ‘vert’ declared here 88 | ColorTextureVertex vert(itSphere->center, itSphere->color, | ^~~~ In member function ‘Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::SphereGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:96:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: ‘MEM[(const struct ColorTextureVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp: In member function ‘Avogadro::Rendering::SphereGeometry::update()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:88:26: note: ‘vert’ declared here 88 | ColorTextureVertex vert(itSphere->center, itSphere->color, | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel2d.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel3d.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textrenderstrategy.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o -MF CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o -MF CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/visitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/visitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/visitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/visitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/volumegeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp: In member function ‘void Avogadro::Rendering::VRMLVisitor::begin()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp:62:12: warning: variable ‘cameraX’ set but not used [-Wunused-but-set-variable] 62 | Vector3f cameraX = | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp:64:12: warning: variable ‘cameraY’ set but not used [-Wunused-but-set-variable] 64 | Vector3f cameraY = | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp:66:12: warning: variable ‘cameraZ’ set but not used [-Wunused-but-set-variable] 66 | Vector3f cameraZ = | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp:71:12: warning: variable ‘light0pos’ set but not used [-Wunused-but-set-variable] 71 | Vector3f light0pos = | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In member function ‘Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1156:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: ‘MEM[(const struct ColorTextureVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function ‘Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: ‘vert’ declared here 1150 | ColorTextureVertex vert( | ^~~~ In member function ‘Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1158:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: ‘MEM[(const struct ColorTextureVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function ‘Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: ‘vert’ declared here 1150 | ColorTextureVertex vert( | ^~~~ In member function ‘Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1160:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: ‘MEM[(const struct ColorTextureVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function ‘Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: ‘vert’ declared here 1150 | ColorTextureVertex vert( | ^~~~ In member function ‘Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertemake[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' x*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1154:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: ‘MEM[(const struct ColorTextureVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function ‘Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: ‘vert’ declared here 1150 | ColorTextureVertex vert( | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 15%] Linking CXX shared library ../../lib/libAvogadroRendering.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroRendering.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroRendering.so.1 -o ../../lib/libAvogadroRendering.so.1.97.0 CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o CMakeFiles/AvogadroRendering.dir/camera.cpp.o CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o CMakeFiles/AvogadroRendering.dir/drawable.cpp.o CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o CMakeFiles/AvogadroRendering.dir/node.cpp.o CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o CMakeFiles/AvogadroRendering.dir/scene.cpp.o CMakeFiles/AvogadroRendering.dir/shader.cpp.o CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o CMakeFiles/AvogadroRendering.dir/visitor.cpp.o CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -Wl,-rpath,:::::::::: /usr/lib64/libGLEW.so /usr/lib64/libGL.so /usr/lib64/libGLU.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroRendering.so.1.97.0 ../../lib/libAvogadroRendering.so.1 ../../lib/libAvogadroRendering.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 15%] Built target AvogadroRendering make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 15%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o -MF CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o.d -o CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.cpp:50:8: warning: ‘std::size_t Avogadro::Core::{anonymous}::DistanceMatrix::operator()(std::size_t, std::size_t) const’ defined but not used [-Wunused-function] 50 | size_t DistanceMatrix::operator()(size_t i, size_t j) const | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/residue.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/residue.cpp.o -MF CMakeFiles/AvogadroCore.dir/residue.cpp.o.d -o CMakeFiles/AvogadroCore.dir/residue.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o -MF CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o.d -o CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp: In member function ‘void Avogadro::Core::SecondaryStructureAssigner::assign(Avogadro::Core::Molecule*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:63:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 63 | for (auto i = 1; i < residueCount - 1; ++i) { | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:113:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 113 | for (auto i = 1; i < residueCount - 1; ++i) { | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:131:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 131 | for (auto i = 1; i < residueCount - 1; ++i) { | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp: In member function ‘void Avogadro::Core::SecondaryStructureAssigner::assignBackboneHydrogenBonds()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:217:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 217 | for (unsigned int i = 0; i < n; ++i) { | ~~^~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:221:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 221 | for (unsigned int j = i + 1; j < n; ++j) { | ~~^~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o -MF CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o.d -o CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slatersettools.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o -MF CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o.d -o CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o -MF CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o.d -o CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/symbolatomtyper.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/unitcell.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/unitcell.cpp.o -MF CMakeFiles/AvogadroCore.dir/unitcell.cpp.o.d -o CMakeFiles/AvogadroCore.dir/unitcell.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/variantmap.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/variantmap.cpp.o -MF CMakeFiles/AvogadroCore.dir/variantmap.cpp.o.d -o CMakeFiles/AvogadroCore.dir/variantmap.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variantmap.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o -MF CMakeFiles/AvogadroCore.dir/version.cpp.o.d -o CMakeFiles/AvogadroCore.dir/version.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/version.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o -MF CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o.d -o CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/sharedmutex.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -MF CMakeFiles/AvogadroCore.dir/avospglib.cpp.o.d -o CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avospglib.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/slaterset.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/slaterset.cpp.o -MF CMakeFiles/AvogadroCore.dir/slaterset.cpp.o.d -o CMakeFiles/AvogadroCore.dir/slaterset.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Linking CXX shared library ../../lib/libAvogadroCore.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroCore.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroCore.so.1 -o ../../lib/libAvogadroCore.so.1.97.0 CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o CMakeFiles/AvogadroCore.dir/cube.cpp.o CMakeFiles/AvogadroCore.dir/elements.cpp.o CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o CMakeFiles/AvogadroCore.dir/graph.cpp.o CMakeFiles/AvogadroCore.dir/layer.cpp.o CMakeFiles/AvogadroCore.dir/layermanager.cpp.o CMakeFiles/AvogadroCore.dir/mesh.cpp.o CMakeFiles/AvogadroCore.dir/molecule.cpp.o CMakeFiles/AvogadroCore.dir/mutex.cpp.o CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o CMakeFiles/AvogadroCore.dir/residue.cpp.o CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o CMakeFiles/AvogadroCore.dir/slaterset.cpp.o CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o CMakeFiles/AvogadroCore.dir/unitcell.cpp.o CMakeFiles/AvogadroCore.dir/variantmap.cpp.o CMakeFiles/AvogadroCore.dir/version.cpp.o CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -Wl,-rpath,:::::::::: /usr/lib64/libsymspg.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroCore.so.1.97.0 ../../lib/libAvogadroCore.so.1 ../../lib/libAvogadroCore.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Built target AvogadroCore make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/calc/CMakeFiles/AvogadroCalc.dir/build.make avogadro/calc/CMakeFiles/AvogadroCalc.dir/depend /usr/bin/make -f avogadro/io/CMakeFiles/AvogadroIO.dir/build.make avogadro/io/CMakeFiles/AvogadroIO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc/CMakeFiles/AvogadroCalc.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io/CMakeFiles/AvogadroIO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/io/CMakeFiles/AvogadroIO.dir/build.make avogadro/io/CMakeFiles/AvogadroIO.dir/build /usr/bin/make -f avogadro/calc/CMakeFiles/AvogadroCalc.dir/build.make avogadro/calc/CMakeFiles/AvogadroCalc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/calc/CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/g++ -DAvogadroCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o -MF CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o.d -o CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/calc/CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/g++ -DAvogadroCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o -MF CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o.d -o CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/calc/CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/g++ -DAvogadroCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o -MF CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o.d -o CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h: In constructor ‘Avogadro::Calc::DefaultModel::DefaultModel(const std::string&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h:80:15: warning: ‘Avogadro::Calc::DefaultModel::m_identifier’ will be initialized after [-Wreorder] 80 | std::string m_identifier; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.cpp:18:35: warning: base ‘Avogadro::Calc::ChargeModel’ [-Wreorder] 18 | : m_identifier(id), ChargeModel() | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.cpp:17:1: warning: when initialized here [-Wreorder] 17 | DefaultModel::DefaultModel(const std::string& id) | ^~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Linking CXX shared library ../../lib/libAvogadroCalc.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroCalc.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroCalc.so.1 -o ../../lib/libAvogadroCalc.so.1.97.0 CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroCore.so.1.97.0 cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroCalc.so.1.97.0 ../../lib/libAvogadroCalc.so.1 ../../lib/libAvogadroCalc.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Built target AvogadroCalc make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cjsonformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/dcdformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cmlformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/fileformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -MF CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o.d -o CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.cpp: In function ‘void Avogadro::Io::{anonymous}::removeFromMap(Map&, const VectorOfKeys&, const ValueType&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.cpp:166:49: warning: typedef ‘KeysIter’ locally defined but not used [-Wunused-local-typedefs] 166 | typedef typename VectorOfKeys::const_iterator KeysIter; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.cpp: In member function ‘Avogadro::Io::GromacsFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.cpp:141:39: warning: ‘r’ may be used uninitialized [-Wmaybe-uninitialized] 141 | int atomicNum = r->getAtomicNumber(value); | ~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.cpp:57:12: note: ‘r’ was declared here 57 | Residue* r; | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mdlformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.cpp: In member function ‘Avogadro::Io::PdbFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.cpp:148:9: warning: ‘r’ may be used uninitialized [-Wmaybe-uninitialized] 148 | if (r) { | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.cpp:46:12: note: ‘r’ was declared here 46 | Residue* r; | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/vaspformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/trrformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/trrformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/xyzformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp: In member function ‘virtual bool Avogadro::Io::LammpsTrajectoryFormat::read(std::istream&, Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:51:25: warning: variable ‘id_idx’ set but not used [-Wunused-but-set-variable] 51 | type_idx = -1, id_idx = -1; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:263:5: warning: ‘numAtoms2’ may be used uninitialized [-Wmaybe-uninitialized] 263 | if (numAtoms2 != numAtoms) { | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:226:10: note: ‘numAtoms2’ was declared here 226 | size_t numAtoms2; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp: In member function ‘Avogadro::Io::LammpsDataFormat::write(std::basic_ostream >&, Avogadro::Core::Molecule const&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: ‘xmin’ may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:10: note: ‘xmin’ was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: ‘xmax’ may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:16: note: ‘xmax’ was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: ‘ymin’ may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:22: note: ‘ymin’ was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: ‘ymax’ may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:28: note: ‘ymax’ was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: ‘zmin’ may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:34: note: ‘zmin’ was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: ‘zmax’ may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:40: note: ‘zmax’ was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:10: In member function ‘Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)’, inlined from ‘Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function ‘Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:8: note: ‘a’ was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^ In member function ‘Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)’, inlined from ‘Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function ‘Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:11: note: ‘b’ was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^ In member function ‘Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)’, inlined from ‘Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: ‘c’ may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function ‘Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:14: note: ‘c’ was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^ In member function ‘Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)’, inlined from ‘Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: ‘alpha’ may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function ‘Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:17: note: ‘alpha’ was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^~~~~ In member function ‘Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)’, inlined from ‘Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: ‘beta’ may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function ‘Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:24: note: ‘beta’ was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^~~~ In member function ‘Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)’, inlined from ‘Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: ‘gamma’ may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function ‘Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:30: note: ‘gamma’ was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS 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-fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mmtfformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Linking CXX shared library ../../lib/libAvogadroIO.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroIO.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroIO.so.1 -o ../../lib/libAvogadroIO.so.1.97.0 CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o CMakeFiles/AvogadroIO.dir/fileformat.cpp.o CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o CMakeFiles/AvogadroIO.dir/trrformat.cpp.o CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroCore.so.1.97.0 ../../thirdparty/struct/libstruct.a /usr/lib64/libhdf5.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroIO.so.1 ../../lib/libAvogadroIO.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Built target AvogadroIO make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/depend /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/depend make[2]: Entering directory 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avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessus.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 21%] Linking CXX executable ../../bin/avobabel cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/avobabel.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/avobabel.dir/avobabel.cpp.o -o ../../bin/avobabel -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 21%] Built target avobabel make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd 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AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtgui/backgroundfileformat.h" AutoGen: Parsing "SRC:/avogadro/qtgui/colorbutton.h" AutoGen: Parsing "SRC:/avogadro/qtgui/containerwidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/customelementdialog.h" AutoGen: Parsing "SRC:/avogadro/qtgui/elementdetail_p.h" AutoGen: Parsing "SRC:/avogadro/qtgui/elementitem_p.h" AutoGen: Parsing "SRC:/avogadro/qtgui/elementtranslator.h" AutoGen: Parsing "SRC:/avogadro/qtgui/extensionplugin.h" AutoGen: Parsing "SRC:/avogadro/qtgui/filebrowsewidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/fileformatdialog.h" AutoGen: Parsing "SRC:/avogadro/qtgui/generichighlighter.h" AutoGen: Parsing "SRC:/avogadro/qtgui/hydrogentools.h" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacescript.h" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacewidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/jsonwidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/layermodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/meshgenerator.h" AutoGen: Parsing "SRC:/avogadro/qtgui/molecule.h" AutoGen: Parsing "SRC:/avogadro/qtgui/moleculemodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/multiviewwidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictablescene_p.h" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictableview.h" AutoGen: Parsing "SRC:/avogadro/qtgui/persistentatom.h" AutoGen: Parsing "SRC:/avogadro/qtgui/persistentbond.h" AutoGen: Parsing "SRC:/avogadro/qtgui/pluginlayermanager.h" AutoGen: Parsing "SRC:/avogadro/qtgui/pythonscript.h" AutoGen: Parsing "SRC:/avogadro/qtgui/rwlayermanager.h" AutoGen: Parsing "SRC:/avogadro/qtgui/rwmolecule.h" AutoGen: Parsing "SRC:/avogadro/qtgui/sceneplugin.h" AutoGen: Parsing "SRC:/avogadro/qtgui/scenepluginmodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/scriptloader.h" AutoGen: Parsing "SRC:/avogadro/qtgui/toolplugin.h" AutoGen: Parsing "SRC:/avogadro/qtgui/utilities.h" AutoGen: Parsing "SRC:/avogadro/qtgui/viewfactory.h" AutoGen: Parsing "SRC:/avogadro/qtgui/backgroundfileformat.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/colorbutton.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/containerwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/customelementdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/elementdetail_p.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/elementitem_p.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/elementtranslator.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/extensionplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/filebrowsewidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/fileformatdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/generichighlighter.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/hydrogentools.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacescript.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacewidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/jsonwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/layermodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/meshgenerator.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/molecule.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/moleculemodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/multiviewwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictablescene_p.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictableview.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/pluginlayermanager.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/pythonscript.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/rwlayermanager.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/rwmolecule.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/sceneplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/scenepluginmodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/scriptloader.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/toolplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/utilities.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/viewfactory.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/backgroundfileformat.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/backgroundfileformat.h AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/colorbutton.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/containerwidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/customelementdialog.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/elementtranslator.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementtranslator.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/extensionplugin.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/filebrowsewidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/fileformatdialog.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/generichighlighter.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/interfacescript.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/interfacewidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/jsonwidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_layermodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/layermodel.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_layermodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/meshgenerator.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_layermodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_molecule.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/molecule.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_molecule.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/moleculemodel.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_molecule.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/multiviewwidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/periodictablescene_p.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictablescene_p.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/periodictableview.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictableview.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/pythonscript.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/rwmolecule.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/sceneplugin.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/scenepluginmodel.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/scriptloader.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/toolplugin.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/include/multiviewwidget.moc", because it doesn't exist, from "SRC:/avogadro/qtgui/multiviewwidget.cpp" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include/multiviewwidget.moc /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/include/multiviewwidget.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 21%] Built target AvogadroQtGui_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 21%] Generating ui_customelementdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/ui_customelementdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 21%] Generating qrc_qtgui.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/lib64/qt5/bin/rcc --name qtgui --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/qrc_qtgui.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/qtgui.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 21%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussianfchk.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussiancube.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 21%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp:4: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/../../../../../avogadro/qtgui/containerwidget.h:30:75: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 30 | explicit ContainerWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/../../../../../avogadro/qtgui/backgroundfileformat.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp:18: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/../../../../../avogadro/qtgui/multiviewwidget.h:33:75: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 33 | explicit MultiViewWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/backgroundfileformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/molden.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:30:75: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 30 | explicit ContainerWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qwidget.h:43, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:11: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/mopacaux.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.cpp: In member function ‘virtual void Avogadro::QtGui::ElementDetail::paint(QPainter*, const QStyleOptionGraphicsItem*, QWidget*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.cpp:72:29: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 72 | int pixelWidth = fm2.width(symbol); | ~~~~~~~~~^~~~~~~~ In file included from /usr/include/qt5/QtGui/QFontMetrics:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.cpp:12: /usr/include/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementitem_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementtranslator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp: In static member function ‘static QString Avogadro::QtGui::FileBrowseWidget::searchSystemPathForFile(const QString&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp:170:55: warning: ‘QString::SkipEmptyParts’ is deprecated [-Wdeprecated-declarations] 170 | .split(pathSplitter, QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobject.h:47, from /usr/include/qt5/QtWidgets/qwidget.h:45, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp:6: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp:170:55: warning: ‘QString::SkipEmptyParts’ is deprecated [-Wdeprecated-declarations] 170 | .split(pathSplitter, QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp:170:31: warning: ‘QStringList QString::split(const QRegExp&, SplitBehavior) const’ is deprecated: Use split(const QRegularExpression &, Qt::SplitBehavior) variant instead [-Wdeprecated-declarations] 169 | QStringList paths = env.value(QStringLiteral("PATH")) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | .split(pathSplitter, QString::SkipEmptyParts); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:622:17: note: declared here 622 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp In file included from /usr/include/eigen3/Eigen/Core:257, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp:8: In member function ‘Eigen::internal::mul_assign_op::assignCoeff(double&, double const&) const’, inlined from ‘Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeff(long)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:660:26, inlined from ‘Eigen::internal::copy_using_evaluator_LinearTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 0, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:247:23, inlined from ‘Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 1, 2>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:528:106, inlined from ‘Eigen::internal::call_dense_assignment_loop, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘Eigen::internal::Assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘Eigen::internal::call_assignment_no_alias, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘Eigen::internal::call_assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from ‘Eigen::DenseBase >::operator*=(double const&)’ at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28, inlined from ‘Avogadro::QuantumIO::NWChemJson::read(std::basic_istream >&, Avogadro::Core::Molecule&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp:138:21: /usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: ‘MEM [(struct DenseStorage *)&position]’ may be used uninitialized [-Wmaybe-uninitialized] 92 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; } | ~~^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp: In member function ‘Avogadro::QuantumIO::NWChemJson::read(std::basic_istream >&, Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp:133:15: note: ‘MEM [(struct DenseStorage *)&position]’ was declared here 133 | Vector3 position; | ^~~~~~~~ In member function ‘Eigen::internal::mul_assign_op::assignCoeff(double&, double const&) const’, inlined from ‘Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeff(long)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:660:26, inlined from ‘Eigen::internal::copy_using_evaluator_LinearTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 1, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:247:23, inlined from ‘Eigen::internal::copy_using_evaluator_LinearTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 0, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::inmake[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' ternal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:248:87, inlined from ‘Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 1, 2>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:528:106, inlined from ‘Eigen::internal::call_dense_assignment_loop, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘Eigen::internal::Assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘Eigen::internal::call_assignment_no_alias, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘Eigen::internal::call_assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from ‘Eigen::DenseBase >::operator*=(double const&)’ at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28, inlined from ‘Avogadro::QuantumIO::NWChemJson::read(std::basic_istream >&, Avogadro::Core::Molecule&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp:138:21: /usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: ‘MEM [(struct DenseStorage *)&position + 8B]’ may be used uninitialized [-Wmaybe-uninitialized] 92 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; } | ~~^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp: In member function ‘Avogadro::QuantumIO::NWChemJson::read(std::basic_istream >&, Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp:133:15: note: ‘MEM [(struct DenseStorage *)&position + 8B]’ was declared here 133 | Vector3 position; | ^~~~~~~~ In member function ‘Eigen::internal::mul_assign_op::assignCoeff(double&, double const&) const’, inlined from ‘Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeff(long)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:660:26, inlined from ‘Eigen::internal::copy_using_evaluator_LinearTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 2, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:247:23, inlined from ‘Eigen::internal::copy_using_evaluator_LinearTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 1, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:248:87, inlined from ‘Eigen::internal::copy_using_evaluator_LinearTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 0, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:248:87, inlined from ‘Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 1, 2>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:528:106, inlined from ‘Eigen::internal::call_dense_assignment_loop, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘Eigen::internal::Assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘Eigen::internal::call_assignment_no_alias, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘Eigen::internal::call_assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from ‘Eigen::DenseBase >::operator*=(double const&)’ at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28, inlined from ‘Avogadro::QuantumIO::NWChemJson::read(std::basic_istream >&, Avogadro::Core::Molecule&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp:138:21: /usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: ‘MEM [(struct DenseStorage *)&position + 16B]’ may be used uninitialized [-Wmaybe-uninitialized] 92 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; } | ~~^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp: In member function ‘Avogadro::QuantumIO::NWChemJson::read(std::basic_istream >&, Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp:133:15: note: ‘MEM [(struct DenseStorage *)&position + 16B]’ was declared here 133 | Vector3 position; | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemlog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp: In static member function ‘static QString Avogadro::QtGui::FileFormatDialog::generateFilterString(const std::vector&, FilterStringOptions)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:227:28: warning: ‘QList QMap::values(const Key&) const [with Key = QString; T = QString]’ is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 227 | if (!formatMap.values(name).contains(ext)) { | ~~~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/qt5/QtCore/qvariant.h:47, from /usr/include/qt5/QtGui/qtextformat.h:48, from /usr/include/qt5/QtGui/qtextcursor.h:46, from /usr/include/qt5/QtWidgets/qlineedit.h:45, from /usr/include/qt5/QtWidgets/qinputdialog.h:45, from /usr/include/qt5/QtWidgets/QInputDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:11: /usr/include/qt5/QtCore/qmap.h:1360:10: note: declared here 1360 | QList QMap::values(const Key &key) const | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:228:30: warning: ‘QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]’ is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 228 | formatMap.insertMulti(name, ext); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ In file included from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qfiledialog.h:43, from /usr/include/qt5/QtWidgets/QFileDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:247:53: warning: ‘QList QMap::uniqueKeys() const [with Key = QString; T = QString]’ is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 247 | foreach (const QString& desc, formatMap.uniqueKeys()) { | ~~~~~~~~~~~~~~~~~~~~^~ /usr/include/qt5/QtCore/qmap.h:1354:12: note: declared here 1354 | QList QMap::uniqueKeys() const | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:249:52: warning: ‘QList QMap::values(const Key&) const [with Key = QString; T = QString]’ is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 249 | QStringList formatExtensions = formatMap.values(desc); | ~~~~~~~~~~~~~~~~^~~~~~ /usr/include/qt5/QtCore/qmap.h:1360:10: note: declared here 1360 | QList QMap::values(const Key &key) const | ^~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp: In member function ‘virtual void Avogadro::QtGui::GenericHighlighter::highlightBlock(const QString&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp:70:33: warning: typedef ‘RuleIter’ locally defined but not used [-Wunused-local-typedefs] 70 | typedef QList::iterator RuleIter; | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp: In member function ‘void Avogadro::QtGui::GenericHighlighter::Rule::apply(const QString&, Avogadro::QtGui::GenericHighlighter&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp:78:36: warning: typedef ‘PatternIter’ locally defined but not used [-Wunused-local-typedefs] 78 | typedef QList::iterator PatternIter; | ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.cpp: In static member function ‘static void Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const Avogadro::QtGui::RWAtom&, int, std::vector, std::allocator > >&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.cpp:230:13: warning: unused variable ‘explicitBonds’ [-Wunused-variable] 230 | const int explicitBonds = bonds.size(); | ^~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Linking CXX shared library ../../lib/libAvogadroQuantumIO.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroQuantumIO.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQuantumIO.so.1 -o ../../lib/libAvogadroQuantumIO.so.1.97.0 CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQuantumIO.so.1.97.0 ../../lib/libAvogadroQuantumIO.so.1 ../../lib/libAvogadroQuantumIO.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 25%] Built target AvogadroQuantumIO make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command/CMakeFiles/qube.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 25%] Building CXX object avogadro/command/CMakeFiles/qube.dir/qube.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/command/CMakeFiles/qube.dir/qube.cpp.o -MF CMakeFiles/qube.dir/qube.cpp.o.d -o CMakeFiles/qube.dir/qube.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command/qube.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Linking CXX executable ../../bin/qube cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/qube.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/qube.dir/qube.cpp.o -o ../../bin/qube -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib ../../lib/libAvogadroQuantumIO.so.1.97.0 ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Built target qube make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.cpp: In member function ‘void Avogadro::QtGui::InterfaceWidget::showError(const QString&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.cpp:78:32: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 78 | int charWidth = metrics.width(QStringLiteral("i7OPlmWn9/")) / 10; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/qwidget.h:50, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.h:13, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.cpp:6: /usr/include/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp: In member function ‘virtual QVariant Avogadro::QtGui::LayerModel::data(const QModelIndex&, int) const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp:59:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 59 | if (idx.row() == names.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp:80:21: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 80 | if (layer == static_cast(getMoleculeLayer().activeLayer())) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp: In member function ‘virtual QModelIndex Avogadro::QtGui::LayerModel::index(int, int, const QModelIndex&) const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp:161:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 161 | if (row >= 0 && row <= m_item) | ~~~~^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp: In member function ‘void Avogadro::QtGui::LayerModel::removeItem(int, Avogadro::QtGui::RWMolecule*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp:210:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 210 | if (row <= m_item) { | ~~~~^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h: In constructor ‘Avogadro::QtGui::Molecule::Molecule(QObject*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:262:15: warning: ‘Avogadro::QtGui::Molecule::m_undoMolecule’ will be initialized after [-Wreorder] 262 | RWMolecule* m_undoMolecule; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.cpp:17:65: warning: base ‘Avogadro::Core::Molecule’ [-Wreorder] 17 | m_undoMolecule(new RWMolecule(*this, this)), Core::Molecule() | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.cpp:15:1: warning: when initialized here [-Wreorder] 15 | Molecule::Molecule(QObject* parent_) | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:33:75: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 33 | explicit MultiViewWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qwidget.h:43, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:11: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.cpp:7: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:30:75: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 30 | explicit ContainerWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h: In member function ‘Avogadro::QtGui::ContainerWidget* Avogadro::QtGui::MultiViewWidget::createContainer(QWidget*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:30:75: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 30 | explicit ContainerWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictablescene_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictableview.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pluginlayermanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/qrc_qtgui.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/viewfactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Linking CXX shared library ../../lib/libAvogadroQtGui.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroQtGui.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtGui.so.1 -o ../../lib/libAvogadroQtGui.so.1.97.0 CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroIO.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 ../../lib/libAvogadroCore.so.1.97.0 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtGui.so.1.97.0 ../../lib/libAvogadroQtGui.so.1 ../../lib/libAvogadroQtGui.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Built target AvogadroQtGui make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/depend /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Automatic MOC for target AvogadroQtOpenGL cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtopengl/activeobjects.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/glwidget.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/qttextrenderstrategy.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/activeobjects.cpp" AutoGen: Parsing "SRC:/avogadro/qtopengl/glwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtopengl/qttextrenderstrategy.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp", because it doesn't exist, from "SRC:/avogadro/qtopengl/activeobjects.h" /usr/lib64/qt5/bin/moc -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/activeobjects.h AutoMoc: Generating "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtopengl/glwidget.h" /usr/lib64/qt5/bin/moc -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Built target AvogadroQtOpenGL_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Automatic MOC for target QTAIMScenePlugin cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimengine.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimengine.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/qtaim/qtaimengine.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimengine.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Built target QTAIMScenePlugin_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Automatic MOC for target ThreeDMol cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmol.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmol.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/3dmol/3dmol.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmol.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmoldialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Built target ThreeDMol_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Automatic MOC for target AvogadroMoleQueue cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/molequeue/batchjob.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/client.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jobobject.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jsonrpcclient.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgenerator.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratordialog.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratorwidget.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuedialog.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuemanager.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuequeuelistmodel.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuewidget.h" AutoGen: Parsing "SRC:/avogadro/molequeue/batchjob.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/client.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jobobject.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jsonrpcclient.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgenerator.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratordialog.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratorwidget.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuedialog.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuemanager.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuequeuelistmodel.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuewidget.cpp" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/batchjob.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_client.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/client/client.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_client.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_client.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/client/jsonrpcclient.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgenerator.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgeneratordialog.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgeneratorwidget.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuedialog.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuemanager.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuemanager.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuequeuelistmodel.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuewidget.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Built target AvogadroMoleQueue_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 31%] Automatic MOC for target ApplyColors cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/applycolors/applycolors.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/applycolors/applycolors.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/applycolors/applycolors.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors/applycolors.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 31%] Built target ApplyColors_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 31%] Automatic MOC for target Bonding cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/bonding/bonding.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/bonding/bonding.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/bonding/BondingPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/bonding/bonding.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding/bonding.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/bonding/BondingPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/BondingPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 32%] Built target Bonding_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 32%] Automatic MOC for target Cartoons cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/cartoons/cartoons.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/cartoons/cartoons.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cartoons/cartoons.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons/cartoons.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 32%] Built target Cartoons_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 32%] Automatic MOC for target CoordinateEditor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Built target CoordinateEditor_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Automatic MOC for target CopyPaste cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/copypaste/copypaste.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/copypaste/copypaste.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/copypaste/copypaste.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste/copypaste.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Built target CopyPaste_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Automatic MOC for target CrystalScene cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystalscene.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystalscene.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/crystalscene.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Built target CrystalScene_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Automatic MOC for target Crystal cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystal.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/supercelldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/unitcelldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystal.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/supercelldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/unitcelldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/crystal.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystal.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/importcrystaldialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/supercelldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/supercelldialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/unitcelldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/volumescalingdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target Crystal_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target CustomElements cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/customelements/customelements.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/customelements/customelements.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/customelements/customelements.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements/customelements.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target CustomElements_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target FetchPDB cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb/fetchpdb.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target FetchPDB_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target Editor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editor.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editortoolwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editor.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editortoolwidget.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/editor/EditorPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/editor/editor.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editor.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/editor/editortoolwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/editor/EditorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/EditorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target Editor_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target Focus cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/focus/focus.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/focus/focus.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/focus/FocusPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/focus/focus.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus/focus.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/focus/FocusPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/FocusPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target Focus_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target Hydrogens cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/hydrogens/hydrogens.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/hydrogens/hydrogens.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/hydrogens/hydrogens.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens/hydrogens.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target Hydrogens_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 36%] Automatic MOC for target NucleicInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/insertdna/insertdna.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertdna/insertdna.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertdna/insertdna.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 36%] Built target NucleicInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target ImportPQR cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/importpqr.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrrequest.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/importpqr.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrrequest.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrwidget.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/importpqr.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/importpqr.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/pqrrequest.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/pqrwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 37%] Built target ImportPQR_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 37%] Automatic MOC for target InsertFragment cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragment.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragmentdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragment.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragmentdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/insertfragment.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/insertfragmentdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target Label cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/label/label.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/label/label.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/label/LabelPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/label/label.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/label/LabelPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/label/Label_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target InsertFragment_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target Label_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target LabelEditor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/label/labeleditor.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/label/labeleditor.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/label/labeleditor.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/labeleditor.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target LabelEditor_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target LammpsInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinput.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target LammpsInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target LineFormatInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target LineFormatInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target MolecularProperties cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties/molecularproperties.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 39%] Built target MolecularProperties_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target NetworkDatabases cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases/networkdatabases.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target NetworkDatabases_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 39%] Automatic MOC for target MongoChem cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/calculationsubmitter.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/calculationwatcher.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/configdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/girderrequest.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/listmoleculesmodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/mongochem.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/mongochemwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/submitcalculationdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/calculationsubmitter.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/calculationwatcher.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/configdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/girderrequest.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/listmoleculesmodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/mongochem.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/mongochemwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/submitcalculationdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/mongochem/MongoChemPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationwatcher.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/calculationwatcher.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationwatcher.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/calculationwatcher.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationsubmitter.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/calculationsubmitter.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationsubmitter.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/calculationsubmitter.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationsubmitter.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_configdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/configdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_configdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/configdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationwatcher.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_girderrequest.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/girderrequest.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_girderrequest.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/girderrequest.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_girderrequest.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_listmoleculesmodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/listmoleculesmodel.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_listmoleculesmodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/listmoleculesmodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_configdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochem.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/mongochem.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochem.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/mongochem.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_listmoleculesmodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochemwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/mongochemwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochemwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/mongochemwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochem.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_submitcalculationdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/submitcalculationdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_submitcalculationdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/submitcalculationdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochemwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include/MongoChemPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/mongochem/MongoChemPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include/MongoChemPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChemPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_submitcalculationdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include/MongoChemPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target MongoChem_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target OpenMMInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openmminput/openmminput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminput.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target OpenBabel cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obcharges.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obfileformat.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obprocess.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/openbabel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obcharges.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obfileformat.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obprocess.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/openbabel.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obforcefielddialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obprocess.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/openbabel.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obcharges.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obfileformat.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obfileformat.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target OpenMMInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target OpenBabel_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target PlayerTool cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/playertool/playertool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/playertool/playertool.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/playertool/playertool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target PlayerTool_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target POVRay cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/povray/povray.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/povray/povray.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/povray/POVRayPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/povray/povray.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray/povray.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/povray/POVRayPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRayPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target PropertyTables cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertymodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertytables.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertyview.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertymodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertytables.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertyview.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertymodel.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertytables.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertytables.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertyview.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target POVRay_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target PropertyTables_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target ResetView cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/resetview/resetview.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/resetview/resetview.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/resetview/resetview.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview/resetview.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target Select cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/select/select.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/select/select.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/select/SelectPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/select/select.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/select/SelectPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/SelectPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/select/Select_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target ResetView_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target Select_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target SpaceGroup cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/spacegroup/spacegroup.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/spacegroup/spacegroup.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spacegroup/spacegroup.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup/spacegroup.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target SpaceGroup_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target SVG cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/svg/svg.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/svg/svg.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/svg/SVGPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/svg/svg.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/svg/SVGPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVGPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target SVG_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target VRML cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/vrml/vrml.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vrml/vrml.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vrml/vrml.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml/vrml.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target VRML_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target Spectra cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/spectra.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationmodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/spectra.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationmodel.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spectra/spectra.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/spectra.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spectra/vibrationdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/include/SpectraPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include/SpectraPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/include/SpectraPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target Spectra_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target commands cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/commandscripts/command.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/commandscripts/command.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/commandscripts/command.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target commands_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target ScriptFileFormats cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/fileformatscript.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats/scriptfileformats.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target ScriptFileFormats_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target ScriptCharges cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptchargemodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptcharges.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Built target ScriptCharges_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Automatic MOC for target BallStick cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/ballandstick/ballandstick.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/ballandstick/ballandstick.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/ballandstick/ballandstick.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick/ballandstick.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Built target BallStick_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Automatic MOC for target PluginDownloader cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/zipextracter.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/zipextracter.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/downloaderwidget.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/plugindownloader.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Built target PluginDownloader_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 42%] Automatic MOC for target Force cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/force/force.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/force/force.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/force/ForcePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/force/force.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force/force.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/force/ForcePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/ForcePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/force/Force_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 42%] Built target Force_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Automatic MOC for target CloseContacts cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/closecontacts/closecontacts.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/closecontacts/closecontacts.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/closecontacts/closecontacts.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts/closecontacts.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Built target CloseContacts_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Automatic MOC for target Licorice cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/licorice/licorice.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/licorice/licorice.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/licorice/licorice.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice/licorice.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Built target Licorice_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Automatic MOC for target Meshes cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/meshes/meshes.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/meshes/meshes.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/meshes/meshes.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target Meshes_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target NonCovalent cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/noncovalent/noncovalent.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/noncovalent/noncovalent.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/noncovalent/noncovalent.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent/noncovalent.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target NonCovalent_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target VanDerWaals cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals/vanderwaals.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target VanDerWaals_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target VanDerWaalsAO cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAOPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/EWIEGA46WW/moc_vanderwaalsao.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/EWIEGA46WW/moc_vanderwaalsao.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include/VanDerWaalsAOPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAOPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include/VanDerWaalsAOPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAOPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/EWIEGA46WW/moc_vanderwaalsao.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include/VanDerWaalsAOPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target VanDerWaalsAO_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target Wireframe cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/wireframe/wireframe.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/wireframe/wireframe.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/wireframe/wireframe.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe/wireframe.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target Wireframe_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target QTAIMExtension cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcubature.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimextension.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimmathutilities.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimodeintegrator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunction.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcubature.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimextension.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimmathutilities.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/qtaim/qtaimextension.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimextension.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target QTAIMExtension_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target OverlayAxes cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include AutoGen: Parsing "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target OverlayAxes_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Generating ui_molequeuewidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/ui_molequeuewidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Generating ui_inputgeneratordialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/ui_inputgeneratordialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Generating ui_inputgeneratorwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/ui_inputgeneratorwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Generating ui_molequeuedialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/ui_molequeuedialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 45%] Building CXX object avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/g++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o -MF CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/../../../../../avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/g++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o -MF CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o.d -o CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/activeobjects.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/activeobjects.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/g++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o -MF CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o.d -o CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/g++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o -MF CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o.d -o CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/qttextrenderstrategy.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/qttextrenderstrategy.cpp: In function ‘Qt::Alignment {anonymous}::textPropertiesToAlignment(const Avogadro::Rendering::TextProperties&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/qttextrenderstrategy.cpp:32:26: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::AlignmentFlag; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 32 | Qt::Alignment result = nullptr; | ^~~~~~~ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtGui/qfont.h:43, from /usr/include/qt5/QtGui/QFont:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/qttextrenderstrategy.cpp:10: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Linking CXX shared library ../../lib/libAvogadroQtOpenGL.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroQtOpenGL.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtOpenGL.so.1 -o ../../lib/libAvogadroQtOpenGL.so.1.97.0 CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroRendering.so.1.97.0 ../../lib/libAvogadroQtGui.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libGLEW.so /usr/lib64/libGL.so /usr/lib64/libGLU.so ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtOpenGL.so.1.97.0 ../../lib/libAvogadroQtOpenGL.so.1 ../../lib/libAvogadroQtOpenGL.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Built target AvogadroQtOpenGL make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.cpp: In member function ‘void Avogadro::MoleQueue::InputGeneratorWidget::showError(const QString&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.cpp:398:32: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 398 | int charWidth = metrics.width("i7OPlmWn9/") / 10; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/qwidget.h:50, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.cpp:6: /usr/include/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimengine.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimengine.cpp:12: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -P CMakeFiles/QTAIMScenePlugin.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/QTAIMScenePlugin.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Built target QTAIMScenePlugin make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Generating ui_3dmoldialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ui_3dmoldialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmoldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -MF CMakeFiles/ThreeDMol.dir/3dmol.cpp.o.d -o CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmol.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -MF CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o.d -o CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmoldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -MF CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o.d -o CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ThreeDMol.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -P CMakeFiles/ThreeDMol.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_link_script CMakeFiles/ThreeDMol.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ThreeDMol.a CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o CMakeFiles/ThreeDMol.dir/3dmol.cpp.o CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ThreeDMol.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Built target ThreeDMol make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Generating ui_chargedialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ui_chargedialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors/chargedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/client/client.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/client/client.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/client/client.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/client/client.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/client/jobobject.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/client/jobobject.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/client/jobobject.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/client/jobobject.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jobobject.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/client/jsonrpcclient.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/client/jsonrpcclient.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/client/jsonrpcclient.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/client/jsonrpcclient.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/applycolors.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/applycolors.cpp.o -MF CMakeFiles/ApplyColors.dir/applycolors.cpp.o.d -o CMakeFiles/ApplyColors.dir/applycolors.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors/applycolors.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o -MF CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o.d -o CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ApplyColors.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -P CMakeFiles/ApplyColors.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_link_script CMakeFiles/ApplyColors.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ApplyColors.a CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o CMakeFiles/ApplyColors.dir/applycolors.cpp.o CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ApplyColors.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Built target ApplyColors make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Automatic MOC for target BondCentric cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Built target BondCentric_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Generating ui_bondingdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/ui_bondingdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding/bondingdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Linking CXX shared library ../../lib/libAvogadroMoleQueue.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroMoleQueue.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroMoleQueue.so.1 -o ../../lib/libAvogadroMoleQueue.so.1.97.0 CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o CMakeFiles/AvogadroMoleQueue.dir/client/client.cpp.o CMakeFiles/AvogadroMoleQueue.dir/client/jobobject.cpp.o CMakeFiles/AvogadroMoleQueue.dir/client/jsonrpcclient.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroQtGui.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Network.so.5.15.10 ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroMoleQueue.so.1.97.0 ../../lib/libAvogadroMoleQueue.so.1 ../../lib/libAvogadroMoleQueue.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Built target AvogadroMoleQueue make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o -MF CMakeFiles/Bonding.dir/bonding.cpp.o.d -o CMakeFiles/Bonding.dir/bonding.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding/bonding.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/BondingPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -MF CMakeFiles/Bonding.dir/BondingPlugin.cpp.o.d -o CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/BondingPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 51%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Bonding.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -P CMakeFiles/Bonding.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_link_script CMakeFiles/Bonding.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Bonding.a CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o 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/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make 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-I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/cartoons.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/cartoons.cpp.o -MF CMakeFiles/Cartoons.dir/cartoons.cpp.o.d -o CMakeFiles/Cartoons.dir/cartoons.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons/cartoons.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons/cartoons.cpp:15: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor ‘Avogadro::Rendering::Line::Line()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: ‘Avogadro::Rendering::Line::radius’ will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: ‘bool Avogadro::Rendering::Line::flat’ [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: ‘Avogadro::Rendering::Line::flat’ will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: ‘bool Avogadro::Rendering::Line::dirty’ [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor ‘Avogadro::Rendering::Line::Line(float)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: ‘Avogadro::Rendering::Line::radius’ will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: ‘bool Avogadro::Rendering::Line::dirty’ [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons/cartoons.cpp: In member function ‘void Avogadro::QtPlugins::LayerCartoon::setupWidget(Avogadro::QtPlugins::Cartoons*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons/cartoons.cpp:111:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 111 | for (size_t i = 0; i < boxesText.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o -MF CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o.d -o CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Cartoons.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -P CMakeFiles/Cartoons.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cartoons.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Cartoons.a CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o CMakeFiles/Cartoons.dir/cartoons.cpp.o CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Cartoons.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Built target Cartoons make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o -MF CMakeFiles/CopyPaste.dir/copypaste.cpp.o.d -o CMakeFiles/CopyPaste.dir/copypaste.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste/copypaste.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp: In member function ‘QString Avogadro::QtPlugins::CoordinateEditorDialog::detectInputFormat() const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:641:64: warning: ‘QString::SkipEmptyParts’ is deprecated [-Wdeprecated-declarations] 641 | QList tokens(sample.split(TOKEN_SEPARATOR, QString::SkipEmptyParts)); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobject.h:47, from /usr/include/qt5/QtWidgets/qwidget.h:45, from /usr/include/qt5/QtWidgets/qdialog.h:44, from /usr/include/qt5/QtWidgets/QDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:6: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:641:64: warning: ‘QString::SkipEmptyParts’ is deprecated [-Wdeprecated-declarations] 641 | QList tokens(sample.split(TOKEN_SEPARATOR, QString::SkipEmptyParts)); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:641:37: warning: ‘QStringList QString::split(const QRegExp&, SplitBehavior) const’ is deprecated: Use split(const QRegularExpression &, Qt::SplitBehavior) variant instead [-Wdeprecated-declarations] 641 | QList tokens(sample.split(TOKEN_SEPARATOR, QString::SkipEmptyParts)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:622:17: note: declared here 622 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ In member function ‘__ct ’, inlined from ‘QVector<(anonymous namespace)::AtomStruct>::append((anonymous namespace)::AtomStruct const&)’ at /usr/include/qt5/QtCore/qvector.h:793:13, inlined from ‘QVector<(anonymous namespace)::AtomStruct>::operator<<((anonymous namespace)::AtomStruct const&)’ at /usr/include/qt5/QtCore/qvector.h:293:13, inlined from ‘Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:476:28: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:93:8: warning: ‘atom.atomicNumber’ may be used uninitialized [-Wmaybe-uninitialized] 93 | struct AtomStruct | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp: In member function ‘Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:341:16: note: ‘atom.atomicNumber’ was declared here 341 | AtomStruct atom; | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o -MF CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o.d -o CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp: In constructor ‘Avogadro::QtPlugins::CoordinateTextEdit::CoordinateTextEdit(QWidget*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp:23:60: warning: ‘const QBrush& QPalette::foreground() const’ is deprecated: Use QPalette::windowText() instead [-Wdeprecated-declarations] 23 | m_unmarkedFormat.setForeground(qApp->palette().foreground().color()); | ^ In file included from /usr/include/qt5/QtWidgets/qwidget.h:48, from /usr/include/qt5/QtWidgets/qframe.h:44, from /usr/include/qt5/QtWidgets/qabstractscrollarea.h:44, from /usr/include/qt5/QtWidgets/qtextedit.h:44, from /usr/include/qt5/QtWidgets/QTextEdit:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp:6: /usr/include/qt5/QtGui/qpalette.h:147:26: note: declared here 147 | inline const QBrush &foreground() const { return windowText(); } | ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CopyPaste.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -P CMakeFiles/CopyPaste.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_link_script CMakeFiles/CopyPaste.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CopyPaste.a CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o CMakeFiles/CopyPaste.dir/copypaste.cpp.o CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CopyPaste.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Built target CopyPaste make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Generating ui_volumescalingdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/ui_volumescalingdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/volumescalingdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Generating ui_importcrystaldialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/ui_importcrystaldialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/importcrystaldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Generating ui_supercelldialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/ui_supercelldialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/supercelldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Generating ui_unitcelldialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/ui_unitcelldialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o -MF CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CoordinateEditor.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -P CMakeFiles/CoordinateEditor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_link_script CMakeFiles/CoordinateEditor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CoordinateEditor.a CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CoordinateEditor.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Built target CoordinateEditor make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/crystal.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/crystal.cpp.o -MF CMakeFiles/Crystal.dir/crystal.cpp.o.d -o CMakeFiles/Crystal.dir/crystal.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystal.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o -MF CMakeFiles/CrystalScene.dir/crystalscene.cpp.o.d -o CMakeFiles/CrystalScene.dir/crystalscene.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.cpp:13: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In file included from /usr/include/c++/13/vector:66, from /usr/include/c++/13/functional:64, from /usr/include/eigen3/Eigen/Core:85, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.cpp:6: In member function ‘std::vector, std::allocator > >::resize(unsigned long, Eigen::Matrix const&)’, inlined from ‘Avogadro::Core::Array >::resize(unsigned long const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:177:19, inlined from ‘Avogadro::QtPlugins::CrystalScene::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.cpp:79:17: /usr/include/c++/13/bits/stl_vector.h:1034:25: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1034 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72: /usr/include/c++/13/bits/vector.tcc: In member function ‘Avogadro::QtPlugins::CrystalScene::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’: /usr/include/c++/13/bits/vector.tcc:529:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector, std::allocator > >::_M_fill_insert(__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned long, Eigen::Matrix const&)’ declared here 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.cpp:79:17: note: ‘’ declared here 79 | strip.resize(2); | ~~~~~~~~~~~~^~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o -MF CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o.d -o CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CrystalScene.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -P CMakeFiles/CrystalScene.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_link_script CMakeFiles/CrystalScene.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CrystalScene.a CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o CMakeFiles/CrystalScene.dir/crystalscene.cpp.o CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CrystalScene.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Built target CrystalScene make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o -MF CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o.d -o CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/importcrystaldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o -MF CMakeFiles/CustomElements.dir/customelements.cpp.o.d -o CMakeFiles/CustomElements.dir/customelements.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements/customelements.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/supercelldialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/supercelldialog.cpp.o -MF CMakeFiles/Crystal.dir/supercelldialog.cpp.o.d -o CMakeFiles/Crystal.dir/supercelldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/supercelldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o -MF CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o.d -o CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CustomElements.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -P CMakeFiles/CustomElements.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_link_script CMakeFiles/CustomElements.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CustomElements.a CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o CMakeFiles/CustomElements.dir/customelements.cpp.o CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CustomElements.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Built target CustomElements make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Generating ui_editortoolwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/ui_editortoolwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Generating qrc_editor.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/lib64/qt5/bin/rcc --name editor --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/qrc_editor.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editor.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/unitcelldialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/unitcelldialog.cpp.o -MF CMakeFiles/Crystal.dir/unitcelldialog.cpp.o.d -o CMakeFiles/Crystal.dir/unitcelldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp: In static member function ‘static void Avogadro::QtPlugins::UnitCellDialog::initializeMatrixEditor(QPlainTextEdit*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp:308:35: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 308 | int minWidth = 3 * metrics.width('0') * (MATRIX_WIDTH + 1); | ~~~~~~~~~~~~~^~~~~ In file included from /usr/include/qt5/QtWidgets/qwidget.h:50, from /usr/include/qt5/QtWidgets/qdialog.h:44, from /usr/include/qt5/QtWidgets/QDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp:6: /usr/include/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp: In static member function ‘static Avogadro::Matrix3 Avogadro::QtPlugins::UnitCellDialog::stringToMatrix(const QString&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp:350:58: warning: ‘QString::SkipEmptyParts’ is deprecated [-Wdeprecated-declarations] 350 | QStringList values = line.split(MATRIX_SEP, QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobject.h:47, from /usr/include/qt5/QtWidgets/qwidget.h:45: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp:350:58: warning: ‘QString::SkipEmptyParts’ is deprecated [-Wdeprecated-declarations] 350 | QStringList values = line.split(MATRIX_SEP, QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp:350:36: warning: ‘QStringList QString::split(const QRegExp&, SplitBehavior) const’ is deprecated: Use split(const QRegularExpression &, Qt::SplitBehavior) variant instead [-Wdeprecated-declarations] 350 | QStringList values = line.split(MATRIX_SEP, QString::SkipEmptyParts); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:622:17: note: declared here 622 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o -MF CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o.d -o CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/volumescalingdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o -MF CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o.d -o CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Crystal.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -P CMakeFiles/Crystal.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_link_script CMakeFiles/Crystal.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Crystal.a CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o CMakeFiles/Crystal.dir/crystal.cpp.o CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o CMakeFiles/Crystal.dir/supercelldialog.cpp.o CMakeFiles/Crystal.dir/unitcelldialog.cpp.o CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Crystal.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Built target Crystal make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o -MF CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editor.cpp.o -MF CMakeFiles/Editor.dir/editor.cpp.o.d -o CMakeFiles/Editor.dir/editor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editor.cpp:19: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editortoolwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editortoolwidget.cpp.o -MF CMakeFiles/Editor.dir/editortoolwidget.cpp.o.d -o CMakeFiles/Editor.dir/editortoolwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.cpp: In member function ‘void Avogadro::QtPlugins::EditorToolWidget::updateElementCombo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.cpp:111:8: warning: ‘void qSort(Container&) [with Container = QList]’ is deprecated: Use std::sort [-Wdeprecated-declarations] 111 | qSort(allElements); | ~~~~~^~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qlist.h:43, from /usr/include/qt5/QtCore/qobject.h:49, from /usr/include/qt5/QtWidgets/qwidget.h:45, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.cpp:6: /usr/include/qt5/QtCore/qalgorithms.h:188:46: note: declared here 188 | QT_DEPRECATED_X("Use std::sort") inline void qSort(Container &c) | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/qrc_editor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/qrc_editor.cpp.o -MF CMakeFiles/Editor.dir/qrc_editor.cpp.o.d -o CMakeFiles/Editor.dir/qrc_editor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/qrc_editor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o -MF CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o.d -o CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb/fetchpdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o -MF CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o.d -o CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Linking CXX static library ../../../lib/avogadro2/staticplugins/FetchPDB.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -P CMakeFiles/FetchPDB.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/FetchPDB.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/FetchPDB.a CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/FetchPDB.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Built target FetchPDB make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/EditorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/EditorPlugin.cpp.o -MF CMakeFiles/Editor.dir/EditorPlugin.cpp.o.d -o CMakeFiles/Editor.dir/EditorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/EditorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Editor.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -P CMakeFiles/Editor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Editor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Editor.a CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o CMakeFiles/Editor.dir/editor.cpp.o CMakeFiles/Editor.dir/editortoolwidget.cpp.o CMakeFiles/Editor.dir/qrc_editor.cpp.o CMakeFiles/Editor.dir/EditorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Editor.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Built target Editor make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/focus/focus.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp:2: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/focus.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/focus.cpp.o -MF CMakeFiles/Focus.dir/focus.cpp.o.d -o CMakeFiles/Focus.dir/focus.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus/focus.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus/focus.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus/focus.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydrogens.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydrogens.cpp.o -MF CMakeFiles/Hydrogens.dir/hydrogens.cpp.o.d -o CMakeFiles/Hydrogens.dir/hydrogens.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens/hydrogens.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o -MF CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o.d -o CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Hydrogens.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -P CMakeFiles/Hydrogens.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_link_script CMakeFiles/Hydrogens.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Hydrogens.a CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o CMakeFiles/Hydrogens.dir/hydrogens.cpp.o CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Hydrogens.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Built target Hydrogens make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Generating ui_pqrwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ui_pqrwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/FocusPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/FocusPlugin.cpp.o -MF CMakeFiles/Focus.dir/FocusPlugin.cpp.o.d -o CMakeFiles/Focus.dir/FocusPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/FocusPlugin.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus/focus.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/FocusPlugin.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Focus.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/cmake -P CMakeFiles/Focus.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_link_script CMakeFiles/Focus.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Focus.a CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o CMakeFiles/Focus.dir/focus.cpp.o CMakeFiles/Focus.dir/FocusPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Focus.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Built target Focus make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Generating ui_insertdnadialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/ui_insertdnadialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdnadialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/importpqr.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/importpqr.cpp.o -MF CMakeFiles/ImportPQR.dir/importpqr.cpp.o.d -o CMakeFiles/ImportPQR.dir/importpqr.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/importpqr.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o -MF CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o.d -o CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/insertdna.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/insertdna.cpp.o -MF CMakeFiles/NucleicInput.dir/insertdna.cpp.o.d -o CMakeFiles/NucleicInput.dir/insertdna.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.h: In constructor ‘Avogadro::QtPlugins::InsertDna::InsertDna(QObject*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.h:55:19: warning: ‘Avogadro::QtPlugins::InsertDna::m_reader’ will be initialized after [-Wreorder] 55 | Io::FileFormat* m_reader; | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.h:54:20: warning: ‘Avogadro::QtGui::Molecule* Avogadro::QtPlugins::InsertDna::m_molecule’ [-Wreorder] 54 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.cpp:39:1: warning: when initialized here [-Wreorder] 39 | InsertDna::InsertDna(QObject* parent_) | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.cpp: In member function ‘void Avogadro::QtPlugins::InsertDna::performInsert()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.cpp:208:10: warning: unused variable ‘success’ [-Wunused-variable] 208 | bool success = m_reader->readString(sequence.toStdString(), newMol); | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o -MF CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o.d -o CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NucleicInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -P CMakeFiles/NucleicInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_link_script CMakeFiles/NucleicInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NucleicInput.a CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o CMakeFiles/NucleicInput.dir/insertdna.cpp.o CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NucleicInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Built target NucleicInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Generating ui_insertfragmentdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/ui_insertfragmentdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o -MF CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/insertfragment/insertfragmentdialog.h:28:53: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 28 | Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/insertfragment/insertfragment.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o -MF CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o.d -o CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.cpp: In member function ‘QString Avogadro::QtPlugins::PQRRequest::molSelected(int)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.cpp:77:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 77 | if (results.empty() || num > results.size()) | ~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.cpp: In member function ‘float Avogadro::QtPlugins::PQRRequest::getMolMass(QString)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.cpp:205:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 205 | for (int i = 0; i < str.length(); i++) { | ~~^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o -MF CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o.d -o CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ImportPQR.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -P CMakeFiles/ImportPQR.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_link_script CMakeFiles/ImportPQR.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ImportPQR.a CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o CMakeFiles/ImportPQR.dir/importpqr.cpp.o CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ImportPQR.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Built target ImportPQR make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragment.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragment.cpp.o -MF CMakeFiles/InsertFragment.dir/insertfragment.cpp.o.d -o CMakeFiles/InsertFragment.dir/insertfragment.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:7: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h:28:53: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 28 | Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h: In constructor ‘Avogadro::QtPlugins::InsertFragment::InsertFragment(QObject*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h:50:25: warning: ‘Avogadro::QtPlugins::InsertFragment::m_crystalDialog’ will be initialized after [-Wreorder] 50 | InsertFragmentDialog* m_crystalDialog; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h:49:25: warning: ‘Avogadro::QtPlugins::InsertFragmentDialog* Avogadro::QtPlugins::InsertFragment::m_moleculeDialog’ [-Wreorder] 49 | InsertFragmentDialog* m_moleculeDialog; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:28:1: warning: when initialized here [-Wreorder] 28 | InsertFragment::InsertFragment(QObject* parent_) | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h:55:19: warning: ‘Avogadro::QtPlugins::InsertFragment::m_reader’ will be initialized after [-Wreorder] 55 | Io::FileFormat* m_reader; | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h:54:20: warning: ‘Avogadro::QtGui::Molecule* Avogadro::QtPlugins::InsertFragment::m_molecule’ [-Wreorder] 54 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:28:1: warning: when initialized here [-Wreorder] 28 | InsertFragment::InsertFragment(QObject* parent_) | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h: In member function ‘void Avogadro::QtPlugins::InsertFragment::showDialog()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h:28:53: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 28 | Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h:28:53: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 28 | Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o -MF CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o.d -o CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.cpp:17: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h:28:53: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 28 | Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qdialog.h:43, from /usr/include/qt5/QtWidgets/QDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o -MF CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o.d -o CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o -MF CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o.d -o CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Linking CXX static library ../../../lib/avogadro2/staticplugins/InsertFragment.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -P CMakeFiles/InsertFragment.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_link_script CMakeFiles/InsertFragment.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/InsertFragment.a CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o CMakeFiles/InsertFragment.dir/insertfragment.cpp.o CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/InsertFragment.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Built target InsertFragment make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Generating qrc_label.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/lib64/qt5/bin/rcc --name label --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/qrc_label.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/label.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/label.cpp.o -MF CMakeFiles/Label.dir/label.cpp.o.d -o CMakeFiles/Label.dir/label.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp:13: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp: In member function ‘virtual std::string Avogadro::QtPlugins::LayerLabel::serialize()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp:98:23: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 98 | std::string aux = (const char*)atomOptions; | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp:99:24: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 99 | std::string aux2 = (const char*)residueOptions; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp: In member function ‘void Avogadro::QtPlugins::LayerLabel::setupWidget(Avogadro::QtPlugins::Label*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp:182:11: warning: variable ‘index’ set but not used [-Wunused-but-set-variable] 182 | int index = atom->findData(int(atomOptions)); | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/LabelPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/LabelPlugin.cpp.o -MF CMakeFiles/Label.dir/LabelPlugin.cpp.o.d -o CMakeFiles/Label.dir/LabelPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Label.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -P CMakeFiles/Label.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_link_script CMakeFiles/Label.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Label.a CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o CMakeFiles/Label.dir/label.cpp.o CMakeFiles/Label.dir/LabelPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Label.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Built target Label make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Generating ui_lammpsinputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/ui_lammpsinputdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui: Warning: Tab-stop assignment: 'moreButton' is not a valid widget. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui: Warning: Tab-stop assignment: 'previewText' is not a valid widget. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/lammpsinput/lammpsinputdialog.h:29:53: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/lammpsinput/lammpsinput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/labeleditor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/labeleditor.cpp.o -MF CMakeFiles/LabelEditor.dir/labeleditor.cpp.o.d -o CMakeFiles/LabelEditor.dir/labeleditor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/labeleditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/labeleditor.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/qrc_label.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/qrc_label.cpp.o -MF CMakeFiles/LabelEditor.dir/qrc_label.cpp.o.d -o CMakeFiles/LabelEditor.dir/qrc_label.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/qrc_label.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o -MF CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o.d -o CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LabelEditor.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -P CMakeFiles/LabelEditor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_link_script CMakeFiles/LabelEditor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LabelEditor.a CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o CMakeFiles/LabelEditor.dir/labeleditor.cpp.o CMakeFiles/LabelEditor.dir/qrc_label.cpp.o CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LabelEditor.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Built target LabelEditor make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Generating ui_lineformatinputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/ui_lineformatinputdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o -MF CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o.d -o CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h:29:53: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qatomic.h:41, from /usr/include/qt5/QtCore/qvariant.h:43, from /usr/include/qt5/QtCore/QVariant:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/ui_lammpsinputdialog.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp: In member function ‘QString Avogadro::QtPlugins::LammpsInputDialog::generateInputDeck()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:628:42: warning: ‘QTextStream& QTextStreamFunctions::fixed(QTextStream&)’ is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 628 | mol << "velocity all create " << fixed << qSetRealNumberPrecision(2) | ^~~~~ In file included from /usr/include/qt5/QtCore/qdebug.h:49, from /usr/include/qt5/QtCore/QDebug:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:21: /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:635:31: warning: ‘QTextStream& QTextStreamFunctions::fixed(QTextStream&)’ is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 635 | mol << "timestep " << fixed << qSetRealNumberPrecision(1) << m_timeStep | ^~~~~ /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp: In member function ‘QString Avogadro::QtPlugins::LammpsInputDialog::getEnsemble(ensemble)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:856:26: warning: ‘QTextStream& QTextStreamFunctions::fixed(QTextStream&)’ is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 856 | << " temp " << fixed << qSetRealNumberPrecision(2) << m_temperature | ^~~~~ /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:857:21: warning: ‘QTextStream& QTextStreamFunctions::fixed(QTextStream&)’ is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 857 | << " " << fixed << qSetRealNumberPrecision(2) << m_temperature | ^~~~~ /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:872:26: warning: ‘QTextStream& QTextStreamFunctions::fixed(QTextStream&)’ is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 872 | << " temp " << fixed << qSetRealNumberPrecision(2) << m_temperature | ^~~~~ /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:873:21: warning: ‘QTextStream& QTextStreamFunctions::fixed(QTextStream&)’ is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 873 | << " " << fixed << qSetRealNumberPrecision(2) << m_temperature | ^~~~~ /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o -MF CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o.d -o CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinput.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinput.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h:29:53: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinput.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h: In member function ‘void Avogadro::QtPlugins::LammpsInput::menuActivated()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h:29:53: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o -MF CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o.d -o CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.h: In constructor ‘Avogadro::QtPlugins::LineFormatInput::LineFormatInput(QObject*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.h:48:19: warning: ‘Avogadro::QtPlugins::LineFormatInput::m_reader’ will be initialized after [-Wreorder] 48 | Io::FileFormat* m_reader; | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.h:47:20: warning: ‘Avogadro::QtGui::Molecule* Avogadro::QtPlugins::LineFormatInput::m_molecule’ [-Wreorder] 47 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp:27:1: warning: when initialized here [-Wreorder] 27 | LineFormatInput::LineFormatInput(QObject* parent_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp: In member function ‘void Avogadro::QtPlugins::LineFormatInput::showDialog()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp:128:8: warning: unused variable ‘success’ [-Wunused-variable] 128 | bool success = m_reader->readString(m_descriptor, newMol); | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o -MF CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o.d -o CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LammpsInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -P CMakeFiles/LammpsInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/LammpsInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LammpsInput.a CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LammpsInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Built target LammpsInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Automatic MOC for target Manipulator cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/manipulator/manipulator.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/manipulator/manipulator.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/manipulator/manipulator.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Built target Manipulator_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Automatic MOC for target MeasureTool cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/measuretool/measuretool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/measuretool/measuretool.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/measuretool/measuretool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Built target MeasureTool_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Generating ui_molecularpropertiesdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/ui_molecularpropertiesdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o -MF CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o.d -o CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o -MF CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o.d -o CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 64%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LineFormatInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -P CMakeFiles/LineFormatInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/LineFormatInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LineFormatInput.a CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LineFormatInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 64%] Built target LineFormatInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Generating ui_submitcalculationdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/ui_submitcalculationdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/submitcalculationdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Generating ui_configdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/ui_configdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/configdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Generating ui_mongochemwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/ui_mongochemwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/mongochemwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o -MF CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o.d -o CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties/molecularproperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/MongoChem_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/MongoChem_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MongoChem.dir/MongoChem_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MongoChem.dir/MongoChem_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o -MF CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o.d -o CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/mongochem.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/mongochem.cpp.o -MF CMakeFiles/MongoChem.dir/mongochem.cpp.o.d -o CMakeFiles/MongoChem.dir/mongochem.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/mongochem.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o -MF CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o.d -o CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MolecularProperties.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -P CMakeFiles/MolecularProperties.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolecularProperties.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MolecularProperties.a CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MolecularProperties.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Built target MolecularProperties make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Automatic MOC for target Navigator cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/navigator/navigator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/navigator/navigator.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/navigator/navigator.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Built target Navigator_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/mongochemwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/mongochemwidget.cpp.o -MF CMakeFiles/MongoChem.dir/mongochemwidget.cpp.o.d -o CMakeFiles/MongoChem.dir/mongochemwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/mongochemwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o -MF CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases/networkdatabases.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/girderrequest.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/girderrequest.cpp.o -MF CMakeFiles/MongoChem.dir/girderrequest.cpp.o.d -o CMakeFiles/MongoChem.dir/girderrequest.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/girderrequest.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB 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/usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o -MF CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NetworkDatabases.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -P CMakeFiles/NetworkDatabases.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_link_script CMakeFiles/NetworkDatabases.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NetworkDatabases.a CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NetworkDatabases.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Built target NetworkDatabases make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/configdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/configdialog.cpp.o -MF CMakeFiles/MongoChem.dir/configdialog.cpp.o.d -o CMakeFiles/MongoChem.dir/configdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/configdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/listmoleculesmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/listmoleculesmodel.cpp.o -MF CMakeFiles/MongoChem.dir/listmoleculesmodel.cpp.o.d -o CMakeFiles/MongoChem.dir/listmoleculesmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/listmoleculesmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/calculationwatcher.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/calculationwatcher.cpp.o -MF CMakeFiles/MongoChem.dir/calculationwatcher.cpp.o.d -o CMakeFiles/MongoChem.dir/calculationwatcher.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/calculationwatcher.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/calculationsubmitter.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/calculationsubmitter.cpp.o -MF CMakeFiles/MongoChem.dir/calculationsubmitter.cpp.o.d -o CMakeFiles/MongoChem.dir/calculationsubmitter.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/calculationsubmitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/MongoChemPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/MongoChemPlugin.cpp.o -MF CMakeFiles/MongoChem.dir/MongoChemPlugin.cpp.o.d -o CMakeFiles/MongoChem.dir/MongoChemPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChemPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Generating ui_obforcefielddialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/ui_obforcefielddialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obforcefielddialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/submitcalculationdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/submitcalculationdialog.cpp.o -MF CMakeFiles/MongoChem.dir/submitcalculationdialog.cpp.o.d -o CMakeFiles/MongoChem.dir/submitcalculationdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/submitcalculationdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MongoChem.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/cmake -P CMakeFiles/MongoChem.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/cmake -E cmake_link_script CMakeFiles/MongoChem.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MongoChem.a CMakeFiles/MongoChem.dir/MongoChem_autogen/mocs_compilation.cpp.o CMakeFiles/MongoChem.dir/mongochem.cpp.o CMakeFiles/MongoChem.dir/mongochemwidget.cpp.o CMakeFiles/MongoChem.dir/girderrequest.cpp.o CMakeFiles/MongoChem.dir/configdialog.cpp.o CMakeFiles/MongoChem.dir/listmoleculesmodel.cpp.o CMakeFiles/MongoChem.dir/calculationsubmitter.cpp.o CMakeFiles/MongoChem.dir/calculationwatcher.cpp.o CMakeFiles/MongoChem.dir/submitcalculationdialog.cpp.o CMakeFiles/MongoChem.dir/MongoChemPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MongoChem.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Built target MongoChem make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Generating ui_openmminputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/ui_openmminputdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/openmminput/openmminputdialog.h:29:53: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/openmminput/openmminput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obcharges.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obcharges.cpp.o -MF CMakeFiles/OpenBabel.dir/obcharges.cpp.o.d -o CMakeFiles/OpenBabel.dir/obcharges.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.h: In constructor ‘Avogadro::QtPlugins::OBCharges::OBCharges(const std::string&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.h:65:15: warning: ‘Avogadro::QtPlugins::OBCharges::m_identifier’ will be initialized after [-Wreorder] 65 | std::string m_identifier; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.cpp:65:77: warning: base ‘Avogadro::Calc::ChargeModel’ [-Wreorder] 65 | OBCharges::OBCharges(const std::string& id) : m_identifier(id), ChargeModel() | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.cpp:65:1: warning: when initialized here [-Wreorder] 65 | OBCharges::OBCharges(const std::string& id) : m_identifier(id), ChargeModel() | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o -MF CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o.d -o CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h:29:53: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qatomic.h:41, from /usr/include/qt5/QtCore/qvariant.h:43, from /usr/include/qt5/QtCore/QVariant:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/ui_openmminputdialog.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp: In member function ‘QString Avogadro::QtPlugins::OpenMMInputDialog::generateInputDeck()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp:959:44: warning: ‘QTextStream& QTextStreamFunctions::fixed(QTextStream&)’ is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 959 | scriptStream << " nonbondedCutoff=" << fixed << qSetRealNumberPrecision(4) | ^~~~~ In file included from /usr/include/qt5/QtCore/qdebug.h:49, from /usr/include/qt5/QtCore/QDebug:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp:21: /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp:970:49: warning: ‘QTextStream& QTextStreamFunctions::fixed(QTextStream&)’ is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 970 | scriptStream << ", ewaldErrorTolerance=" << fixed | ^~~~~ /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminput.cpp.o -MF CMakeFiles/OpenMMInput.dir/openmminput.cpp.o.d -o CMakeFiles/OpenMMInput.dir/openmminput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminput.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminput.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h:29:53: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminput.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h: In member function ‘void Avogadro::QtPlugins::OpenMMInput::menuActivated()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h:29:53: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obfileformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obfileformat.cpp.o -MF CMakeFiles/OpenBabel.dir/obfileformat.cpp.o.d -o CMakeFiles/OpenBabel.dir/obfileformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obfileformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o -MF CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o.d -o CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OpenMMInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -P CMakeFiles/OpenMMInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OpenMMInput.a CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o CMakeFiles/OpenMMInput.dir/openmminput.cpp.o CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OpenMMInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Built target OpenMMInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Generating qrc_playertool.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/lib64/qt5/bin/rcc --name playertool --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/qrc_playertool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o -MF CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o.d -o CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obforcefielddialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obprocess.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obprocess.cpp.o -MF CMakeFiles/OpenBabel.dir/obprocess.cpp.o.d -o CMakeFiles/OpenBabel.dir/obprocess.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp: In member function ‘void Avogadro::QtPlugins::OBProcess::queryReadFormatsPrepare()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp:154:23: warning: ‘QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]’ is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 154 | result.insertMulti(description, extension); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/QMap:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp:6: /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp: In member function ‘void Avogadro::QtPlugins::OBProcess::queryWriteFormatsPrepare()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp:179:23: warning: ‘QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]’ is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 179 | result.insertMulti(description, extension); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp: In member function ‘void Avogadro::QtPlugins::OBProcess::queryForceFieldsPrepare()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp:279:23: warning: ‘QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]’ is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 279 | result.insertMulti(key, desc); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp: In member function ‘void Avogadro::QtPlugins::OBProcess::queryChargesPrepare()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp:318:23: warning: ‘QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]’ is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 318 | result.insertMulti(key, desc); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/playertool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/playertool.cpp.o -MF CMakeFiles/PlayerTool.dir/playertool.cpp.o.d -o CMakeFiles/PlayerTool.dir/playertool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.cpp: In member function ‘void Avogadro::QtPlugins::PlayerTool::recordMovie()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.cpp:286:45: warning: ‘static QPixmap QPixmap::grabWindow(WId, int, int, int, int)’ is deprecated: Use QScreen::grabWindow() instead [-Wdeprecated-declarations] 286 | QPixmap pixmap = QPixmap::grabWindow(m_glWidget->winId()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtGui/qicon.h:46, from /usr/include/qt5/QtGui/QIcon:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.cpp:16: /usr/include/qt5/QtGui/qpixmap.h:118:20: note: declared here 118 | static QPixmap grabWindow(WId, int x = 0, int y = 0, int w = -1, int h = -1); | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.cpp:330:45: warning: ‘static QPixmap QPixmap::grabWindow(WId, int, int, int, int)’ is deprecated: Use QScreen::grabWindow() instead [-Wdeprecated-declarations] 330 | QPixmap pixmap = QPixmap::grabWindow(m_glWidget->winId()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtGui/qpixmap.h:118:20: note: declared here 118 | static QPixmap grabWindow(WId, int x = 0, int y = 0, int w = -1, int h = -1); | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.cpp:367:45: warning: ‘static QPixmap QPixmap::grabWindow(WId, int, int, int, int)’ is deprecated: Use QScreen::grabWindow() instead [-Wdeprecated-declarations] 367 | QPixmap pixmap = QPixmap::grabWindow(m_glWidget->winId()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtGui/qpixmap.h:118:20: note: declared here 118 | static QPixmap grabWindow(WId, int x = 0, int y = 0, int w = -1, int h = -1); | ^~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o -MF CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o.d -o CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/qrc_playertool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o -MF CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o.d -o CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PlayerTool.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -P CMakeFiles/PlayerTool.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_link_script CMakeFiles/PlayerTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PlayerTool.a CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o CMakeFiles/PlayerTool.dir/playertool.cpp.o CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PlayerTool.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Built target PlayerTool make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables 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-I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/openbabel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/openbabel.cpp.o -MF CMakeFiles/OpenBabel.dir/openbabel.cpp.o.d -o CMakeFiles/OpenBabel.dir/openbabel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp: In member function ‘virtual QList Avogadro::QtPlugins::OpenBabel::fileFormats() const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:127:60: warning: ‘QSet QList::toSet() const [with T = QString]’ is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 127 | formatDescriptions.unite(m_readFormats.uniqueKeys().toSet()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/qt5/QtCore/qobject.h:49, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:6: /usr/include/qt5/QtCore/qlist.h:413:13: note: declared here 413 | QSet toSet() const; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:128:61: warning: ‘QSet QList::toSet() const [with T = QString]’ is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 128 | formatDescriptions.unite(m_writeFormats.uniqueKeys().toSet()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/qt5/QtCore/qdebug.h:52, from /usr/include/qt5/QtCore/QDebug:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:20: /usr/include/qt5/QtCore/qset.h:406:30: note: declared here 406 | Q_OUTOFLINE_TEMPLATE QSet QList::toSet() const | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:151:63: warning: ‘QSet QList::toSet() const [with T = QString]’ is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 151 | formatExtensions.unite(m_readFormats.values(qdesc).toSet()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/qt5/QtCore/qset.h:406:30: note: declared here 406 | Q_OUTOFLINE_TEMPLATE QSet QList::toSet() const | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:155:64: warning: ‘QSet QList::toSet() const [with T = QString]’ is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 155 | formatExtensions.unite(m_writeFormats.values(qdesc).toSet()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/qt5/QtCore/qset.h:406:30: note: declared here 406 | Q_OUTOFLINE_TEMPLATE QSet QList::toSet() const | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp: In member function ‘QString Avogadro::QtPlugins::OpenBabel::autoDetectForceField() const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:822:45: warning: ‘QString::SkipEmptyParts’ is deprecated [-Wdeprecated-declarations] 822 | formula.split(QRegExp("\\d+"), QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobject.h:47: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:822:45: warning: ‘QString::SkipEmptyParts’ is deprecated [-Wdeprecated-declarations] 822 | formula.split(QRegExp("\\d+"), QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:822:18: warning: ‘QStringList QString::split(const QRegExp&, SplitBehavior) const’ is deprecated: Use split(const QRegularExpression &, Qt::SplitBehavior) variant instead [-Wdeprecated-declarations] 822 | formula.split(QRegExp("\\d+"), QString::SkipEmptyParts); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:622:17: note: declared here 622 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o -MF CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o.d -o CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OpenBabel.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -P CMakeFiles/OpenBabel.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenBabel.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OpenBabel.a CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o CMakeFiles/OpenBabel.dir/obcharges.cpp.o CMakeFiles/OpenBabel.dir/obfileformat.cpp.o CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o CMakeFiles/OpenBabel.dir/obprocess.cpp.o CMakeFiles/OpenBabel.dir/openbabel.cpp.o CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OpenBabel.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Built target OpenBabel make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o -MF CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertytables.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertytables.cpp.o -MF CMakeFiles/PropertyTables.dir/propertytables.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertytables.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertytables.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/povray.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/povray.cpp.o -MF CMakeFiles/POVRay.dir/povray.cpp.o.d -o CMakeFiles/POVRay.dir/povray.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray/povray.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray/povray.cpp:11: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o -MF CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o.d -o CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRayPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Linking CXX static library ../../../lib/avogadro2/staticplugins/POVRay.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -P CMakeFiles/POVRay.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_link_script CMakeFiles/POVRay.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/POVRay.a CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o CMakeFiles/POVRay.dir/povray.cpp.o CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/POVRay.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Built target POVRay make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Building CXX object avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertymodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertymodel.cpp.o -MF CMakeFiles/PropertyTables.dir/propertymodel.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertymodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp: In member function ‘virtual QVariant Avogadro::PropertyModel::data(const QModelIndex&, int) const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:186:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Avogadro::Index’ {aka ‘long unsigned int’} [-Wsign-compare] 186 | row < m_molecule->atomCount()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:192:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Avogadro::Index’ {aka ‘long unsigned int’} [-Wsign-compare] 192 | row < m_molecule->residueCount()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:212:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Avogadro::Index’ {aka ‘long unsigned int’} [-Wsign-compare] 212 | if (row >= m_molecule->atomCount() || column > AtomColumns) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:245:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Avogadro::Index’ {aka ‘long unsigned int’} [-Wsign-compare] 245 | if (row >= m_molecule->bondCount() || column > BondColumns) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:270:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Avogadro::Index’ {aka ‘long unsigned int’} [-Wsign-compare] 270 | if (row >= m_molecule->residueCount() || column > ResidueColumns) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:293:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 293 | if (row > m_angles.size() || column > AngleColumns) | ~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:323:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 323 | if (row > m_torsions.size() || column > TorsionColumns) | ~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:200:8: warning: unused variable ‘sortRole’ [-Wunused-variable] 200 | bool sortRole = | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp: In member function ‘bool Avogadro::PropertyModel::fragmentRecurse(const Avogadro::QtGui::RWBond&, const Avogadro::QtGui::RWAtom&, const Avogadro::QtGui::RWAtom&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:625:47: warning: typedef ‘BondIter’ locally defined but not used [-Wunused-local-typedefs] 625 | typedef std::vector::const_iterator BondIter; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o -MF CMakeFiles/PropertyTables.dir/propertyview.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertyview.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.h: In constructor ‘Avogadro::PropertyView::PropertyView(Avogadro::PropertyType, QWidget*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.h:35:20: warning: ‘Avogadro::PropertyView::m_molecule’ will be initialized after [-Wreorder] 35 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.h:34:16: warning: ‘Avogadro::PropertyType Avogadro::PropertyView::m_type’ [-Wreorder] 34 | PropertyType m_type; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.cpp:25:1: warning: when initialized here [-Wreorder] 25 | PropertyView::PropertyView(PropertyType type, QWidget* parent) | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.cpp: In member function ‘virtual void Avogadro::PropertyView::selectionChanged(const QItemSelection&, const QItemSelection&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Avogadro::Index’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | if (rowNum >= m_molecule->atomCount()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.cpp:105:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Avogadro::Index’ {aka ‘long unsigned int’} [-Wsign-compare] 105 | if (rowNum >= m_molecule->bondCount()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o -MF CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o.d -o CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PropertyTables.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -P CMakeFiles/PropertyTables.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_link_script CMakeFiles/PropertyTables.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PropertyTables.a CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o CMakeFiles/PropertyTables.dir/propertytables.cpp.o CMakeFiles/PropertyTables.dir/propertymodel.cpp.o CMakeFiles/PropertyTables.dir/propertyview.cpp.o CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PropertyTables.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Built target PropertyTables make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 74%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/select.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/select.cpp.o -MF CMakeFiles/Select.dir/select.cpp.o.d -o CMakeFiles/Select.dir/select.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.h: In constructor ‘Avogadro::QtPlugins::Select::Select(QObject*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.h:63:29: warning: ‘Avogadro::QtPlugins::Select::m_layerManager’ will be initialized after [-Wreorder] 63 | QtGui::PluginLayerManager m_layerManager; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.h:61:20: warning: ‘Avogadro::QtGui::Molecule* Avogadro::QtPlugins::Select::m_molecule’ [-Wreorder] 61 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:27:1: warning: when initialized here [-Wreorder] 27 | Select::Select(QObject* parent_) | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp: In member function ‘void Avogadro::QtPlugins::Select::selectWater()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:233:19: warning: loop variable ‘residue’ creates a copy from type ‘const Avogadro::Core::Residue’ [-Wrange-loop-construct] 233 | for (const auto residue : m_molecule->residues()) { | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:233:19: note: use reference type to prevent copying 233 | for (const auto residue : m_molecule->residues()) { | ^~~~~~~ | & /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp: In member function ‘void Avogadro::QtPlugins::Select::selectBackboneAtoms()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:249:19: warning: loop variable ‘residue’ creates a copy from type ‘const Avogadro::Core::Residue’ [-Wrange-loop-construct] 249 | for (const auto residue : m_molecule->residues()) { | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:249:19: note: use reference type to prevent copying 249 | for (const auto residue : m_molecule->residues()) { | ^~~~~~~ | & /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp: In member function ‘void Avogadro::QtPlugins::Select::selectSidechainAtoms()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:276:19: warning: loop variable ‘residue’ creates a copy from type ‘const Avogadro::Core::Residue’ [-Wrange-loop-construct] 276 | for (const auto residue : m_molecule->residues()) { | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:276:19: note: use reference type to prevent copying 276 | for (const auto residue : m_molecule->residues()) { | ^~~~~~~ | & /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp: In member function ‘void Avogadro::QtPlugins::Select::selectAtomIndex()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:402:35: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 402 | for (Index i = start; i <= last; ++i) { | ~~^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp: In member function ‘void Avogadro::QtPlugins::Select::selectResidue()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:438:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 438 | if (index >= 1 && index < residueList.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:455:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 455 | if (index >= 1 && index < residueList.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 74%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/SelectPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/SelectPlugin.cpp.o -MF CMakeFiles/Select.dir/SelectPlugin.cpp.o.d -o CMakeFiles/Select.dir/SelectPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/SelectPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 74%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Select.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/cmake -P CMakeFiles/Select.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_link_script CMakeFiles/Select.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Select.a CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o CMakeFiles/Select.dir/select.cpp.o CMakeFiles/Select.dir/SelectPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Select.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 74%] Built target Select make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Automatic MOC for target Selection cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontool.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/selectiontool/selectiontool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Built target Selection_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o -MF CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Building CXX object avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/resetview.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/resetview.cpp.o -MF CMakeFiles/ResetView.dir/resetview.cpp.o.d -o CMakeFiles/ResetView.dir/resetview.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview/resetview.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview/resetview.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Building CXX object avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o -MF CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o.d -o CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ResetView.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/cmake -P CMakeFiles/ResetView.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_link_script CMakeFiles/ResetView.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ResetView.a CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o CMakeFiles/ResetView.dir/resetview.cpp.o CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ResetView.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Built target ResetView make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o -MF CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o.d -o CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup/spacegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Automatic MOC for target Surfaces cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfacedialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfaces.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfacedialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfaces.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/slatersetconcurrent.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/surfacedialog.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/surfaces.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Built target Surfaces_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o -MF CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o.d -o CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Linking CXX static library ../../../lib/avogadro2/staticplugins/SpaceGroup.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -P CMakeFiles/SpaceGroup.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpaceGroup.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/SpaceGroup.a CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/SpaceGroup.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Built target SpaceGroup make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Generating ui_vibrationdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/ui_vibrationdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o -MF CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/spectra/vibrationdialog.h:31:66: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 31 | VibrationDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/spectra/spectra.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationdialog.cpp.o -MF CMakeFiles/Spectra.dir/vibrationdialog.cpp.o.d -o CMakeFiles/Spectra.dir/vibrationdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h:31:66: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 31 | VibrationDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qdialog.h:43, from /usr/include/qt5/QtWidgets/QDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o -MF CMakeFiles/SVG.dir/svg.cpp.o.d -o CMakeFiles/SVG.dir/svg.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.cpp:13: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘Avogadro::QtPlugins::SVG::SVGAtom::SVGAtom(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.h:47:10, inlined from ‘std::__new_allocator::construct(Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from ‘std::vector >::push_back(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from ‘Avogadro::QtPlugins::SVG::getPositions()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.cpp:154:22: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&atom + 24].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.cpp: In member function ‘Avogadro::QtPlugins::SVG::getPositions()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.cpp:152:13: note: ‘atom’ declared here 152 | SVGAtom atom(atomPositions[i].cast(), pos, i, | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationmodel.cpp.o -MF CMakeFiles/Spectra.dir/vibrationmodel.cpp.o.d -o CMakeFiles/Spectra.dir/vibrationmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp: In member function ‘virtual QVariant Avogadro::QtPlugins::VibrationModel::data(const QModelIndex&, int) const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:76:49: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 76 | m_molecule->vibrationFrequencies().size() <= idx.row()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:83:55: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 83 | if (m_molecule->vibrationFrequencies().size() > idx.row()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:88:57: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 88 | if (m_molecule->vibrationIRIntensities().size() > idx.row()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:93:60: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 93 | if (m_molecule->vibrationRamanIntensities().size() > idx.row()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp: In member function ‘virtual QModelIndex Avogadro::QtPlugins::VibrationModel::index(int, int, const QModelIndex&) const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:110:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 110 | row < m_molecule->vibrationFrequencies().size()) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVGPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVGPlugin.cpp.o -MF CMakeFiles/SVG.dir/SVGPlugin.cpp.o.d -o CMakeFiles/SVG.dir/SVGPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVGPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Linking CXX static library ../../../lib/avogadro2/staticplugins/SVG.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/cmake -P CMakeFiles/SVG.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_link_script CMakeFiles/SVG.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/SVG.a CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o CMakeFiles/SVG.dir/svg.cpp.o CMakeFiles/SVG.dir/SVGPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/SVG.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Built target SVG make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o -MF CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o.d -o CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/spectra.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/spectra.cpp.o -MF CMakeFiles/Spectra.dir/spectra.cpp.o.d -o CMakeFiles/Spectra.dir/spectra.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/spectra.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/spectra.cpp:7: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h:31:66: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 31 | VibrationDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/spectra.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/spectra.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h: In member function ‘void Avogadro::QtPlugins::Spectra::openDialog()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h:31:66: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 31 | VibrationDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Spectra.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/cmake -P CMakeFiles/Spectra.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/Spectra.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Spectra.a CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o CMakeFiles/Spectra.dir/vibrationdialog.cpp.o CMakeFiles/Spectra.dir/vibrationmodel.cpp.o CMakeFiles/Spectra.dir/spectra.cpp.o CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Spectra.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Built target Spectra make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Automatic MOC for target apbs cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbs.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/opendxreader.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbs.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/opendxreader.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/apbs/apbsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbs.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbs.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbsdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbsdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbsoutputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/apbs/apbsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Built target apbs_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Automatic MOC for target Cp2kInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinput.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Built target Cp2kInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 78%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Automatic MOC for target GamessInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamesshighlighter.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamessinput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinput.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Built target GamessInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o -MF CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/vrml.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/vrml.cpp.o -MF CMakeFiles/VRML.dir/vrml.cpp.o.d -o CMakeFiles/VRML.dir/vrml.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml/vrml.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml/vrml.cpp:10: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRMLPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRMLPlugin.cpp.o -MF CMakeFiles/VRML.dir/VRMLPlugin.cpp.o.d -o CMakeFiles/VRML.dir/VRMLPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VRML.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/cmake -P CMakeFiles/VRML.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_link_script CMakeFiles/VRML.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VRML.a CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o CMakeFiles/VRML.dir/vrml.cpp.o CMakeFiles/VRML.dir/VRMLPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VRML.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Built target VRML make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Automatic MOC for target QuantumInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/quantuminput/quantuminput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/quantuminput/quantuminput.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/quantuminput/quantuminput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Built target QuantumInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/command.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/command.cpp.o -MF CMakeFiles/commands.dir/command.cpp.o.d -o CMakeFiles/commands.dir/command.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.cpp In file included from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.cpp: In member function ‘void Avogadro::QtPlugins::Command::updateActions()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.cpp:286:67: warning: ‘QList QMap::uniqueKeys() const [with Key = QString; T = QString]’ is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 286 | foreach (const QString& programName, m_commandScripts.uniqueKeys()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/qt5/QtCore/QMap:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.h:11: /usr/include/qt5/QtCore/qmap.h:1354:12: note: declared here 1354 | QList QMap::uniqueKeys() const | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.cpp:287:50: warning: ‘QList QMap::values(const Key&) const [with Key = QString; T = QString]’ is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 287 | QStringList scripts = m_commandScripts.values(programName); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1360:10: note: declared here 1360 | QList QMap::values(const Key &key) const | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commandsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commandsPlugin.cpp.o -MF CMakeFiles/commands.dir/commandsPlugin.cpp.o.d -o CMakeFiles/commands.dir/commandsPlugin.cpp.o -c 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'/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Built target commands make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make 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-I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp: In member function ‘void Avogadro::QtPlugins::FileFormatScript::readMetaData()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp:219:52: warning: typedef ‘StringVectorIter’ locally defined but not used [-Wunused-local-typedefs] 219 | typedef std::vector::const_iterator StringVectorIter; | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -P CMakeFiles/ScriptFileFormats.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScriptFileFormats.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Built target ScriptFileFormats make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Generating ui_downloaderwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/ui_downloaderwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/downloaderwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 82%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o -MF CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o.d -o CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h: In constructor ‘Avogadro::QtPlugins::ScriptChargeModel::ScriptChargeModel(const QString&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:86:8: warning: ‘Avogadro::QtPlugins::ScriptChargeModel::m_electrostatics’ will be initialized after [-Wreorder] 86 | bool m_electrostatics; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:82:10: warning: ‘Avogadro::QtPlugins::ScriptChargeModel::Format Avogadro::QtPlugins::ScriptChargeModel::m_inputFormat’ [-Wreorder] 82 | Format m_inputFormat; | ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:28:1: warning: when initialized here [-Wreorder] 28 | ScriptChargeModel::ScriptChargeModel(const QString& scriptFileName_) | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp: In member function ‘virtual Avogadro::MatrixX Avogadro::QtPlugins::ScriptChargeModel::partialCharges(Avogadro::Core::Molecule&) const’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:95:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 95 | for (unsigned int i = 0; i < lines.size(); ++i) { | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp: In member function ‘void Avogadro::QtPlugins::ScriptChargeModel::processElementString(const QString&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:360:62: warning: ‘QString::SkipEmptyParts’ is deprecated [-Wdeprecated-declarations] 360 | QStringList strList = str2.split(QRegExp("\\s+"), QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/QString:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:13: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:360:62: warning: ‘QString::SkipEmptyParts’ is deprecated [-Wdeprecated-declarations] 360 | QStringList strList = str2.split(QRegExp("\\s+"), QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:360:35: warning: ‘QStringList QString::split(const QRegExp&, SplitBehavior) const’ is deprecated: Use split(const QRegularExpression &, Qt::SplitBehavior) variant instead [-Wdeprecated-declarations] 360 | QStringList strList = str2.split(QRegExp("\\s+"), QString::SkipEmptyParts); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:622:17: note: declared here 622 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 82%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o -MF CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o.d -o CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/plugindownloader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o -MF CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o.d -o CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptcharges.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o -MF CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o.d -o CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ScriptCharges.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -P CMakeFiles/ScriptCharges.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScriptCharges.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ScriptCharges.a CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ScriptCharges.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target ScriptCharges make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o -MF CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o -MF CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o.d -o CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/downloaderwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o -MF CMakeFiles/BallStick.dir/ballandstick.cpp.o.d -o CMakeFiles/BallStick.dir/ballandstick.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick/ballandstick.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick/ballandstick.cpp:12: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o -MF CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o.d -o CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp: In member function ‘QList Avogadro::QtPlugins::ZipExtracter::extract(std::string, std::string)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp:110:8: warning: unused variable ‘itrCount’ [-Wunused-variable] 110 | long itrCount = 0; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -MF CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o.d -o CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/BallStick.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -P CMakeFiles/BallStick.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_link_script CMakeFiles/BallStick.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/BallStick.a CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o CMakeFiles/BallStick.dir/ballandstick.cpp.o CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/BallStick.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target BallStick make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o -MF CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o.d -o CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PluginDownloader.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -P CMakeFiles/PluginDownloader.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_link_script CMakeFiles/PluginDownloader.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PluginDownloader.a CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PluginDownloader.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target PluginDownloader make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/force.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/force.cpp.o -MF CMakeFiles/Force.dir/force.cpp.o.d -o CMakeFiles/Force.dir/force.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force/force.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force/force.cpp:12: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/closecontacts.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/closecontacts.cpp.o -MF CMakeFiles/CloseContacts.dir/closecontacts.cpp.o.d -o CMakeFiles/CloseContacts.dir/closecontacts.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts/closecontacts.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts/closecontacts.cpp:17: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/ForcePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/ForcePlugin.cpp.o -MF CMakeFiles/Force.dir/ForcePlugin.cpp.o.d -o CMakeFiles/Force.dir/ForcePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/ForcePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Force.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/cmake -P CMakeFiles/Force.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_link_script CMakeFiles/Force.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Force.a CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o CMakeFiles/Force.dir/force.cpp.o CMakeFiles/Force.dir/ForcePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Force.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target Force make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o -MF CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o.d -o CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CloseContacts.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -P CMakeFiles/CloseContacts.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_link_script CMakeFiles/CloseContacts.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CloseContacts.a CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o CMakeFiles/CloseContacts.dir/closecontacts.cpp.o CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CloseContacts.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target CloseContacts make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice.cpp.o -MF CMakeFiles/Licorice.dir/licorice.cpp.o.d -o CMakeFiles/Licorice.dir/licorice.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice/licorice.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice/licorice.cpp:12: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -MF CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o.d -o CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Licorice.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -P CMakeFiles/Licorice.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_link_script CMakeFiles/Licorice.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Licorice.a CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o CMakeFiles/Licorice.dir/licorice.cpp.o CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Licorice.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target Licorice make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o -MF CMakeFiles/Meshes.dir/meshes.cpp.o.d -o CMakeFiles/Meshes.dir/meshes.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.cpp:13: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::Meshes::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.cpp:86:51: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.373131].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.cpp: In member function ‘Avogadro::QtPlugins::Meshes::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.cpp:86:51: note: ‘’ declared here 86 | Core::Array colorsRGB(colors.size()); | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -MF CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o.d -o CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Meshes.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -P CMakeFiles/Meshes.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_link_script CMakeFiles/Meshes.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Meshes.a CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o CMakeFiles/Meshes.dir/meshes.cpp.o CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Meshes.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Built target Meshes make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/noncovalent.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/noncovalent.cpp.o -MF CMakeFiles/NonCovalent.dir/noncovalent.cpp.o.d -o CMakeFiles/NonCovalent.dir/noncovalent.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent/noncovalent.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent/noncovalent.cpp:17: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o -MF CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o.d -o CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals/vanderwaals.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals/vanderwaals.cpp:11: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o -MF CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o.d -o CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NonCovalent.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -P CMakeFiles/NonCovalent.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_link_script CMakeFiles/NonCovalent.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NonCovalent.a CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o CMakeFiles/NonCovalent.dir/noncovalent.cpp.o CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NonCovalent.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Built target NonCovalent make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o -MF CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o.d -o CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VanDerWaals.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -P CMakeFiles/VanDerWaals.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_link_script CMakeFiles/VanDerWaals.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VanDerWaals.a CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VanDerWaals.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Built target VanDerWaals make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAO_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAO_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAO_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAO_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/vanderwaalsao.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/vanderwaalsao.cpp.o -MF CMakeFiles/VanDerWaalsAO.dir/vanderwaalsao.cpp.o.d -o CMakeFiles/VanDerWaalsAO.dir/vanderwaalsao.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.cpp:12: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAOPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAOPlugin.cpp.o -MF CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAOPlugin.cpp.o.d -o CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAOPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAOPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 86%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VanDerWaalsAO.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/cmake -P CMakeFiles/VanDerWaalsAO.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/cmake -E cmake_link_script CMakeFiles/VanDerWaalsAO.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VanDerWaalsAO.a CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAO_autogen/mocs_compilation.cpp.o CMakeFiles/VanDerWaalsAO.dir/vanderwaalsao.cpp.o CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAOPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VanDerWaalsAO.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 86%] Built target VanDerWaalsAO make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/wireframe.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/wireframe.cpp.o -MF CMakeFiles/Wireframe.dir/wireframe.cpp.o.d -o CMakeFiles/Wireframe.dir/wireframe.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe/wireframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe/wireframe.cpp:11: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 87%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o -MF CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o.d -o CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Wireframe.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -P CMakeFiles/Wireframe.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_link_script CMakeFiles/Wireframe.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Wireframe.a CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o CMakeFiles/Wireframe.dir/wireframe.cpp.o CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Wireframe.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Built target Wireframe make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 87%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/overlayaxes/overlayaxes.h:13, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/mocs_compilation.cpp:2: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimextension.cpp: In member function ‘void Avogadro::QtPlugins::QTAIMExtension::triggered()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimextension.cpp:102:14: warning: ‘void QTime::start()’ is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 102 | timer.start(); | ~~~~~~~~~~~^~ In file included from /usr/include/qt5/QtCore/QTime:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimextension.cpp:27: /usr/include/qt5/QtCore/qdatetime.h:235:55: note: declared here 235 | QT_DEPRECATED_X("Use QElapsedTimer instead") void start(); | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o -MF CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o.d -o CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:13, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h: In constructor ‘Avogadro::QtPlugins::OverlayAxes::OverlayAxes(QObject*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:62:12: warning: ‘Avogadro::QtPlugins::OverlayAxes::m_axesAction’ will be initialized after [-Wreorder] 62 | QAction* m_axesAction; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:54:8: warning: ‘bool Avogadro::QtPlugins::OverlayAxes::m_initialized’ [-Wreorder] 54 | bool m_initialized; | ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:234:1: warning: when initialized here [-Wreorder] 234 | OverlayAxes::OverlayAxes(QObject* parent_) | ^~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:15, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:10: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:145:39: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.448547].m_storage’ is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp: In member function ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:145:39: note: ‘’ declared here 145 | Array vertices(numVertices); | ^ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/13/bits/stlmake[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' _construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:146:38: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.448549].m_storage’ is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp: In member function ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:146:38: note: ‘’ declared here 146 | Array normals(numVertices); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp: In member function ‘bool Avogadro::QtPlugins::QTAIMWavefunction::initializeWithWFNFile(const QString&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:137:52: warning: ‘QString::SkipEmptyParts’ is deprecated [-Wdeprecated-declarations] 137 | QStringList splitLine(line.split(" ", QString::SkipEmptyParts)); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qhashfunctions.h:44, from /usr/include/qt5/QtCore/qlist.h:47, from /usr/include/qt5/QtCore/qhash.h:46, from /usr/include/qt5/QtCore/qdebug.h:45, from /usr/include/qt5/QtCore/QDebug:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:17: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:137:52: warning: ‘QString::SkipEmptyParts’ is deprecated [-Wdeprecated-declarations] 137 | QStringList splitLine(line.split(" ", QString::SkipEmptyParts)); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:137:37: warning: ‘QStringList QString::split(const QString&, SplitBehavior, Qt::CaseSensitivity) const’ is deprecated: Use split(const QString &sep, Qt::SplitBehavior ...) variant instead [-Wdeprecated-declarations] 137 | QStringList splitLine(line.split(" ", QString::SkipEmptyParts)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:609:17: note: declared here 609 | QStringList split(const QString &sep, SplitBehavior behavior, | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:264:52: warning: ‘QString::SkipEmptyParts’ is deprecated [-Wdeprecated-declarations] 264 | QStringList splitLine(line.split(" ", QString::SkipEmptyParts)); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:264:52: warning: ‘QString::SkipEmptyParts’ is deprecated [-Wdeprecated-declarations] 264 | QStringList splitLine(line.split(" ", QString::SkipEmptyParts)); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:264:37: warning: ‘QStringList QString::split(const QString&, SplitBehavior, Qt::CaseSensitivity) const’ is deprecated: Use split(const QString &sep, Qt::SplitBehavior ...) variant instead [-Wdeprecated-declarations] 264 | QStringList splitLine(line.split(" ", QString::SkipEmptyParts)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:609:17: note: declared here 609 | QStringList split(const QString &sep, SplitBehavior behavior, | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:327:60: warning: ‘QString::SkipEmptyParts’ is deprecated [-Wdeprecated-declarations] 327 | moCoefficientsStringList.join(" ").split(" ", QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:327:60: warning: ‘QString::SkipEmptyParts’ is deprecated [-Wdeprecated-declarations] 327 | moCoefficientsStringList.join(" ").split(" ", QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:327:45: warning: ‘QStringList QString::split(const QString&, SplitBehavior, Qt::CaseSensitivity) const’ is deprecated: Use split(const QString &sep, Qt::SplitBehavior ...) variant instead [-Wdeprecated-declarations] 327 | moCoefficientsStringList.join(" ").split(" ", QString::SkipEmptyParts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:609:17: note: declared here 609 | QStringList split(const QString &sep, SplitBehavior behavior, | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o -MF CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o.d -o CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:13, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OverlayAxes.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -P CMakeFiles/OverlayAxes.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_link_script CMakeFiles/OverlayAxes.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OverlayAxes.a CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OverlayAxes.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Built target OverlayAxes make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Generating qrc_bondcentrictool.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/lib64/qt5/bin/rcc --name bondcentrictool --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/qrc_bondcentrictool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o -MF CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp: In member function ‘Avogadro::QtPlugins::QTAIMODEIntegrator::r8_f(double, double*, double*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:262:36: warning: ‘MEM[(double &)&gradient]’ may be used uninitialized [-Wmaybe-uninitialized] 262 | sqrt(gradient(0) * gradient(0) + gradient(1) * gradient(1) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:196:23: note: ‘MEM[(double &)&gradient]’ was declared here 196 | Matrix gradient; | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:196:23: warning: ‘MEM[(double &)&gradient + 8]’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:262:9: warning: ‘MEM[(double &)&gradient + 16]’ may be used uninitialized [-Wmaybe-uninitialized] 262 | sqrt(gradient(0) * gradient(0) + gradient(1) * gradient(1) + | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 | gradient(2) * gradient(2)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:196:23: note: ‘MEM[(double &)&gradient + 16]’ was declared here 196 | Matrix gradient; | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp: In member function ‘Avogadro::QtPlugins::QTAIMODEIntegrator::integrate(QVector3D)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:151:40: warning: ‘abserr’ may be used uninitialized [-Wmaybe-uninitialized] 151 | flag = QTAIMODEIntegrator::r8_rkf45(NEQN, y, yp, &t, t_out, &relerr, abserr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | flag); | ~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:53:9: note: ‘abserr’ was declared here 53 | qreal abserr; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:56:10: warning: ‘n_step’ may be used uninitialized [-Wmaybe-uninitialized] 56 | qint64 n_step; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:145:69: warning: ‘t_stop’ may be used uninitialized [-Wmaybe-uninitialized] 145 | ((qreal)(n_step - i_step + 1) * t_start + (qreal)(i_step - 1) * t_stop) / | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:61:9: note: ‘t_stop’ was declared here 61 | qreal t_stop; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o -MF CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o.d -o CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:16: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp: In member function ‘bool Avogadro::QtPlugins::BondCentricTool::buildFragmentRecurse(const Avogadro::QtGui::RWBond&, const Avogadro::QtGui::RWAtom&, const Avogadro::QtGui::RWAtom&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:1190:47: warning: typedef ‘BondIter’ locally defined but not used [-Wunused-local-typedefs] 1190 | typedef std::vector::const_iterator BondIter; | ^~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:14: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::(anonymous namespace)::Quad::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:128:26: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.454113].m_storage’ is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp: In member function ‘Avogadro::QtPlugins::(anonymous namespace)::Quad::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:128:26: note: ‘’ declared here 128 | Array verts(4); | ^ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::(anonymous namespace)::QuadOutline::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float) [clone .constprop.0]’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:232:26: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.839515].m_storage’ is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp: In member function ‘Avogadro::QtPlugins::(anonymous namespace)::QuadOutline::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float) [clone .constprop.0]’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:232:26: note: ‘’ declared here 232 | Array verts(5); | ^ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::(anonymous namespace)::ArcStrip::setArc(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float, float) [clone .constprop.0]’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:281:33: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.854849].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp: In member function ‘Avogadro::QtPlugins::(anonymous namespace)::ArcStrip::setArc(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float, float) [clone .constprop.0]’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:281:33: note: ‘’ declared here 281 | Array verts(numVerts); | ^ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::(anonymous namespace)::ArcSector::setArcSector(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float) [clone .constprop.0]’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:189:33: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.855728].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp: In member function ‘Avogadro::QtPlugins::(anonymous namespace)::ArcSector::setArcSector(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float) [clone .constprop.0]’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:189:33: note: ‘’ declared here 189 | Array verts(numVerts); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o -MF CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o.d -o CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/qrc_bondcentrictool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o -MF CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o.d -o CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Linking CXX static library ../../../lib/avogadro2/staticplugins/BondCentric.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -P CMakeFiles/BondCentric.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_link_script CMakeFiles/BondCentric.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/BondCentric.a CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/BondCentric.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Built target BondCentric make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Generating qrc_manipulator.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/lib64/qt5/bin/rcc --name manipulator --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/qrc_manipulator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimmathutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/manipulator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/manipulator.cpp.o -MF CMakeFiles/Manipulator.dir/manipulator.cpp.o.d -o CMakeFiles/Manipulator.dir/manipulator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.cpp:13: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.cpp: In member function ‘void Avogadro::QtPlugins::Manipulator::updatePressedButtons(QMouseEvent*, bool)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.cpp:237:33: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 237 | } else if (e->buttons() & Qt::MidButton || | ^~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.cpp:6: /usr/include/qt5/QtCore/qnamespace.h:138:9: note: declared here 138 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o -MF CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o.d -o CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/qrc_manipulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o -MF CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o.d -o CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Manipulator.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -P CMakeFiles/Manipulator.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_link_script CMakeFiles/Manipulator.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Manipulator.a CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o CMakeFiles/Manipulator.dir/manipulator.cpp.o CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Manipulator.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Built target Manipulator make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Generating qrc_measuretool.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/lib64/qt5/bin/rcc --name measuretool --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/qrc_measuretool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp: In member function ‘Avogadro::QtPlugins::QTAIMLSODAIntegrator::f(int, double, double*, double*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp:237:36: warning: ‘MEM[(double &)&gradient]’ may be used uninitialized [-Wmaybe-uninitialized] 237 | sqrt(gradient(0) * gradient(0) + gradient(1) * gradient(1) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp:171:23: note: ‘MEM[(double &)&gradient]’ was declared here 171 | Matrix gradient; | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp:171:23: warning: ‘MEM[(double &)&gradient + 8]’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp:237:9: warning: ‘MEM[(double &)&gradient + 16]’ may be used uninitialized [-Wmaybe-uninitialized] 237 | sqrt(gradient(0) * gradient(0) + gradient(1) * gradient(1) + | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 | gradient(2) * gradient(2)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp:171:23: note: ‘MEM[(double &)&gradient + 16]’ was declared here 171 | Matrix gradient; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o -MF CMakeFiles/MeasureTool.dir/measuretool.cpp.o.d -o CMakeFiles/MeasureTool.dir/measuretool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.cpp:13: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.cpp:11: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘QVector >::QVector(int, Eigen::Matrix const&)’ at /usr/include/qt5/QtCore/qvector.h:528:13, inlined from ‘Avogadro::QtPlugins::MeasureTool::draw(Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.cpp:157:55: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.456140].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.cpp: In member function ‘Avogadro::QtPlugins::MeasureTool::draw(Avogadro::Rendering::GroupNode&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.cpp:157:54: note: ‘’ declared here 157 | QVector positions(m_atoms.size(), Vector3()); | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp: In function ‘QList QTAIMEvaluateProperty(QList)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp:1249:42: warning: ‘QSet QList::toSet() const [with T = long long int]’ is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 1249 | QSet basinSet = basinList.toSet(); | ~~~~~~~~~~~~~~~^~ In file included from /usr/include/qt5/QtCore/qdebug.h:52, from /usr/include/qt5/QtCore/QDebug:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp:53: /usr/include/qt5/QtCore/qset.h:406:30: note: declared here 406 | Q_OUTOFLINE_TEMPLATE QSet QList::toSet() const | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp: In function ‘QList QTAIMEvaluatePropertyRTP(QList)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp:1509:42: warning: ‘QSet QList::toSet() const [with T = long long int]’ is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 1509 | QSet basinSet = basinList.toSet(); | ~~~~~~~~~~~~~~~^~ /usr/include/qt5/QtCore/qset.h:406:30: note: declared here 406 | Q_OUTOFLINE_TEMPLATE QSet QList::toSet() const | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp: In function ‘QList QTAIMEvaluatePropertyTP(QList)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp:1853:42: warning: ‘QSet QList::toSet() const [with T = long long int]’ is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 1853 | QSet basinSet = basinList.toSet(); | ~~~~~~~~~~~~~~~^~ /usr/include/qt5/QtCore/qset.h:406:30: note: declared here 406 | Q_OUTOFLINE_TEMPLATE QSet QList::toSet() const | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o -MF CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o.d -o CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/qrc_measuretool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o -MF CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QTAIMExtension.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -P CMakeFiles/QTAIMExtension.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/QTAIMExtension.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QTAIMExtension.a CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QTAIMExtension.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Built target QTAIMExtension make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Generating qrc_navigator.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/lib64/qt5/bin/rcc --name navigator --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/qrc_navigator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o -MF CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o.d -o CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MeasureTool.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -P CMakeFiles/MeasureTool.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_link_script CMakeFiles/MeasureTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MeasureTool.a CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o CMakeFiles/MeasureTool.dir/measuretool.cpp.o CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MeasureTool.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Built target MeasureTool make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Generating ui_selectiontoolwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/ui_selectiontoolwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.ui /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.ui: Warning: The name 'label' (QLabel) is already in use, defaulting to 'label1'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Generating qrc_selectiontool.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/lib64/qt5/bin/rcc --name selectiontool --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 94%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 94%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/navigator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/navigator.cpp.o -MF CMakeFiles/Navigator.dir/navigator.cpp.o.d -o CMakeFiles/Navigator.dir/navigator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.cpp:10: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.cpp: In member function ‘virtual QUndoCommand* Avogadro::QtPlugins::Navigator::mousePressEvent(QMouseEvent*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.cpp:89:33: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 89 | } else if (e->buttons() & Qt::MidButton || | ^~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.cpp:6: /usr/include/qt5/QtCore/qnamespace.h:138:9: note: declared here 138 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 94%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/qrc_navigator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/qrc_navigator.cpp.o -MF CMakeFiles/Navigator.dir/qrc_navigator.cpp.o.d -o CMakeFiles/Navigator.dir/qrc_navigator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/qrc_navigator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 94%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o -MF CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o.d -o CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Navigator.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -P CMakeFiles/Navigator.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_link_script CMakeFiles/Navigator.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Navigator.a CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o CMakeFiles/Navigator.dir/navigator.cpp.o CMakeFiles/Navigator.dir/qrc_navigator.cpp.o CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Navigator.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Built target Navigator make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Generating ui_surfacedialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/ui_surfacedialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 94%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o -MF CMakeFiles/Selection.dir/selectiontool.cpp.o.d -o CMakeFiles/Selection.dir/selectiontool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:10: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.h: In constructor ‘Avogadro::QtPlugins::SelectionTool::SelectionTool(QObject*)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.h:67:48: warning: ‘Avogadro::QtPlugins::SelectionTool::m_doubleClick’ will be initialized after [-Wreorder] 67 | bool m_drawSelectionBox, m_initSelectionBox, m_doubleClick; | ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.h:67:28: warning: ‘bool Avogadro::QtPlugins::SelectionTool::m_initSelectionBox’ [-Wreorder] 67 | bool m_drawSelectionBox, m_initSelectionBox, m_doubleClick; | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:44:1: warning: when initialized here [-Wreorder] 44 | SelectionTool::SelectionTool(QObject* parent_) | ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp: In member function ‘void Avogadro::QtPlugins::SelectionTool::applyLayer(int)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:257:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 257 | if (layer >= m_layerManager.layerCount()) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.h:13: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::SelectionTool::draw(Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:201:26: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.463759].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp: In member function ‘Avogadro::QtPlugins::SelectionTool::draw(Avogadro::Rendering::GroupNode&)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:201:26: note: ‘’ declared here 201 | Array verts(4); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp:4: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/surfaces/surfacedialog.h:34:64: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 34 | SurfaceDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qfuture.h:43, from /usr/include/qt5/QtCore/QFuture:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/surfaces/gaussiansetconcurrent.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o -MF CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o.d -o CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o -MF CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o.d -o CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o -MF CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o.d -o CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/gaussiansetconcurrent.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/SelectionPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/SelectionPlugin.cpp.o -MF CMakeFiles/Selection.dir/SelectionPlugin.cpp.o.d -o CMakeFiles/Selection.dir/SelectionPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Selection.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -P CMakeFiles/Selection.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Selection.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Selection.a CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o CMakeFiles/Selection.dir/selectiontool.cpp.o CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o CMakeFiles/Selection.dir/SelectionPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Selection.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Built target Selection make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Generating ui_apbsoutputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/ui_apbsoutputdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbsoutputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Generating ui_apbsdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/ui_apbsdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbsdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o -MF CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o -MF CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o.d -o CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/slatersetconcurrent.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs.cpp.o -MF CMakeFiles/apbs.dir/apbs.cpp.o.d -o CMakeFiles/apbs.dir/apbs.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbs.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfacedialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfacedialog.cpp.o -MF CMakeFiles/Surfaces.dir/surfacedialog.cpp.o.d -o CMakeFiles/Surfaces.dir/surfacedialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h:34:64: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 34 | SurfaceDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qalgorithms.h:43, from /usr/include/qt5/QtCore/qlist.h:43, from /usr/include/qt5/QtCore/qstringlist.h:41, from /usr/include/qt5/QtCore/QStringList:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsdialog.cpp.o -MF CMakeFiles/apbs.dir/apbsdialog.cpp.o.d -o CMakeFiles/apbs.dir/apbsdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbsdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o -MF CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o.d -o CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbsoutputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o -MF CMakeFiles/Surfaces.dir/surfaces.cpp.o.d -o CMakeFiles/Surfaces.dir/surfaces.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:7: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h:34:64: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 34 | SurfaceDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:34: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h: In member function ‘void Avogadro::QtPlugins::Surfaces::surfacesActivated()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h:34:64: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 34 | SurfaceDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp: In lambda function: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:226:12: warning: enumeration value ‘ElectrostaticPotential’ not handled in switch [-Wswitch] 226 | switch (m_dialog->surfaceType()) { | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:226:12: warning: enumeration value ‘ElectronDensity’ not handled in switch [-Wswitch] /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:226:12: warning: enumeration value ‘MolecularOrbital’ not handled in switch [-Wswitch] /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:226:12: warning: enumeration value ‘SpinDensity’ not handled in switch [-Wswitch] /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:226:12: warning: enumeration value ‘FromFile’ not handled in switch [-Wswitch] /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:226:12: warning: enumeration value ‘Unknown’ not handled in switch [-Wswitch] /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:255:17: warning: unused variable ‘mdist’ [-Wunused-variable] 255 | const float mdist = probeRadius; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp: In member function ‘void Avogadro::QtPlugins::Surfaces::colorMeshByPotential()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:597:10: warning: unused variable ‘maxPotential’ [-Wunused-variable] 597 | double maxPotential = *std::max_element(potentials.begin(), potentials.end()); | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp: In member function ‘void Avogadro::QtPlugins::Surfaces::movieFrame()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:710:41: warning: ‘static QPixmap QPixmap::grabWindow(WId, int, int, int, int)’ is deprecated: Use QScreen::grabWindow() instead [-Wdeprecated-declarations] 710 | QPixmap pixmap = QPixmap::grabWindow(glWidget->winId()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtGui/qbrush.h:52, from /usr/include/qt5/QtGui/qpalette.h:46, from /usr/include/qt5/QtWidgets/qwidget.h:48, from /usr/include/qt5/QtWidgets/qdialog.h:44, from /usr/include/qt5/QtWidgets/QDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h:10: /usr/include/qt5/QtGui/qpixmap.h:118:20: note: declared here 118 | static QPixmap grabWindow(WId, int x = 0, int y = 0, int w = -1, int h = -1); | ^~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:21: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::Surfaces::colorMeshByPotential()’ at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:590:51: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.489495].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp: In member function ‘Avogadro::QtPlugins::Surfaces::colorMeshByPotential()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:590:51: note: ‘’ declared here 590 | Core::Array positions(positionsf.size()); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/opendxreader.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/opendxreader.cpp.o -MF CMakeFiles/apbs.dir/opendxreader.cpp.o.d -o CMakeFiles/apbs.dir/opendxreader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/opendxreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o -MF CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o.d -o CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Surfaces.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -P CMakeFiles/Surfaces.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/Surfaces.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Surfaces.a CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o CMakeFiles/Surfaces.dir/surfacedialog.cpp.o CMakeFiles/Surfaces.dir/surfaces.cpp.o CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Surfaces.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Built target Surfaces make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Generating ui_cp2kinputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/ui_cp2kinputdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsPlugin.cpp.o -MF CMakeFiles/apbs.dir/apbsPlugin.cpp.o.d -o CMakeFiles/apbs.dir/apbsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Linking CXX static library ../../../lib/avogadro2/staticplugins/apbs.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -P CMakeFiles/apbs.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/apbs.a CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o CMakeFiles/apbs.dir/apbs.cpp.o CMakeFiles/apbs.dir/apbsdialog.cpp.o CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o CMakeFiles/apbs.dir/opendxreader.cpp.o CMakeFiles/apbs.dir/apbsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/apbs.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Built target apbs make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Generating ui_gamessinputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/ui_gamessinputdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/cp2kinput/cp2kinputdialog.h:35:76: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit Cp2kInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/cp2kinput/cp2kinput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp:4: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/gamessinput/gamessinputdialog.h:35:78: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit GamessInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtGui/qsyntaxhighlighter.h:43, from /usr/include/qt5/QtGui/QSyntaxHighlighter:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/gamessinput/gamesshighlighter.h:20, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o -MF CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o.d -o CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h:35:78: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit GamessInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qbuttongroup.h:43, from /usr/include/qt5/QtWidgets/QButtonGroup:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o -MF CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o.d -o CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h:35:76: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit Cp2kInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qbuttongroup.h:43, from /usr/include/qt5/QtWidgets/QButtonGroup:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o -MF CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o.d -o CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamesshighlighter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o -MF CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o.d -o CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinput.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinput.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h:35:76: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit Cp2kInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinput.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h: In member function ‘void Avogadro::QtPlugins::Cp2kInput::menuActivated()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h:35:76: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit Cp2kInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinput.cpp.o -MF CMakeFiles/GamessInput.dir/gamessinput.cpp.o.d -o CMakeFiles/GamessInput.dir/gamessinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinput.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinput.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h:35:78: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit GamessInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinput.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h: In member function ‘void Avogadro::QtPlugins::GamessInput::menuActivated()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h:35:78: warning: ‘constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit GamessInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o -MF CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o.d -o CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Cp2kInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -P CMakeFiles/Cp2kInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cp2kInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Cp2kInput.a CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Cp2kInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Built target Cp2kInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 98%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o -MF CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o.d -o CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/GamessInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -P CMakeFiles/GamessInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/GamessInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/GamessInput.a CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o CMakeFiles/GamessInput.dir/gamessinput.cpp.o CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/GamessInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Built target GamessInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o -MF CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o.d -o CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/quantuminput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/quantuminput.cpp.o -MF CMakeFiles/QuantumInput.dir/quantuminput.cpp.o.d -o CMakeFiles/QuantumInput.dir/quantuminput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.cpp In file included from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.cpp: In member function ‘void Avogadro::QtPlugins::QuantumInput::updateActions()’: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.cpp:211:74: warning: ‘QList QMap::uniqueKeys() const [with Key = QString; T = QString]’ is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 211 | foreach (const QString& programName, m_inputGeneratorScripts.uniqueKeys()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/qt5/QtCore/QMap:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.h:11: /usr/include/qt5/QtCore/qmap.h:1354:12: note: declared here 1354 | QList QMap::uniqueKeys() const | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.cpp:212:57: warning: ‘QList QMap::values(const Key&) const [with Key = QString; T = QString]’ is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 212 | QStringList scripts = m_inputGeneratorScripts.values(programName); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1360:10: note: declared here 1360 | QList QMap::values(const Key &key) const | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QuantumInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -P CMakeFiles/QuantumInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/QuantumInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QuantumInput.a CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o CMakeFiles/QuantumInput.dir/quantuminput.cpp.o CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QuantumInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Built target QuantumInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Automatic MOC for target AvogadroQtPlugins cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DAvogadroQtPlugins_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginfactory.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/avogadrostaticqtplugins.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginmanager.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginmanager.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/pluginmanager.h" /usr/lib64/qt5/bin/moc -DAvogadroQtPlugins_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/s390x-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/s390x-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginmanager.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Built target AvogadroQtPlugins_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [100%] Building CXX object avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/AvogadroQtPlugins_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins && /usr/bin/g++ -DAvogadroQtPlugins_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/AvogadroQtPlugins_autogen/mocs_compilation.cpp.o -MF CMakeFiles/AvogadroQtPlugins.dir/AvogadroQtPlugins_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/AvogadroQtPlugins.dir/AvogadroQtPlugins_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [100%] Building CXX object avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/pluginmanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins && /usr/bin/g++ -DAvogadroQtPlugins_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/pluginmanager.cpp.o -MF CMakeFiles/AvogadroQtPlugins.dir/pluginmanager.cpp.o.d -o CMakeFiles/AvogadroQtPlugins.dir/pluginmanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [100%] Linking CXX shared library ../../lib/libAvogadroQtPlugins.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroQtPlugins.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtPlugins.so.1 -o ../../lib/libAvogadroQtPlugins.so.1.97.0 CMakeFiles/AvogadroQtPlugins.dir/AvogadroQtPlugins_autogen/mocs_compilation.cpp.o CMakeFiles/AvogadroQtPlugins.dir/pluginmanager.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/avogadro2/staticplugins/ThreeDMol.a ../../lib/avogadro2/staticplugins/ApplyColors.a ../../lib/avogadro2/staticplugins/BondCentric.a ../../lib/avogadro2/staticplugins/Bonding.a ../../lib/avogadro2/staticplugins/Cartoons.a ../../lib/avogadro2/staticplugins/CoordinateEditor.a ../../lib/avogadro2/staticplugins/CopyPaste.a ../../lib/avogadro2/staticplugins/Crystal.a ../../lib/avogadro2/staticplugins/CrystalScene.a ../../lib/avogadro2/staticplugins/CustomElements.a ../../lib/avogadro2/staticplugins/Editor.a ../../lib/avogadro2/staticplugins/FetchPDB.a ../../lib/avogadro2/staticplugins/Focus.a ../../lib/avogadro2/staticplugins/Hydrogens.a ../../lib/avogadro2/staticplugins/ImportPQR.a ../../lib/avogadro2/staticplugins/NucleicInput.a ../../lib/avogadro2/staticplugins/InsertFragment.a ../../lib/avogadro2/staticplugins/Label.a ../../lib/avogadro2/staticplugins/LabelEditor.a ../../lib/avogadro2/staticplugins/LammpsInput.a ../../lib/avogadro2/staticplugins/LineFormatInput.a ../../lib/avogadro2/staticplugins/Manipulator.a ../../lib/avogadro2/staticplugins/MeasureTool.a ../../lib/avogadro2/staticplugins/MolecularProperties.a ../../lib/avogadro2/staticplugins/MongoChem.a ../../lib/avogadro2/staticplugins/Navigator.a ../../lib/avogadro2/staticplugins/NetworkDatabases.a ../../lib/avogadro2/staticplugins/OpenBabel.a ../../lib/avogadro2/staticplugins/OpenMMInput.a ../../lib/avogadro2/staticplugins/PlayerTool.a ../../lib/avogadro2/staticplugins/PropertyTables.a ../../lib/avogadro2/staticplugins/POVRay.a ../../lib/avogadro2/staticplugins/ResetView.a ../../lib/avogadro2/staticplugins/Select.a ../../lib/avogadro2/staticplugins/Selection.a ../../lib/avogadro2/staticplugins/SpaceGroup.a ../../lib/avogadro2/staticplugins/Surfaces.a ../../lib/avogadro2/staticplugins/SVG.a ../../lib/avogadro2/staticplugins/Spectra.a ../../lib/avogadro2/staticplugins/VRML.a ../../lib/avogadro2/staticplugins/apbs.a ../../lib/avogadro2/staticplugins/Cp2kInput.a ../../lib/avogadro2/staticplugins/GamessInput.a ../../lib/avogadro2/staticplugins/commands.a ../../lib/avogadro2/staticplugins/QuantumInput.a ../../lib/avogadro2/staticplugins/ScriptFileFormats.a ../../lib/avogadro2/staticplugins/ScriptCharges.a ../../lib/avogadro2/staticplugins/PluginDownloader.a ../../lib/avogadro2/staticplugins/BallStick.a ../../lib/avogadro2/staticplugins/CloseContacts.a ../../lib/avogadro2/staticplugins/Force.a ../../lib/avogadro2/staticplugins/Licorice.a ../../lib/avogadro2/staticplugins/Meshes.a ../../lib/avogadro2/staticplugins/NonCovalent.a ../../lib/avogadro2/staticplugins/VanDerWaals.a ../../lib/avogadro2/staticplugins/VanDerWaalsAO.a ../../lib/avogadro2/staticplugins/Wireframe.a ../../lib/avogadro2/staticplugins/OverlayAxes.a ../../lib/avogadro2/staticplugins/QTAIMExtension.a ../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a ../../lib/libAvogadroQtOpenGL.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 ../../thirdparty/libgwavi/libgwavi.a /usr/lib64/libQt5Svg.so.5.15.10 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 ../../lib/libAvogadroMoleQueue.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Network.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 ../../lib/libAvogadroQuantumIO.so.1.97.0 ../../lib/libAvogadroCalc.so.1.97.0 /usr/lib64/libQt5Network.so.5.15.10 /usr/lib64/libarchive.so /usr/lib64/libQt5Concurrent.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 ../../lib/libAvogadroQtGui.so.1.97.0 ../../lib/libAvogadroIO.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 ../../lib/libAvogadroCore.so.1.97.0 ../../lib/libAvogadroRendering.so.1.97.0 /usr/lib64/libGLEW.so /usr/lib64/libGL.so /usr/lib64/libGLU.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtPlugins.so.1.97.0 ../../lib/libAvogadroQtPlugins.so.1 ../../lib/libAvogadroQtPlugins.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:61: warning: type ‘Avogadro::QtPlugins::BasisOption’ violates the C++ One Definition Rule [-Wodr] 61 | enum BasisOption | /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:59: note: an enum with different value name is defined in another translation unit 59 | enum BasisOption | /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:63: note: name ‘BasisSZVGTH’ differs from name ‘BasisSTO3G’ defined in another translation unit 63 | BasisSZVGTH = 0, | /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:61: note: mismatching definition 61 | BasisSTO3G = 0, | /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:40: warning: type ‘Avogadro::QtPlugins::CalculateOption’ violates the C++ One Definition Rule [-Wodr] 40 | enum CalculateOption | /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:37: note: an enum with different value name is defined in another translation unit 37 | enum CalculateOption | /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:42: note: name ‘CalculateEnergy’ differs from name ‘CalculateSinglePoint’ defined in another translation unit 42 | CalculateEnergy = 0, | /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:39: note: mismatching definition 39 | CalculateSinglePoint = 0, | make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [100%] Built target AvogadroQtPlugins make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.97.0/build/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' + pushd build/docs ~/build/BUILD/avogadrolibs-1.97.0/build/docs ~/build/BUILD/avogadrolibs-1.97.0 + doxygen warning: Tag 'OUTPUT_TEXT_DIRECTION' at line 102 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 1244 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1549 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1862 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 1878 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1952 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 2057 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2266 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2308 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2315 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2561 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. warning: source 'images' is not a readable file or directory... skipping. Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/icons Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/icons/fallback Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/icons/fallback/64x64 Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/icons/fallback/32x32 Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/icons/colormap Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/scripts Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/install Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/contrib Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/api Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/api/class Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/_templates Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/_images Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/_images/400px Reading and parsing tag files Parsing files Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angletools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angletools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/a/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:177: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:188: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:38: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:42: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:83: warning: unbalanced grouping commands tom.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper-inline.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper-inline.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avogadrocore.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avogadrocore.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avospglib.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avospglib.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/basisset.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/basisset.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/color3f.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/color3f.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elements.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elements.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussiansettools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussiansettools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mdlvalence_p.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mdlvalence_p.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/a/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:88: warning: unbalanced grouping commands vogadro/core/molecule.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mutex.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mutex.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/nameatomtyper.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/nameatomtyper.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuecolors.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuecolors.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/sharedmutex.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/sharedmutex.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slatersettools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slatersettools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroups.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroups.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/symbolatomtyper.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/symbolatomtyper.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/utilities.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/utilities.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variantmap.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variantmap.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cjsonformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cjsonformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cmlformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cmlformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/dcdformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/dcdformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mdlformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mdlformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mmtfformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mmtfformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/trrformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/trrformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/vaspformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/vaspformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/xyzformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/xyzformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jobobject.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jobobject.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuemanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuemanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/a/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.h:128: warning: unbalanced grouping commands vogadro/molequeue/molequeuewidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/matrixserialization.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/matrixserialization.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/moleculedeserializer.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/moleculedeserializer.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/moleculeserializer.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/moleculeserializer.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/utils.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/utils.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/backgroundfileformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/backgroundfileformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementitem_p.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementitem_p.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementtranslator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementtranslator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictablescene_p.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictablescene_p.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictableview.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictableview.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentatom.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentatom.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentbond.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentbond.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pluginlayermanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pluginlayermanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/utilities.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/utilities.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/viewfactory.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/viewfactory.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/activeobjects.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/activeobjects.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/qttextrenderstrategy.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/qttextrenderstrategy.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessus.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessus.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussiancube.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussiancube.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussianfchk.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussianfchk.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/molden.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/molden.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/mopacaux.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/mopacaux.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemlog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemlog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/avogadrogl.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/avogadrogl.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/avogadrorendering.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/avogadrorendering.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h... Preprocessing /builddir/buil/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:77: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:84: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:91: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:103: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:110: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:117: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:124: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:131: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:138: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h:116: warning: unbalanced grouping commands d/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel2d.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel2d.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel3d.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel3d.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textrenderstrategy.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textrenderstrategy.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/volumegeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/volumegeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkAvogadroActor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkAvogadroActor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkglwidget.h... /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:21: warning: Compound Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:59: warning: Compound Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:48: warning: Compound Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:47: warning: Compound Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.h:19: warning: Compound Avogadro::Core::AtomUtilities is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:23: warning: Compound Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:21: warning: Compound Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:86: warning: Compound Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:11: warning: Compound Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h:19: warning: Compound Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.h:34: warning: Compound Avogadro::Core::SecondaryStructureAssigner is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.h:20: warning: Compound Avogadro::Core::hBondRecord is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:22: warning: Compound Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h:32: warning: Compound Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.h:57: warning: Compound Avogadro::Io::LammpsDataFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/vaspformat.h:51: warning: Compound Avogadro::Io::OutcarFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.h:24: warning: Compound Avogadro::QtGui::ElementDetail is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementitem_p.h:24: warning: Compound Avogadro::QtGui::ElementItem is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:20: warning: Compound Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.h:21: warning: Compound Avogadro::QtGui::HydrogenTools is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:19: warning: Compound Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictablescene_p.h:25: warning: Compound Avogadro::QtGui::PeriodicTableScene is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:670: warning: Compound Avogadro::QtGui::RWAtom is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:677: warning: Compound Avogadro::QtGui::RWBond is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:26: warning: Compound Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:37: warning: Compound Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessus.h:18: warning: Compound Avogadro::QuantumIO::GAMESSUSOutput is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:77: warning: Compound Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussiancube.h:17: warning: Compound Avogadro::QuantumIO::GaussianCube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussianfchk.h:18: warning: Compound Avogadro::QuantumIO::GaussianFchk is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/molden.h:18: warning: Compound Avogadro::QuantumIO::MoldenFile is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/mopacaux.h:18: warning: Compound Avogadro::QuantumIO::MopacAux is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemlog.h:19: warning: Compound Avogadro::QuantumIO::NWChemLog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:14: warning: Compound Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h:14: warning: Compound Avogadro::Rendering::BezierGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:25: warning: Compound Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:65: warning: Compound Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:112: warning: Compound Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:16: warning: Compound Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:25: warning: Compound Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h:26: warning: Compound Avogadro::Rendering::EigenData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:35: warning: Compound Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:38: warning: Compound Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:25: warning: Compound Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:25: warning: Compound Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:28: warning: Compound Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:42: warning: Compound Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:21: warning: Compound Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:92: warning: Compound Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:17: warning: Compound Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:28: warning: Compound Avogadro::TypeTraits is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:39: warning: Compound Avogadro::TypeTraits< char > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:116: warning: Compound Avogadro::TypeTraits< double > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:105: warning: Compound Avogadro::TypeTraits< float > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:83: warning: Compound Avogadro::TypeTraits< int > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:61: warning: Compound Avogadro::TypeTraits< short > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:50: warning: Compound Avogadro::TypeTraits< unsigned char > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:94: warning: Compound Avogadro::TypeTraits< unsigned int > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:72: warning: Compound Avogadro::TypeTraits< unsigned short > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkglwidget.h:42: warning: Compound Avogadro::VTK::vtkGLWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:217: warning: no matching class member found for template < Molecule_T > BondTemplate< Molecule_T >::AtomType getOtherAtom(Avogadro::Core::BondTemplate< Molecule_T >::Molecule_T::AtomType atom) const Possible candidates: 'AtomType BondTemplate< Molecule_T >::getOtherAtom(Index index) const' at line 99 of file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h 'AtomType BondTemplate< Molecule_T >::getOtherAtom(AtomType atom) const' at line 104 of file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkAvogadroActor.h:35: warning: Member override (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkAvogadroActor.h:62: warning: Member m_scene (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkAvogadroActor.h:63: warning: Member m_bounds[6] (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkAvogadroActor.h:65: warning: Member m_initialized (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:16: warning: Member Matrix3 (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:17: warning: Member Matrix4 (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:18: warning: Member MatrixX (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:20: warning: Member Matrix2f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:21: warning: Member Matrix3f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:22: warning: Member Matrix4f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:23: warning: Member MatrixXf (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:16: warning: Member Vector3 (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:17: warning: Member Vector4 (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:19: warning: Member Vector2f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:20: warning: Member Vector3f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:21: warning: Member Vector4f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:22: warning: Member Vector2i (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:23: warning: Member Vector3i (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:24: warning: Member Vector4i (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:25: warning: Member Vector2ub (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:26: warning: Member Vector3ub (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:27: warning: Member Vector4ub (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angletools.h:15: warning: Member bondAngle(const Vector3 &b0, const Vector3 &b1) (function) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angletools.h:26: warning: Member dihedralAngle(const Vector3 &b0, const Vector3 &b1, const Vector3 &b2) (function) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angletools.h:39: warning: Member calcAngle(const Vector3 &v1, const Vector3 &v2, const Vector3 &v3) (function) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angletools.h:45: warning: Member calcDihedral(const Vector3 &v1, const Vector3 &v2, const Vector3 &v3, const Vector3 &v4) (function) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avogadrocore.h:39: warning: Member MaxIndex (variable) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:32: warning: Member points[8] (variable) of struct Avogadro::Frustrum is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:33: warning: Member planes[4] (variable) of struct Avogadro::Frustrum is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:35: warning: Member name() (function) of class Avogadro::TypeTraits is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:46: warning: Member name() (function) of class Avogadro::TypeTraits< char > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:123: warning: Member name() (function) of class Avogadro::TypeTraits< double > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:112: warning: Member name() (function) of class Avogadro::TypeTraits< float > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:90: warning: Member name() (function) of class Avogadro::TypeTraits< int > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:68: warning: Member name() (function) of class Avogadro::TypeTraits< short > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:57: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned char > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:101: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned int > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:79: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned short > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h:107: warning: Member nameForModel(const std::string &identifier) const (function) of class Avogadro::Calc::ChargeManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h:56: warning: argument 'format' of command @param is not found in the argument list of ChargeManager::registerModel(ChargeModel *model) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h:56: warning: The following parameter of Avogadro::Calc::ChargeManager::registerModel(ChargeModel *model) is not documented: parameter 'model' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h:83: warning: Member partialCharges(Core::Molecule &mol) const =0 (function) of class Avogadro::Calc::ChargeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h:96: warning: argument 'array' of command @param is not found in the argument list of ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h:96: warning: The following parameter of Avogadro::Calc::ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const is not documented: parameter 'points' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h:35: warning: Member DefaultModel(const std::string &identifier="") (function) of class Avogadro::Calc::DefaultModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h:80: warning: Member m_identifier (variable) of class Avogadro::Calc::DefaultModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h:81: warning: Member m_elements (variable) of class Avogadro::Calc::DefaultModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:19: warning: Member Angle (typedef) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:19: warning: Member Dihedral (typedef) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:15: warning: Member AtomHybridization (enumeration) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:32: warning: Member AtomicNumber (enumeration) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:381: warning: Member operator==(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:388: warning: Member operator!=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:394: warning: Member operator<(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:401: warning: Member operator>(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:407: warning: Member operator<=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:413: warning: Member operator>=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:419: warning: Member swap(Array< T > &lhs, Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avogadrocore.h:64: warning: Member isCustomElement(unsigned char atomicNumber) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:59: warning: Member ALAData("ALA", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HB3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:88: warning: Member CYSData("CYS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "SG", 16 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HG", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "SG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "SG", "HG" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:119: warning: Member ASPData("ASP", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OD1", 8 }, { "OD2", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD2", 1 }, { "HD2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "OD2" }, { "OD2", "HD2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "OD1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:153: warning: Member GLUData("GLU", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE1", 8 }, { "OE2", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "OE2" }, { "OE2", "HE2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CD", "OE1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:193: warning: Member PHEData("PHE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HZ", 1 }, { "HZ", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "HZ" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:223: warning: Member GLYData("GLY", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA2", 1 }, { "HA3", 1 }, { "HA3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "HA2" }, { "CA", "HA3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:246: warning: Member HISData("HIS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "ND1", 7 }, { "CD2", 6 }, { "CE1", 6 }, { "NE2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "ND1" }, { "ND1", "HD1" }, { "CD2", "NE2" }, { "CD2", "HD2" }, { "CE1", "NE2" }, { "CE1", "HE1" }, { "NE2", "HE2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD2" }, { "ND1", "CE1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:275: warning: Member ILEData("ILE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG1", 6 }, { "CG2", 6 }, { "CD1", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG12", 1 }, { "HG13", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HD11", 1 }, { "HD12", 1 }, { "HD13", 1 }, { "HD13", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "CG1", "CD1" }, { "CG1", "HG12" }, { "CG1", "HG13" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "CD1", "HD11" }, { "CD1", "HD12" }, { "CD1", "HD13" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:291: warning: Member LYSData("LYS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "CE", 6 }, { "NZ", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HZ1", 1 }, { "HZ2", 1 }, { "HZ3", 1 }, { "HZ3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "CE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "CE", "NZ" }, { "CE", "HE2" }, { "CE", "HE3" }, { "NZ", "HZ1" }, { "NZ", "HZ2" }, { "NZ", "HZ3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:308: warning: Member LEUData("LEU", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HD11", 1 }, { "HD12", 1 }, { "HD13", 1 }, { "HD21", 1 }, { "HD22", 1 }, { "HD23", 1 }, { "HD23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD1" }, { "CG", "CD2" }, { "CG", "HG" }, { "CD1", "HD11" }, { "CD1", "HD12" }, { "CD1", "HD13" }, { "CD2", "HD21" }, { "CD2", "HD22" }, { "CD2", "HD23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:324: warning: Member METData("MET", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "CE", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HE3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "SD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "SD", "CE" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:352: warning: Member ASNData("ASN", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OD1", 8 }, { "ND2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD21", 1 }, { "HD22", 1 }, { "HD22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "ND2" }, { "ND2", "HD21" }, { "ND2", "HD22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "OD1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:388: warning: Member PROData("PRO", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OXT", 8 }, { "H", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HD3", 1 } }, { { "N", "CA" }, { "N", "CD" }, { "N", "H" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "HD2" }, { "CD", "HD3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:426: warning: Member GLNData("GLN", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE1", 8 }, { "NE2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE21", 1 }, { "HE22", 1 }, { "HE22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "NE2" }, { "NE2", "HE21" }, { "NE2", "HE22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CD", "OE1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:453: warning: Member ARGData("ARG", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "NE", 7 }, { "CZ", 6 }, { "NH1", 7 }, { "NH2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE", 1 }, { "HH11", 1 }, { "HH12", 1 }, { "HH21", 1 }, { "HH22", 1 }, { "HH22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "NE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "NE", "CZ" }, { "NE", "HE" }, { "CZ", "NH1" }, { "NH1", "HH11" }, { "NH1", "HH12" }, { "NH2", "HH21" }, { "NH2", "HH22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CZ", "NH2" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:471: warning: Member SERData("SER", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OG", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HG", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "OG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OG", "HG" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:502: warning: Member THRData("THR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OG1", 8 }, { "CG2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG1", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HG23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "OG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "OG1", "HG1" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:539: warning: Member VALData("VAL", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG1", 6 }, { "CG2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG11", 1 }, { "HG12", 1 }, { "HG13", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HG23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "CG1", "HG11" }, { "CG1", "HG12" }, { "CG1", "HG13" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:580: warning: Member TRPData("TRP", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "NE1", 7 }, { "CE2", 6 }, { "CE3", 6 }, { "CZ2", 6 }, { "CZ3", 6 }, { "CH2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HE1", 1 }, { "HE3", 1 }, { "HZ2", 1 }, { "HZ3", 1 }, { "HH2", 1 }, { "HH2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "NE1" }, { "CD1", "HD1" }, { "CD2", "CE3" }, { "NE1", "CE2" }, { "NE1", "HE1" }, { "CE2", "CZ2" }, { "CE3", "HE3" }, { "CZ2", "HZ2" }, { "CZ3", "CH2" }, { "CZ3", "HZ3" }, { "CH2", "HH2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE3", "CZ3" }, { "CZ2", "CH2" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:602: warning: Member TYRData("TYR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OH", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HH", 1 }, { "HH", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "OH" }, { "OH", "HH" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:618: warning: Member DAData("DA", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H61", 1 }, { "H62", 1 }, { "H62", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "H61" }, { "N6", "H62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:645: warning: Member DCData("DC", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H41", 1 }, { "H42", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "C4", "N4" }, { "C4", "C5" }, { "N4", "H41" }, { "N4", "H42" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "N3", "C4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:666: warning: Member DGData("DG", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H21", 1 }, { "H21", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "N2" }, { "N2", "H21" }, { "N2", "H22" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:693: warning: Member DTData("DT", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "C7", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H3", 1 }, { "H71", 1 }, { "H72", 1 }, { "H73", 1 }, { "H73", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "H3" }, { "C4", "C5" }, { "C5", "C7" }, { "C7", "H71" }, { "C7", "H72" }, { "C7", "H73" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "C4", "O4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:716: warning: Member DIData("DI", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H1", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:741: warning: Member AData("A", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H61", 1 }, { "H62", 1 }, { "H62", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "H61" }, { "N6", "H62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:768: warning: Member CData("C", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H41", 1 }, { "H42", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "C4", "N4" }, { "C4", "C5" }, { "N4", "H41" }, { "N4", "H42" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "N3", "C4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:789: warning: Member GData("G", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H21", 1 }, { "H21", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "N2" }, { "N2", "H21" }, { "N2", "H22" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:816: warning: Member UData("U", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H3", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "H3" }, { "C4", "C5" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "C4", "O4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:837: warning: Member IData("I", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H1", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:864: warning: Member HEMData("HEM", { { "CHA", 6 }, { "CHB", 6 }, { "CHC", 6 }, { "CHD", 6 }, { "C1A", 6 }, { "C2A", 6 }, { "C3A", 6 }, { "C4A", 6 }, { "CMA", 6 }, { "CAA", 6 }, { "CBA", 6 }, { "CGA", 6 }, { "O1A", 8 }, { "O2A", 8 }, { "C1B", 6 }, { "C2B", 6 }, { "C3B", 6 }, { "C4B", 6 }, { "CMB", 6 }, { "CAB", 6 }, { "CBB", 6 }, { "C1C", 6 }, { "C2C", 6 }, { "C3C", 6 }, { "C4C", 6 }, { "CMC", 6 }, { "CAC", 6 }, { "CBC", 6 }, { "C1D", 6 }, { "C2D", 6 }, { "C3D", 6 }, { "C4D", 6 }, { "CMD", 6 }, { "CAD", 6 }, { "CBD", 6 }, { "CGD", 6 }, { "O1D", 8 }, { "O2D", 8 }, { "NA", 7 }, { "NB", 7 }, { "NC", 7 }, { "ND", 7 }, { "FE", 26 }, { "HHB", 1 }, { "HHC", 1 }, { "HHD", 1 }, { "HMA", 1 }, { "HMAA", 1 }, { "HMAB", 1 }, { "HAA", 1 }, { "HAAA", 1 }, { "HBA", 1 }, { "HBAA", 1 }, { "HMB", 1 }, { "HMBA", 1 }, { "HMBB", 1 }, { "HAB", 1 }, { "HBB", 1 }, { "HBBA", 1 }, { "HMC", 1 }, { "HMCA", 1 }, { "HMCB", 1 }, { "HAC", 1 }, { "HBC", 1 }, { "HBCA", 1 }, { "HMD", 1 }, { "HMDA", 1 }, { "HMDB", 1 }, { "HAD", 1 }, { "HADA", 1 }, { "HBD", 1 }, { "HBDA", 1 }, { "H2A", 1 }, { "H2D", 1 }, { "H2D", 1 } }, { { "CHA", "C1A" }, { "CHA", "HHA" }, { "CHB", "C4A" }, { "CHB", "HHB" }, { "CHC", "C4B" }, { "CHC", "HHC" }, { "CHD", "C1D" }, { "CHD", "HHD" }, { "C1A", "NA" }, { "C2A", "C3A" }, { "C2A", "CAA" }, { "C3A", "CMA" }, { "C4A", "NA" }, { "CMA", "HMA" }, { "CMA", "HMAA" }, { "CMA", "HMAB" }, { "CAA", "CBA" }, { "CAA", "HAA" }, { "CAA", "HAAA" }, { "CBA", "CGA" }, { "CBA", "HBA" }, { "CBA", "HBAA" }, { "CGA", "O2A" }, { "O2A", "H2A" }, { "C1B", "C2B" }, { "C1B", "NB" }, { "C2B", "CMB" }, { "C3B", "C4B" }, { "C3B", "CAB" }, { "CMB", "HMB" }, { "CMB", "HMBA" }, { "CMB", "HMBB" }, { "CAB", "HAB" }, { "CBB", "HBB" }, { "CBB", "HBBA" }, { "C1C", "C2C" }, { "C1C", "NC" }, { "C2C", "CMC" }, { "C3C", "C4C" }, { "C3C", "CAC" }, { "C4C", "NC" }, { "CMC", "HMC" }, { "CMC", "HMCA" }, { "CMC", "HMCB" }, { "CAC", "HAC" }, { "CBC", "HBC" }, { "CBC", "HBCA" }, { "C1D", "C2D" }, { "C2D", "CMD" }, { "C3D", "C4D" }, { "C3D", "CAD" }, { "C4D", "ND" }, { "CMD", "HMD" }, { "CMD", "HMDA" }, { "CMD", "HMDB" }, { "CAD", "CBD" }, { "CAD", "HAD" }, { "CAD", "HADA" }, { "CBD", "CGD" }, { "CBD", "HBD" }, { "CBD", "HBDA" }, { "CGD", "O2D" }, { "O2D", "H2D" }, { "FE", "NA" }, { "FE", "NB" }, { "FE", "NC" }, { "FE", "ND" } }, { { "CHA", "C4D" }, { "CHB", "C1B" }, { "CHC", "C1C" }, { "CHD", "C4C" }, { "C1A", "C2A" }, { "C3A", "C4A" }, { "CGA", "O1A" }, { "C2B", "C3B" }, { "C4B", "NB" }, { "CAB", "CBB" }, { "C2C", "C3C" }, { "CAC", "CBC" }, { "C1D", "ND" }, { "C2D", "C3D" }, { "CGD", "O1D" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:916: warning: Member HOHData("HOH", { { "O", 8 }, { "H1", 1 }, { "H1", 1 } }, { { "O", "H1" }, { "O", "H2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:923: warning: Member SO4Data("SO4", { { "S", 16 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O3", 8 } }, { { "S", "O3" }, { "S", "O4" } }, { { "S", "O1" }, { "S", "O2" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:931: warning: Member GOLData("GOL", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "O3", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H2", 1 }, { "HO2", 1 }, { "H31", 1 }, { "H32", 1 }, { "H32", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "C3" }, { "C2", "H2" }, { "O2", "HO2" }, { "C3", "O3" }, { "C3", "H31" }, { "C3", "H32" }, { "O3", "HO3" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:963: warning: Member EDOData("EDO", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "HO2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:987: warning: Member MSEData("MSE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "SE", 34 }, { "CE", 6 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HXT", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "OXT", "HXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "SE" }, { "CG", "HG2" }, { "CG", "HG3" }, { "SE", "CE" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1015: warning: Member NAGData("NAG", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "N2", 7 }, { "O1", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "O7", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H81", 1 }, { "H82", 1 }, { "H83", 1 }, { "HN2", 1 }, { "HO1", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "N2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "N2" }, { "C8", "H81" }, { "C8", "H82" }, { "C8", "H83" }, { "N2", "HN2" }, { "O1", "HO1" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, { { "C7", "O7" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1035: warning: Member PO4Data("PO4", { { "P", 15 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O3", 8 } }, { { "P", "O2" }, { "P", "O3" }, { "P", "O4" } }, { { "P", "O1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1043: warning: Member ACTData("ACT", { { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CH3", 6 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "OXT" }, { "C", "CH3" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1060: warning: Member PEGData("PEG", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H41", 1 }, { "H42", 1 }, { "H42", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O4" }, { "C4", "H41" }, { "C4", "H42" }, { "O4", "HO4" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1098: warning: Member BMAData("BMA", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1115: warning: Member MANData("MAN", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1132: warning: Member DMSData("DMS", { { "S", 16 }, { "O", 8 }, { "C1", 6 }, { "C2", 6 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "S", "C1" }, { "S", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "H21" }, { "C2", "H22" }, { "C2", "H23" } }, { { "S", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1155: warning: Member ADPData("ADP", { { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOB2", 1 }, { "HOB3", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3B", "HOB3" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1185: warning: Member FADData("FAD", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4X", 6 }, { "N5", 7 }, { "C5X", 6 }, { "C6", 6 }, { "C7", 6 }, { "C7M", 6 }, { "C8", 6 }, { "C8M", 6 }, { "C9", 6 }, { "C9A", 6 }, { "N10", 7 }, { "C10", 6 }, { "C1'", 6 }, { "C2'", 6 }, { "O2'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C4'", 6 }, { "O4'", 8 }, { "C5'", 6 }, { "O5'", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "HN3", 1 }, { "H6", 1 }, { "HM71", 1 }, { "HM72", 1 }, { "HM73", 1 }, { "HM81", 1 }, { "HM82", 1 }, { "HM83", 1 }, { "H9", 1 }, { "H1'1", 1 }, { "H1'2", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H4'", 1 }, { "HO4'", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H5'2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3P" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "N1", "C2" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4X" }, { "C4X", "C10" }, { "N5", "C5X" }, { "C5X", "C9A" }, { "C6", "C7" }, { "C6", "H6" }, { "C7", "C7M" }, { "C7M", "HM71" }, { "C7M", "HM72" }, { "C7M", "HM73" }, { "C8", "C8M" }, { "C8", "C9" }, { "C8M", "HM81" }, { "C8M", "HM82" }, { "C8M", "HM83" }, { "C9", "H9" }, { "C9A", "N10" }, { "N10", "C10" }, { "N10", "C1'" }, { "C1'", "C2'" }, { "C1'", "H1'1" }, { "C1'", "H1'2" }, { "C2'", "O2'" }, { "C2'", "C3'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C3'", "O3'" }, { "C3'", "C4'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C4'", "O4'" }, { "C4'", "C5'" }, { "C4'", "H4'" }, { "O4'", "HO4'" }, { "C5'", "O5'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "O5'", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "N1", "C10" }, { "C2", "O2" }, { "C4", "O4" }, { "C4X", "N5" }, { "C5X", "C6" }, { "C7", "C8" }, { "C9", "C9A" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1241: warning: Member ACEData("ACE", { { "C", 6 }, { "O", 8 }, { "CH3", 6 }, { "H", 1 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "CH3" }, { "C", "H" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1258: warning: Member MPDData("MPD", { { "C1", 6 }, { "C2", 6 }, { "O2", 8 }, { "CM", 6 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "HO2", 1 }, { "HM1", 1 }, { "HM2", 1 }, { "HM3", 1 }, { "H31", 1 }, { "H32", 1 }, { "H4", 1 }, { "HO4", 1 }, { "H51", 1 }, { "H52", 1 }, { "H52", 1 } }, { { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "O2" }, { "C2", "CM" }, { "C2", "C3" }, { "O2", "HO2" }, { "CM", "HM1" }, { "CM", "HM2" }, { "CM", "HM3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O4" }, { "C4", "C5" }, { "C4", "H4" }, { "O4", "HO4" }, { "C5", "H51" }, { "C5", "H52" }, { "C5", "H53" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1276: warning: Member GLCData("GLC", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1293: warning: Member ATPData("ATP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "O3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1326: warning: Member MESData("MES", { { "O1", 8 }, { "C2", 6 }, { "C3", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "S", 16 }, { "O1S", 8 }, { "O2S", 8 }, { "O3S", 8 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "HN4", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H81", 1 } }, { { "O1", "C2" }, { "O1", "C6" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "N4" }, { "C3", "H31" }, { "C3", "H32" }, { "N4", "C5" }, { "N4", "C7" }, { "N4", "HN4" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "S" }, { "C8", "H81" }, { "C8", "H82" }, { "S", "O3S" } }, { { "S", "O1S" }, { "S", "O2S" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1343: warning: Member TRSData("TRS", { { "C", 6 }, { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "N", 7 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "HN1", 1 }, { "HN2", 1 }, { "HN3", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO2", 1 } }, { { "C", "C1" }, { "C", "C2" }, { "C", "C3" }, { "C", "N" }, { "C1", "O1" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "O3" }, { "C3", "H31" }, { "C3", "H32" }, { "N", "HN1" }, { "N", "HN2" }, { "N", "HN3" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1372: warning: Member PG4Data("PG4", { { "O1", 8 }, { "C1", 6 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O3", 8 }, { "C5", 6 }, { "C6", 6 }, { "O4", 8 }, { "C7", 6 }, { "C8", 6 }, { "O5", 8 }, { "HO1", 1 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H41", 1 }, { "H42", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H82", 1 }, { "H82", 1 } }, { { "O1", "C1" }, { "O1", "HO1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O3" }, { "C4", "H41" }, { "C4", "H42" }, { "O3", "C5" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "O4" }, { "C6", "H61" }, { "C6", "H62" }, { "O4", "C7" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "O5" }, { "C8", "H81" }, { "C8", "H82" }, { "O5", "HO5" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1393: warning: Member PGEData("PGE", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "C6", 6 }, { "C5", 6 }, { "O3", 8 }, { "H1", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H2", 1 }, { "H22", 1 }, { "H3", 1 }, { "H32", 1 }, { "H4", 1 }, { "H42", 1 }, { "HO4", 1 }, { "H6", 1 }, { "H62", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H1" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H2" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H3" }, { "C3", "H32" }, { "C4", "O3" }, { "C4", "H4" }, { "C4", "H42" }, { "O4", "C6" }, { "O4", "HO4" }, { "C6", "C5" }, { "C6", "H6" }, { "C6", "H62" }, { "C5", "O3" }, { "C5", "H5" }, { "C5", "H52" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1410: warning: Member NADData("NAD", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H4N", 1 }, { "H5N", 1 }, { "H5N", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "H4N" }, { "C5N", "C6N" }, { "C5N", "H5N" }, { "C6N", "H6N" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "N1N", "C6N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C4N", "C5N" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1457: warning: Member FUCData("FUC", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H63", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO3", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "H61" }, { "C6", "H62" }, { "C6", "H63" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1474: warning: Member NH2Data("NH2", { { "N", 7 }, { "HN1", 1 }, { "HN1", 1 } }, { { "N", "HN1" }, { "N", "HN2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1481: warning: Member FMTData("FMT", { { "C", 6 }, { "O1", 8 }, { "O2", 8 }, { "H", 1 }, { "H", 1 } }, { { "C", "O2" }, { "C", "H" }, { "O2", "HO2" } }, { { "C", "O1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1489: warning: Member NAPData("NAP", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "P2B", 15 }, { "O1X", 8 }, { "O2X", 8 }, { "O3X", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H4N", 1 }, { "H5N", 1 }, { "H6N", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "P2B" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "H4N" }, { "C5N", "C6N" }, { "C5N", "H5N" }, { "C6N", "H6N" }, { "P2B", "O2X" }, { "P2B", "O3X" }, { "O2X", "HOP2" }, { "O3X", "HOP3" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "N1N", "C6N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C4N", "C5N" }, { "P2B", "O1X" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1539: warning: Member SEPData("SEP", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "OG", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HXT", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "OG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OG", "P" }, { "C", "OXT" }, { "OXT", "HXT" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "C", "O" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1579: warning: Member GDPData("GDP", { { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOB2", 1 }, { "HOB3", 1 }, { "HOA2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3B", "HOB3" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1609: warning: Member GALData("GAL", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1626: warning: Member SF4Data("SF4", { { "FE1", 26 }, { "FE2", 26 }, { "FE3", 26 }, { "FE4", 26 }, { "S1", 16 }, { "S2", 16 }, { "S3", 16 }, { "S3", 16 } }, { { "FE1", "S2" }, { "FE1", "S3" }, { "FE1", "S4" }, { "FE2", "S1" }, { "FE2", "S3" }, { "FE2", "S4" }, { "FE3", "S1" }, { "FE3", "S2" }, { "FE3", "S4" }, { "FE4", "S1" }, { "FE4", "S2" }, { "FE4", "S3" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1651: warning: Member BGCData("BGC", { { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "C1", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H1", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C2", "C3" }, { "C2", "C1" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1668: warning: Member FMNData("FMN", { { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4A", 6 }, { "N5", 7 }, { "C5A", 6 }, { "C6", 6 }, { "C7", 6 }, { "C7M", 6 }, { "C8", 6 }, { "C8M", 6 }, { "C9", 6 }, { "C9A", 6 }, { "N10", 7 }, { "C10", 6 }, { "C1'", 6 }, { "C2'", 6 }, { "O2'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C4'", 6 }, { "O4'", 8 }, { "C5'", 6 }, { "O5'", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "HN3", 1 }, { "H6", 1 }, { "HM71", 1 }, { "HM72", 1 }, { "HM73", 1 }, { "HM81", 1 }, { "HM82", 1 }, { "HM83", 1 }, { "H9", 1 }, { "H1'1", 1 }, { "H1'2", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H4'", 1 }, { "HO4'", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N1", "C2" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4A" }, { "C4A", "C10" }, { "N5", "C5A" }, { "C5A", "C9A" }, { "C6", "C7" }, { "C6", "H6" }, { "C7", "C7M" }, { "C7M", "HM71" }, { "C7M", "HM72" }, { "C7M", "HM73" }, { "C8", "C8M" }, { "C8", "C9" }, { "C8M", "HM81" }, { "C8M", "HM82" }, { "C8M", "HM83" }, { "C9", "H9" }, { "C9A", "N10" }, { "N10", "C10" }, { "N10", "C1'" }, { "C1'", "C2'" }, { "C1'", "H1'1" }, { "C1'", "H1'2" }, { "C2'", "O2'" }, { "C2'", "C3'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C3'", "O3'" }, { "C3'", "C4'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C4'", "O4'" }, { "C4'", "C5'" }, { "C4'", "H4'" }, { "O4'", "HO4'" }, { "C5'", "O5'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "O5'", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "N1", "C10" }, { "C2", "O2" }, { "C4", "O4" }, { "C4A", "N5" }, { "C5A", "C6" }, { "C7", "C8" }, { "C9", "C9A" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1704: warning: Member UNKData("UNK", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HG3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "HG1" }, { "CG", "HG2" }, { "CG", "HG3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1739: warning: Member CITData("CIT", { { "C1", 6 }, { "O1", 8 }, { "O2", 8 }, { "C2", 6 }, { "C3", 6 }, { "O7", 8 }, { "C4", 6 }, { "C5", 6 }, { "O3", 8 }, { "O4", 8 }, { "C6", 6 }, { "O5", 8 }, { "O6", 8 }, { "HO2", 1 }, { "H21", 1 }, { "H22", 1 }, { "HO7", 1 }, { "H41", 1 }, { "H42", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "O2" }, { "C1", "C2" }, { "O2", "HO2" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "O7" }, { "C3", "C4" }, { "C3", "C6" }, { "O7", "HO7" }, { "C4", "C5" }, { "C4", "H41" }, { "C4", "H42" }, { "C5", "O4" }, { "O4", "HO4" }, { "C6", "O6" }, { "O6", "HO6" } }, { { "C1", "O1" }, { "C5", "O3" }, { "C6", "O5" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1767: warning: Member EPEData("EPE", { { "N1", 7 }, { "C2", 6 }, { "C3", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "O8", 8 }, { "C9", 6 }, { "C10", 6 }, { "S", 16 }, { "O1S", 8 }, { "O2S", 8 }, { "O3S", 8 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H82", 1 }, { "HO8", 1 }, { "H91", 1 }, { "H92", 1 }, { "H101", 1 }, { "H102", 1 }, { "H102", 1 } }, { { "N1", "C2" }, { "N1", "C6" }, { "N1", "C9" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "N4" }, { "C3", "H31" }, { "C3", "H32" }, { "N4", "C5" }, { "N4", "C7" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "O8" }, { "C8", "H81" }, { "C8", "H82" }, { "O8", "HO8" }, { "C9", "C10" }, { "C9", "H91" }, { "C9", "H92" }, { "C10", "S" }, { "C10", "H101" }, { "C10", "H102" }, { "S", "O3S" }, { "O3S", "HOS3" } }, { { "S", "O1S" }, { "S", "O2S" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1788: warning: Member TPOData("TPO", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG2", 6 }, { "OG1", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HOP2", 1 }, { "HOP3", 1 }, { "HOP3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG2" }, { "CB", "OG1" }, { "CB", "HB" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OG1", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "P", "O1P" }, { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1818: warning: Member PLPData("PLP", { { "N1", 7 }, { "C2", 6 }, { "C2A", 6 }, { "C3", 6 }, { "O3", 8 }, { "C4", 6 }, { "C4A", 6 }, { "O4A", 8 }, { "C5", 6 }, { "C6", 6 }, { "C5A", 6 }, { "O4P", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H2A1", 1 }, { "H2A2", 1 }, { "H2A3", 1 }, { "HO3", 1 }, { "H4A", 1 }, { "H6", 1 }, { "H5A1", 1 }, { "H5A2", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N1", "C6" }, { "C2", "C2A" }, { "C2", "C3" }, { "C2A", "H2A1" }, { "C2A", "H2A2" }, { "C2A", "H2A3" }, { "C3", "O3" }, { "O3", "HO3" }, { "C4", "C4A" }, { "C4", "C5" }, { "C4A", "H4A" }, { "C5", "C5A" }, { "C6", "H6" }, { "C5A", "O4P" }, { "C5A", "H5A1" }, { "C5A", "H5A2" }, { "O4P", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "N1", "C2" }, { "C3", "C4" }, { "C4A", "O4A" }, { "C5", "C6" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1840: warning: Member GTPData("GTP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "O3B", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "O3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "O3B", "PB" }, { "PB", "O2B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1873: warning: Member SAHData("SAH", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HN1", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HXT", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "N", "CA" }, { "N", "HN1" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "SD" }, { "CG", "HG1" }, { "CG", "HG2" }, { "SD", "C5'" }, { "C", "OXT" }, { "OXT", "HXT" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "C", "O" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1904: warning: Member BMEData("BME", { { "C1", 6 }, { "C2", 6 }, { "O1", 8 }, { "S2", 16 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "HO1", 1 }, { "HO1", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "S2" }, { "C2", "H21" }, { "C2", "H22" }, { "O1", "HO1" }, { "S2", "HS2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1928: warning: Member ACYData("ACY", { { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CH3", 6 }, { "HXT", 1 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "OXT" }, { "C", "CH3" }, { "OXT", "HXT" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1947: warning: Member ANPData("ANP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "N3B", 7 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HNB1", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "N3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "PB", "O2B" }, { "PB", "N3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "N3B", "HNB1" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1980: warning: Member IMDData("IMD", { { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "C5", 6 }, { "HN1", 1 }, { "H2", 1 }, { "HN3", 1 }, { "H4", 1 }, { "H4", 1 } }, { { "N1", "C2" }, { "N1", "C5" }, { "N1", "HN1" }, { "C2", "H2" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "H4" }, { "C5", "H5" } }, { { "C2", "N3" }, { "C4", "C5" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2003: warning: Member PCAData("PCA", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HG3", 1 } }, { { "N", "CA" }, { "N", "CD" }, { "N", "H" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "CD", "OE" }, { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2038: warning: Member CSOData("CSO", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "SG", 16 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "OD", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HXT", 1 }, { "HXT", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "SG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "SG", "OD" }, { "C", "OXT" }, { "OXT", "HXT" }, { "OD", "HD" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2071: warning: Member MLIData("MLI", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "O6", 8 }, { "O7", 8 }, { "O8", 8 }, { "O9", 8 }, { "H11", 1 }, { "H11", 1 } }, { { "C1", "C2" }, { "C1", "C3" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O7" }, { "C3", "O9" } }, { { "C2", "O6" }, { "C3", "O8" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2091: warning: Member FESData("FES", { { "FE1", 26 }, { "FE2", 26 }, { "S1", 16 }, { "S1", 16 } }, { { "FE1", "S1" }, { "FE1", "S2" }, { "FE2", "S1" }, { "FE2", "S2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2100: warning: Member NDPData("NDP", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "P2B", 15 }, { "O1X", 8 }, { "O2X", 8 }, { "O3X", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H21N", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H41N", 1 }, { "H42N", 1 }, { "H5N", 1 }, { "H6N", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "P2B" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O2N", "H21N" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "N1N", "C6N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "C5N" }, { "C4N", "H41N" }, { "C4N", "H42N" }, { "C5N", "H5N" }, { "C6N", "H6N" }, { "P2B", "O2X" }, { "P2B", "O3X" }, { "O2X", "HOP2" }, { "O3X", "HOP3" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C5N", "C6N" }, { "P2B", "O1X" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2155: warning: Member AMPData("AMP", { { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP2", 1 }, { "HOP3", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "P", "O2P" }, { "P", "O3P" }, { "P", "O5'" }, { "O2P", "HOP2" }, { "O3P", "HOP3" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "O1P" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2182: warning: Member NO3Data("NO3", { { "N", 7 }, { "O1", 8 }, { "O2", 8 }, { "O2", 8 } }, { { "N", "O2" }, { "N", "O3" } }, { { "N", "O1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2189: warning: Member PTRData("PTR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OH", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HXT", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HO2P", 1 }, { "HO2P", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "OXT", "HXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "OH" }, { "OH", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HO2P" }, { "O3P", "HO3P" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2211: warning: Member IPAData("IPA", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "O2", 8 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "H2", 1 }, { "H31", 1 }, { "H32", 1 }, { "H33", 1 }, { "H33", 1 } }, { { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "H31" }, { "C3", "H32" }, { "C3", "H33" }, { "O2", "HO2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2239: warning: Member COAData("COA", { { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N7A", 7 }, { "C8A", 6 }, { "N9A", 7 }, { "C1B", 6 }, { "C2B", 6 }, { "O2B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "P3B", 15 }, { "O7A", 8 }, { "O8A", 8 }, { "O9A", 8 }, { "C4B", 6 }, { "O4B", 8 }, { "C5B", 6 }, { "O5B", 8 }, { "P1A", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "P2A", 15 }, { "O4A", 8 }, { "O5A", 8 }, { "O6A", 8 }, { "CBP", 6 }, { "CCP", 6 }, { "CDP", 6 }, { "CEP", 6 }, { "CAP", 6 }, { "OAP", 8 }, { "C9P", 6 }, { "O9P", 8 }, { "N8P", 7 }, { "C7P", 6 }, { "C6P", 6 }, { "C5P", 6 }, { "O5P", 8 }, { "N4P", 7 }, { "C3P", 6 }, { "C2P", 6 }, { "S1P", 16 }, { "H2A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H8A", 1 }, { "H1B", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H3B", 1 }, { "HOA8", 1 }, { "HOA9", 1 }, { "H4B", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "HOA2", 1 }, { "HOA5", 1 }, { "H121", 1 }, { "H122", 1 }, { "H131", 1 }, { "H132", 1 }, { "H133", 1 }, { "H141", 1 }, { "H142", 1 }, { "H143", 1 }, { "H10", 1 }, { "HO1", 1 }, { "HN8", 1 }, { "H71", 1 }, { "H72", 1 }, { "H61", 1 }, { "H62", 1 }, { "HN4", 1 }, { "H31", 1 }, { "H32", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "C4A", "N9A" }, { "C5A", "C6A" }, { "C5A", "N7A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "C8A", "N9A" }, { "C8A", "H8A" }, { "N9A", "C1B" }, { "C1B", "C2B" }, { "C1B", "O4B" }, { "C1B", "H1B" }, { "C2B", "O2B" }, { "C2B", "C3B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C3B", "O3B" }, { "C3B", "C4B" }, { "C3B", "H3B" }, { "O3B", "P3B" }, { "P3B", "O8A" }, { "P3B", "O9A" }, { "O8A", "HOA8" }, { "O9A", "HOA9" }, { "C4B", "O4B" }, { "C4B", "C5B" }, { "C4B", "H4B" }, { "C5B", "O5B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "O5B", "P1A" }, { "P1A", "O2A" }, { "P1A", "O3A" }, { "O2A", "HOA2" }, { "O3A", "P2A" }, { "P2A", "O5A" }, { "P2A", "O6A" }, { "O5A", "HOA5" }, { "O6A", "CCP" }, { "CBP", "CCP" }, { "CBP", "CDP" }, { "CBP", "CEP" }, { "CBP", "CAP" }, { "CCP", "H121" }, { "CCP", "H122" }, { "CDP", "H131" }, { "CDP", "H132" }, { "CDP", "H133" }, { "CEP", "H141" }, { "CEP", "H142" }, { "CEP", "H143" }, { "CAP", "OAP" }, { "CAP", "C9P" }, { "CAP", "H10" }, { "OAP", "HO1" }, { "C9P", "N8P" }, { "N8P", "C7P" }, { "N8P", "HN8" }, { "C7P", "C6P" }, { "C7P", "H71" }, { "C7P", "H72" }, { "C6P", "C5P" }, { "C6P", "H61" }, { "C6P", "H62" }, { "C5P", "N4P" }, { "N4P", "C3P" }, { "N4P", "HN4" }, { "C3P", "C2P" }, { "C3P", "H31" }, { "C3P", "H32" }, { "C2P", "S1P" }, { "C2P", "H21" }, { "C2P", "H22" }, { "S1P", "HS1" } }, { { "N1A", "C6A" }, { "C2A", "N3A" }, { "C4A", "C5A" }, { "N7A", "C8A" }, { "P3B", "O7A" }, { "P1A", "O1A" }, { "P2A", "O4A" }, { "C9P", "O9P" }, { "C5P", "O5P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2290: warning: Member KCXData("KCX", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "CE", 6 }, { "NZ", 7 }, { "C", 6 }, { "O", 8 }, { "CX", 6 }, { "OXT", 8 }, { "OQ1", 8 }, { "OQ2", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HZ", 1 }, { "HXT", 1 }, { "HXT", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "CE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "CE", "NZ" }, { "CE", "HE2" }, { "CE", "HE3" }, { "NZ", "CX" }, { "NZ", "HZ" }, { "C", "OXT" }, { "CX", "OQ2" }, { "OXT", "HXT" }, { "OQ2", "HQ2" } }, { { "C", "O" }, { "CX", "OQ1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2308: warning: Member H4BData("H4B", { { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4A", 6 }, { "C8A", 6 }, { "N5", 7 }, { "N8", 7 }, { "C6", 6 }, { "C7", 6 }, { "C9", 6 }, { "O9", 8 }, { "C10", 6 }, { "C11", 6 }, { "O10", 8 }, { "HN21", 1 }, { "HN22", 1 }, { "HN3", 1 }, { "HN5", 1 }, { "HN8", 1 }, { "H6", 1 }, { "H71", 1 }, { "H72", 1 }, { "H9", 1 }, { "HO9", 1 }, { "H10", 1 }, { "H111", 1 }, { "H112", 1 }, { "H113", 1 }, { "H113", 1 } }, { { "N1", "C8A" }, { "C2", "N2" }, { "C2", "N3" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4A" }, { "C4A", "N5" }, { "C8A", "N8" }, { "N5", "C6" }, { "N5", "HN5" }, { "N8", "C7" }, { "N8", "HN8" }, { "C6", "C7" }, { "C6", "C9" }, { "C6", "H6" }, { "C7", "H71" }, { "C7", "H72" }, { "C9", "O9" }, { "C9", "C10" }, { "C9", "H9" }, { "O9", "HO9" }, { "C10", "C11" }, { "C10", "O10" }, { "C10", "H10" }, { "C11", "H111" }, { "C11", "H112" }, { "C11", "H113" }, { "O10", "HO0" } }, { { "N1", "C2" }, { "C4", "O4" }, { "C4A", "C8A" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2329: warning: Member SAMData("SAM", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "CE", 6 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HN1", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "N", "CA" }, { "N", "HN1" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "SD" }, { "CG", "HG1" }, { "CG", "HG2" }, { "SD", "CE" }, { "SD", "C5'" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "C", "O" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2361: warning: Member GNPData("GNP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "N3B", 7 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HNB3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'2", 1 }, { "H5'1", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "N3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "N3B", "PB" }, { "N3B", "HNB3" }, { "PB", "O2B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'2" }, { "C5'", "H5'1" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2394: warning: Member FLCData("FLC", { { "CAC", 6 }, { "CA", 6 }, { "CB", 6 }, { "CBC", 6 }, { "CG", 6 }, { "CGC", 6 }, { "OA1", 8 }, { "OA2", 8 }, { "OB1", 8 }, { "OB2", 8 }, { "OG1", 8 }, { "OG2", 8 }, { "OHB", 8 }, { "HA1", 1 }, { "HA2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HG2", 1 } }, { { "CAC", "CA" }, { "CAC", "OA2" }, { "CA", "CB" }, { "CA", "HA1" }, { "CA", "HA2" }, { "CB", "CBC" }, { "CB", "CG" }, { "CB", "OHB" }, { "CBC", "OB2" }, { "CG", "CGC" }, { "CG", "HG1" }, { "CG", "HG2" }, { "CGC", "OG2" }, { "OHB", "HOB" } }, { { "CAC", "OA1" }, { "CBC", "OB1" }, { "CGC", "OG1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:192: warning: Member swap(UnitCell &lhs, UnitCell &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h:7: warning: Member element_symbols[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h:20: warning: Member element_names[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h:47: warning: Member element_masses[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h:69: warning: Member element_VDW[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h:112: warning: Member element_covalent[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h:153: warning: Member element_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuecolors.h:7: warning: Member chain_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuecolors.h:25: warning: Member amino_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuecolors.h:41: warning: Member shapely_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuecolors.h:57: warning: Member secondary_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2431: warning: Member residueDict (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:16: warning: Member space_group_international_number[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:55: warning: Member space_group_schoenflies[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:134: warning: Member space_group_hall_symbol[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:666: warning: Member space_group_international[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:1198: warning: Member space_group_international_full[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:1730: warning: Member space_group_international_short[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:1822: warning: Member space_group_setting[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:1884: warning: Member space_group_transforms[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:31: warning: Member operator*() (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:35: warning: Member begin() (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:37: warning: Member end() const (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:41: warning: Member operator++() (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:43: warning: Member operator!=(const AngleIterator &other) (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:96: warning: Member Container (typedef) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:99: warning: Member ValueType (typedef) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:119: warning: Member Array(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:124: warning: Member Array(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:156: warning: Member data() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:158: warning: Member constData() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:160: warning: Member size() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:162: warning: Member max_size() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:164: warning: Member empty() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:166: warning: Member capacity() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:168: warning: Member reserve(const size_t &sz) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:174: warning: Member resize(const size_t &sz, const ValueType &t=ValueType()) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:180: warning: Member clear() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:186: warning: Member begin() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:188: warning: Member end() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:190: warning: Member begin() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:196: warning: Member end() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:202: warning: Member rbegin() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:204: warning: Member rend() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:206: warning: Member rbegin() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:212: warning: Member rend() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:218: warning: Member front() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:224: warning: Member front() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:226: warning: Member back() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:232: warning: Member back() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:235: warning: Member assign(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:241: warning: Member assign(size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:247: warning: Member push_back(const ValueType &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:253: warning: Member pop_back() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:259: warning: Member insert(iterator position, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:265: warning: Member insert(iterator position, size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:272: warning: Member insert(iterator position, InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:278: warning: Member erase(iterator position) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:284: warning: Member erase(iterator first, iterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:290: warning: Member operator[](const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:295: warning: Member operator[](const std::size_t &idx) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:301: warning: Member at(const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:304: warning: Member operator=(const std::vector< OtherT > &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:312: warning: Member operator=(const Array< OtherT > &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:319: warning: Member operator=(const Array &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:328: warning: Member swap(Array< ValueType > &other) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:351: warning: Member d (variable) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:71: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:72: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:62: warning: Member Holder(const ValueType &value) (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:64: warning: Member type() const (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:66: warning: Member clone() const (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:68: warning: Member m_content (variable) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:53: warning: Member type() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:55: warning: Member clone() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:742: warning: Member Atom(Molecule *m, Index i) (function) of class Avogadro::Core::Atom is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:117: warning: Member atomicNumber() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:128: warning: Member position2d() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:136: warning: Member position3d() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:144: warning: Member hybridization() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:152: warning: Member formalCharge() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:160: warning: Member color() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:168: warning: Member layer() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:44: warning: explicit link request to 'AtomType' could not be resolved /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::AtomTyper is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::AtomTyper is not documented. Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkglwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/docs/mainpage.dox... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/docs/mainpage.dox... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Distributing member group documentation. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound vtkAvogadroActor... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for namespace Avogadro Generating docs for compound Avogadro::Frustrum... Generating docs for compound Avogadro::TypeTraits... Generating docs for compound Avogadro::TypeTraits< char >... Generating docs for compound Avogadro::TypeTraits< double >... Generating docs for compound Avogadro::TypeTraits< float >... Generating docs for compound Avogadro::TypeTraits< int >... Generating docs for compound Avogadro::TypeTraits< short >... Generating docs for compound Avogadro::TypeTraits< unsigned char >... Generating docs for compound Avogadro::TypeTraits< unsigned int >... Generating docs for compound Avogadro::TypeTraits< unsigned short >... Generating docs for compound Avogadro::Calc::ChargeManager... Generating docs for compound Avogadro::Calc::ChargeModel... Generating docs for compound Avogadro::Calc::DefaultModel... Generating docs for namespace Avogadro::Core Generating docs for compound Avogadro::Core::AngleIterator... Generating docs for compound Avogadro::Core::Array... Generating docs for compound Avogadro::Core::ArraySet... Generating docs for nested compound Avogadro::Core::ArraySet::Holder... Generating docs for nested compound Avogadro::Core::ArraySet::PlaceHolder... Generating docs for compound Avogadro::Core::Atom... Generating docs for compound Avogadro::Core::AtomTemplate... Generating docs for compound Avogadro::Core::AtomTyper... Generating docs for/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/basisset.h:80: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:749: warning: Member Bond(Molecule *m, Index i) (function) of class Avogadro::Core::Bond is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:93: warning: Member atom2() const (function) of class BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:111: warning: Member order() const (function) of class BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:20: warning: explicit link request to 'BondType' could not be resolved /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/color3f.h:84: warning: Member m_data[3] (variable) of class Avogadro::Core::Color3f is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:40: warning: Member setMolecule(const Molecule *mol) (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:41: warning: Member molecule() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:82: warning: Member specification() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:92: warning: Member resize(Index _size) (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:93: warning: Member size() const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:94: warning: Member coordinates() (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:95: warning: Member coordinates() const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:100: warning: Member operator[](Index _index) (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:101: warning: Member operator[](Index _index) const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:71: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:72: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:98: warning: Found unknown command '\index' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:38: warning: Member Options (typedef) of class Avogadro::Core::CrystalTools is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:48: warning: The following parameter of Avogadro::Core::CrystalTools::rotateToStandardOrientation(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:63: warning: The following parameters of Avogadro::Core::CrystalTools::setVolume(Molecule &molecule, Real newVolume, Options opts=None) are not documented: parameter 'molecule' parameter 'newVolume' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:73: warning: The following parameter of Avogadro::Core::CrystalTools::niggliReduce(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:95: warning: The following parameter of Avogadro::Core::CrystalTools::buildSupercell(Molecule &molecule, unsigned int a, unsigned int b, unsigned int c) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:107: warning: The following parameters of Avogadro::Core::CrystalTools::setCellMatrix(Molecule &molecule, const Matrix3 &newCellColMatrix, Options opt=None) are not documented: parameter 'molecule' parameter 'newCellColMatrix' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:119: warning: Member data() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:222: warning: Member setName(const std::string &name_) (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:223: warning: Member name() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:225: warning: Member setCubeType(Type type) (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:226: warning: Member cubeType() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:234: warning: Member m_data (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:235: warning: Member m_min (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:235: warning: Member m_max (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:235: warning: Member m_spacing (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:236: warning: Member m_points (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:237: warning: Member m_minValue (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:237: warning: Member m_maxValue (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:238: warning: Member m_name (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:239: warning: Member m_cubeType (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:240: warning: Member m_lock (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:189: warning: The following parameter of Avogadro::Core::Cube::setValue(unsigned int i, float value) is not documented: parameter 'value' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:31: warning: Member operator*() (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:35: warning: Member begin() (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:37: warning: Member end() const (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:41: warning: Member operator++() (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:43: warning: Member operator!=(const DihedralIterator &other) (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:220: warning: Member symmetry() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:221: warning: Member atomIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:222: warning: Member atomIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:223: warning: Member moIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:224: warning: Member moIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:225: warning: Member gtoIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:226: warning: Member gtoIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:227: warning: Member cIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:228: warning: Member cIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:229: warning: Member gtoA() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:230: warning: Member gtoA() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:231: warning: Member gtoC() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:232: warning: Member gtoC() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:233: warning: Member gtoCN() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:239: warning: Member moMatrix(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:247: warning: Member moMatrix(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:255: warning: Member moEnergy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:263: warning: Member moEnergy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:271: warning: Member moOccupancy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:279: warning: Member moOccupancy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:287: warning: Member moNumber(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:295: warning: Member moNumber(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:303: warning: Member densityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:304: warning: Member spinDensityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/basisset.h:80: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussiansettools.h:33: warning: Member GaussianSetTools(Molecule *mol=nullptr) (function) of class Avogadro::Core::GaussianSetTools is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h:29: warning: Member addAtom(size_t layer) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h:30: warning: Member addAtom(size_t layer, Index atom) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h:31: warning: Member addAtomToActiveLayer(Index atom) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h:32: warning: Member removeAtom(Index atom) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h:33: warning: Member removeLayer(size_t layer) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:32: warning: Member LayerData(std::string save="") (function) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:47: warning: Member boolToString(bool b) (function) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:48: warning: Member stringToBool(std::string b) (function) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:49: warning: Member m_save (variable) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:113: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:114: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:193: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:194: warning: Member layer(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:254: warning: Member label(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:255: warning: Member setLabel(const Core::Array< std::string > &label) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:256: warning: Member setLabel(Index atomId, const std::string &label) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:289: warning: Member addAtom(unsigned char atomicNumber, Vector3 position3d) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:387: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:388: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:390: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:392: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:400: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:401: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:403: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:405: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:412: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:467: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:488: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:489: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:490: warning: Member vibrationIRIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:491: warning: Member setVibrationIRIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:492: warning: Member vibrationRamanIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:493: warning: Member setVibrationRamanIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:494: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:495: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:518: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:519: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:520: warning: Member coordinate3d(int index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:521: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:527: warning: Member timeStep(int index, bool &status) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:558: warning: Member addResidue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:559: warning: Member addResidue(Residue &residue) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:560: warning: Member residue(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:562: warning: Member residues() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:563: warning: Member residues() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:675: warning: Member getAtomBonds(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:676: warning: Member getAtomOrders(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:680: warning: Member removeBonds(Index atom) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:682: warning: Member addBonds(const Array< std::pair< Index, Index > > &bonds, const Array< unsigned char > &orders) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:686: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:688: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:690: warning: Member getAtomsAtLayer(size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:692: warning: Member layer() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:693: warning: Member layer() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:678: warning: Member makeBondPair(const Index &a, const Index &b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:696: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:698: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:701: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:702: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:703: warning: Member m_label (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:705: warning: Member m_timesteps (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:706: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:707: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:708: warning: Member m_forceVectors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:709: warning: Member m_colors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:711: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:712: warning: Member m_vibrationIRIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:713: warning: Member m_vibrationRamanIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:714: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:717: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:719: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:720: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:722: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:723: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:724: warning: Member m_residues (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:727: warning: Member m_hallNumber (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:68: warning: Member MoleculeInfo(const Molecule *m) (function) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:74: warning: Member clear() (function) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:60: warning: Member mol (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:61: warning: Member visible (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:62: warning: Member locked (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:63: warning: Member enable (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:64: warning: Member settings (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:65: warning: Member layer (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:66: warning: Member loaded (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/nameatomtyper.h:26: warning: Member NameAtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::NameAtomTyper is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h:58: warning: Member m_maxDistance (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h:59: warning: Member m_binCount (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h:60: warning: Member m_bins (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h:61: warning: Member m_minPos (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h:62: warning: Member m_maxPos (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:37: warning: Member SecondaryStructure (enumeration) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:52: warning: Member Residue(std::string &name) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:53: warning: Member Residue(std::string &name, Index &number) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:54: warning: Member Residue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:56: warning: Member Residue(const Residue &other) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:58: warning: Member operator=(Residue other) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:62: warning: Member residueName() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:64: warning: Member setResidueName(std::string &name) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:66: warning: Member residueId() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:68: warning: Member setResidueId(Index &number) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:70: warning: Member chainId() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:72: warning: Member setChainId(const char &id) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:74: warning: Member secondaryStructure() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:79: warning: Member setSecondaryStructure(const SecondaryStructure &ss) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:117: warning: Member hasAtomByIndex(Index index) const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:135: warning: Member m_residueName (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:136: warning: Member m_residueId (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:137: warning: Member m_chainId (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:138: warning: Member m_atomNameMap (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:139: warning: Member m_heterogen (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:140: warning: Member m_color (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:141: warning: Member m_customColorSet (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:142: warning: Member m_secondaryStructure (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:21: warning: Member ResidueData(std::string name, std::map< std::string, int > atomNames, std::vector< std::pair< std::string, std::string > > singleBonds, std::vector< std::pair< std::string, std::string > > doubleBonds) (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:31: warning: Member ResidueData(const ResidueData &other) (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:39: warning: Member operator=(ResidueData other) (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:46: warning: Member residueAtoms() (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:48: warning: Member residueSingleBonds() (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:53: warning: Member residueDoubleBonds() (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h:23: warning: Member RingPerceiver(const Molecule *m=nullptr) (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h:27: warning: Member setMolecule(const Molecule *m) (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h:28: warning: Member molecule() const (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h:31: warning: Member rings() (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.h:38: warning: Member SecondaryStructureAssigner(Molecule *m=nullptr) (function) of class Avogadro::Core::SecondaryStructureAssigner is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.h:41: warning: Member assign(Molecule *mol) (function) of class Avogadro::Core::SecondaryStructureAssigner is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:137: warning: Member slaterTypes() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:138: warning: Member zetas() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:139: warning: Member factors() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:140: warning: Member PQNs() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:141: warning: Member normalizedMatrix() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:142: warning: Member densityMatrix() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:144: warning: Member outputAll() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/basisset.h:80: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slatersettools.h:31: warning: Member SlaterSetTools(Molecule *mol=nullptr) (function) of class Avogadro::Core::SlaterSetTools is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/symbolatomtyper.h:26: warning: Member SymbolAtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::SymbolAtomTyper is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:25: warning: Member UnitCell(Real a, Real b, Real c, Real alpha, Real beta, Real gamma) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:26: warning: Member UnitCell(const Vector3 &a, const Vector3 &b, const Vector3 &c) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:27: warning: Member UnitCell(const Matrix3 &cellMatrix) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:28: warning: Member UnitCell(const UnitCell &other) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:30: warning: Member operator=(UnitCell other) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:87: warning: Member setFractionalMatrix(const Matrix3 &m) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant.h:29: warning: Member Type (enumeration) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant.h:125: warning: Member operator=(const Variant &variant) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:62: warning: Member setValue(bool v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:73: warning: Member setValue(char v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:84: warning: Member setValue(short v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:95: warning: Member setValue(int v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:106: warning: Member setValue(long v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:117: warning: Member setValue(float v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:128: warning: Member setValue(double v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:139: warning: Member setValue(std::string string) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:150: warning: Member setValue(const char *string) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:156: warning: Member setValue(void *pointer) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:167: warning: Member setValue(MatrixX matrix) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:184: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:195: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:206: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:217: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:234: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:247: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:262: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:277: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:286: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:304: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:313: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variantmap.h:29: warning: Member iterator (typedef) of class Avogadro::Core::VariantMap is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variantmap.h:30: warning: Member const_iterator (typedef) of class Avogadro::Core::VariantMap is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:26: warning: Member Parent (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:29: warning: Member value_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:30: warning: Member allocator_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:31: warning: Member reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:32: warning: Member const_reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:33: warning: Member pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:34: warning: Member const_pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:35: warning: Member iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:36: warning: Member const_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:37: warning: Member reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:38: warning: Member const_reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:39: warning: Member difference_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:40: warning: Member size_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:44: warning: Member ArrayRefContainer(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:49: warning: Member ArrayRefContainer(const ArrayRefContainer &other) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:53: warning: Member ArrayRefContainer(InputIterator first, InputIterator last) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:58: warning: Member reref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:62: warning: Member deref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:69: warning: Member ref() const (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:72: warning: Member m_ref (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:74: warning: Member data (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h:39: warning: Member operator()(const std::string &s1, const std::string &s2) const noexcept (function) of struct Avogadro::Io::CaseInsensitiveComparator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h:34: warning: Member operator()(const unsigned char &c1, const unsigned char &c2) const (function) of struct Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.h:56: warning: Member perceiveSubstitutedCations(Core::Molecule &molecule) (function) of class Avogadro::Io::PdbFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h:82: warning: Member BatchJob(const QString &scriptFilePath, QObject *parent=nullptr) (function) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h:62: warning: Member InvalidBatchId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h:68: warning: Member InvalidRequestId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h:75: warning: Member InvalidServerId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h:38: warning: Member Client(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h:227: warning: Member MessageType (enumeration) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h:238: warning: Member m_jsonRpcClient (variable) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h:239: warning: Member m_requests (variable) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h:126: warning: Unsupported xml/html tag found /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h:457: warning: Member InputGenerator(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h:452: warning: The following parameter of Avogadro::MoleQueue::InputGenerator::InputGenerator(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.h:37: warning: Member InputGeneratorDialog(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.h:38: warning: Member InputGeneratorDialog(const QString &scriptFileName, QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented. compound Avogadro::Core::AtomUtilities... Generating docs for compound Avogadro::Core::AvoSpglib... Generating docs for compound Avogadro::Core::BasisSet... Generating docs for compound Avogadro::Core::Bond... Generating docs for compound Avogadro::Core::BondTemplate... Generating docs for compound Avogadro::Core::Color3f... Generating docs for compound Avogadro::Core::CoordinateBlockGenerator... Generating docs for compound Avogadro::Core::CoordinateSet... Generating docs for compound Avogadro::Core::CrystalTools... Generating docs for compound Avogadro::Core::Cube... Generating docs for compound Avogadro::Core::DihedralIterator... Generating docs for compound Avogadro::Core::Elements... Generating docs for compound Avogadro::Core::GaussianSet... Generating docs for compound Avogadro::Core::GaussianSetTools... Generating docs for compound Avogadro::Core::Graph... Generating docs for compound Avogadro::Core::hBondRecord... Generating docs for compound Avogadro::Core::Layer... Generating docs for compound Avogadro::Core::LayerData... Generating docs for compound Avogadro::Core::LayerManager... Generating docs for compound Avogadro::Core::Mesh... Generating docs for compound Avogadro::Core::Molecule... Generating docs for compound Avogadro::Core::MoleculeDeserializer... Generating docs for compound Avogadro::Core::MoleculeInfo... Generating docs for compound Avogadro::Core::MoleculeSerializer... Generating docs for compound Avogadro::Core::Mutex... Generating docs for compound Avogadro::Core::NameAtomTyper... Generating docs for compound Avogadro::Core::NeighborPerceiver... Generating docs for compound Avogadro::Core::Residue... Generating docs for compound Avogadro::Core::ResidueData... Generating docs for compound Avogadro::Core::RingPerceiver... Generating docs for compound Avogadro::Core::SecondaryStructureAssigner... Generating docs for compound Avogadro::Core::SharedMutex... Generating docs for compound Avogadro::Core::SlaterSet... Generating docs for compound Avogadro::Core::SlaterSetTools... Generating docs for compound Avogadro::Core::SpaceGroups... Generating docs for compound Avogadro::Core::SymbolAtomTyper... Generating docs for compound Avogadro::Core::UnitCell... Generating docs for compound Avogadro::Core::Variant... Generating docs for compound Avogadro::Core::VariantMap... Generating docs for compound Avogadro::Core::internal::ArrayRefContainer... Generating docs for compound Avogadro::Io::CaseInsensitiveComparator... Generating docs for nested compound Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare... Generating docs for compound Avogadro::Io::CjsonFormat... Generating docs for compound Avogadro::Io::CmlFormat... Generating docs for compound Avogadro::Io::DcdFormat... Generating docs for compound Avogadro::Io::FileFormat... Generating docs for compound Avogadro::Io::FileFormatManager... Generating docs for compound Avogadro::Io::GromacsFormat... Generating docs for compound Avogadro::Io::Hdf5DataFormat... Generating docs for compound Avogadro::Io::LammpsDataFormat... Generating docs for compound Avogadro::Io::LammpsTrajectoryFormat... Generating docs for compound Avogadro::Io::MdlFormat... Generating docs for compound Avogadro::Io::MMTFFormat... Generating docs for compound Avogadro::Io::OutcarFormat... Generating docs for compound Avogadro::Io::PdbFormat... Generating docs for compound Avogadro::Io::PoscarFormat... Generating docs for compound Avogadro::Io::TrrFormat... Generating docs for compound Avogadro::Io::TurbomoleFormat... Generating docs for compound Avogadro::Io::XyzFormat... Generating docs for compound Avogadro::MoleQueue::BatchJob... Generating docs for compound Avogadro::MoleQueue::Client... Generating docs for compound Avogadro::MoleQueue::InputGenerator... Generating docs for compound Avogadro::MoleQueue::InputGeneratorDialog... Generating docs for compound Avogadro::MoleQueue::InputGeneratorWidget... Generating docs for compound Avogadro::MoleQueue::JobObject... Generating docs for compound Avogadro::MoleQueue::JsonRpcClient... Generating docs for compound Avogadro::MoleQueue/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:126: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:127: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:132: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jobobject.h:148: warning: Member m_value (variable) of class Avogadro::MoleQueue::JobObject is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h:48: warning: Member JsonRpcClient(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h:136: warning: Member m_packetCounter (variable) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h:137: warning: Member m_socket (variable) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.h:153: warning: Member done(int r) override (slot) of class Avogadro::MoleQueue::MoleQueueDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.h:34: warning: Member MoleQueueDialog(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuemanager.h:35: warning: Member MoleQueueManager(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:85: warning: Member data(const QModelIndex &idx, int role) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:86: warning: Member flags(const QModelIndex &idx=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:87: warning: Member headerData(int section, Qt::Orientation orientation, int role) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:89: warning: Member index(int row, int column, const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:91: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:92: warning: Member rowCount(const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:93: warning: Member columnCount(const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.h:33: warning: Member MoleQueueWidget(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.h:127: warning: Member batchMode() const (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h:37: warning: Member ColorButton(QWidget *parent=0) (function) of class Avogadro::QtGui::ColorButton is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h:38: warning: Member ColorButton(const QColor &initial, QWidget *parent=0) (function) of class Avogadro::QtGui::ColorButton is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h:51: warning: argument 'custom' of command @param is not found in the argument list of ColorButton::setDialogTitle(const QString title="") /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h:51: warning: The following parameter of Avogadro::QtGui::ColorButton::setDialogTitle(const QString title="") is not documented: parameter 'title' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:40: warning: Member splitVertical() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:41: warning: Member splitHorizontal() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:42: warning: Member closeView() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:30: warning: Member ContainerWidget(QWidget *parent=nullptr, Qt::WindowFlags f=0) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:33: warning: Member setViewWidget(QWidget *widget) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:34: warning: Member viewWidget() (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:36: warning: Member setActive(bool active) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:37: warning: Member isActive() const (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.h:31: warning: Member CustomElementDialog(Molecule &mol, QWidget *parent=nullptr) (function) of class Avogadro::QtGui::CustomElementDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:44: warning: Member ExtensionPlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:25: warning: Member Mode (enumeration) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:48: warning: Member setFileName(const QString &fname) (slot) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:45: warning: Member fileNameChanged(const QString &filename) (signal) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:31: warning: Member FileBrowseWidget(QWidget *theParent=nullptr) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:34: warning: Member fileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:36: warning: Member validFileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:38: warning: Member browseButton() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:39: warning: Member lineEdit() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:41: warning: Member setMode(Mode m) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:42: warning: Member mode() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.h:91: warning: Member highlightBlock(const QString &text) override (function) of class Avogadro::QtGui::GenericHighlighter is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.h:77: warning: The following parameters of Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const RWAtom &atom, int numberOfHydrogens, std::vector< Vector3 > &positions) are not documented: parameter 'atom' parameter 'numberOfHydrogens' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h:611: warning: Member finished() (signal) of class Avogadro::QtGui::InterfaceScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h:456: warning: Member InterfaceScript(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::InterfaceScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h:451: warning: The following parameter of Avogadro::QtGui::InterfaceScript::InterfaceScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:126: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:127: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:132: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:126: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:127: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:132: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:30: warning: Member ColumnType (enumeration) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:67: warning: Member updateRows() (slot) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:39: warning: Member LayerModel(QObject *p=0) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:41: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:42: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:43: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:45: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:47: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:49: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:51: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:54: warning: Member addItem() (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:55: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:56: warning: Member addMolecule(const Molecule *mol) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:57: warning: Member setActiveLayer(int index, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:58: warning: Member removeItem(int row, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:60: warning: Member items() const (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:62: warning: Member flipVisible(size_t row) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:63: warning: Member flipLocked(size_t row) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:64: warning: Member layerCount() const (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h:29: warning: Member removeLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h:30: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h:31: warning: Member setActiveLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:113: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:114: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:132: warning: Member duplicate(const Vector3i &c, const Vector3f &pos) (function) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:139: warning: Member m_iso (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:147: warning: Member m_normals (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:148: warning: Member m_indices (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:149: warning: Member m_progmin (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:150: warning: Member m_progmax (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:158: warning: Member a2iVertexOffset[8][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:159: warning: Member a2iEdgeConnection[12][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:160: warning: Member a2fEdgeDirection[12][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:161: warning: Member a2iTetrahedronEdgeConnection[6][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:162: warning: Member a2iTetrahedronsInACube[6][4] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:163: warning: Member aiTetrahedronEdgeFlags[16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:164: warning: Member a2iTetrahedronTriangles[16][7] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:165: warning: Member aiCubeEdgeFlags[256] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:166: warning: Member a2iTriangleConnectionTable[256][16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:52: warning: The following parameters of Avogadro::QtGui::MeshGenerator::MeshGenerator(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false, QObject *parent=nullptr) are not documented: parameter 'reverse' parameter 'parent' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:52: warning: found documented return type for Avogadro::QtGui::MeshGenerator::MeshGenerator that does not return anything /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:68: warning: The following parameter of Avogadro::QtGui::MeshGenerator::initialize(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false) is not documented: parameter 'reverse' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:125: warning: The following parameter of Avogadro::QtGui::MeshGenerator::offset(float val1, float val2) is not documented: parameter 'val2' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:48: warning: Member Molecule(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:96: warning: Member addAtom(unsigned char number, Vector3 position3d, Index uniqueId=MaxIndex) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:133: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:155: warning: Member addBonds(const Core::Array< std::pair< Index, Index > > &bonds, const Core::Array< unsigned char > &orders) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:228: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:230: warning: Member findAtomUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:231: warning: Member findBondUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:233: warning: Member undoMolecule() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:235: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:236: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:193: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:194: warning: Member layer(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:254: warning: Member label(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:255: warning: Member setLabel(const Core::Array< std::string > &label) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:256: warning: Member setLabel(Index atomId, const std::string &label) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:289: warning: Member addAtom(unsigned char atomicNumber, Vector3 position3d) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:387: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:388: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:390: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:392: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:400: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:401: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:403: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:405: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:412: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:467: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:488: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:489: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:490: warning: Member vibrationIRIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:491: warning: Member setVibrationIRIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:492: warning: Member vibrationRamanIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:493: warning: Member setVibrationRamanIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:494: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:495: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:518: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:519: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:520: warning: Member coordinate3d(int index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:521: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:527: warning: Member timeStep(int index, bool &status) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:558: warning: Member addResidue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:559: warning: Member addResidue(Residue &residue) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:560: warning: Member residue(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:562: warning: Member residues() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:563: warning: Member residues() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:675: warning: Member getAtomBonds(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:676: warning: Member getAtomOrders(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:680: warning: Member removeBonds(Index atom) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:682: warning: Member addBonds(const Array< std::pair< Index, Index > > &bonds, const Array< unsigned char > &orders) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:686: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:688: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:690: warning: Member getAtomsAtLayer(size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:692: warning: Member layer() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:693: warning: Member layer() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:678: warning: Member makeBondPair(const Index &a, const Index &b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:696: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:698: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:701: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:702: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:703: warning: Member m_label (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:705: warning: Member m_timesteps (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:706: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:707: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:708: warning: Member m_forceVectors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:709: warning: Member m_colors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:711: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:712: warning: Member m_vibrationIRIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:713: warning: Member m_vibrationRamanIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:714: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:717: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:719: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:720: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:722: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:723: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:724: warning: Member m_residues (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:727: warning: Member m_hallNumber (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:171: warning: argument 'a' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:171: warning: argument 'b' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:171: warning: The following parameters of Avogadro::QtGui::Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) are not documented: parameter 'atomId1' parameter 'atomId2' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:66: warning: Member setActiveMolecule(QObject *active) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:67: warning: Member addItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:68: warning: Member removeItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:69: warning: Member itemChanged() (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:63: warning: Member moleculeStateChanged(Avogadro::QtGui::Molecule *) (signal) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:40: warning: Member MoleculeModel(QObject *p=nullptr) (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:42: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:43: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:44: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:46: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:48: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:50: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:52: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:55: warning: Member clear() (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:57: warning: Member molecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:58: warning: Member activeMolecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:60: warning: Member activeMolecule() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:23: warning: Member m_molecule (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:24: warning: Member m_modelView (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:25: warning: Member m_dirty (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:26: warning: Member m_active (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:52: warning: Member splitHorizontal() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:53: warning: Member splitVertical() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:54: warning: Member createView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:55: warning: Member removeView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:49: warning: Member activeWidgetChanged(QWidget *widget) (signal) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:33: warning: Member MultiViewWidget(QWidget *parent=nullptr, Qt::WindowFlags f=0) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:36: warning: Member addWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:43: warning: Member setActiveWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:45: warning: Member setFactory(ViewFactory *factory) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:46: warning: Member setDefaultView(const QString &viewName) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentatom.h:24: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentatom.h:25: warning: Member AtomType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentbond.h:24: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentBond is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentbond.h:25: warning: Member BondType (typedef) of class Avogadro::QtGui::PersistentBond is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pluginlayermanager.h:26: warning: Member PluginLayerManager(const std::string &name="undef") (function) of class Avogadro::QtGui::PluginLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pluginlayermanager.h:32: warning: Member atomLocked(size_t atom) const (function) of class Avogadro::QtGui::PluginLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:113: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:114: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:124: warning: Member m_debug (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:125: warning: Member m_pythonInterpreter (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:126: warning: Member m_scriptFilePath (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:127: warning: Member m_errors (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:128: warning: Member m_process (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:31: warning: argument 'scriptFilePath_' of command @param is not found in the argument list of PythonScript::PythonScript(QObject *parent_=nullptr) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:674: warning: Member RWAtom(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWAtom is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:117: warning: Member atomicNumber() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:128: warning: Member position2d() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:136: warning: Member position3d() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:144: warning: Member hybridization() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:152: warning: Member formalCharge() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:160: warning: Member color() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:168: warning: Member layer() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:681: warning: Member RWBond(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWBond is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:93: warning: Member atom2() const (function) of class BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:111: warning: Member order() const (function) of class BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h:29: warning: Member removeLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h:30: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h:31: warning: Member setActiveLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:113: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:114: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:75: warning: Member molecule() (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:76: warning: Member molecule() const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:206: warning: Member label(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:207: warning: Member setLabel(Index atomId, const std::string &label, const QString &undoText=QStringLiteral("Change Atom Label")) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:240: warning: Member setAtomPosition2d(Index, const Vector2 &) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:241: warning: Member atomPosition2d(Index) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:242: warning: Member atomPositions2d() const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:297: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:298: warning: Member layer(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:655: warning: Member findAtomUniqueId(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:656: warning: Member findBondUniqueId(Index bondId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:663: warning: Member m_interactive (variable) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:665: warning: Member m_undoStack (variable) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:627: warning: The following parameter of Avogadro::QtGui::RWMolecule::setForceVector(Index atomId, const Vector3 &pos, const QString &undoText=QStringLiteral("Change Force Vectors")) is not documented: parameter 'atomId' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:29: warning: Member UndoCommand(RWMolecule &m) (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:34: warning: Member positions3d() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:35: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:36: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:38: warning: Member m_mol (variable) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:39: warning: Member m_molecule (variable) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:90: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:42: warning: Member ScenePlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:51: warning: Member processEditable(const RWMolecule &molecule, Rendering::GroupNode &node) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:80: warning: Member setupWidget() (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:87: warning: Member defaultBehavior() const (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:93: warning: Member m_layerManager (variable) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:55: warning: Member addItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:56: warning: Member removeItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:57: warning: Member itemChanged() (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:51: warning: Member pluginStateChanged(Avogadro::QtGui::ScenePlugin *) (signal) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:52: warning: Member pluginConfigChanged() (signal) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:30: warning: Member ScenePluginModel(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:32: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:33: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:34: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:36: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:38: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:40: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:42: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:45: warning: Member clear() (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:47: warning: Member scenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:48: warning: Member activeScenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.h:35: warning: Member ScriptLoader(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::ScriptLoader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.h:44: warning: Member queryProgramName(const QString &scriptFilePath, QString &displayName) (function) of class Avogadro::QtGui::ScriptLoader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h:111: warning: Member setEditMolecule(QtGui::RWMolecule *) (slot) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h:44: warning: Member ToolPlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h:140: warning: Member createInstance(QObject *parent=nullptr)=0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h:141: warning: Member identifier() const =0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:105: warning: Member rendererInvalid() (signal) of class Avogadro::QtOpenGL::GLWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:49: warning: Member GLWidget(QWidget *parent=nullptr) (function) of class Avogadro::QtOpenGL::GLWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:80: warning: Member GamessukOut(const QString &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:82: warning: Member GamessukOutNoQt(const std::string &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:83: warning: Member outputParsedData() (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussianfchk.h:52: warning: Member outputAll() (function) of class Avogadro::QuantumIO::GaussianFchk is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:37: warning: Member outputCoord() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:38: warning: Member outputBasis() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:51: warning: Member atomLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:52: warning: Member coordinates (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:54: warning: Member shellLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:55: warning: Member shells (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:58: warning: Member gtoIndicies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:62: warning: Member gtoExponents (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:63: warning: Member gtoCoefficients (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:66: warning: Member moEnergies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:68: warning: Member moVectors (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:72: warning: Member nShell (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:73: warning: Member nBasisFunctions (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:74: warning: Member nElectrons (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/mopacaux.h:23: warning: Member outputAll() (function) of class Avogadro::QuantumIO::MopacAux is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemlog.h:24: warning: Member outputAll() (function) of class Avogadro::QuantumIO::NWChemLog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.h:37: warning: Member AmbientOcclusionSphereGeometry(const AmbientOcclusionSphereGeometry &other) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.h:40: warning: Member operator=(AmbientOcclusionSphereGeometry) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.h:81: warning: Member spheres() const (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h:28: warning: Member ArrowGeometry(const ArrowGeometry &other) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h:31: warning: Member operator=(ArrowGeometry) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h:50: warning: Member drawLine(const Vector3f &start, const Vector3f &end, double lineWidth) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h:51: warning: Member drawCone(const Vector3f &base, const Vector3f &cap, double baseRadius, double) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h:25: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h:20: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BezierGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:94: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:97: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:99: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:101: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:69: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:81: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:83: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:85: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:92: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:18: warning: Member BSplineGeometry(bool flat) (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:69: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:81: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:83: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:21: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:94: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:97: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:99: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:101: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:85: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:92: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:31: warning: Member ObjectType (enumeration) of class Avogadro::Rendering::BufferObject is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:37: warning: Member BufferObject(ObjectType type=ArrayBuffer) (function) of class Avogadro::Rendering::BufferObject is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h:44: warning: Member Camera(const Camera &o) (function) of class Avogadro::Rendering::Camera is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h:45: warning: Member operator=(const Camera &o) (function) of class Avogadro::Rendering::Camera is not documented. ::MoleQueueDialog... Generating docs for compound Avogadro::MoleQueue::MoleQueueManager... Generating docs for compound Avogadro::MoleQueue::MoleQueueQueueListModel... Generating docs for compound Avogadro::MoleQueue::MoleQueueWidget... Generating docs for compound Avogadro::QtGui::BackgroundFileFormat... Generating docs for compound Avogadro::QtGui::ColorButton... Generating docs for compound Avogadro::QtGui::ContainerWidget... Generating docs for compound Avogadro::QtGui::CustomElementDialog... Generating docs for compound Avogadro::QtGui::ElementDetail... Generating docs for compound Avogadro::QtGui::ElementItem... Generating docs for compound Avogadro::QtGui::ElementTranslator... Generating docs for compound Avogadro::QtGui::ExtensionPlugin... Generating docs for compound Avogadro::QtGui::ExtensionPluginFactory... Generating docs for compound Avogadro::QtGui::FileBrowseWidget... Generating docs for compound Avogadro::QtGui::FileFormatDialog... Generating docs for compound Avogadro::QtGui::GenericHighlighter... Generating docs for nested compound Avogadro::QtGui::GenericHighlighter::Rule... Generating docs for compound Avogadro::QtGui::HydrogenTools... Generating docs for compound Avogadro::QtGui::InterfaceScript... Generating docs for compound Avogadro::QtGui::InterfaceWidget... Generating docs for compound Avogadro::QtGui::JsonWidget... Generating docs for compound Avogadro::QtGui::LayerModel... Generating docs for compound Avogadro::QtGui::MeshGenerator... Generating docs for compound Avogadro::QtGui::Molecule... Generating docs for compound Avogadro::QtGui::MoleculeModel... Generating docs for compound Avogadro::QtGui::MoleculeSystem... Generating docs for compound Avogadro::QtGui::MultiViewWidget... Generating docs for compound Avogadro::QtGui::PeriodicTableScene... Generating docs for compound Avogadro::QtGui::PeriodicTableView... Generating docs for compound Avogadro::QtGui::PersistentAtom... Generating docs for compound Avogadro::QtGui::PersistentBond... Generating docs for compound Avogadro::QtGui::PluginLayerManager... Generating docs for compound Avogadro::QtGui::PythonScript... Generating docs for compound Avogadro::QtGui::RWAtom... Generating docs for compound Avogadro::QtGui::RWBond... Generating docs for compound Avogadro::QtGui::RWLayerManager... Generating docs for compound Avogadro::QtGui::RWMolecule... Generating docs for nested compound Avogadro::QtGui::RWMolecule::UndoCommand... Generating docs for compound Avogadro::QtGui::ScenePlugin... Generating docs for compound Avogadro::QtGui::ScenePluginFactory... Generating docs for compound Avogadro::QtGui::ScenePluginModel... Generating docs for compound Avogadro::QtGui::ScriptLoader... Generating docs for compound Avogadro::QtGui::ToolPlugin... Generating docs for compound Avogadro::QtGui::ToolPluginFactory... Generating docs for compound Avogadro::QtGui::ViewFactory... Generating docs for compound Avogadro::QtOpenGL::ActiveObjects... Generating docs for compound Avogadro::QtOpenGL::GLWidget... Generating docs for compound Avogadro::QtOpenGL::QtTextRenderStrategy... Generating docs for compound Avogadro::QuantumIO::GamessukOut... Generating docs for compound Avogadro::QuantumIO::GAMESSUSOutput... Generating docs for compound Avogadro::QuantumIO::GaussianCube... Generating docs for compound Avogadro::QuantumIO::GaussianFchk... Generating docs for compound Avogadro::QuantumIO::GUKBasisSet... Generating docs for compound Avogadro::QuantumIO::MoldenFile... Generating docs for compound Avogadro::QuantumIO::MopacAux... Generating docs for compound Avogadro::QuantumIO::NWChemJson... Generating docs for compound Avogadro::QuantumIO::NWChemLog... Generating docs for compound Avogadro::Rendering::AmbientOcclusionSphereGeometry... Generating docs for compound Avogadro::Rendering::ArrowGeometry... Generating docs for compound Avogadro::Rendering::BezierGeometry... Generating docs for compound Avogadro::Rendering::BSplineGeometry... Generating docs for compound Avogadro::Rendering::BufferObject... Generating docs for compound Avogadro::Rendering::Camera... Generati/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:29: warning: Member Cartoon(float minRadius, float maxRadius) (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:32: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, size_t group, size_t id, Core::Residue::SecondaryStructure sec) (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:18: warning: Member BSplineGeometry(bool flat) (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:69: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:81: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:83: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:30: warning: Member ELIPSE_RATIO (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:85: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:37: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const override (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:41: warning: Member computeScale(size_t index, float t, float scale) const override (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:21: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:94: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:101: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:43: warning: Member m_type (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:44: warning: Member m_minRadius (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:44: warning: Member m_maxRadius (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:92: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:75: warning: Member ColorNormalVertex(const Vector3ub &c, const Vector3f &n, const Vector3f &v) (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:79: warning: Member colorOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:80: warning: Member normalOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:84: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:69: warning: Member color (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:70: warning: Member unusedAlign (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:71: warning: Member normal (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:72: warning: Member vertex (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:73: warning: Member padding[4] (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:48: warning: Member ColorTextureVertex(const Vector3f &p, const Vector3ub &c, const Vector2f &t, const Vector2f &t2=Vector2f::Zero()) (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:53: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:54: warning: Member colorOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:55: warning: Member textureCoordOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:60: warning: Member textureCoord2Offset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:42: warning: Member vertex (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:43: warning: Member color (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:44: warning: Member unusedAlign (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:45: warning: Member textureCoord (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:46: warning: Member textureCoord2 (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:69: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:81: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:83: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:85: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:94: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:95: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const =0 (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:97: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:99: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:101: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:92: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:123: warning: Member position() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:124: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:126: warning: Member direction() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:127: warning: Member setDirection(const Vector3f &dir) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:129: warning: Member length() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:130: warning: Member setLength(float l) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:132: warning: Member radius() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:133: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:18: warning: Member CylinderColor(const Vector3f &pos1, const Vector3f &pos2, float r, const Vector3ub &c, const Vector3ub &c2=Vector3ub::Zero()) (function) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:27: warning: Member end1 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:28: warning: Member end2 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:29: warning: Member radius (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:30: warning: Member color (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:31: warning: Member color2 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:45: warning: Member CylinderGeometry(const CylinderGeometry &other) (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:48: warning: Member operator=(CylinderGeometry) (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:127: warning: Member cylinders() const (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:38: warning: Member DashedLineGeometry(const DashedLineGeometry &other) (function) of class Avogadro::Rendering::DashedLineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:41: warning: Member operator=(DashedLineGeometry) (function) of class Avogadro::Rendering::DashedLineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:30: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:33: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:34: warning: Member colorOffset() (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:27: warning: Member vertex (variable) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:28: warning: Member color (variable) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h:29: warning: Member projection (variable) of struct Avogadro::Rendering::EigenData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h:30: warning: Member modelView (variable) of struct Avogadro::Rendering::EigenData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.h:70: warning: Member drawables() const (function) of class Avogadro::Rendering::GeometryNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.h:99: warning: Member m_drawables (variable) of class Avogadro::Rendering::GeometryNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:38: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:39: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:40: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:41: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:42: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:43: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:44: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:45: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:46: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:47: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:48: warning: Member visit(LineStripGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:80: warning: Member camera() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:84: warning: Member overlayCamera() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:88: warning: Member scene() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:30: warning: Member GLRenderVisitor(const Camera &camera=Camera(), const TextRenderStrategy *trs=nullptr) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:47: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:48: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:49: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:50: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:52: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:53: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:54: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:55: warning: Member visit(TextLabel2D &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:56: warning: Member visit(TextLabel3D &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:57: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:59: warning: Member setCamera(const Camera &camera_) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:60: warning: Member camera() const (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:28: warning: Member NodeType (enumeration) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:43: warning: Member GroupNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:96: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:109: warning: Member clear(NodeType type) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:110: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:54: warning: The following parameter of Avogadro::Rendering::GroupNode::addChild(Node *node, NodeType ui=NodeType::GEOMETRY) is not documented: parameter 'ui' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38: warning: Member NodeInfo(Node *n, NodeType u) (function) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39: warning: Member ui (variable) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40: warning: Member node (variable) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:27: warning: Member operator==(const Identifier &other) const (function) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:33: warning: Member operator!=(const Identifier &other) const (function) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:35: warning: Member isValid() const (function) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:37: warning: Member molecule (variable) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:38: warning: Member type (variable) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:39: warning: Member index (variable) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41: warning: Member Line(float r) (function) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:49: warning: Member add(Point *point) (function) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:54: warning: Member points (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55: warning: Member dirty (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56: warning: Member flat (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57: warning: Member radius (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:58: warning: Member vbo (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:59: warning: Member ibo (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:60: warning: Member order (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:61: warning: Member numberOfVertices (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:62: warning: Member numberOfIndices (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:41: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:44: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:38: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:64: warning: argument 'color' of command @param is not found in the argument list of LineStripGeometry::addLineStrip(const Core::Array< Vector3f > &vertices, float lineWidth) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:30: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:34: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:35: warning: Member colorOffset() (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:27: warning: Member vertex (variable) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:28: warning: Member color (variable) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:67: warning: argument 'colors' of command @param is not found in the argument list of MeshGeometry::addVertices(const Core::Array< Vector3f > &vertices, const Core::Array< Vector3f > &normals) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:32: warning: Member PackedVertex(const Vector4ub &c, const Vector3f &n, const Vector3f &v) (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:38: warning: Member colorOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:39: warning: Member normalOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:40: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:27: warning: Member color (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:28: warning: Member normal (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:29: warning: Member vertex (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:30: warning: Member padding[4] (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:30: warning: Member Point(const Vector3f &p, const Vector3ub &c, size_t i) (function) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:33: warning: Member pos (variable) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:34: warning: Member color (variable) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:35: warning: Member id (variable) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:29: warning: Member POVRayVisitor(const Camera &camera) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:32: warning: Member begin() (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:33: warning: Member end() (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:39: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:40: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:41: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:42: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:43: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:44: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:45: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:46: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:47: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:48: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:49: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:51: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:52: warning: Member camera() const (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:54: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:55: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:56: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:58: warning: Member operator==(const Identifier &other) const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:64: warning: Member operator!=(const Identifier &other) const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:69: warning: Member isValid() const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:71: warning: Member molecule (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:72: warning: Member type (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:73: warning: Member index (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:108: warning: Member rootNode() const (function) of class Avogadro::Rendering::Scene is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h:37: warning: Member Shader(Type type=Unknown, const std::string &source="") (function) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h:70: warning: Member m_type (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h:71: warning: Member m_handle (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h:72: warning: Member m_dirty (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h:74: warning: Member m_source (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h:75: warning: Member m_error (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:23: warning: Member vertexShader (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:24: warning: Member fragmentShader (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:25: warning: Member program (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:147: warning: Member setUniformValue(const std::string &name, const Eigen::Matrix4f &matrix) (function) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:156: warning: Member setAttributeArrayInternal(const std::string &name, void *buffer, Avogadro::Type type, int tupleSize, NormalizeOption normalize) (function) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:159: warning: Member m_handle (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:160: warning: Member m_vertexShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:161: warning: Member m_fragmentShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:163: warning: Member m_linked (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:165: warning: Member m_error (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:167: warning: Member m_attributes (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:169: warning: Member m_textureUnitBindings (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:170: warning: Member m_boundTextureUnits (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:95: warning: Member Sphere(const Vector3f &position_, float radius_, Primitive::Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:101: warning: Member position() const (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:102: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:104: warning: Member radius() const (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:105: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:19: warning: Member SphereColor(Vector3f centre, float r, Vector3ub c) (function) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:22: warning: Member center (variable) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:23: warning: Member radius (variable) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:24: warning: Member color (variable) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:43: warning: Member SphereGeometry(const SphereGeometry &other) (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:46: warning: Member operator=(SphereGeometry) (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:101: warning: Member spheres() const (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:60: warning: Member TextProperties(const TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:63: warning: Member operator=(TextProperties other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:64: warning: Member swap(TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:66: warning: Member operator==(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:67: warning: Member operator!=(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:76: warning: Member pixelHeight() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:83: warning: Member hAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:90: warning: Member vAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:102: warning: Member rotationDegreesCW() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:109: warning: Member fontFamily() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:116: warning: Member fontStyles() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:123: warning: Member bold() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:130: warning: Member italic() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:137: warning: Member underline() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h:113: warning: Member minFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h:114: warning: Member setMagFilter(FilterOption opt) (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h:115: warning: Member magFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h:157: warning: Member release() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h:159: warning: Member error() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.h:25: warning: Member TransformNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::TransformNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:43: warning: Member GroupNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:96: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:28: warning: Member NodeType (enumeration) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:109: warning: Member clear(NodeType type) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:110: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:47: warning: Member visit(GroupNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:48: warning: Member visit(GeometryNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:49: warning: Member visit(Drawable &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:50: warning: Member visit(SphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:52: warning: Member visit(CurveGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:53: warning: Member visit(CylinderGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:54: warning: Member visit(MeshGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:55: warning: Member visit(TextLabel2D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:56: warning: Member visit(TextLabel3D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:57: warning: Member visit(LineStripGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:29: warning: Member VRMLVisitor(const Camera &camera) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:32: warning: Member begin() (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:33: warning: Member end() (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:39: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:40: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:41: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:42: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:43: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:44: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:45: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:46: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:47: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:48: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:49: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:51: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:52: warning: Member camera() const (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:54: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:55: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:56: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkglwidget.h:47: warning: Member vtkGLWidget(QWidget *p=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::vtkGLWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:38: warning: Member Axis (enumeration) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:45: warning: Member LineStyle (enumeration) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:57: warning: Member setData(const std::vector< std::vector< double > > &data) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:58: warning: Member setWindowName(const char *windowName) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:59: warning: Member setXTitle(const char *xTitle) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:60: warning: Member setYTitle(const char *yTitle) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:64: warning: Member setLineLabels(const std::vector< std::string > &labels) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:68: warning: Member setLineColors(const std::vector< std::array< double, 4 > > &colors) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:72: warning: Member setLineStyles(const std::vector< LineStyle > &styles) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:77: warning: Member show() (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:80: warning: Member setCustomTickLabels(Axis axis, const std::vector< double > &customTickPositions, const std::vector< std::string > &customTickLabels) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:85: warning: Member setAxisLimits(Axis axis, double min, double max) (function) of class Avogadro::VTK::VtkPlot is not documented. ng docs for compound Avogadro::Rendering::Cartoon... Generating docs for compound Avogadro::Rendering::ColorNormalVertex... Generating docs for compound Avogadro::Rendering::ColorTextureVertex... Generating docs for compound Avogadro::Rendering::CurveGeometry... Generating docs for compound Avogadro::Rendering::Cylinder... Generating docs for compound Avogadro::Rendering::CylinderColor... Generating docs for compound Avogadro::Rendering::CylinderGeometry... Generating docs for compound Avogadro::Rendering::DashedLineGeometry... Generating docs for nested compound Avogadro::Rendering::DashedLineGeometry::PackedVertex... Generating docs for compound Avogadro::Rendering::Drawable... Generating docs for compound Avogadro::Rendering::EigenData... Generating docs for compound Avogadro::Rendering::GeometryNode... Generating docs for compound Avogadro::Rendering::GeometryVisitor... Generating docs for compound Avogadro::Rendering::GLRenderer... Generating docs for compound Avogadro::Rendering::GLRenderVisitor... Generating docs for compound Avogadro::Rendering::GroupNode... Generating docs for nested compound Avogadro::Rendering::GroupNode::NodeInfo... Generating docs for compound Avogadro::Rendering::Identifier... Generating docs for compound Avogadro::Rendering::Line... Generating docs for compound Avogadro::Rendering::LineStripGeometry... Generating docs for nested compound Avogadro::Rendering::LineStripGeometry::PackedVertex... Generating docs for compound Avogadro::Rendering::MeshGeometry... Generating docs for nested compound Avogadro::Rendering::MeshGeometry::PackedVertex... Generating docs for compound Avogadro::Rendering::Node... Generating docs for compound Avogadro::Rendering::Point... Generating docs for compound Avogadro::Rendering::POVRayVisitor... Generating docs for compound Avogadro::Rendering::Primitive... Generating docs for nested compound Avogadro::Rendering::Primitive::Identifier... Generating docs for compound Avogadro::Rendering::Scene... Generating docs for compound Avogadro::Rendering::Shader... Generating docs for compound Avogadro::Rendering::ShaderInfo... Generating docs for compound Avogadro::Rendering::ShaderProgram... Generating docs for compound Avogadro::Rendering::Sphere... Generating docs for compound Avogadro::Rendering::SphereColor... Generating docs for compound Avogadro::Rendering::SphereGeometry... Generating docs for compound Avogadro::Rendering::TextLabel2D... Generating docs for compound Avogadro::Rendering::TextLabel3D... Generating docs for compound Avogadro::Rendering::TextLabelBase... Generating docs for compound Avogadro::Rendering::TextProperties... Generating docs for compound Avogadro::Rendering::TextRenderStrategy... Generating docs for compound Avogadro::Rendering::Texture2D... Generating docs for compound Avogadro::Rendering::TransformNode... Generating docs for compound Avogadro::Rendering::Visitor... Generating docs for compound Avogadro::Rendering::VolumeGeometry... Generating docs for compound Avogadro::Rendering::VRMLVisitor... Generating docs for compound Avogadro::VTK::vtkGLWidget... Generating docs for compound Avogadro::VTK::VtkPlot... Generating graph info page... Generating directory documentation... Generating index page... Generating main page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class Avogadro::QtOpenGL::ActiveObjects Generating XML output for class Avogadro::Rendering::AmbientOcclusionSphereGeometry Generating XML output for class Avogadro::Core::AngleIterator Generating XML output for class Avogadro::Core::Array Generating XML output for class Avogadro::Core::interna/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:44: warning: explicit link request to 'AtomType' could not be resolved /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:20: warning: explicit link request to 'BondType' could not be resolved /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h:56: warning: argument 'format' of command @param is not found in the argument list of ChargeManager::registerModel(ChargeModel *model) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h:56: warning: The following parameter of Avogadro::Calc::ChargeManager::registerModel(ChargeModel *model) is not documented: parameter 'model' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h:96: warning: argument 'array' of command @param is not found in the argument list of ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h:96: warning: The following parameter of Avogadro::Calc::ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const is not documented: parameter 'points' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h:126: warning: Unsupported xml/html tag found /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h:51: warning: argument 'custom' of command @param is not found in the argument list of ColorButton::setDialogTitle(const QString title="") /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h:51: warning: The following parameter of Avogadro::QtGui::ColorButton::setDialogTitle(const QString title="") is not documented: parameter 'title' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:98: warning: Found unknown command '\index' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:48: warning: The following parameter of Avogadro::Core::CrystalTools::rotateToStandardOrientation(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:63: warning: The following parameters of Avogadro::Core::CrystalTools::setVolume(Molecule &molecule, Real newVolume, Options opts=None) are not documented: parameter 'molecule' parameter 'newVolume' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:73: warning: The following parameter of Avogadro::Core::CrystalTools::niggliReduce(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:95: warning: The following parameter of Avogadro::Core::CrystalTools::buildSupercell(Molecule &molecule, unsigned int a, unsigned int b, unsigned int c) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:107: warning: The following parameters of Avogadro::Core::CrystalTools::setCellMatrix(Molecule &molecule, const Matrix3 &newCellColMatrix, Options opt=None) are not documented: parameter 'molecule' parameter 'newCellColMatrix' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:189: warning: The following parameter of Avogadro::Core::Cube::setValue(unsigned int i, float value) is not documented: parameter 'value' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.h:144: warning: The following parameter of Avogadro::QtGui::FileFormatDialog::selectFileFormat(QWidget *parentWidget, const std::vector< const Io::FileFormat * > &ffs, const QString &caption, const QString &prompt, const QString &settingsKey=QString(), const QString &formatPrefix=QString()) is not documented: parameter 'formatPrefix' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h:319: warning: argument 'fmap' of command @param is not found in the argument list of FileFormatManager::filteredFormatFromFormatVector(FileFormat::Operations filter, const FormatIdVector &fvec) const /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h:319: warning: The following parameter of Avogadro::Io::FileFormatManager::filteredFormatFromFormatVector(FileFormat::Operations filter, const FormatIdVector &fvec) const is not documented: parameter 'fvec' l::ArrayRefContainer Generating XML output for class Avogadro::Core::ArraySet Generating XML output for class Avogadro::Rendering::ArrowGeometry Generating XML output for class Avogadro::Core::Atom Generating XML output for class Avogadro::Core::AtomTemplate Generating XML output for class Avogadro::Core::AtomTyper Generating XML output for class Avogadro::Core::AtomUtilities Generating XML output for class Avogadro::Core::AvoSpglib Generating XML output for class Avogadro::QtGui::BackgroundFileFormat Generating XML output for class Avogadro::Core::BasisSet Generating XML output for class Avogadro::MoleQueue::BatchJob Generating XML output for class Avogadro::Rendering::BezierGeometry Generating XML output for class Avogadro::Core::Bond Generating XML output for class Avogadro::Core::BondTemplate Generating XML output for class Avogadro::Rendering::BSplineGeometry Generating XML output for class Avogadro::Rendering::BufferObject Generating XML output for class Avogadro::Rendering::Camera Generating XML output for class Avogadro::Rendering::Cartoon Generating XML output for class Avogadro::Io::CaseInsensitiveComparator Generating XML output for class Avogadro::Calc::ChargeManager Generating XML output for class Avogadro::Calc::ChargeModel Generating XML output for class Avogadro::Io::CjsonFormat Generating XML output for class Avogadro::MoleQueue::Client Generating XML output for class Avogadro::Io::CmlFormat Generating XML output for class Avogadro::Core::Color3f Generating XML output for class Avogadro::QtGui::ColorButton Generating XML output for class Avogadro::Rendering::ColorNormalVertex Generating XML output for class Avogadro::Rendering::ColorTextureVertex Generating XML output for class Avogadro::QtGui::ContainerWidget Generating XML output for class Avogadro::Core::CoordinateBlockGenerator Generating XML output for class Avogadro::Core::CoordinateSet Generating XML output for class Avogadro::Core::CrystalTools Generating XML output for class Avogadro::Core::Cube Generating XML output for class Avogadro::Rendering::CurveGeometry Generating XML output for class Avogadro::QtGui::CustomElementDialog Generating XML output for class Avogadro::Rendering::Cylinder Generating XML output for class Avogadro::Rendering::CylinderColor Generating XML output for class Avogadro::Rendering::CylinderGeometry Generating XML output for class Avogadro::Rendering::DashedLineGeometry Generating XML output for class Avogadro::Io::DcdFormat Generating XML output for class Avogadro::Calc::DefaultModel Generating XML output for class Avogadro::Core::DihedralIterator Generating XML output for class Avogadro::Rendering::Drawable Generating XML output for class Avogadro::Rendering::EigenData Generating XML output for class Avogadro::QtGui::ElementDetail Generating XML output for class Avogadro::QtGui::ElementItem Generating XML output for class Avogadro::Core::Elements Generating XML output for class Avogadro::QtGui::ElementTranslator Generating XML output for class Avogadro::QtGui::ExtensionPlugin Generating XML output for class Avogadro::QtGui::ExtensionPluginFactory Generating XML output for class Avogadro::QtGui::FileBrowseWidget Generating XML output for class Avogadro::Io::FileFormat Generating XML output for class Avogadro::QtGui::FileFormatDialog Generating XML output for class Avogadro::Io::FileFormatManager Generating XML output for class Avogadro::Frustrum Generating XML output for class Avogadro::QuantumIO::GamessukOut Generating XML output for class Avogadro::QuantumIO::GAMESSUSOutput Generating XML output for class Avogadro::QuantumIO::GaussianCube Generating XML output for class Avogadro::QuantumIO::GaussianFchk Generating XML output for class Avogadro::Core::GaussianSet Generating XML output for class Avogadro::Core::GaussianSetTools Generating XML output for class Avogadro::QtGui::GenericHighlighter Generating XML output for class Avogadro::Rendering::GeometryNode Generating XML output for class Avogadro::Rendering::GeometryVisitor Generating XML output for class Avogadro::Rendering::GLRenderer Generating XML output for clas/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:54: warning: The following parameter of Avogadro::Rendering::GroupNode::addChild(Node *node, NodeType ui=NodeType::GEOMETRY) is not documented: parameter 'ui' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:299: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.h:77: warning: The following parameters of Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const RWAtom &atom, int numberOfHydrogens, std::vector< Vector3 > &positions) are not documented: parameter 'atom' parameter 'numberOfHydrogens' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h:452: warning: The following parameter of Avogadro::MoleQueue::InputGenerator::InputGenerator(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h:451: warning: The following parameter of Avogadro::QtGui::InterfaceScript::InterfaceScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:64: warning: argument 'color' of command @param is not found in the argument list of LineStripGeometry::addLineStrip(const Core::Array< Vector3f > &vertices, float lineWidth) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:52: warning: The following parameters of Avogadro::QtGui::MeshGenerator::MeshGenerator(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false, QObject *parent=nullptr) are not documented: parameter 'reverse' parameter 'parent' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:68: warning: The following parameter of Avogadro::QtGui::MeshGenerator::initialize(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false) is not documented: parameter 'reverse' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:125: warning: The following parameter of Avogadro::QtGui::MeshGenerator::offset(float val1, float val2) is not documented: parameter 'val2' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:67: warning: argument 'colors' of command @param is not found in the argument list of MeshGeometry::addVertices(const Core::Array< Vector3f > &vertices, const Core::Array< Vector3f > &normals) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:171: warning: argument 'a' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:171: warning: argument 'b' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:171: warning: The following parameters of Avogadro::QtGui::Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) are not documented: parameter 'atomId1' parameter 'atomId2' s Avogadro::Rendering::GLRenderVisitor Generating XML output for class Avogadro::QtOpenGL::GLWidget Generating XML output for class Avogadro::Core::Graph Generating XML output for class Avogadro::Io::GromacsFormat Generating XML output for class Avogadro::Rendering::GroupNode Generating XML output for class Avogadro::QuantumIO::GUKBasisSet Generating XML output for class Avogadro::Core::hBondRecord Generating XML output for class Avogadro::Io::Hdf5DataFormat Generating XML output for class Avogadro::Core::ArraySet::Holder Generating XML output for class Avogadro::QtGui::HydrogenTools Generating XML output for class Avogadro::Rendering::Identifier Generating XML output for class Avogadro::Rendering::Primitive::Identifier Generating XML output for class Avogadro::MoleQueue::InputGenerator Generating XML output for class Avogadro::MoleQueue::InputGeneratorDialog Generating XML output for class Avogadro::MoleQueue::InputGeneratorWidget Generating XML output for class Avogadro::QtGui::InterfaceScript Generating XML output for class Avogadro::QtGui::InterfaceWidget Generating XML output for class Avogadro::MoleQueue::JobObject Generating XML output for class Avogadro::MoleQueue::JsonRpcClient Generating XML output for class Avogadro::QtGui::JsonWidget Generating XML output for class Avogadro::Io::LammpsDataFormat Generating XML output for class Avogadro::Io::LammpsTrajectoryFormat Generating XML output for class Avogadro::Core::Layer Generating XML output for class Avogadro::Core::LayerData Generating XML output for class Avogadro::Core::LayerManager Generating XML output for class Avogadro::QtGui::LayerModel Generating XML output for class Avogadro::Rendering::Line Generating XML output for class Avogadro::Rendering::LineStripGeometry Generating XML output for class Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare Generating XML output for class Avogadro::Io::MdlFormat Generating XML output for class Avogadro::Core::Mesh Generating XML output for class Avogadro::QtGui::MeshGenerator Generating XML output for class Avogadro::Rendering::MeshGeometry Generating XML output for class Avogadro::Io::MMTFFormat Generating XML output for class Avogadro::QuantumIO::MoldenFile Generating XML output for class Avogadro::Core::Molecule Generating XML output for class Avogadro::QtGui::Molecule Generating XML output for class Avogadro::Core::MoleculeDeserializer Generating XML output for class Avogadro::Core::MoleculeInfo Generating XML output for class Avogadro::QtGui::MoleculeModel Generating XML output for class Avogadro::Core::MoleculeSerializer Generating XML output for class Avogadro::QtGui::MoleculeSystem Generating XML output for class Avogadro::MoleQueue::MoleQueueDialog Generating XML output for class Avogadro::MoleQueue::MoleQueueManager Generating XML output for class Avogadro::MoleQueue::MoleQueueQueueListModel Generating XML output for class Avogadro::MoleQueue::MoleQueueWidget Generating XML output for class Avogadro::QuantumIO::MopacAux Generating XML output for class Avogadro::QtGui::MultiViewWidget Generating XML output for class Avogadro::Core::Mutex Generating XML output for class Avogadro::Core::NameAtomTyper Generating XML output for class Avogadro::Core::NeighborPerceiver Generating XML output for class Avogadro::Rendering::Node Generating XML output for class Avogadro::Rendering::GroupNode::NodeInfo Generating XML output for class Avogadro::QuantumIO::NWChemJson Generating XML output for class Avogadro::QuantumIO::NWChemLog Generating XML output for class Avogadro::Io::OutcarFormat Generating XML output for class Avogadro::Rendering::DashedLineGeometry::PackedVertex Generating XML output for class Avogadro::Rendering::LineStripGeometry::PackedVertex Generating XML output for class Avogadro::Rendering::MeshGeometry::PackedVertex Generating XML output for class Avogadro::Io::PdbFormat Generating XML output for class Avogadro::QtGui::PeriodicTableScene Generating XML output for class Avogadro::QtGui::PeriodicTableView Generating XML output for class Avogadro::QtGui::PersistentAtom Generating XML output for class/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:31: warning: argument 'scriptFilePath_' of command @param is not found in the argument list of PythonScript::PythonScript(QObject *parent_=nullptr) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:627: warning: The following parameter of Avogadro::QtGui::RWMolecule::setForceVector(Index atomId, const Vector3 &pos, const QString &undoText=QStringLiteral("Change Force Vectors")) is not documented: parameter 'atomId' Avogadro::QtGui::PersistentBond Generating XML output for class Avogadro::Core::ArraySet::PlaceHolder Generating XML output for class Avogadro::QtGui::PluginLayerManager Generating XML output for class Avogadro::Rendering::Point Generating XML output for class Avogadro::Io::PoscarFormat Generating XML output for class Avogadro::Rendering::POVRayVisitor Generating XML output for class Avogadro::Rendering::Primitive Generating XML output for class Avogadro::QtGui::PythonScript Generating XML output for class Avogadro::QtOpenGL::QtTextRenderStrategy Generating XML output for class Avogadro::MoleQueue::BatchJob::Request Generating XML output for class Avogadro::Core::Residue Generating XML output for class Avogadro::Core::ResidueData Generating XML output for class Avogadro::Core::RingPerceiver Generating XML output for class Avogadro::QtGui::GenericHighlighter::Rule Generating XML output for class Avogadro::QtGui::RWAtom Generating XML output for class Avogadro::QtGui::RWBond Generating XML output for class Avogadro::QtGui::RWLayerManager Generating XML output for class Avogadro::QtGui::RWMolecule Generating XML output for class Avogadro::Rendering::Scene Generating XML output for class Avogadro::QtGui::ScenePlugin Generating XML output for class Avogadro::QtGui::ScenePluginFactory Generating XML output for class Avogadro::QtGui::ScenePluginModel Generating XML output for class Avogadro::QtGui::ScriptLoader Generating XML output for class Avogadro::Core::SecondaryStructureAssigner Generating XML output for class Avogadro::Rendering::Shader Generating XML output for class Avogadro::Rendering::ShaderInfo Generating XML output for class Avogadro::Rendering::ShaderProgram Generating XML output for class Avogadro::Core::SharedMutex Generating XML output for class Avogadro::Core::SlaterSet Generating XML output for class Avogadro::Core::SlaterSetTools Generating XML output for class Avogadro::Core::SpaceGroups Generating XML output for class Avogadro::Rendering::Sphere Generating XML output for class Avogadro::Rendering::SphereColor Generating XML output for class Avogadro::Rendering::SphereGeometry Generating XML output for class Avogadro::Core::SymbolAtomTyper Generating XML output for class Avogadro::Rendering::TextLabel2D Generating XML output for class Avogadro::Rendering::TextLabel3D Generating XML output for class Avogadro::Rendering::TextLabelBase Generating XML output for class Avogadro::Rendering::TextProperties Generating XML output for class Avogadro::Rendering::TextRenderStrategy Generating XML output for class Avogadro::Rendering::Texture2D Generating XML output for class Avogadro::QtGui::ToolPlugin Generating XML output for class Avogadro::QtGui::ToolPluginFactory Generating XML output for class Avogadro::Rendering::TransformNode Generating XML output for class Avogadro::Io::TrrFormat Generating XML output for class Avogadro::Io::TurbomoleFormat Generating XML output for class Avogadro::TypeTraits Generating XML output for class Avogadro::TypeTraits< char > Generating XML output for class Avogadro::TypeTraits< double > Generating XML output for class Avogadro::TypeTraits< float > Generating XML output for class Avogadro::TypeTraits< int > Generating XML output for class Avogadro::TypeTraits< short > Generating XML output for class Avogadro::TypeTraits< unsigned char > Generating XML output for class Avogadro::TypeTraits< unsigned int > Generating XML output for class Avogadro::TypeTraits< unsigned short > Generating XML output for class Avogadro::QtGui::RWMolecule::UndoCommand Generating XML output for class Avogadro::Core::UnitCell Generating XML output for class Avogadro::Core::Variant Generating XML output for class Avogadro::Core::VariantMap Generating XML output for class Avogadro::QtGui::ViewFactory Generating XML output for class Avogadro::Rendering::Visitor Generating XML output for class Avogadro::Rendering::VolumeGeometry Generating XML output for class Avogadro::Rendering::VRMLVisitor Generating XML output for class vtkAvogadroActor Generating XML output for class Avogadro::VTK::vtkGLWidget Generating X/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/matrixserialization.h:142: warning: The following parameter of Avogadro::ProtoCall::MatrixSerialization::deserialize(Avogadro::MatrixX &matrix, const void *data, size_t size) is not documented: parameter 'size' ML output for class Avogadro::VTK::VtkPlot Generating XML output for class Avogadro::Io::XyzFormat Generating XML output for namespace Avogadro Generating XML output for namespace Avogadro::Calc Generating XML output for namespace Avogadro::Core Generating XML output for namespace Avogadro::Core::internal Generating XML output for namespace Avogadro::Io Generating XML output for namespace Avogadro::MoleQueue Generating XML output for namespace Avogadro::MoleQueue::Ui Generating XML output for namespace Avogadro::ProtoCall Generating XML output for namespace Avogadro::ProtoCall::MatrixSerialization Generating XML output for namespace Avogadro::ProtoCall::Utils Generating XML output for namespace Avogadro::QtGui Generating XML output for namespace Avogadro::QtGui::@110 Generating XML output for namespace Avogadro::QtGui::Ui Generating XML output for namespace Avogadro::QtGui::Utilities Generating XML output for namespace Avogadro::QtOpenGL Generating XML output for namespace Avogadro::QtPlugins Generating XML output for namespace Avogadro::QuantumIO Generating XML output for namespace Avogadro::Rendering Generating XML output for namespace Avogadro::VTK Generating XML output for namespace google Generating XML output for namespace google::protobuf Generating XML output for namespace google::protobuf::io Generating XML output for namespace ProtoCall Generating XML output for namespace ProtoCall::Serialization Generating XML output for namespace QtPlugins Generating XML output for namespace std Generating XML output for file chargemanager.h Generating XML output for file chargemodel.h Generating XML output for file defaultmodel.h Generating XML output for file angleiterator.h Generating XML output for file angletools.h Generating XML output for file array.h Generating XML output for file atom.h Generating XML output for file atomtyper-inline.h Generating XML output for file atomtyper.h Generating XML output for file atomutilities.h Generating XML output for file avogadrocore.h Generating XML output for file avospglib.h Generating XML output for file basisset.h Generating XML output for file bond.h Generating XML output for file color3f.h Generating XML output for file coordinateblockgenerator.h Generating XML output for file coordinateset.h Generating XML output for file crystaltools.h Generating XML output for file cube.h Generating XML output for file dihedraliterator.h Generating XML output for file elementdata.h Generating XML output for file elements.h Generating XML output for file gaussianset.h Generating XML output for file gaussiansettools.h Generating XML output for file graph.h Generating XML output for file layer.h Generating XML output for file layermanager.h Generating XML output for file matrix.h Generating XML output for file mdlvalence_p.h Generating XML output for file mesh.h Generating XML output for file mutex.h Generating XML output for file nameatomtyper.h Generating XML output for file neighborperceiver.h Generating XML output for file residue.h Generating XML output for file residuecolors.h Generating XML output for file residuedata.h Generating XML output for file ringperceiver.h Generating XML output for file secondarystructure.h Generating XML output for file sharedmutex.h Generating XML output for file slaterset.h Generating XML output for file slatersettools.h Generating XML output for file spacegroupdata.h Generating XML output for file spacegroups.h Generating XML output for file symbolatomtyper.h Generating XML output for file types.h Generating XML output for file unitcell.h Generating XML output for file variant-inline.h Generating XML output for file variant.h Generating XML output for file variantmap.h Generating XML output for file vector.h Generating XML output for file cjsonformat.h Generating XML output for file cmlformat.h Generating XML output for file dcdformat.h Generating XML output for file fileformat.h Generating XML output for file fileformatmanager.h Generating XML output for file gromacsformat.h Generating XML output for file hdf5dataformat.h Generating XML output for file lammpsformat.h Generating XML output for file mdlformat.h Generating XML output for file mmtfformat.h Generating XML output for file pdbformat.h Generating XML output for file trrformat.h Generating XML output for file turbomoleformat.h Generating XML output for file vaspformat.h Generating XML output for file xyzformat.h Generating XML output for file batchjob.h Generating XML output for file client.h Generating XML output for file jobobject.h Generating XML output for file jsonrpcclient.h Generating XML output for file inputgenerator.h Generating XML output for file inputgeneratordialog.h Generating XML output for file inputgeneratorwidget.h Generating XML output for file molequeuedialog.h Generating XML output for file molequeuemanager.h Generating XML output for file molequeuequeuelistmodel.h Generating XML output for file molequeuewidget.h Generating XML output for file matrixserialization.h Generating XML output for file moleculedeserializer.h Generating XML output for file moleculeserializer.h Generating XML output for file utils.h Generating XML output for file backgroundfileformat.h Generating XML output for file colorbutton.h Generating XML output for file containerwidget.h Generating XML output for file customelementdialog.h Generating XML output for file elementdetail_p.h Generating XML output for file elementitem_p.h Generating XML output for file elementtranslator.h Generating XML output for file extensionplugin.h Generating XML output for file filebrowsewidget.h Generating XML output for file fileformatdialog.h Generating XML output for file generichighlighter.h Generating XML output for file hydrogentools.h Generating XML output for file interfacescript.h Generating XML output for file interfacewidget.h Generating XML output for file jsonwidget.h Generating XML output for file layermodel.h Generating XML output for file meshgenerator.h Generating XML output for file core/molecule.h Generating XML output for file qtgui/molecule.h Generating XML output for file moleculemodel.h Generating XML output for file multiviewwidget.h Generating XML output for file periodictablescene_p.h Generating XML output for file periodictableview.h Generating XML output for file persistentatom.h Generating XML output for file persistentbond.h Generating XML output for file pluginlayermanager.h Generating XML output for file pythonscript.h Generating XML output for file rwlayermanager.h Generating XML output for file rwmolecule.h Generating XML output for file rwmolecule_undo.h Generating XML output for file sceneplugin.h Generating XML output for file scenepluginmodel.h Generating XML output for file scriptloader.h Generating XML output for file toolplugin.h Generating XML output for file core/utilities.h Generating XML output for file qtgui/utilities.h Generating XML output for file viewfactory.h Generating XML output for file activeobjects.h Generating XML output for file glwidget.h Generating XML output for file qttextrenderstrategy.h Generating XML output for file gamessukout.h Generating XML output for file gamessus.h Generating XML output for file gaussiancube.h Generating XML output for file gaussianfchk.h Generating XML output for file molden.h Generating XML output for file mopacaux.h Generating XML output for file nwchemjson.h Generating XML output for file nwchemlog.h Generating XML output for file ambientocclusionspheregeometry.h Generating XML output for file arrowgeometry.h Generating XML output for file avogadrogl.h Generating XML output for file avogadrorendering.h Generating XML output for file beziergeometry.h Generating XML output for file bsplinegeometry.h Generating XML output for file bufferobject.h Generating XML output for file camera.h Generating XML output for file cartoongeometry.h Generating XML output for file curvegeometry.h Generating XML output for file cylindergeometry.h Generating XML output for file dashedlinegeometry.h Generating XML output for file drawable.h Generating XML output for file geometrynode.h Generating XML output for file geometryvisitor.h Generating XML output for file glrenderer.h Generating XML output for file glrendervisitor.h Generating XML output for file groupnode.h Generating XML output for file linestripgeometry.h Generating XML output for file meshgeometry.h Generating XML output for file node.h Generating XML output for file povrayvisitor.h Generating XML output for file primitive.h Generating XML output for file scene.h Generating XML output for file shader.h Generating XML output for file shaderprogram.h Generating XML output for file spheregeometry.h Generating XML output for file textlabel2d.h Generating XML output for file textlabel3d.h Generating XML output for file textlabelbase.h Generating XML output for file textproperties.h Generating XML output for file textrenderstrategy.h Generating XML output for file texture2d.h Generating XML output for file transformnode.h Generating XML output for file visitor.h Generating XML output for file volumegeometry.h Generating XML output for file vrmlvisitor.h Generating XML output for file vtkAvogadroActor.h Generating XML output for file vtkglwidget.h Generating XML output for file vtkplot.h Generating XML output for file mainpage.dox Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/docs/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/ Generating XML output for the main page Running plantuml with JAVA... type lookup cache used 8895/65536 hits=38471 misses=10481 symbol lookup cache used 7983/65536 hits=65596 misses=7983 finished... + popd ~/build/BUILD/avogadrolibs-1.97.0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.M2k28l + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x '!=' / ']' + rm -rf /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x ++ dirname /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd avogadrolibs-1.97.0 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x 'INSTALL=/usr/bin/install -p' -C build make: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/cmake -S/builddir/build/BUILD/avogadrolibs-1.97.0 -B/builddir/build/BUILD/avogadrolibs-1.97.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.97.0/build/CMakeFiles /builddir/build/BUILD/avogadrolibs-1.97.0/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr/CMakeFiles/bodrparse.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'utilities/bodr/CMakeFiles/bodrparse.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 0%] Built target bodrparse /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/encodefile/CMakeFiles/encodefile.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'utilities/encodefile/CMakeFiles/encodefile.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Built target encodefile /usr/bin/make -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata/CMakeFiles/resdataparse.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'utilities/resdata/CMakeFiles/resdataparse.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Built target resdataparse /usr/bin/make -f thirdparty/struct/CMakeFiles/struct.dir/build.make thirdparty/struct/CMakeFiles/struct.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/struct /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/struct/CMakeFiles/struct.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f thirdparty/struct/CMakeFiles/struct.dir/build.make thirdparty/struct/CMakeFiles/struct.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'thirdparty/struct/CMakeFiles/struct.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Built target struct /usr/bin/make -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi/CMakeFiles/gwavi.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'thirdparty/libgwavi/CMakeFiles/gwavi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Built target gwavi /usr/bin/make -f avogadro/core/CMakeFiles/AvogadroCore.dir/build.make avogadro/core/CMakeFiles/AvogadroCore.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core/CMakeFiles/AvogadroCore.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/core/CMakeFiles/AvogadroCore.dir/build.make avogadro/core/CMakeFiles/AvogadroCore.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/core/CMakeFiles/AvogadroCore.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Built target AvogadroCore /usr/bin/make -f avogadro/calc/CMakeFiles/AvogadroCalc.dir/build.make avogadro/calc/CMakeFiles/AvogadroCalc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc/CMakeFiles/AvogadroCalc.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/calc/CMakeFiles/AvogadroCalc.dir/build.make avogadro/calc/CMakeFiles/AvogadroCalc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/calc/CMakeFiles/AvogadroCalc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Built target AvogadroCalc /usr/bin/make -f avogadro/io/CMakeFiles/AvogadroIO.dir/build.make avogadro/io/CMakeFiles/AvogadroIO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io/CMakeFiles/AvogadroIO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/io/CMakeFiles/AvogadroIO.dir/build.make avogadro/io/CMakeFiles/AvogadroIO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/io/CMakeFiles/AvogadroIO.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 10%] Built target AvogadroIO /usr/bin/make -f avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Built target AvogadroQuantumIO /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command/CMakeFiles/avocjsontocml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/command/CMakeFiles/avocjsontocml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Built target avocjsontocml /usr/bin/make -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command/CMakeFiles/avobabel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/command/CMakeFiles/avobabel.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Built target avobabel /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command/CMakeFiles/qube.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/command/CMakeFiles/qube.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Built target qube /usr/bin/make -f avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build.make avogadro/rendering/CMakeFiles/AvogadroRendering.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/CMakeFiles/AvogadroRendering.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build.make avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Built target AvogadroRendering /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Automatic MOC for target AvogadroQtGui cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Built target AvogadroQtGui_autogen /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Built target AvogadroQtGui /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Automatic MOC for target AvogadroQtOpenGL cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Built target AvogadroQtOpenGL_autogen /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Built target AvogadroQtOpenGL /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Automatic MOC for target AvogadroMoleQueue cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Built target AvogadroMoleQueue_autogen /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Built target AvogadroMoleQueue /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Automatic MOC for target QTAIMScenePlugin cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Built target QTAIMScenePlugin_autogen /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Built target QTAIMScenePlugin /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Automatic MOC for target ThreeDMol cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Built target ThreeDMol_autogen /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target ThreeDMol /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 36%] Automatic MOC for target ApplyColors cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 36%] Built target ApplyColors_autogen /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 36%] Built target ApplyColors /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 37%] Automatic MOC for target BondCentric cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 37%] Built target BondCentric_autogen /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target BondCentric /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target Bonding cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target Bonding_autogen /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 39%] Built target Bonding /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target Cartoons cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target Cartoons_autogen /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target Cartoons /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target CoordinateEditor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target CoordinateEditor_autogen /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 42%] Built target CoordinateEditor /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Automatic MOC for target CopyPaste cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Built target CopyPaste_autogen /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Built target CopyPaste /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Automatic MOC for target Crystal cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Built target Crystal_autogen /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 45%] Built target Crystal /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Automatic MOC for target CrystalScene cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Built target CrystalScene_autogen /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Built target CrystalScene /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Automatic MOC for target CustomElements cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Built target CustomElements_autogen /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Built target CustomElements /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Automatic MOC for target Editor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Built target Editor_autogen /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Built target Editor /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Automatic MOC for target FetchPDB cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Built target FetchPDB_autogen /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Built target FetchPDB /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Automatic MOC for target Focus cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Built target Focus_autogen /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Built target Focus /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Automatic MOC for target Hydrogens cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Built target Hydrogens_autogen /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 51%] Built target Hydrogens /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 51%] Automatic MOC for target ImportPQR cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 51%] Built target ImportPQR_autogen /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Built target ImportPQR /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Automatic MOC for target NucleicInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Built target NucleicInput_autogen /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Built target NucleicInput /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Automatic MOC for target InsertFragment cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Built target InsertFragment_autogen /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Built target InsertFragment /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Automatic MOC for target Label cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Built target Label_autogen /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/Label.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Built target Label /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Automatic MOC for target LabelEditor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Built target LabelEditor_autogen /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Built target LabelEditor /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Automatic MOC for target LammpsInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Built target LammpsInput_autogen /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Built target LammpsInput /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Automatic MOC for target LineFormatInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Built target LineFormatInput_autogen /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Built target LineFormatInput /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Automatic MOC for target Manipulator cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Built target Manipulator_autogen /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Built target Manipulator /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Automatic MOC for target MeasureTool cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Built target MeasureTool_autogen /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Built target MeasureTool /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Automatic MOC for target MolecularProperties cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Built target MolecularProperties_autogen /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Built target MolecularProperties /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Automatic MOC for target MongoChem cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Built target MongoChem_autogen /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Built target MongoChem /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Automatic MOC for target Navigator cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Built target Navigator_autogen /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Built target Navigator /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Automatic MOC for target NetworkDatabases cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Built target NetworkDatabases_autogen /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Built target NetworkDatabases /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Automatic MOC for target OpenBabel cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Built target OpenBabel_autogen /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Built target OpenBabel /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Automatic MOC for target OpenMMInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Built target OpenMMInput_autogen /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Built target OpenMMInput /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Automatic MOC for target PlayerTool cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Built target PlayerTool_autogen /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Built target PlayerTool /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Automatic MOC for target PropertyTables cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Built target PropertyTables_autogen /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Built target PropertyTables /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Automatic MOC for target POVRay cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Built target POVRay_autogen /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Built target POVRay /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Automatic MOC for target ResetView cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Built target ResetView_autogen /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Built target ResetView /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Automatic MOC for target Select cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Built target Select_autogen /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/select/CMakeFiles/Select.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 74%] Built target Select /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Automatic MOC for target Selection cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Built target Selection_autogen /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Built target Selection /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Automatic MOC for target SpaceGroup cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Built target SpaceGroup_autogen /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Built target SpaceGroup /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Automatic MOC for target Surfaces cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Built target Surfaces_autogen /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Built target Surfaces /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Automatic MOC for target SVG cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Built target SVG_autogen /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 78%] Built target SVG /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 78%] Automatic MOC for target Spectra cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 78%] Built target Spectra_autogen /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Built target Spectra /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Automatic MOC for target VRML cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Built target VRML_autogen /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Built target VRML /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Automatic MOC for target apbs cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Built target apbs_autogen /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 82%] Built target apbs /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 82%] Automatic MOC for target Cp2kInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 82%] Built target Cp2kInput_autogen /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target Cp2kInput /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Automatic MOC for target GamessInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target GamessInput_autogen /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Built target GamessInput /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Automatic MOC for target commands cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Built target commands_autogen /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Built target commands /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Automatic MOC for target QuantumInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Built target QuantumInput_autogen /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Built target QuantumInput /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Automatic MOC for target ScriptFileFormats cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Built target ScriptFileFormats_autogen /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 86%] Built target ScriptFileFormats /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 86%] Automatic MOC for target ScriptCharges cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 86%] Built target ScriptCharges_autogen /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 87%] Built target ScriptCharges /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Automatic MOC for target PluginDownloader cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Built target PluginDownloader_autogen /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Built target PluginDownloader /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Automatic MOC for target BallStick cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Built target BallStick_autogen /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Built target BallStick /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Automatic MOC for target CloseContacts cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Built target CloseContacts_autogen /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Built target CloseContacts /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Automatic MOC for target Force cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Built target Force_autogen /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/force/CMakeFiles/Force.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Built target Force /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Automatic MOC for target Licorice cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Built target Licorice_autogen /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Built target Licorice /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Automatic MOC for target Meshes cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Built target Meshes_autogen /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Built target Meshes /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Automatic MOC for target NonCovalent cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Built target NonCovalent_autogen /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Built target NonCovalent /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Automatic MOC for target VanDerWaals cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Built target VanDerWaals_autogen /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 94%] Built target VanDerWaals /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 94%] Automatic MOC for target VanDerWaalsAO cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 94%] Built target VanDerWaalsAO_autogen /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Built target VanDerWaalsAO /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Automatic MOC for target Wireframe cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Built target Wireframe_autogen /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Built target Wireframe /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Automatic MOC for target OverlayAxes cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Built target OverlayAxes_autogen /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Built target OverlayAxes /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build 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avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Automatic MOC for target AvogadroQtPlugins cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Built target AvogadroQtPlugins_autogen /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 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CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/doc/AvogadroLibs/avogadrolibs/README.md -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/doc/AvogadroLibs/avogadrolibs/CONTRIBUTING.md -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/doc/AvogadroLibs/avogadrolibs/LICENSE -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/cmake/avogadrolibs/AvogadroLibsConfig.cmake -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/cmake/avogadrolibs/AvogadroLibsConfigVersion.cmake -- Installing: 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/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/io/avogadroioexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroIO.so.1.97.0 -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroIO.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroIO.so.1.97.0" to "/usr/lib64" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroIO.so -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/quantumio/gamessus.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/quantumio/gaussianfchk.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/quantumio/gaussiancube.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/quantumio/molden.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/quantumio/mopacaux.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/quantumio/nwchemjson.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/quantumio/nwchemlog.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/quantumio/avogadroquantumioexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroQuantumIO.so.1.97.0 -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroQuantumIO.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroQuantumIO.so.1.97.0" to "/usr/lib64" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroQuantumIO.so -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/rendering/arrowgeometry.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/rendering/avogadrogl.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/rendering/avogadrorendering.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/rendering/beziergeometry.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/rendering/bsplinegeometry.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/rendering/bufferobject.h -- Installing: 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/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/rendering/volumegeometry.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/rendering/vrmlvisitor.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/rendering/avogadrorenderingexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroRendering.so.1.97.0 -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroRendering.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroRendering.so.1.97.0" to "/usr/lib64" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroRendering.so -- Installing: 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/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/fileformatdialog.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/generichighlighter.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/hydrogentools.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/interfacescript.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/interfacewidget.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/jsonwidget.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/layermodel.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/rwlayermanager.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/meshgenerator.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/molecule.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/moleculemodel.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/multiviewwidget.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/periodictableview.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/persistentatom.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/persistentbond.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/pluginlayermanager.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/pythonscript.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/rwmolecule.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/sceneplugin.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/scenepluginmodel.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/scriptloader.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/toolplugin.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/utilities.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/viewfactory.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtgui/avogadroqtguiexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroQtGui.so.1.97.0 -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroQtGui.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroQtGui.so.1.97.0" to "/usr/lib64" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroQtGui.so -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtopengl/activeobjects.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtopengl/glwidget.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtopengl/qttextrenderstrategy.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/qtopengl/avogadroqtopenglexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroQtOpenGL.so.1.97.0 -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroQtOpenGL.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroQtOpenGL.so.1.97.0" to "/usr/lib64" -- Installing: 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/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/molequeue/molequeuequeuelistmodel.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/molequeue/molequeuewidget.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/include/avogadro2/avogadro/molequeue/avogadromolequeueexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroMoleQueue.so.1.97.0 -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroMoleQueue.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroMoleQueue.so.1.97.0" to "/usr/lib64" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroMoleQueue.so -- Installing: 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/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/Surfaces.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/SVG.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/Spectra.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/VRML.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/apbs.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/Cp2kInput.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/GamessInput.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/commands.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/QuantumInput.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/dalton.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/gaussian.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/molpro.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/mopac.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/nwchem.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/orca.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/psi4.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/pyscf.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/qchem.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/terachem.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/ScriptFileFormats.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/formatScripts/zyx.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/ScriptCharges.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/scripts/charges/xtb.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/scripts/charges/antechamber.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/PluginDownloader.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/BallStick.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/CloseContacts.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/Force.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/Licorice.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/Meshes.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/NonCovalent.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/VanDerWaals.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/VanDerWaalsAO.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/Wireframe.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/OverlayAxes.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/QTAIMExtension.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/staticplugins/QTAIMScenePlugin.a make: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' + cp -a /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/scripts /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/ + /usr/bin/python3 /usr/lib/rpm/redhat/pathfix.py -pn -i /usr/bin/python3 /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/charges/antechamber.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/charges/xtb.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/formatScripts/zyx.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/dalton.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/gaussian.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/molpro.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/mopac.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/nwchem.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/orca.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/psi4.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/pyscf.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/qchem.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/terachem.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/charges/antechamber.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/charges/xtb.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/formatScripts/zyx.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/dalton.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/gaussian.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/molpro.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/mopac.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/nwchem.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/orca.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/psi4.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/pyscf.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/qchem.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/terachem.py: no change + ln -sf /usr/lib64/python3.12/site-packages/avogadro2/scripts /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/avogadro2/scripts + chrpath -d /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroCalc.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroCore.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroIO.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroMoleQueue.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroQtGui.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroQtOpenGL.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroQtPlugins.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroQuantumIO.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/libAvogadroRendering.so + rm -rf /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/doc + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.97.0-8.fc40 --unique-debug-suffix -1.97.0-8.fc40.s390x --unique-debug-src-base avogadro2-libs-1.97.0-8.fc40.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/avogadrolibs-1.97.0 find-debuginfo: starting Extracting debug info from 9 files DWARF-compressing 9 files sepdebugcrcfix: Updated 9 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/avogadro2-libs-1.97.0-8.fc40.s390x 12408 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/charges/antechamber.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/charges/xtb.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/formatScripts/zyx.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/terachem.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/qchem.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/pyscf.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/psi4.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/orca.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/nwchem.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/mopac.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/molpro.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/gaussian.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/dalton.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/charges/antechamber.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/charges/xtb.py is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/lib64/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: avogadro2-libs-1.97.0-8.fc40.s390x Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.yKzcDz + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.97.0 + DOCDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/doc/avogadro2-libs + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/README.md /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi/README-libgwavi.md /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/README-avogenerators.md /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/doc/avogadro2-libs + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.TyRq6Y + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.97.0 + LICENSEDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/licenses/avogadro2-libs + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/licenses/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/LICENSE /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/licenses/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/molecules/LICENSE-molecules /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/licenses/avogadro2-libs + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/lib64/avogadro2/scripts/scripts -> /usr/lib64/python3.12/site-packages/avogadro2/scripts Provides: avogadro2-libs = 1.97.0-8.fc40 avogadro2-libs(s390-64) = 1.97.0-8.fc40 avogadro2-libs-static = 0:1.97.0-8.fc40 libAvogadroCalc.so.1()(64bit) libAvogadroCore.so.1()(64bit) libAvogadroIO.so.1()(64bit) libAvogadroMoleQueue.so.1()(64bit) libAvogadroQtGui.so.1()(64bit) libAvogadroQtOpenGL.so.1()(64bit) libAvogadroQtPlugins.so.1()(64bit) libAvogadroQuantumIO.so.1()(64bit) libAvogadroRendering.so.1()(64bit) python-avogadro2-libs = 1.97.0-8.fc40 python3.12-avogadro2-libs = 1.97.0-8.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld64.so.1()(64bit) ld64.so.1(GLIBC_2.3)(64bit) libAvogadroCalc.so.1()(64bit) libAvogadroCore.so.1()(64bit) libAvogadroIO.so.1()(64bit) libAvogadroMoleQueue.so.1()(64bit) libAvogadroQtGui.so.1()(64bit) libAvogadroQtOpenGL.so.1()(64bit) libAvogadroQuantumIO.so.1()(64bit) libAvogadroRendering.so.1()(64bit) libGL.so.1()(64bit) libGLEW.so.2.2()(64bit) libQt5Concurrent.so.5()(64bit) libQt5Concurrent.so.5(Qt_5)(64bit) libQt5Core.so.5()(64bit) libQt5Core.so.5(Qt_5)(64bit) libQt5Gui.so.5()(64bit) libQt5Gui.so.5(Qt_5)(64bit) libQt5Network.so.5()(64bit) libQt5Network.so.5(Qt_5)(64bit) libQt5Svg.so.5()(64bit) libQt5Svg.so.5(Qt_5)(64bit) libQt5Widgets.so.5()(64bit) libQt5Widgets.so.5(Qt_5)(64bit) libarchive.so.13()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libhdf5.so.200()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsymspg.so.1()(64bit) python(abi) = 3.12 rtld(GNU_HASH) Obsoletes: python-avogadro2-libs < 1.97.0-8.fc40 Processing files: avogadro2-libs-devel-1.97.0-8.fc40.s390x Provides: avogadro2-libs-devel = 1.97.0-8.fc40 avogadro2-libs-devel(s390-64) = 1.97.0-8.fc40 cmake(AvogadroLibs) = 1.97.0 cmake(avogadrolibs) = 1.97.0 libgwavi-static Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: cmake-filesystem(s390-64) libAvogadroCalc.so.1()(64bit) libAvogadroCore.so.1()(64bit) libAvogadroIO.so.1()(64bit) libAvogadroMoleQueue.so.1()(64bit) libAvogadroQtGui.so.1()(64bit) libAvogadroQtOpenGL.so.1()(64bit) libAvogadroQtPlugins.so.1()(64bit) libAvogadroQuantumIO.so.1()(64bit) libAvogadroRendering.so.1()(64bit) Processing files: avogadro2-libs-doc-1.97.0-8.fc40.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.E7R0n3 + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.97.0 + DOCDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/doc/avogadro2-libs-doc + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/doc/avogadro2-libs-doc + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/README.md /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/doc/avogadro2-libs-doc + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/build/docs/html /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/doc/avogadro2-libs-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.hVcLER + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.97.0 + LICENSEDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/licenses/avogadro2-libs-doc + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/licenses/avogadro2-libs-doc + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/LICENSE /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x/usr/share/licenses/avogadro2-libs-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: avogadro2-libs-doc = 1.97.0-8.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: avogadro2-libs-debugsource-1.97.0-8.fc40.s390x Provides: avogadro2-libs-debugsource = 1.97.0-8.fc40 avogadro2-libs-debugsource(s390-64) = 1.97.0-8.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: avogadro2-libs-debuginfo-1.97.0-8.fc40.s390x Provides: avogadro2-libs-debuginfo = 1.97.0-8.fc40 avogadro2-libs-debuginfo(s390-64) = 1.97.0-8.fc40 debuginfo(build-id) = 15deba07bdf8f62b57fb24d4fce02ae5e3459f39 debuginfo(build-id) = 6346c60691d79d66fef823dabb3f467924b561aa debuginfo(build-id) = 74bbb1bb068cd4cb0be4e0a5f3dbb329fd53a91e debuginfo(build-id) = 916377a4035d3114ec16d57cd32054e10aef8573 debuginfo(build-id) = 94b296dce317469239d7462ccb7532df98829a15 debuginfo(build-id) = dd06065b669789c679329f138490bb12c28426e2 debuginfo(build-id) = dd629fbd4108dad3a14422484941c325efd610e5 debuginfo(build-id) = eb0760d15b5fd462f5d08cd9e6cbfd0ac03e297b debuginfo(build-id) = f90038cacec43da6c749385fd97334f10956f3b2 libAvogadroCalc.so.1.97.0-1.97.0-8.fc40.s390x.debug()(64bit) libAvogadroCore.so.1.97.0-1.97.0-8.fc40.s390x.debug()(64bit) libAvogadroIO.so.1.97.0-1.97.0-8.fc40.s390x.debug()(64bit) libAvogadroMoleQueue.so.1.97.0-1.97.0-8.fc40.s390x.debug()(64bit) libAvogadroQtGui.so.1.97.0-1.97.0-8.fc40.s390x.debug()(64bit) libAvogadroQtOpenGL.so.1.97.0-1.97.0-8.fc40.s390x.debug()(64bit) libAvogadroQtPlugins.so.1.97.0-1.97.0-8.fc40.s390x.debug()(64bit) libAvogadroQuantumIO.so.1.97.0-1.97.0-8.fc40.s390x.debug()(64bit) libAvogadroRendering.so.1.97.0-1.97.0-8.fc40.s390x.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: avogadro2-libs-debugsource(s390-64) = 1.97.0-8.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x Wrote: /builddir/build/RPMS/avogadro2-libs-1.97.0-8.fc40.s390x.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-doc-1.97.0-8.fc40.noarch.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-debugsource-1.97.0-8.fc40.s390x.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-devel-1.97.0-8.fc40.s390x.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-debuginfo-1.97.0-8.fc40.s390x.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.mHm2EV + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.97.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc40.s390x + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.fXGFaQ + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/avogadrolibs-1.97.0-SPECPARTS + rm -rf avogadrolibs-1.97.0 avogadrolibs-1.97.0.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %patchN is deprecated (3 usages found), use %patch N (or %patch -P N) absolute symlink: /usr/lib64/avogadro2/scripts/scripts -> /usr/lib64/python3.12/site-packages/avogadro2/scripts Finish: rpmbuild avogadro2-libs-1.97.0-8.fc40.src.rpm Finish: build phase for avogadro2-libs-1.97.0-8.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-s390x-1695149272.169511/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-s390x-1695149272.169511/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-s390x-1695149272.169511/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/avogadro2-libs-1.97.0-8.fc40.src.rpm) Config(child) 16 minutes 49 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "avogadro2-libs-debuginfo", "epoch": null, "version": "1.97.0", "release": "8.fc40", "arch": "s390x" }, { "name": "avogadro2-libs-debugsource", "epoch": null, "version": "1.97.0", "release": "8.fc40", "arch": "s390x" }, { "name": "avogadro2-libs", "epoch": null, "version": "1.97.0", "release": "8.fc40", "arch": "s390x" }, { "name": "avogadro2-libs-devel", "epoch": null, "version": "1.97.0", "release": "8.fc40", "arch": "s390x" }, { "name": "avogadro2-libs-doc", "epoch": null, "version": "1.97.0", "release": "8.fc40", "arch": "noarch" }, { "name": "avogadro2-libs", "epoch": null, "version": "1.97.0", "release": "8.fc40", "arch": "src" } ] } RPMResults finished