dge {BiocGenerics} | R Documentation |
Accessors and generic functions used in the context of count datasets
Description
These generic functions provide basic interfaces to operations on and data access to count datasets.
Usage
counts(object, ...)
counts(object, ...) <- value
dispTable(object, ...)
dispTable(object, ...) <- value
sizeFactors(object, ...)
sizeFactors(object, ...) <- value
conditions(object, ...)
conditions(object, ...) <- value
design(object, ...)
design(object, ...) <- value
estimateSizeFactors(object, ...)
estimateDispersions(object, ...)
plotDispEsts(object, ...)
Arguments
object |
Object of class for which methods are defined, e.g.,
|
value |
Value to be assigned to corresponding components of
|
... |
Further arguments, perhaps used by metohds |
Details
For the details, please consult the manual pages of the methods in the DESeq, DESeq2, and DEXSeq packages and the package vignettes.
Author(s)
W. Huber, S. Anders
[Package BiocGenerics version 0.42.0 Index]