Warning: Permanently added '3.91.246.206' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7508323-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64


Version: 0.73
PID: 13792
Logging PID: 13793
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 7508323,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-aarch64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '5c68f6a9db36083946686b5cb383a461971aec92',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'mmseq',
 'package_version': '1.0.11-19',
 'project_dirname': 'openblas-0.3.23',
 'project_name': 'openblas-0.3.23',
 'project_owner': 'psimovec',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-rawhide-aarch64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/',
            'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch',
            'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}],
 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/churchyard',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'submitter': 'https://src.fedoraproject.org/user/churchyard',
 'tags': [],
 'task_id': '7508323-fedora-rawhide-aarch64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq /var/lib/copr-rpmbuild/workspace/workdir-yttrw1zh/mmseq --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq', '/var/lib/copr-rpmbuild/workspace/workdir-yttrw1zh/mmseq', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-yttrw1zh/mmseq'...

Running: git checkout 5c68f6a9db36083946686b5cb383a461971aec92 --

cmd: ['git', 'checkout', '5c68f6a9db36083946686b5cb383a461971aec92', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-yttrw1zh/mmseq
rc: 0
stdout: 
stderr: Note: switching to '5c68f6a9db36083946686b5cb383a461971aec92'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 5c68f6a automatic import of mmseq

Running: copr-distgit-client sources

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-yttrw1zh/mmseq
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading 1.0.11.zip
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o 1.0.11.zip --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/mmseq/1.0.11.zip/md5/c727916d339d7a2111523800b621ce2b/1.0.11.zip
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 2781k  100 2781k    0     0  21.3M      0 --:--:-- --:--:-- --:--:-- 21.2M
INFO: Reading stdout from command: md5sum 1.0.11.zip

Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-yttrw1zh/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-yttrw1zh/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1717089561.423908 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-yttrw1zh/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-yttrw1zh/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1717089561.423908 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-yttrw1zh/mmseq/mmseq.spec)  Config(fedora-rawhide-aarch64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.6
INFO: Mock Version: 5.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1717089561.423908/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1717089561.423908/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/576efdaac799b1a20287969a7b508b3287d35f6da3b5e33de100ec71b75d47f0/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/576efdaac799b1a20287969a7b508b3287d35f6da3b5e33de100ec71b75d47f0/merged) with podman image umount
INFO: Package manager dnf5 detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf5 tooling
Updating and loading repositories:
 fedora                                 100% |  33.8 MiB/s |  19.9 MiB |  00m01s
 Additional repo http_kojipkgs_fedorapr 100% |  73.1 MiB/s |  17.3 MiB |  00m00s
 Copr repository                        100% |  43.5 MiB/s |   3.5 MiB |  00m00s
Repositories loaded.
Package "dnf5-5.2.2.0-1.fc41.aarch64" is already installed.

Package                      Arch    Version        Repository                                                         Size
Installing:
 dnf5-plugins                aarch64 5.2.2.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
Installing dependencies:
 elfutils-default-yama-scope noarch  0.191-7.fc41   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 KiB
 elfutils-libelf             aarch64 0.191-7.fc41   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 MiB
 elfutils-libs               aarch64 0.191-7.fc41   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 file-libs                   aarch64 5.45-5.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  10.0 MiB
 libgomp                     aarch64 14.1.1-4.fc41  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 567.3 KiB
 rpm-build-libs              aarch64 4.19.91-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 262.6 KiB

Transaction Summary:
 Installing:        7 packages

Total size of inbound packages is 2 MiB. Need to download 2 MiB.
After this operation 15 MiB will be used (install 15 MiB, remove 0 B).
[1/7] rpm-build-libs-0:4.19.91-4.fc41.a 100% |   1.2 MiB/s |  95.1 KiB |  00m00s
[2/7] dnf5-plugins-0:5.2.2.0-1.fc41.aar 100% |   3.6 MiB/s | 335.6 KiB |  00m00s
[3/7] elfutils-libs-0:0.191-7.fc41.aarc 100% |   7.2 MiB/s | 263.8 KiB |  00m00s
[4/7] elfutils-libelf-0:0.191-7.fc41.aa 100% |   1.7 MiB/s | 208.9 KiB |  00m00s
[5/7] file-libs-0:5.45-5.fc41.aarch64   100% |  24.0 MiB/s | 763.1 KiB |  00m00s
[6/7] libgomp-0:14.1.1-4.fc41.aarch64   100% |  19.5 MiB/s | 340.0 KiB |  00m00s
[7/7] elfutils-default-yama-scope-0:0.1 100% | 702.6 KiB/s |  13.3 KiB |  00m00s
--------------------------------------------------------------------------------
[7/7] Total                             100% |  13.8 MiB/s |   2.0 MiB |  00m00s
Running transaction
[1/9] Verify package files              100% |   1.0 KiB/s |   7.0   B |  00m00s
[2/9] Prepare transaction               100% | 583.0   B/s |   7.0   B |  00m00s
[3/9] Installing elfutils-libelf-0:0.19 100% | 262.8 MiB/s |   1.3 MiB |  00m00s
[4/9] Installing elfutils-default-yama- 100% | 255.4 KiB/s |   2.0 KiB |  00m00s
>>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-7.fc41.n
>>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-7.fc41.noar
[5/9] Installing elfutils-libs-0:0.191- 100% | 196.1 MiB/s |   1.0 MiB |  00m00s
[6/9] Installing libgomp-0:14.1.1-4.fc4 100% | 277.7 MiB/s | 568.7 KiB |  00m00s
[7/9] Installing file-libs-0:5.45-5.fc4 100% | 501.2 MiB/s |  10.0 MiB |  00m00s
[8/9] Installing rpm-build-libs-0:4.19. 100% | 128.6 MiB/s | 263.5 KiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[9/9] Installing dnf5-plugins-0:5.2.2.0 100% |  46.8 MiB/s |   1.5 MiB |  00m00s
>>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-18.fc41.aarch64
>>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-18.fc41.aarch64
Warning: skipped PGP checks for 7 package(s).
Finish(bootstrap): installing dnf5 tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1717089561.423908/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.91-4.fc41.aarch64
  rpm-sequoia-1.6.0-3.fc41.aarch64
  dnf5-5.2.2.0-1.fc41.aarch64
  dnf5-plugins-5.2.2.0-1.fc41.aarch64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% | 193.8 KiB/s |  11.6 KiB |  00m00s
 Copr repository                        100% | 102.5 KiB/s |   1.5 KiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% |  69.9 KiB/s |   4.1 KiB |  00m00s
 Copr repository                        100% |  44.7 MiB/s |   3.5 MiB |  00m00s
Repositories loaded.
Package                            Arch    Version                    Repository                                                         Size
Installing group/module packages:
 bash                              aarch64 5.2.26-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.3 MiB
 bzip2                             aarch64 1.0.8-18.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 427.5 KiB
 coreutils                         aarch64 9.5-1.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  20.7 MiB
 cpio                              aarch64 2.15-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 diffutils                         aarch64 3.10-5.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.1 MiB
 fedora-release-common             noarch  41-0.13                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.2 KiB
 findutils                         aarch64 1:4.9.0-8.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 gawk                              aarch64 5.3.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.2 MiB
 glibc-minimal-langpack            aarch64 2.39.9000-18.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 grep                              aarch64 3.11-8.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 gzip                              aarch64 1.13-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 488.8 KiB
 info                              aarch64 7.1-2.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 613.5 KiB
 patch                             aarch64 2.7.6-24.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 390.5 KiB
 redhat-rpm-config                 noarch  291-1.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183.5 KiB
 rpm-build                         aarch64 4.19.91-4.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 sed                               aarch64 4.9-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 shadow-utils                      aarch64 2:4.15.1-5.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.3 MiB
 tar                               aarch64 2:1.35-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.1 MiB
 unzip                             aarch64 6.0-63.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 726.4 KiB
 util-linux                        aarch64 2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  17.5 MiB
 which                             aarch64 2.21-41.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 248.1 KiB
 xz                                aarch64 1:5.4.6-3.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
Installing dependencies:
 add-determinism-nopython          aarch64 0.2.0-9.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 alternatives                      aarch64 1.27-1.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 218.2 KiB
 ansible-srpm-macros               noarch  1-15.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.7 KiB
 audit-libs                        aarch64 4.0.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 547.2 KiB
 authselect                        aarch64 1.5.0-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 309.4 KiB
 authselect-libs                   aarch64 1.5.0-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 931.8 KiB
 basesystem                        noarch  11-20.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 binutils                          aarch64 2.42.50-11.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  33.7 MiB
 binutils-gold                     aarch64 2.42.50-11.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.1 MiB
 build-reproducibility-srpm-macros noarch  0.2.0-9.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 769.0   B
 bzip2-libs                        aarch64 1.0.8-18.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 200.7 KiB
 ca-certificates                   noarch  2023.2.62_v7.0.401-6.fc40  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 coreutils-common                  aarch64 9.5-1.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.2 MiB
 cracklib                          aarch64 2.9.11-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 934.6 KiB
 crypto-policies                   noarch  20240521-1.gitf71d135.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 120.0 KiB
 curl                              aarch64 8.8.0-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 871.7 KiB
 cyrus-sasl-lib                    aarch64 2.1.28-22.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.1 MiB
 debugedit                         aarch64 5.0-16.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 499.0 KiB
 dwz                               aarch64 0.15-6.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 386.7 KiB
 ed                                aarch64 1.20.2-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 282.7 KiB
 efi-srpm-macros                   noarch  5-11.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.1 KiB
 elfutils                          aarch64 0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.0 MiB
 elfutils-debuginfod-client        aarch64 0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 396.7 KiB
 elfutils-default-yama-scope       noarch  0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 KiB
 elfutils-libelf                   aarch64 0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 MiB
 elfutils-libs                     aarch64 0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 fedora-gpg-keys                   noarch  41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 124.7 KiB
 fedora-release                    noarch  41-0.13                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 fedora-release-identity-basic     noarch  41-0.13                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0   B
 fedora-repos                      noarch  41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.9 KiB
 fedora-repos-rawhide              noarch  41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 file                              aarch64 5.45-5.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 267.4 KiB
 file-libs                         aarch64 5.45-5.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  10.0 MiB
 filesystem                        aarch64 3.18-9.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.0   B
 fonts-srpm-macros                 noarch  1:2.0.5-14.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.3 KiB
 forge-srpm-macros                 noarch  0.3.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.0 KiB
 fpc-srpm-macros                   noarch  1.3-12.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0   B
 gdb-minimal                       aarch64 14.2-9.fc41                copr_base                                                      12.7 MiB
 gdbm                              aarch64 1:1.23-6.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 928.2 KiB
 gdbm-libs                         aarch64 1:1.23-6.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 425.8 KiB
 ghc-srpm-macros                   noarch  1.9.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 747.0   B
 glibc                             aarch64 2.39.9000-18.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.8 MiB
 glibc-common                      aarch64 2.39.9000-18.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.6 MiB
 glibc-gconv-extra                 aarch64 2.39.9000-18.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  49.0 MiB
 gmp                               aarch64 1:6.3.0-1.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 721.9 KiB
 gnat-srpm-macros                  noarch  6-5.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 KiB
 go-srpm-macros                    noarch  3.6.0-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  60.8 KiB
 jansson                           aarch64 2.13.1-9.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 220.4 KiB
 kernel-srpm-macros                noarch  1.0-23.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 keyutils-libs                     aarch64 1.6.3-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 226.3 KiB
 krb5-libs                         aarch64 1.21.2-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.4 MiB
 libacl                            aarch64 2.3.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 196.0 KiB
 libarchive                        aarch64 3.7.4-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 libattr                           aarch64 2.5.2-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 196.5 KiB
 libblkid                          aarch64 2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 418.5 KiB
 libbrotli                         aarch64 1.1.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 libcap                            aarch64 2.70-1.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 libcap-ng                         aarch64 0.8.5-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 417.0 KiB
 libcom_err                        aarch64 1.47.0-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 239.2 KiB
 libcurl                           aarch64 8.8.0-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 921.5 KiB
 libeconf                          aarch64 0.6.2-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 206.0 KiB
 libevent                          aarch64 2.1.12-13.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 libfdisk                          aarch64 2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 482.8 KiB
 libffi                            aarch64 3.4.6-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 282.3 KiB
 libgcc                            aarch64 14.1.1-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 350.2 KiB
 libgomp                           aarch64 14.1.1-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 567.3 KiB
 libidn2                           aarch64 2.3.7-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 457.1 KiB
 libmount                          aarch64 2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 483.8 KiB
 libnghttp2                        aarch64 1.62.0-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 262.1 KiB
 libnsl2                           aarch64 2.0.1-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 221.9 KiB
 libpkgconf                        aarch64 2.1.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 198.0 KiB
 libpsl                            aarch64 0.21.5-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 196.5 KiB
 libpwquality                      aarch64 1.4.5-9.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 libselinux                        aarch64 3.6-4.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 265.1 KiB
 libsemanage                       aarch64 3.6-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 361.4 KiB
 libsepol                          aarch64 3.6-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 874.0 KiB
 libsmartcols                      aarch64 2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 288.4 KiB
 libssh                            aarch64 0.10.6-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 581.2 KiB
 libssh-config                     noarch  0.10.6-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.0   B
 libstdc++                         aarch64 14.1.1-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.8 MiB
 libtasn1                          aarch64 4.19.0-6.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 283.7 KiB
 libtirpc                          aarch64 1.3.4-1.rc3.fc41           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 274.6 KiB
 libtool-ltdl                      aarch64 2.4.7-10.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 222.2 KiB
 libunistring                      aarch64 1.1-7.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 libutempter                       aarch64 1.2.1-13.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 417.6 KiB
 libuuid                           aarch64 2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 197.4 KiB
 libverto                          aarch64 0.3.2-8.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 197.4 KiB
 libxcrypt                         aarch64 4.4.36-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 398.9 KiB
 libxml2                           aarch64 2.12.7-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 MiB
 libzstd                           aarch64 1.5.6-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 795.9 KiB
 lua-libs                          aarch64 5.4.6-5.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 393.0 KiB
 lua-srpm-macros                   noarch  1-13.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 KiB
 lz4-libs                          aarch64 1.9.4-6.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 261.4 KiB
 mpfr                              aarch64 4.2.1-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 818.8 KiB
 ncurses-base                      noarch  6.4-12.20240127.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.2 KiB
 ncurses-libs                      aarch64 6.4-12.20240127.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 MiB
 ocaml-srpm-macros                 noarch  10-1.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 openblas-srpm-macros              noarch  2-17.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0   B
 openldap                          aarch64 2.6.8-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 openssl-libs                      aarch64 1:3.2.1-6.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.8 MiB
 p11-kit                           aarch64 0.25.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.8 MiB
 p11-kit-trust                     aarch64 0.25.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 655.4 KiB
 package-notes-srpm-macros         noarch  0.5-11.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 KiB
 pam                               aarch64 1.6.1-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.0 MiB
 pam-libs                          aarch64 1.6.1-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 607.0 KiB
 pcre2                             aarch64 10.43-2.fc41.1             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 905.3 KiB
 pcre2-syntax                      noarch  10.43-2.fc41.1             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 249.0 KiB
 perl-srpm-macros                  noarch  1-53.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0   B
 pkgconf                           aarch64 2.1.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 238.7 KiB
 pkgconf-m4                        noarch  2.1.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.9 KiB
 pkgconf-pkg-config                aarch64 2.1.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 990.0   B
 popt                              aarch64 1.19-6.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 272.8 KiB
 publicsuffix-list-dafsa           noarch  20240107-3.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.5 KiB
 pyproject-srpm-macros             noarch  1.12.0-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 KiB
 python-srpm-macros                noarch  3.12-9.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  50.5 KiB
 qt5-srpm-macros                   noarch  5.15.13-1.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 492.0   B
 qt6-srpm-macros                   noarch  6.7.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0   B
 readline                          aarch64 8.2-8.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 689.1 KiB
 rpm                               aarch64 4.19.91-4.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.9 MiB
 rpm-build-libs                    aarch64 4.19.91-4.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 262.6 KiB
 rpm-libs                          aarch64 4.19.91-4.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.8 KiB
 rpm-sequoia                       aarch64 1.6.0-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.1 MiB
 rust-srpm-macros                  noarch  26.3-1.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.8 KiB
 setup                             noarch  2.15.0-3.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB
 sqlite-libs                       aarch64 3.45.3-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 systemd-libs                      aarch64 256~rc3-3.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.6 MiB
 util-linux-core                   aarch64 2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.2 MiB
 xxhash-libs                       aarch64 0.8.2-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 212.2 KiB
 xz-libs                           aarch64 1:5.4.6-3.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 265.6 KiB
 zig-srpm-macros                   noarch  1-2.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 KiB
 zip                               aarch64 3.0-40.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 zlib-ng-compat                    aarch64 2.1.6-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 261.7 KiB
 zstd                              aarch64 1.5.6-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
Installing groups:
 Buildsystem building group                                                                                                                  

Transaction Summary:
 Installing:      155 packages

Total size of inbound packages is 53 MiB. Need to download 0 B.
After this operation 310 MiB will be used (install 310 MiB, remove 0 B).
[  1/155] tar-2:1.35-3.fc40.aarch64     100% |   0.0   B/s |   0.0   B |  00m00s
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[  2/155] bzip2-0:1.0.8-18.fc40.aarch64 100% |   0.0   B/s |   0.0   B |  00m00s
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[  3/155] redhat-rpm-config-0:291-1.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[  4/155] rpm-build-0:4.19.91-4.fc41.aa 100% |   0.0   B/s |   0.0   B |  00m00s
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[  5/155] unzip-0:6.0-63.fc40.aarch64   100% |   0.0   B/s |   0.0   B |  00m00s
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[  6/155] cpio-0:2.15-1.fc40.aarch64    100% |   0.0   B/s |   0.0   B |  00m00s
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[  7/155] which-0:2.21-41.fc40.aarch64  100% |   0.0   B/s |   0.0   B |  00m00s
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[  8/155] bash-0:5.2.26-3.fc40.aarch64  100% |   0.0   B/s |   0.0   B |  00m00s
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[  9/155] coreutils-0:9.5-1.fc41.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 10/155] grep-0:3.11-8.fc41.aarch64    100% |   0.0   B/s |   0.0   B |  00m00s
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[ 11/155] patch-0:2.7.6-24.fc40.aarch64 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 12/155] sed-0:4.9-1.fc40.aarch64      100% |   0.0   B/s |   0.0   B |  00m00s
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[ 13/155] shadow-utils-2:4.15.1-5.fc41. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 14/155] util-linux-0:2.40.1-1.fc41.aa 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 15/155] diffutils-0:3.10-5.fc40.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 16/155] fedora-release-common-0:41-0. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 17/155] findutils-1:4.9.0-8.fc40.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 18/155] gawk-0:5.3.0-3.fc40.aarch64   100% |   0.0   B/s |   0.0   B |  00m00s
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[ 19/155] glibc-minimal-langpack-0:2.39 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 20/155] gzip-0:1.13-1.fc40.aarch64    100% |   0.0   B/s |   0.0   B |  00m00s
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[ 21/155] info-0:7.1-2.fc40.aarch64     100% |   0.0   B/s |   0.0   B |  00m00s
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[ 22/155] xz-1:5.4.6-3.fc41.aarch64     100% |   0.0   B/s |   0.0   B |  00m00s
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[ 26/155] authselect-libs-0:1.5.0-5.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 27/155] libblkid-0:2.40.1-1.fc41.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 28/155] libcap-ng-0:0.8.5-1.fc41.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 31/155] libselinux-0:3.6-4.fc40.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 34/155] libuuid-0:2.40.1-1.fc41.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 35/155] ncurses-libs-0:6.4-12.2024012 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 36/155] pam-0:1.6.1-3.fc41.aarch64    100% |   0.0   B/s |   0.0   B |  00m00s
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[ 37/155] pam-libs-0:1.6.1-3.fc41.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 38/155] readline-0:8.2-8.fc40.aarch64 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 39/155] systemd-libs-0:256~rc3-3.fc41 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 40/155] util-linux-core-0:2.40.1-1.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 45/155] libgcc-0:14.1.1-4.fc41.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 46/155] libattr-0:2.5.2-3.fc40.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 47/155] libeconf-0:0.6.2-2.fc41.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 48/155] libsemanage-0:3.6-3.fc40.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 49/155] libxcrypt-0:4.4.36-5.fc40.aar 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 50/155] setup-0:2.15.0-3.fc41.noarch  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 51/155] binutils-0:2.42.50-11.fc41.aa 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 56/155] libarchive-0:3.7.4-1.fc41.aar 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 58/155] popt-0:1.19-6.fc40.aarch64    100% |   0.0   B/s |   0.0   B |  00m00s
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[ 59/155] rpm-0:4.19.91-4.fc41.aarch64  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 60/155] rpm-build-libs-0:4.19.91-4.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 61/155] rpm-libs-0:4.19.91-4.fc41.aar 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 62/155] zstd-0:1.5.6-1.fc41.aarch64   100% |   0.0   B/s |   0.0   B |  00m00s
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[ 63/155] curl-0:8.8.0-1.fc41.aarch64   100% |   0.0   B/s |   0.0   B |  00m00s
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[ 64/155] glibc-gconv-extra-0:2.39.9000 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 65/155] ansible-srpm-macros-0:1-15.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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--------------------------------------------------------------------------------
[155/155] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
Running transaction
[  1/157] Verify package files          100% | 711.0   B/s | 155.0   B |  00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-9.fc41.aarch64
>>> Stop pre-transaction scriptlet: filesystem-0:3.18-9.fc41.aarch64
[  2/157] Prepare transaction           100% |   2.4 KiB/s | 155.0   B |  00m00s
[  3/157] Installing libgcc-0:14.1.1-4. 100% | 171.7 MiB/s | 351.7 KiB |  00m00s
>>> Running post-install scriptlet: libgcc-0:14.1.1-4.fc41.aarch64
>>> Stop post-install scriptlet: libgcc-0:14.1.1-4.fc41.aarch64
[  4/157] Installing crypto-policies-0: 100% |  20.5 MiB/s | 147.0 KiB |  00m00s
>>> Running post-install scriptlet: crypto-policies-0:20240521-1.gitf71d135.fc41
>>> Stop post-install scriptlet: crypto-policies-0:20240521-1.gitf71d135.fc41.no
[  5/157] Installing publicsuffix-list- 100% |  66.7 MiB/s |  68.3 KiB |  00m00s
[  6/157] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  7/157] Installing fedora-release-ide 100% |   0.0   B/s | 952.0   B |  00m00s
[  8/157] Installing fedora-gpg-keys-0: 100% |  27.6 MiB/s | 169.7 KiB |  00m00s
[  9/157] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[ 10/157] Installing fedora-repos-0:41- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[ 11/157] Installing fedora-release-com 100% |  22.9 MiB/s |  23.5 KiB |  00m00s
[ 12/157] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 13/157] Installing setup-0:2.15.0-3.f 100% |  44.3 MiB/s | 726.1 KiB |  00m00s
>>> Running post-install scriptlet: setup-0:2.15.0-3.fc41.noarch
>>> Stop post-install scriptlet: setup-0:2.15.0-3.fc41.noarch
[ 14/157] Installing filesystem-0:3.18- 100% |   2.2 MiB/s | 212.5 KiB |  00m00s
[ 15/157] Installing basesystem-0:11-20 100% |   0.0   B/s | 124.0   B |  00m00s
[ 16/157] Installing pcre2-syntax-0:10. 100% | 122.8 MiB/s | 251.5 KiB |  00m00s
[ 17/157] Installing coreutils-common-0 100% | 272.9 MiB/s |  11.2 MiB |  00m00s
[ 18/157] Installing ncurses-base-0:6.4 100% |  49.1 MiB/s | 351.6 KiB |  00m00s
[ 19/157] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 20/157] Installing ncurses-libs-0:6.4 100% | 280.9 MiB/s |   2.2 MiB |  00m00s
>>> Running pre-install scriptlet: glibc-0:2.39.9000-18.fc41.aarch64
>>> Stop pre-install scriptlet: glibc-0:2.39.9000-18.fc41.aarch64
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[ 21/157] Installing glibc-0:2.39.9000- 100% | 252.2 MiB/s |   9.8 MiB |  00m00s
>>> Running post-install scriptlet: glibc-0:2.39.9000-18.fc41.aarch64
>>> Stop post-install scriptlet: glibc-0:2.39.9000-18.fc41.aarch64
[ 22/157] Installing bash-0:5.2.26-3.fc 100% | 277.1 MiB/s |   8.3 MiB |  00m00s
>>> Running post-install scriptlet: bash-0:5.2.26-3.fc40.aarch64
>>> Stop post-install scriptlet: bash-0:5.2.26-3.fc40.aarch64
[ 23/157] Installing glibc-common-0:2.3 100% | 285.5 MiB/s |   2.6 MiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[ 24/157] Installing glibc-gconv-extra- 100% | 521.8 MiB/s |  49.0 MiB |  00m00s
>>> Running post-install scriptlet: glibc-gconv-extra-0:2.39.9000-18.fc41.aarch6
>>> Stop post-install scriptlet: glibc-gconv-extra-0:2.39.9000-18.fc41.aarch64
[ 25/157] Installing zlib-ng-compat-0:2 100% | 128.2 MiB/s | 262.5 KiB |  00m00s
[ 26/157] Installing bzip2-libs-0:1.0.8 100% | 197.0 MiB/s | 201.8 KiB |  00m00s
[ 27/157] Installing xz-libs-1:5.4.6-3. 100% | 130.3 MiB/s | 266.8 KiB |  00m00s
[ 28/157] Installing libuuid-0:2.40.1-1 100% | 193.7 MiB/s | 198.4 KiB |  00m00s
[ 29/157] Installing readline-0:8.2-8.f 100% | 225.0 MiB/s | 691.2 KiB |  00m00s
[ 30/157] Installing popt-0:1.19-6.fc40 100% |  68.2 MiB/s | 279.4 KiB |  00m00s
[ 31/157] Installing libzstd-0:1.5.6-1. 100% | 259.5 MiB/s | 797.2 KiB |  00m00s
[ 32/157] Installing elfutils-libelf-0: 100% | 262.8 MiB/s |   1.3 MiB |  00m00s
[ 33/157] Installing libstdc++-0:14.1.1 100% | 277.0 MiB/s |   2.8 MiB |  00m00s
[ 34/157] Installing libblkid-0:2.40.1- 100% | 204.9 MiB/s | 419.6 KiB |  00m00s
[ 35/157] Installing libattr-0:2.5.2-3. 100% | 192.8 MiB/s | 197.4 KiB |  00m00s
[ 36/157] Installing libacl-0:2.3.2-1.f 100% | 192.2 MiB/s | 196.8 KiB |  00m00s
[ 37/157] Installing libxcrypt-0:4.4.36 100% | 196.1 MiB/s | 401.6 KiB |  00m00s
[ 38/157] Installing gmp-1:6.3.0-1.fc41 100% | 235.7 MiB/s | 724.2 KiB |  00m00s
[ 39/157] Installing libeconf-0:0.6.2-2 100% | 202.8 MiB/s | 207.6 KiB |  00m00s
[ 40/157] Installing gdbm-libs-1:1.23-6 100% | 208.7 MiB/s | 427.5 KiB |  00m00s
[ 41/157] Installing mpfr-0:4.2.1-4.fc4 100% | 200.3 MiB/s | 820.4 KiB |  00m00s
[ 42/157] Installing gawk-0:5.3.0-3.fc4 100% | 355.2 MiB/s |   4.3 MiB |  00m00s
[ 43/157] Installing dwz-0:0.15-6.fc40. 100% | 189.5 MiB/s | 388.1 KiB |  00m00s
[ 44/157] Installing unzip-0:6.0-63.fc4 100% | 237.6 MiB/s | 729.8 KiB |  00m00s
[ 45/157] Installing file-libs-0:5.45-5 100% | 527.6 MiB/s |  10.0 MiB |  00m00s
[ 46/157] Installing file-0:5.45-5.fc41 100% | 262.6 MiB/s | 268.9 KiB |  00m00s
[ 47/157] Installing libcap-ng-0:0.8.5- 100% | 409.1 MiB/s | 418.9 KiB |  00m00s
[ 48/157] Installing audit-libs-0:4.0.1 100% | 268.2 MiB/s | 549.4 KiB |  00m00s
[ 49/157] Installing pam-libs-0:1.6.1-3 100% | 297.4 MiB/s | 609.1 KiB |  00m00s
[ 50/157] Installing libcap-0:2.70-1.fc 100% | 343.9 MiB/s |   1.4 MiB |  00m00s
[ 51/157] Installing systemd-libs-0:256 100% | 287.0 MiB/s |   2.6 MiB |  00m00s
[ 52/157] Installing libsmartcols-0:2.4 100% | 282.6 MiB/s | 289.4 KiB |  00m00s
[ 53/157] Installing libcom_err-0:1.47. 100% | 234.7 MiB/s | 240.3 KiB |  00m00s
[ 54/157] Installing libsepol-0:3.6-3.f 100% | 284.8 MiB/s | 874.9 KiB |  00m00s
[ 55/157] Installing pcre2-0:10.43-2.fc 100% | 295.2 MiB/s | 906.7 KiB |  00m00s
[ 56/157] Installing libselinux-0:3.6-4 100% | 130.0 MiB/s | 266.3 KiB |  00m00s
[ 57/157] Installing sed-0:4.9-1.fc40.a 100% | 164.3 MiB/s |   1.0 MiB |  00m00s
[ 58/157] Installing grep-0:3.11-8.fc41 100% | 137.1 MiB/s |   1.1 MiB |  00m00s
[ 59/157] Installing findutils-1:4.9.0- 100% | 184.6 MiB/s |   1.7 MiB |  00m00s
[ 60/157] Installing xz-1:5.4.6-3.fc41. 100% | 190.3 MiB/s |   2.3 MiB |  00m00s
[ 61/157] Installing libmount-0:2.40.1- 100% | 236.7 MiB/s | 484.8 KiB |  00m00s
[ 62/157] Installing lz4-libs-0:1.9.4-6 100% | 256.3 MiB/s | 262.5 KiB |  00m00s
[ 63/157] Installing alternatives-0:1.2 100% | 214.7 MiB/s | 219.9 KiB |  00m00s
[ 64/157] Installing jansson-0:2.13.1-9 100% | 216.5 MiB/s | 221.7 KiB |  00m00s
[ 65/157] Installing lua-libs-0:5.4.6-5 100% | 192.5 MiB/s | 394.2 KiB |  00m00s
[ 66/157] Installing libtasn1-0:4.19.0- 100% | 139.4 MiB/s | 285.5 KiB |  00m00s
[ 67/157] Installing libunistring-0:1.1 100% | 311.9 MiB/s |   1.9 MiB |  00m00s
[ 68/157] Installing libidn2-0:2.3.7-1. 100% | 113.0 MiB/s | 463.0 KiB |  00m00s
[ 69/157] Installing libpsl-0:0.21.5-3. 100% | 193.0 MiB/s | 197.6 KiB |  00m00s
[ 70/157] Installing zstd-0:1.5.6-1.fc4 100% | 261.0 MiB/s |   1.6 MiB |  00m00s
[ 71/157] Installing util-linux-core-0: 100% | 413.3 MiB/s |   6.2 MiB |  00m00s
[ 72/157] Installing tar-2:1.35-3.fc40. 100% | 255.6 MiB/s |   3.1 MiB |  00m00s
[ 73/157] Installing libsemanage-0:3.6- 100% | 118.2 MiB/s | 363.2 KiB |  00m00s
[ 74/157] Installing shadow-utils-2:4.1 100% | 171.6 MiB/s |   7.4 MiB |  00m00s
>>> Running pre-install scriptlet: libutempter-0:1.2.1-13.fc40.aarch64
>>> Stop pre-install scriptlet: libutempter-0:1.2.1-13.fc40.aarch64
[ 75/157] Installing libutempter-0:1.2. 100% | 136.6 MiB/s | 419.6 KiB |  00m00s
[ 76/157] Installing zip-0:3.0-40.fc40. 100% | 281.0 MiB/s |   1.1 MiB |  00m00s
[ 77/157] Installing gdbm-1:1.23-6.fc40 100% | 227.8 MiB/s | 933.2 KiB |  00m00s
[ 78/157] Installing cyrus-sasl-lib-0:2 100% | 282.4 MiB/s |   3.1 MiB |  00m00s
[ 79/157] Installing libfdisk-0:2.40.1- 100% | 236.2 MiB/s | 483.8 KiB |  00m00s
[ 80/157] Installing add-determinism-no 100% | 285.0 MiB/s |   2.3 MiB |  00m00s
[ 81/157] Installing build-reproducibil 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 82/157] Installing libxml2-0:2.12.7-1 100% | 275.5 MiB/s |   2.2 MiB |  00m00s
[ 83/157] Installing bzip2-0:1.0.8-18.f 100% | 210.9 MiB/s | 432.0 KiB |  00m00s
[ 84/157] Installing sqlite-libs-0:3.45 100% | 249.3 MiB/s |   1.5 MiB |  00m00s
[ 85/157] Installing ed-0:1.20.2-1.fc41 100% | 139.2 MiB/s | 285.0 KiB |  00m00s
[ 86/157] Installing patch-0:2.7.6-24.f 100% | 191.4 MiB/s | 392.0 KiB |  00m00s
[ 87/157] Installing elfutils-default-y 100% | 340.5 KiB/s |   2.0 KiB |  00m00s
>>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-7.fc41.n
>>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-7.fc41.noar
[ 88/157] Installing elfutils-libs-0:0. 100% | 245.1 MiB/s |   1.0 MiB |  00m00s
[ 89/157] Installing cpio-0:2.15-1.fc40 100% | 174.4 MiB/s |   1.2 MiB |  00m00s
[ 90/157] Installing diffutils-0:3.10-5 100% | 234.3 MiB/s |   2.1 MiB |  00m00s
[ 91/157] Installing libpkgconf-0:2.1.1 100% | 194.5 MiB/s | 199.2 KiB |  00m00s
[ 92/157] Installing pkgconf-0:2.1.1-1. 100% | 117.8 MiB/s | 241.2 KiB |  00m00s
[ 93/157] Installing keyutils-libs-0:1. 100% | 222.4 MiB/s | 227.8 KiB |  00m00s
[ 94/157] Installing libverto-0:0.3.2-8 100% | 194.6 MiB/s | 199.2 KiB |  00m00s
[ 95/157] Installing libgomp-0:14.1.1-4 100% | 185.1 MiB/s | 568.7 KiB |  00m00s
[ 96/157] Installing libffi-0:3.4.6-1.f 100% | 277.1 MiB/s | 283.7 KiB |  00m00s
[ 97/157] Installing p11-kit-0:0.25.3-4 100% | 202.3 MiB/s |   2.8 MiB |  00m00s
[ 98/157] Installing p11-kit-trust-0:0. 100% |  64.2 MiB/s | 657.2 KiB |  00m00s
>>> Running post-install scriptlet: p11-kit-trust-0:0.25.3-4.fc40.aarch64
>>> Stop post-install scriptlet: p11-kit-trust-0:0.25.3-4.fc40.aarch64
[ 99/157] Installing openssl-libs-1:3.2 100% | 277.6 MiB/s |   7.8 MiB |  00m00s
[100/157] Installing coreutils-0:9.5-1. 100% | 424.3 MiB/s |  20.8 MiB |  00m00s
>>> Running pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.n
>>> Stop pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noar
[101/157] Installing ca-certificates-0: 100% |   2.3 MiB/s |   2.3 MiB |  00m01s
>>> Running post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.
>>> Stop post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noa
[102/157] Installing krb5-libs-0:1.21.2 100% | 243.3 MiB/s |   3.4 MiB |  00m00s
[103/157] Installing libarchive-0:3.7.4 100% | 254.0 MiB/s |   1.0 MiB |  00m00s
[104/157] Installing libtirpc-0:1.3.4-1 100% | 135.0 MiB/s | 276.4 KiB |  00m00s
[105/157] Installing gzip-0:1.13-1.fc40 100% | 120.7 MiB/s | 494.3 KiB |  00m00s
[106/157] Installing authselect-libs-0: 100% | 115.6 MiB/s | 946.7 KiB |  00m00s
[107/157] Installing authselect-0:1.5.0 100% | 102.1 MiB/s | 313.8 KiB |  00m00s
[108/157] Installing cracklib-0:2.9.11- 100% | 154.0 MiB/s | 946.0 KiB |  00m00s
[109/157] Installing libpwquality-0:1.4 100% | 138.4 MiB/s |   1.1 MiB |  00m00s
[110/157] Installing libnsl2-0:2.0.1-1. 100% | 108.9 MiB/s | 223.0 KiB |  00m00s
[111/157] Installing pam-0:1.6.1-3.fc41 100% | 344.8 MiB/s |  11.0 MiB |  00m00s
[112/157] Installing libssh-0:0.10.6-6. 100% | 189.9 MiB/s | 583.3 KiB |  00m00s
[113/157] Installing rpm-sequoia-0:1.6. 100% | 263.1 MiB/s |   2.1 MiB |  00m00s
[114/157] Installing rpm-libs-0:4.19.91 100% | 210.8 MiB/s | 863.3 KiB |  00m00s
[115/157] Installing rpm-build-libs-0:4 100% | 257.3 MiB/s | 263.5 KiB |  00m00s
[116/157] Installing libevent-0:2.1.12- 100% | 304.6 MiB/s |   1.5 MiB |  00m00s
[117/157] Installing xxhash-libs-0:0.8. 100% | 208.6 MiB/s | 213.6 KiB |  00m00s
[118/157] Installing libbrotli-0:1.1.0- 100% | 285.1 MiB/s |   1.1 MiB |  00m00s
[119/157] Installing libnghttp2-0:1.62. 100% | 257.1 MiB/s | 263.2 KiB |  00m00s
[120/157] Installing libtool-ltdl-0:2.4 100% | 218.0 MiB/s | 223.3 KiB |  00m00s
[121/157] Installing openldap-0:2.6.8-1 100% | 249.0 MiB/s |   1.0 MiB |  00m00s
[122/157] Installing libcurl-0:8.8.0-1. 100% | 225.3 MiB/s | 922.6 KiB |  00m00s
[123/157] Installing elfutils-debuginfo 100% | 194.7 MiB/s | 398.7 KiB |  00m00s
[124/157] Installing binutils-gold-0:2. 100% | 180.8 MiB/s |   3.1 MiB |  00m00s
>>> Running post-install scriptlet: binutils-gold-0:2.42.50-11.fc41.aarch64
>>> Stop post-install scriptlet: binutils-gold-0:2.42.50-11.fc41.aarch64
[125/157] Installing binutils-0:2.42.50 100% | 309.9 MiB/s |  33.8 MiB |  00m00s
>>> Running post-install scriptlet: binutils-0:2.42.50-11.fc41.aarch64
>>> Stop post-install scriptlet: binutils-0:2.42.50-11.fc41.aarch64
[126/157] Installing elfutils-0:0.191-7 100% | 334.4 MiB/s |   5.0 MiB |  00m00s
[127/157] Installing gdb-minimal-0:14.2 100% | 282.6 MiB/s |  12.7 MiB |  00m00s
[128/157] Installing debugedit-0:5.0-16 100% | 245.0 MiB/s | 501.8 KiB |  00m00s
[129/157] Installing curl-0:8.8.0-1.fc4 100% |  65.7 MiB/s | 874.2 KiB |  00m00s
>>> Running pre-install scriptlet: rpm-0:4.19.91-4.fc41.aarch64
>>> Stop pre-install scriptlet: rpm-0:4.19.91-4.fc41.aarch64
[130/157] Installing rpm-0:4.19.91-4.fc 100% | 133.9 MiB/s |   3.3 MiB |  00m00s
[131/157] Installing efi-srpm-macros-0: 100% |  40.2 MiB/s |  41.2 KiB |  00m00s
[132/157] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[133/157] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[134/157] Installing pkgconf-m4-0:2.1.1 100% |   0.0   B/s |  14.3 KiB |  00m00s
[135/157] Installing pkgconf-pkg-config 100% |   1.7 MiB/s |   1.8 KiB |  00m00s
[136/157] Installing rust-srpm-macros-0 100% |   0.0   B/s |   5.6 KiB |  00m00s
[137/157] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[138/157] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 768.0   B |  00m00s
[139/157] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[140/157] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[141/157] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[142/157] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[143/157] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[144/157] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[145/157] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[146/157] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[147/157] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[148/157] Installing fonts-srpm-macros- 100% |  55.1 MiB/s |  56.5 KiB |  00m00s
[149/157] Installing forge-srpm-macros- 100% |  39.4 MiB/s |  40.3 KiB |  00m00s
[150/157] Installing go-srpm-macros-0:3 100% |  60.5 MiB/s |  62.0 KiB |  00m00s
[151/157] Installing python-srpm-macros 100% |  50.5 MiB/s |  51.7 KiB |  00m00s
[152/157] Installing redhat-rpm-config- 100% |  61.9 MiB/s | 190.0 KiB |  00m00s
[153/157] Installing rpm-build-0:4.19.9 100% | 279.3 MiB/s |   1.4 MiB |  00m00s
[154/157] Installing pyproject-srpm-mac 100% |   2.0 MiB/s |   2.1 KiB |  00m00s
[155/157] Installing util-linux-0:2.40. 100% | 343.7 MiB/s |  17.5 MiB |  00m00s
>>> Running post-install scriptlet: util-linux-0:2.40.1-1.fc41.aarch64
>>> Stop post-install scriptlet: util-linux-0:2.40.1-1.fc41.aarch64
[156/157] Installing which-0:2.21-41.fc 100% | 122.2 MiB/s | 250.3 KiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[157/157] Installing info-0:7.1-2.fc40. 100% | 476.2 KiB/s | 613.9 KiB |  00m01s
>>> Running post-transaction scriptlet: filesystem-0:3.18-9.fc41.aarch64
>>> Stop post-transaction scriptlet: filesystem-0:3.18-9.fc41.aarch64
>>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.f
>>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40
>>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc41.aarch64
>>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc41.aarch64
>>> Running post-transaction scriptlet: rpm-0:4.19.91-4.fc41.aarch64
>>> Stop post-transaction scriptlet: rpm-0:4.19.91-4.fc41.aarch64
>>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-18.fc41.aarch64
>>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-18.fc41.aarch64
>>> Running trigger-install scriptlet: info-0:7.1-2.fc40.aarch64
>>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.aarch64
Warning: skipped PGP checks for 155 package(s).
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-nopython-0.2.0-9.fc41.aarch64
alternatives-1.27-1.fc41.aarch64
ansible-srpm-macros-1-15.fc41.noarch
audit-libs-4.0.1-2.fc41.aarch64
authselect-1.5.0-5.fc41.aarch64
authselect-libs-1.5.0-5.fc41.aarch64
basesystem-11-20.fc40.noarch
bash-5.2.26-3.fc40.aarch64
binutils-2.42.50-11.fc41.aarch64
binutils-gold-2.42.50-11.fc41.aarch64
build-reproducibility-srpm-macros-0.2.0-9.fc41.noarch
bzip2-1.0.8-18.fc40.aarch64
bzip2-libs-1.0.8-18.fc40.aarch64
ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch
coreutils-9.5-1.fc41.aarch64
coreutils-common-9.5-1.fc41.aarch64
cpio-2.15-1.fc40.aarch64
cracklib-2.9.11-5.fc40.aarch64
crypto-policies-20240521-1.gitf71d135.fc41.noarch
curl-8.8.0-1.fc41.aarch64
cyrus-sasl-lib-2.1.28-22.fc41.aarch64
debugedit-5.0-16.fc41.aarch64
diffutils-3.10-5.fc40.aarch64
dwz-0.15-6.fc40.aarch64
ed-1.20.2-1.fc41.aarch64
efi-srpm-macros-5-11.fc40.noarch
elfutils-0.191-7.fc41.aarch64
elfutils-debuginfod-client-0.191-7.fc41.aarch64
elfutils-default-yama-scope-0.191-7.fc41.noarch
elfutils-libelf-0.191-7.fc41.aarch64
elfutils-libs-0.191-7.fc41.aarch64
fedora-gpg-keys-41-0.2.noarch
fedora-release-41-0.13.noarch
fedora-release-common-41-0.13.noarch
fedora-release-identity-basic-41-0.13.noarch
fedora-repos-41-0.2.noarch
fedora-repos-rawhide-41-0.2.noarch
file-5.45-5.fc41.aarch64
file-libs-5.45-5.fc41.aarch64
filesystem-3.18-9.fc41.aarch64
findutils-4.9.0-8.fc40.aarch64
fonts-srpm-macros-2.0.5-14.fc40.noarch
forge-srpm-macros-0.3.1-1.fc41.noarch
fpc-srpm-macros-1.3-12.fc40.noarch
gawk-5.3.0-3.fc40.aarch64
gdb-minimal-14.2-9.fc41.aarch64
gdbm-1.23-6.fc40.aarch64
gdbm-libs-1.23-6.fc40.aarch64
ghc-srpm-macros-1.9.1-1.fc41.noarch
glibc-2.39.9000-18.fc41.aarch64
glibc-common-2.39.9000-18.fc41.aarch64
glibc-gconv-extra-2.39.9000-18.fc41.aarch64
glibc-minimal-langpack-2.39.9000-18.fc41.aarch64
gmp-6.3.0-1.fc41.aarch64
gnat-srpm-macros-6-5.fc40.noarch
go-srpm-macros-3.6.0-1.fc41.noarch
grep-3.11-8.fc41.aarch64
gzip-1.13-1.fc40.aarch64
info-7.1-2.fc40.aarch64
jansson-2.13.1-9.fc40.aarch64
kernel-srpm-macros-1.0-23.fc41.noarch
keyutils-libs-1.6.3-3.fc40.aarch64
krb5-libs-1.21.2-5.fc40.aarch64
libacl-2.3.2-1.fc40.aarch64
libarchive-3.7.4-1.fc41.aarch64
libattr-2.5.2-3.fc40.aarch64
libblkid-2.40.1-1.fc41.aarch64
libbrotli-1.1.0-3.fc40.aarch64
libcap-2.70-1.fc41.aarch64
libcap-ng-0.8.5-1.fc41.aarch64
libcom_err-1.47.0-5.fc40.aarch64
libcurl-8.8.0-1.fc41.aarch64
libeconf-0.6.2-2.fc41.aarch64
libevent-2.1.12-13.fc41.aarch64
libfdisk-2.40.1-1.fc41.aarch64
libffi-3.4.6-1.fc41.aarch64
libgcc-14.1.1-4.fc41.aarch64
libgomp-14.1.1-4.fc41.aarch64
libidn2-2.3.7-1.fc40.aarch64
libmount-2.40.1-1.fc41.aarch64
libnghttp2-1.62.0-1.fc41.aarch64
libnsl2-2.0.1-1.fc40.aarch64
libpkgconf-2.1.1-1.fc41.aarch64
libpsl-0.21.5-3.fc40.aarch64
libpwquality-1.4.5-9.fc40.aarch64
libselinux-3.6-4.fc40.aarch64
libsemanage-3.6-3.fc40.aarch64
libsepol-3.6-3.fc40.aarch64
libsmartcols-2.40.1-1.fc41.aarch64
libssh-0.10.6-6.fc41.aarch64
libssh-config-0.10.6-6.fc41.noarch
libstdc++-14.1.1-4.fc41.aarch64
libtasn1-4.19.0-6.fc40.aarch64
libtirpc-1.3.4-1.rc3.fc41.aarch64
libtool-ltdl-2.4.7-10.fc40.aarch64
libunistring-1.1-7.fc41.aarch64
libutempter-1.2.1-13.fc40.aarch64
libuuid-2.40.1-1.fc41.aarch64
libverto-0.3.2-8.fc40.aarch64
libxcrypt-4.4.36-5.fc40.aarch64
libxml2-2.12.7-1.fc41.aarch64
libzstd-1.5.6-1.fc41.aarch64
lua-libs-5.4.6-5.fc40.aarch64
lua-srpm-macros-1-13.fc40.noarch
lz4-libs-1.9.4-6.fc40.aarch64
mpfr-4.2.1-4.fc41.aarch64
ncurses-base-6.4-12.20240127.fc40.noarch
ncurses-libs-6.4-12.20240127.fc40.aarch64
ocaml-srpm-macros-10-1.fc41.noarch
openblas-srpm-macros-2-17.fc41.noarch
openldap-2.6.8-1.fc41.aarch64
openssl-libs-3.2.1-6.fc41.aarch64
p11-kit-0.25.3-4.fc40.aarch64
p11-kit-trust-0.25.3-4.fc40.aarch64
package-notes-srpm-macros-0.5-11.fc40.noarch
pam-1.6.1-3.fc41.aarch64
pam-libs-1.6.1-3.fc41.aarch64
patch-2.7.6-24.fc40.aarch64
pcre2-10.43-2.fc41.1.aarch64
pcre2-syntax-10.43-2.fc41.1.noarch
perl-srpm-macros-1-53.fc40.noarch
pkgconf-2.1.1-1.fc41.aarch64
pkgconf-m4-2.1.1-1.fc41.noarch
pkgconf-pkg-config-2.1.1-1.fc41.aarch64
popt-1.19-6.fc40.aarch64
publicsuffix-list-dafsa-20240107-3.fc40.noarch
pyproject-srpm-macros-1.12.0-1.fc40.noarch
python-srpm-macros-3.12-9.fc41.noarch
qt5-srpm-macros-5.15.13-1.fc41.noarch
qt6-srpm-macros-6.7.1-1.fc41.noarch
readline-8.2-8.fc40.aarch64
redhat-rpm-config-291-1.fc41.noarch
rpm-4.19.91-4.fc41.aarch64
rpm-build-4.19.91-4.fc41.aarch64
rpm-build-libs-4.19.91-4.fc41.aarch64
rpm-libs-4.19.91-4.fc41.aarch64
rpm-sequoia-1.6.0-3.fc41.aarch64
rust-srpm-macros-26.3-1.fc41.noarch
sed-4.9-1.fc40.aarch64
setup-2.15.0-3.fc41.noarch
shadow-utils-4.15.1-5.fc41.aarch64
sqlite-libs-3.45.3-1.fc41.aarch64
systemd-libs-256~rc3-3.fc41.aarch64
tar-1.35-3.fc40.aarch64
unzip-6.0-63.fc40.aarch64
util-linux-2.40.1-1.fc41.aarch64
util-linux-core-2.40.1-1.fc41.aarch64
which-2.21-41.fc40.aarch64
xxhash-libs-0.8.2-2.fc40.aarch64
xz-5.4.6-3.fc41.aarch64
xz-libs-5.4.6-3.fc41.aarch64
zig-srpm-macros-1-2.fc40.noarch
zip-3.0-40.fc40.aarch64
zlib-ng-compat-2.1.6-4.fc41.aarch64
zstd-1.5.6-1.fc41.aarch64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1706140800
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-19.fc41.src.rpm
Finish: rpmbuild -bs
cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-aarch64-1717089561.423908/root/var/log’: No such file or directory
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-aarch64-1717089561.423908/root/var/log/dnf5.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-yttrw1zh/mmseq/mmseq.spec) Config(child) 0 minutes 23 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-19.fc41.src.rpm)  Config(fedora-rawhide-aarch64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1717089561.423908/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1717089561.423908/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1717089561.423908/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.91-4.fc41.aarch64
  rpm-sequoia-1.6.0-3.fc41.aarch64
  dnf5-5.2.2.0-1.fc41.aarch64
  dnf5-plugins-5.2.2.0-1.fc41.aarch64
Finish: chroot init
Start: build phase for mmseq-1.0.11-19.fc41.src.rpm
Start: build setup for mmseq-1.0.11-19.fc41.src.rpm
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1706140800
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-19.fc41.src.rpm
Updating and loading repositories:
 Additional repo http_kojipkgs_fedorapr 100% |  67.6 KiB/s |   4.1 KiB |  00m00s
 Copr repository                        100% | 109.8 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% |  76.5 KiB/s |  11.6 KiB |  00m00s
Repositories loaded.
Package                      Arch    Version              Repository                                                         Size
Installing:
 armadillo-devel             aarch64 12.8.1-1.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.3 MiB
 boost-devel                 aarch64 1.83.0-5.fc41        copr_base                                                     143.0 MiB
 flexiblas-devel             aarch64 3.4.4-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.0 MiB
 gcc-c++                     aarch64 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.0 MiB
 gsl-devel                   aarch64 2.7.1-8.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 htslib-devel                aarch64 1.15.1-5.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 411.0 KiB
 make                        aarch64 1:4.4.1-6.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 perl-generators             noarch  1.16-5.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  21.8 KiB
 zlib-ng-compat-devel        aarch64 2.1.6-4.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.4 KiB
Installing dependencies:
 SuperLU                     aarch64 6.0.1-5.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 522.3 KiB
 SuperLU-devel               aarch64 6.0.1-5.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 102.2 KiB
 add-determinism             aarch64 0.2.0-9.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 annobin-docs                noarch  12.54-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  96.2 KiB
 annobin-plugin-gcc          aarch64 12.54-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 armadillo                   aarch64 12.8.1-1.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 210.3 KiB
 arpack                      aarch64 3.9.1-3.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 809.9 KiB
 arpack-devel                aarch64 3.9.1-3.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  69.1 KiB
 autoconf                    noarch  2.72-2.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.8 MiB
 automake                    noarch  1.16.5-16.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 boost                       aarch64 1.83.0-5.fc41        copr_base                                                       1.3 KiB
 boost-atomic                aarch64 1.83.0-5.fc41        copr_base                                                     196.9 KiB
 boost-chrono                aarch64 1.83.0-5.fc41        copr_base                                                     197.4 KiB
 boost-container             aarch64 1.83.0-5.fc41        copr_base                                                     197.4 KiB
 boost-context               aarch64 1.83.0-5.fc41        copr_base                                                     196.4 KiB
 boost-contract              aarch64 1.83.0-5.fc41        copr_base                                                     198.6 KiB
 boost-coroutine             aarch64 1.83.0-5.fc41        copr_base                                                     197.1 KiB
 boost-date-time             aarch64 1.83.0-5.fc41        copr_base                                                     196.3 KiB
 boost-fiber                 aarch64 1.83.0-5.fc41        copr_base                                                     198.3 KiB
 boost-filesystem            aarch64 1.83.0-5.fc41        copr_base                                                     262.9 KiB
 boost-graph                 aarch64 1.83.0-5.fc41        copr_base                                                     461.3 KiB
 boost-iostreams             aarch64 1.83.0-5.fc41        copr_base                                                     198.2 KiB
 boost-json                  aarch64 1.83.0-5.fc41        copr_base                                                     392.1 KiB
 boost-locale                aarch64 1.83.0-5.fc41        copr_base                                                     659.3 KiB
 boost-log                   aarch64 1.83.0-5.fc41        copr_base                                                       1.7 MiB
 boost-math                  aarch64 1.83.0-5.fc41        copr_base                                                       1.5 MiB
 boost-nowide                aarch64 1.83.0-5.fc41        copr_base                                                     196.9 KiB
 boost-numpy3                aarch64 1.83.0-5.fc41        copr_base                                                     197.3 KiB
 boost-program-options       aarch64 1.83.0-5.fc41        copr_base                                                     331.1 KiB
 boost-python3               aarch64 1.83.0-5.fc41        copr_base                                                     332.5 KiB
 boost-random                aarch64 1.83.0-5.fc41        copr_base                                                     197.5 KiB
 boost-regex                 aarch64 1.83.0-5.fc41        copr_base                                                     330.2 KiB
 boost-serialization         aarch64 1.83.0-5.fc41        copr_base                                                     659.4 KiB
 boost-stacktrace            aarch64 1.83.0-5.fc41        copr_base                                                     587.8 KiB
 boost-system                aarch64 1.83.0-5.fc41        copr_base                                                     196.3 KiB
 boost-test                  aarch64 1.83.0-5.fc41        copr_base                                                     792.3 KiB
 boost-thread                aarch64 1.83.0-5.fc41        copr_base                                                     264.3 KiB
 boost-timer                 aarch64 1.83.0-5.fc41        copr_base                                                     197.0 KiB
 boost-type_erasure          aarch64 1.83.0-5.fc41        copr_base                                                     198.0 KiB
 boost-wave                  aarch64 1.83.0-5.fc41        copr_base                                                     726.1 KiB
 cmake-filesystem            aarch64 3.28.3-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 cpp                         aarch64 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  31.8 MiB
 emacs-filesystem            noarch  1:30.0-2.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 expat                       aarch64 2.6.2-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 536.7 KiB
 flexiblas                   aarch64 3.4.4-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  48.5 KiB
 flexiblas-netlib            aarch64 3.4.4-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.6 MiB
 flexiblas-netlib64          aarch64 3.4.4-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.5 MiB
 flexiblas-openblas-openmp   aarch64 3.4.4-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 195.3 KiB
 flexiblas-openblas-openmp64 aarch64 3.4.4-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 195.4 KiB
 gc                          aarch64 8.2.2-6.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 850.3 KiB
 gcc                         aarch64 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  93.6 MiB
 gcc-gfortran                aarch64 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  33.9 MiB
 gcc-plugin-annobin          aarch64 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 197.0 KiB
 glibc-devel                 aarch64 2.39.9000-18.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 MiB
 groff-base                  aarch64 1.23.0-6.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.4 MiB
 gsl                         aarch64 2.7.1-8.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.8 MiB
 guile30                     aarch64 3.0.9-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  53.2 MiB
 hdf5                        aarch64 1.12.1-15.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.4 MiB
 hdf5-devel                  aarch64 1.12.1-15.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.8 MiB
 htslib                      aarch64 1.15.1-5.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 kernel-headers              aarch64 6.10.0-0.rc1.17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.2 MiB
 libaec                      aarch64 1.1.2-1.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 410.0 KiB
 libaec-devel                aarch64 1.1.2-1.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.9 KiB
 libasan                     aarch64 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 libatomic                   aarch64 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 196.9 KiB
 libb2                       aarch64 0.98.1-11.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 202.1 KiB
 libgfortran                 aarch64 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 libicu                      aarch64 74.2-1.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.9 MiB
 libicu-devel                aarch64 74.2-1.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.7 MiB
 libmpc                      aarch64 1.3.1-5.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 280.7 KiB
 libstdc++-devel             aarch64 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.1 MiB
 libubsan                    aarch64 14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 539.3 KiB
 libxcrypt-devel             aarch64 4.4.36-5.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  30.3 KiB
 m4                          aarch64 1.4.19-9.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 668.5 KiB
 metis                       aarch64 5.1.0.3-5.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.0 MiB
 mpdecimal                   aarch64 2.5.1-9.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 328.7 KiB
 ncurses                     aarch64 6.4-12.20240127.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 openblas                    aarch64 0.3.26-4.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  96.0 KiB
 openblas-openmp             aarch64 0.3.26-4.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.5 MiB
 openblas-openmp64           aarch64 0.3.26-4.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.3 MiB
 perl-AutoLoader             noarch  5.74-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  20.5 KiB
 perl-B                      aarch64 1.88-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 604.3 KiB
 perl-Carp                   noarch  1.54-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  46.5 KiB
 perl-Class-Struct           noarch  0.68-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  25.4 KiB
 perl-Data-Dumper            aarch64 2.188-503.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 263.6 KiB
 perl-Digest                 noarch  1.20-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.2 KiB
 perl-Digest-MD5             aarch64 2.59-3.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 231.7 KiB
 perl-DynaLoader             aarch64 1.54-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  32.1 KiB
 perl-Encode                 aarch64 4:3.21-505.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  10.9 MiB
 perl-Errno                  aarch64 1.37-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.4 KiB
 perl-Exporter               noarch  5.78-3.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  54.2 KiB
 perl-Fcntl                  aarch64 1.15-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 200.6 KiB
 perl-Fedora-VSP             noarch  0.001-34.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.6 KiB
 perl-File-Basename          noarch  2.86-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  14.0 KiB
 perl-File-Compare           noarch  1.100.700-507.fc41   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.5 KiB
 perl-File-Copy              noarch  2.41-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.6 KiB
 perl-File-Find              noarch  1.43-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  41.9 KiB
 perl-File-Path              noarch  2.18-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  63.5 KiB
 perl-File-Temp              noarch  1:0.231.100-503.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 162.3 KiB
 perl-File-stat              noarch  1.13-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.7 KiB
 perl-FileHandle             noarch  2.05-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.3 KiB
 perl-Getopt-Long            noarch  1:2.57-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.1 KiB
 perl-Getopt-Std             noarch  1.13-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.1 KiB
 perl-HTTP-Tiny              noarch  0.088-5.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 152.1 KiB
 perl-IO                     aarch64 1.52-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 319.0 KiB
 perl-IO-Socket-IP           noarch  0.42-2.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  98.6 KiB
 perl-IO-Socket-SSL          noarch  2.085-1.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 685.0 KiB
 perl-IPC-Open3              noarch  1.22-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.5 KiB
 perl-MIME-Base64            aarch64 3.16-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 222.0 KiB
 perl-Mozilla-CA             noarch  20240313-1.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.5 KiB
 perl-Net-SSLeay             aarch64 1.94-3.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 perl-POSIX                  aarch64 2.13-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 325.0 KiB
 perl-PathTools              aarch64 3.89-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 351.6 KiB
 perl-Pod-Escapes            noarch  1:1.07-503.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  24.9 KiB
 perl-Pod-Perldoc            noarch  3.28.01-503.fc40     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 163.1 KiB
 perl-Pod-Simple             noarch  1:3.45-6.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 559.8 KiB
 perl-Pod-Usage              noarch  4:2.03-504.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  84.7 KiB
 perl-Scalar-List-Utils      aarch64 5:1.63-503.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.4 KiB
 perl-SelectSaver            noarch  1.02-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 perl-Socket                 aarch64 4:2.038-1.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 272.0 KiB
 perl-Storable               aarch64 1:3.32-502.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 372.3 KiB
 perl-Symbol                 noarch  1.09-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.8 KiB
 perl-Term-ANSIColor         noarch  5.01-504.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  97.5 KiB
 perl-Term-Cap               noarch  1.18-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.3 KiB
 perl-Text-ParseWords        noarch  3.31-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.5 KiB
 perl-Text-Tabs+Wrap         noarch  2024.001-1.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.5 KiB
 perl-Thread-Queue           noarch  3.14-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.8 KiB
 perl-Time-Local             noarch  2:1.350-5.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  68.9 KiB
 perl-URI                    noarch  5.28-1.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 240.2 KiB
 perl-base                   noarch  2.27-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.5 KiB
 perl-constant               noarch  1.33-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  26.2 KiB
 perl-if                     noarch  0.61.000-507.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.8 KiB
 perl-interpreter            aarch64 4:5.38.2-507.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 299.7 KiB
 perl-libnet                 noarch  3.15-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 289.0 KiB
 perl-libs                   aarch64 4:5.38.2-507.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.3 MiB
 perl-locale                 noarch  1.10-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.2 KiB
 perl-macros                 noarch  4:5.38.2-507.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.5 KiB
 perl-mro                    aarch64 1.28-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.6 KiB
 perl-overload               noarch  1.37-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  71.5 KiB
 perl-overloading            noarch  0.02-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.8 KiB
 perl-parent                 noarch  1:0.241-502.fc40     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.7 KiB
 perl-podlators              noarch  1:5.01-502.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 308.1 KiB
 perl-threads                aarch64 1:2.36-503.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 263.1 KiB
 perl-threads-shared         aarch64 1.68-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 231.7 KiB
 perl-vars                   noarch  1.05-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.9 KiB
 python-pip-wheel            noarch  24.0-2.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 python3                     aarch64 3.12.3-2.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 211.4 KiB
 python3-libs                aarch64 3.12.3-2.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  51.2 MiB
 python3-numpy               aarch64 1:1.26.4-5.fc41      copr_base                                                      41.6 MiB
 tzdata                      noarch  2024a-8.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB

Transaction Summary:
 Installing:      159 packages

Total size of inbound packages is 161 MiB. Need to download 26 MiB.
After this operation 718 MiB will be used (install 718 MiB, remove 0 B).
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[136/159] perl-Digest-0:1.20-502.fc40.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[137/159] flexiblas-devel-0:3.4.4-1.fc4 100% |   1.1 MiB/s | 111.7 KiB |  00m00s
[138/159] htslib-devel-0:1.15.1-5.fc40. 100% | 852.9 KiB/s |  98.9 KiB |  00m00s
[139/159] perl-generators-0:1.16-5.fc40 100% | 687.1 KiB/s |  16.5 KiB |  00m00s
[140/159] zlib-ng-compat-devel-0:2.1.6- 100% |   1.4 MiB/s |  36.2 KiB |  00m00s
[141/159] armadillo-devel-0:12.8.1-1.fc 100% |  13.8 MiB/s |   2.0 MiB |  00m00s
[142/159] perl-Fedora-VSP-0:0.001-34.fc 100% | 888.9 KiB/s |  23.1 KiB |  00m00s
[143/159] perl-macros-4:5.38.2-507.fc41 100% | 566.3 KiB/s |  12.5 KiB |  00m00s
[144/159] flexiblas-netlib64-0:3.4.4-1. 100% |  88.6 MiB/s |   2.7 MiB |  00m00s
[145/159] SuperLU-devel-0:6.0.1-5.fc41. 100% |   1.2 MiB/s |  27.1 KiB |  00m00s
[146/159] armadillo-0:12.8.1-1.fc41.aar 100% |   1.6 MiB/s |  31.0 KiB |  00m00s
[147/159] htslib-0:1.15.1-5.fc40.aarch6 100% |   6.5 MiB/s | 482.9 KiB |  00m00s
[148/159] hdf5-devel-0:1.12.1-15.fc40.a 100% |  51.2 MiB/s |   1.3 MiB |  00m00s
[149/159] arpack-devel-0:3.9.1-3.fc40.a 100% | 532.9 KiB/s |  21.8 KiB |  00m00s
[150/159] cmake-filesystem-0:3.28.3-4.f 100% |   1.2 MiB/s |  17.8 KiB |  00m00s
[151/159] SuperLU-0:6.0.1-5.fc41.aarch6 100% |   7.1 MiB/s | 175.0 KiB |  00m00s
[152/159] metis-0:5.1.0.3-5.fc40.aarch6 100% |  19.8 MiB/s | 568.5 KiB |  00m00s
[153/159] arpack-0:3.9.1-3.fc40.aarch64 100% |   3.0 MiB/s | 181.8 KiB |  00m00s
[154/159] gcc-gfortran-0:14.1.1-4.fc41. 100% | 175.8 MiB/s |  12.1 MiB |  00m00s
[155/159] libaec-devel-0:1.1.2-1.fc40.a 100% | 393.9 KiB/s |  11.8 KiB |  00m00s
[156/159] hdf5-0:1.12.1-15.fc40.aarch64 100% |  45.1 MiB/s |   2.1 MiB |  00m00s
[157/159] flexiblas-openblas-openmp64-0 100% | 827.5 KiB/s |  16.5 KiB |  00m00s
[158/159] libaec-0:1.1.2-1.fc40.aarch64 100% |   1.4 MiB/s |  36.4 KiB |  00m00s
[159/159] openblas-openmp64-0:0.3.26-4. 100% | 110.3 MiB/s |   3.8 MiB |  00m00s
--------------------------------------------------------------------------------
[159/159] Total                         100% |  52.4 MiB/s |  25.8 MiB |  00m00s
Running transaction
[  1/161] Verify package files          100% | 268.0   B/s | 159.0   B |  00m01s
[  2/161] Prepare transaction           100% | 832.0   B/s | 159.0   B |  00m00s
[  3/161] Installing boost-system-0:1.8 100% | 192.7 MiB/s | 197.3 KiB |  00m00s
[  4/161] Installing libgfortran-0:14.1 100% | 304.4 MiB/s |   1.5 MiB |  00m00s
[  5/161] Installing boost-chrono-0:1.8 100% | 193.8 MiB/s | 198.4 KiB |  00m00s
[  6/161] Installing boost-thread-0:1.8 100% | 259.1 MiB/s | 265.3 KiB |  00m00s
[  7/161] Installing libicu-0:74.2-1.fc 100% | 320.6 MiB/s |  35.9 MiB |  00m00s
[  8/161] Installing libmpc-0:1.3.1-5.f 100% | 137.8 MiB/s | 282.2 KiB |  00m00s
[  9/161] Installing boost-regex-0:1.83 100% | 161.7 MiB/s | 331.2 KiB |  00m00s
[ 10/161] Installing boost-context-0:1. 100% | 192.8 MiB/s | 197.4 KiB |  00m00s
[ 11/161] Installing boost-atomic-0:1.8 100% | 193.2 MiB/s | 197.9 KiB |  00m00s
[ 12/161] Installing boost-filesystem-0 100% | 257.7 MiB/s | 263.9 KiB |  00m00s
[ 13/161] Installing openblas-0:0.3.26- 100% |  95.5 MiB/s |  97.8 KiB |  00m00s
[ 14/161] Installing libaec-0:1.1.2-1.f 100% | 134.2 MiB/s | 412.4 KiB |  00m00s
[ 15/161] Installing libstdc++-devel-0: 100% | 267.2 MiB/s |  15.2 MiB |  00m00s
[ 16/161] Installing boost-date-time-0: 100% | 192.7 MiB/s | 197.3 KiB |  00m00s
[ 17/161] Installing boost-container-0: 100% | 193.8 MiB/s | 198.4 KiB |  00m00s
[ 18/161] Installing boost-json-0:1.83. 100% | 191.9 MiB/s | 393.1 KiB |  00m00s
[ 19/161] Installing boost-wave-0:1.83. 100% | 236.7 MiB/s | 727.1 KiB |  00m00s
[ 20/161] Installing hdf5-0:1.12.1-15.f 100% | 366.1 MiB/s |  12.4 MiB |  00m00s
[ 21/161] Installing libaec-devel-0:1.1 100% |  12.6 MiB/s |  12.9 KiB |  00m00s
[ 22/161] Installing openblas-openmp64- 100% | 394.6 MiB/s |  19.3 MiB |  00m00s
[ 23/161] Installing openblas-openmp-0: 100% | 397.1 MiB/s |  19.5 MiB |  00m00s
[ 24/161] Installing flexiblas-netlib-0 100% | 311.3 MiB/s |   9.6 MiB |  00m00s
[ 25/161] Installing flexiblas-0:3.4.4- 100% |  48.5 MiB/s |  49.7 KiB |  00m00s
[ 26/161] Installing flexiblas-openblas 100% | 191.6 MiB/s | 196.2 KiB |  00m00s
[ 27/161] Installing flexiblas-netlib64 100% | 305.2 MiB/s |   9.5 MiB |  00m00s
[ 28/161] Installing flexiblas-openblas 100% | 191.6 MiB/s | 196.2 KiB |  00m00s
[ 29/161] Installing arpack-0:3.9.1-3.f 100% | 264.3 MiB/s | 812.0 KiB |  00m00s
[ 30/161] Installing arpack-devel-0:3.9 100% |  70.4 MiB/s |  72.1 KiB |  00m00s
[ 31/161] Installing flexiblas-devel-0: 100% | 557.5 MiB/s |   5.0 MiB |  00m00s
[ 32/161] Installing boost-fiber-0:1.83 100% | 194.7 MiB/s | 199.3 KiB |  00m00s
[ 33/161] Installing boost-log-0:1.83.0 100% | 279.1 MiB/s |   1.7 MiB |  00m00s
[ 34/161] Installing boost-coroutine-0: 100% | 193.5 MiB/s | 198.1 KiB |  00m00s
[ 35/161] Installing boost-graph-0:1.83 100% | 225.7 MiB/s | 462.3 KiB |  00m00s
[ 36/161] Installing cpp-0:14.1.1-4.fc4 100% | 264.9 MiB/s |  31.8 MiB |  00m00s
[ 37/161] Installing boost-locale-0:1.8 100% | 161.2 MiB/s | 660.3 KiB |  00m00s
[ 38/161] Installing libicu-devel-0:74. 100% | 200.6 MiB/s |   5.8 MiB |  00m00s
[ 39/161] Installing boost-type_erasure 100% | 194.4 MiB/s | 199.0 KiB |  00m00s
[ 40/161] Installing boost-timer-0:1.83 100% | 193.4 MiB/s | 198.0 KiB |  00m00s
[ 41/161] Installing ncurses-0:6.4-12.2 100% | 120.2 MiB/s |   1.7 MiB |  00m00s
>>> Running pre-install scriptlet: groff-base-0:1.23.0-6.fc40.aarch64
>>> Stop pre-install scriptlet: groff-base-0:1.23.0-6.fc40.aarch64
[ 42/161] Installing groff-base-0:1.23. 100% | 173.7 MiB/s |   5.4 MiB |  00m00s
>>> Running post-install scriptlet: groff-base-0:1.23.0-6.fc40.aarch64
>>> Stop post-install scriptlet: groff-base-0:1.23.0-6.fc40.aarch64
[ 43/161] Installing perl-Digest-0:1.20 100% |  18.0 MiB/s |  37.0 KiB |  00m00s
[ 44/161] Installing perl-B-0:1.88-507. 100% | 197.8 MiB/s | 607.7 KiB |  00m00s
[ 45/161] Installing perl-FileHandle-0: 100% |   9.5 MiB/s |   9.8 KiB |  00m00s
[ 46/161] Installing perl-Digest-MD5-0: 100% | 114.1 MiB/s | 233.6 KiB |  00m00s
[ 47/161] Installing perl-Data-Dumper-0 100% | 129.7 MiB/s | 265.5 KiB |  00m00s
[ 48/161] Installing perl-libnet-0:3.15 100% |  95.8 MiB/s | 294.3 KiB |  00m00s
[ 49/161] Installing perl-AutoLoader-0: 100% |   0.0   B/s |  20.9 KiB |  00m00s
[ 50/161] Installing perl-IO-Socket-IP- 100% |  49.0 MiB/s | 100.4 KiB |  00m00s
[ 51/161] Installing perl-URI-0:5.28-1. 100% |  61.5 MiB/s | 251.8 KiB |  00m00s
[ 52/161] Installing perl-locale-0:1.10 100% |   0.0   B/s |   6.6 KiB |  00m00s
[ 53/161] Installing perl-File-Path-0:2 100% |  63.0 MiB/s |  64.5 KiB |  00m00s
[ 54/161] Installing perl-if-0:0.61.000 100% |   0.0   B/s |   6.2 KiB |  00m00s
[ 55/161] Installing perl-Mozilla-CA-0: 100% |  10.2 MiB/s |  10.5 KiB |  00m00s
[ 56/161] Installing perl-Time-Local-2: 100% |  68.9 MiB/s |  70.5 KiB |  00m00s
[ 57/161] Installing perl-Pod-Escapes-1 100% |  25.3 MiB/s |  25.9 KiB |  00m00s
[ 58/161] Installing perl-Text-Tabs+Wra 100% |  23.3 MiB/s |  23.8 KiB |  00m00s
[ 59/161] Installing perl-Net-SSLeay-0: 100% | 179.1 MiB/s |   1.4 MiB |  00m00s
[ 60/161] Installing perl-IO-Socket-SSL 100% | 168.2 MiB/s | 689.0 KiB |  00m00s
[ 61/161] Installing perl-Class-Struct- 100% |  25.3 MiB/s |  25.9 KiB |  00m00s
[ 62/161] Installing perl-POSIX-0:2.13- 100% | 159.3 MiB/s | 326.3 KiB |  00m00s
[ 63/161] Installing perl-File-Temp-1:0 100% | 160.2 MiB/s | 164.0 KiB |  00m00s
[ 64/161] Installing perl-IPC-Open3-0:1 100% |  22.7 MiB/s |  23.3 KiB |  00m00s
[ 65/161] Installing perl-Term-ANSIColo 100% |  96.8 MiB/s |  99.1 KiB |  00m00s
[ 66/161] Installing perl-Term-Cap-0:1. 100% |  29.8 MiB/s |  30.5 KiB |  00m00s
[ 67/161] Installing perl-Pod-Simple-1: 100% | 139.0 MiB/s | 569.4 KiB |  00m00s
[ 68/161] Installing perl-HTTP-Tiny-0:0 100% |  75.3 MiB/s | 154.2 KiB |  00m00s
[ 69/161] Installing perl-Socket-4:2.03 100% | 133.8 MiB/s | 274.0 KiB |  00m00s
[ 70/161] Installing perl-File-stat-0:1 100% |  12.9 MiB/s |  13.2 KiB |  00m00s
[ 71/161] Installing perl-SelectSaver-0 100% |   0.0   B/s |   2.6 KiB |  00m00s
[ 72/161] Installing perl-Symbol-0:1.09 100% |   0.0   B/s |   7.2 KiB |  00m00s
[ 73/161] Installing perl-podlators-1:5 100% | 152.4 MiB/s | 312.1 KiB |  00m00s
[ 74/161] Installing perl-Pod-Perldoc-0 100% |  82.3 MiB/s | 168.6 KiB |  00m00s
[ 75/161] Installing perl-Text-ParseWor 100% |  14.2 MiB/s |  14.5 KiB |  00m00s
[ 76/161] Installing perl-mro-0:1.28-50 100% | 205.8 MiB/s | 210.7 KiB |  00m00s
[ 77/161] Installing perl-overloading-0 100% |   5.4 MiB/s |   5.5 KiB |  00m00s
[ 78/161] Installing perl-Fcntl-0:1.15- 100% | 197.0 MiB/s | 201.7 KiB |  00m00s
[ 79/161] Installing perl-IO-0:1.52-507 100% | 157.8 MiB/s | 323.3 KiB |  00m00s
[ 80/161] Installing perl-base-0:2.27-5 100% |   0.0   B/s |  12.9 KiB |  00m00s
[ 81/161] Installing perl-Pod-Usage-4:2 100% |  84.2 MiB/s |  86.3 KiB |  00m00s
[ 82/161] Installing perl-Errno-0:1.37- 100% |   0.0   B/s |   8.8 KiB |  00m00s
[ 83/161] Installing perl-constant-0:1. 100% |  26.7 MiB/s |  27.4 KiB |  00m00s
[ 84/161] Installing perl-Scalar-List-U 100% | 137.1 MiB/s | 280.7 KiB |  00m00s
[ 85/161] Installing perl-overload-0:1. 100% |  70.3 MiB/s |  71.9 KiB |  00m00s
[ 86/161] Installing perl-parent-1:0.24 100% |  10.2 MiB/s |  10.4 KiB |  00m00s
[ 87/161] Installing perl-vars-0:1.05-5 100% |   0.0   B/s |   4.3 KiB |  00m00s
[ 88/161] Installing perl-Getopt-Std-0: 100% |   0.0   B/s |  11.6 KiB |  00m00s
[ 89/161] Installing perl-MIME-Base64-0 100% | 219.0 MiB/s | 224.3 KiB |  00m00s
[ 90/161] Installing perl-Storable-1:3. 100% | 182.6 MiB/s | 373.9 KiB |  00m00s
[ 91/161] Installing perl-Getopt-Long-1 100% | 143.4 MiB/s | 146.9 KiB |  00m00s
[ 92/161] Installing perl-File-Basename 100% |   0.0   B/s |  14.6 KiB |  00m00s
[ 93/161] Installing perl-Carp-0:1.54-5 100% |  46.5 MiB/s |  47.7 KiB |  00m00s
[ 94/161] Installing perl-Exporter-0:5. 100% |  54.2 MiB/s |  55.5 KiB |  00m00s
[ 95/161] Installing perl-PathTools-0:3 100% | 115.9 MiB/s | 356.1 KiB |  00m00s
[ 96/161] Installing perl-DynaLoader-0: 100% |  31.7 MiB/s |  32.5 KiB |  00m00s
[ 97/161] Installing perl-Encode-4:3.21 100% | 351.8 MiB/s |  10.9 MiB |  00m00s
[ 98/161] Installing perl-libs-4:5.38.2 100% | 214.3 MiB/s |  11.4 MiB |  00m00s
[ 99/161] Installing perl-interpreter-4 100% | 147.1 MiB/s | 301.4 KiB |  00m00s
[100/161] Installing perl-threads-1:2.3 100% | 129.5 MiB/s | 265.1 KiB |  00m00s
[101/161] Installing perl-threads-share 100% | 114.2 MiB/s | 233.9 KiB |  00m00s
[102/161] Installing perl-Thread-Queue- 100% |  29.6 MiB/s |  30.3 KiB |  00m00s
[103/161] Installing perl-macros-4:5.38 100% |   0.0   B/s |   5.8 KiB |  00m00s
[104/161] Installing perl-Fedora-VSP-0: 100% |  39.6 MiB/s |  40.5 KiB |  00m00s
[105/161] Installing perl-File-Compare- 100% |   0.0   B/s |   6.0 KiB |  00m00s
[106/161] Installing perl-File-Copy-0:2 100% |   0.0   B/s |  20.2 KiB |  00m00s
[107/161] Installing perl-File-Find-0:1 100% |  20.7 MiB/s |  42.4 KiB |  00m00s
[108/161] Installing kernel-headers-0:6 100% | 137.6 MiB/s |   6.3 MiB |  00m00s
[109/161] Installing libxcrypt-devel-0: 100% |  15.9 MiB/s |  32.6 KiB |  00m00s
[110/161] Installing glibc-devel-0:2.39 100% | 103.7 MiB/s |   2.3 MiB |  00m00s
[111/161] Installing tzdata-0:2024a-8.f 100% |  38.8 MiB/s |   1.9 MiB |  00m00s
[112/161] Installing python-pip-wheel-0 100% | 509.3 MiB/s |   1.5 MiB |  00m00s
[113/161] Installing mpdecimal-0:2.5.1- 100% | 161.0 MiB/s | 329.8 KiB |  00m00s
[114/161] Installing libb2-0:0.98.1-11. 100% | 198.5 MiB/s | 203.2 KiB |  00m00s
[115/161] Installing expat-0:2.6.2-1.fc 100% |  87.7 MiB/s | 538.8 KiB |  00m00s
[116/161] Installing python3-libs-0:3.1 100% | 257.9 MiB/s |  51.6 MiB |  00m00s
[117/161] Installing python3-0:3.12.3-2 100% | 208.2 MiB/s | 213.1 KiB |  00m00s
[118/161] Installing boost-python3-0:1. 100% |  65.1 MiB/s | 333.5 KiB |  00m00s
[119/161] Installing python3-numpy-1:1. 100% | 282.9 MiB/s |  41.9 MiB |  00m00s
[120/161] Installing boost-numpy3-0:1.8 100% | 193.7 MiB/s | 198.3 KiB |  00m00s
[121/161] Installing metis-0:5.1.0.3-5. 100% | 341.3 MiB/s |   2.0 MiB |  00m00s
[122/161] Installing SuperLU-0:6.0.1-5. 100% | 255.6 MiB/s | 523.4 KiB |  00m00s
[123/161] Installing armadillo-0:12.8.1 100% | 206.6 MiB/s | 211.6 KiB |  00m00s
[124/161] Installing cmake-filesystem-0 100% |   3.5 MiB/s |   7.1 KiB |  00m00s
[125/161] Installing SuperLU-devel-0:6. 100% | 102.6 MiB/s | 105.1 KiB |  00m00s
[126/161] Installing annobin-docs-0:12. 100% |  95.0 MiB/s |  97.3 KiB |  00m00s
[127/161] Installing m4-0:1.4.19-9.fc40 100% | 131.8 MiB/s | 674.9 KiB |  00m00s
[128/161] Installing emacs-filesystem-1 100% | 531.2 KiB/s | 544.0   B |  00m00s
[129/161] Installing autoconf-0:2.72-2. 100% | 279.8 MiB/s |   2.8 MiB |  00m00s
[130/161] Installing automake-0:1.16.5- 100% | 195.8 MiB/s |   1.8 MiB |  00m00s
[131/161] Installing libubsan-0:14.1.1- 100% | 263.7 MiB/s | 540.1 KiB |  00m00s
[132/161] Installing libatomic-0:14.1.1 100% | 193.1 MiB/s | 197.8 KiB |  00m00s
[133/161] Installing libasan-0:14.1.1-4 100% | 320.5 MiB/s |   1.6 MiB |  00m00s
[134/161] Installing gsl-0:2.7.1-8.fc41 100% | 317.4 MiB/s |   3.8 MiB |  00m00s
[135/161] Installing gc-0:8.2.2-6.fc40. 100% | 208.2 MiB/s | 852.9 KiB |  00m00s
[136/161] Installing guile30-0:3.0.9-1. 100% | 335.2 MiB/s |  53.3 MiB |  00m00s
[137/161] Installing make-1:4.4.1-6.fc4 100% | 185.1 MiB/s |   1.9 MiB |  00m00s
[138/161] Installing gcc-0:14.1.1-4.fc4 100% | 299.1 MiB/s |  93.6 MiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:291-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:291-1.fc41.noarch
[139/161] Installing gcc-gfortran-0:14. 100% | 258.9 MiB/s |  33.9 MiB |  00m00s
[140/161] Installing htslib-0:1.15.1-5. 100% | 299.7 MiB/s |   1.8 MiB |  00m00s
[141/161] Installing boost-test-0:1.83. 100% | 258.4 MiB/s | 793.8 KiB |  00m00s
[142/161] Installing boost-stacktrace-0 100% | 287.9 MiB/s | 589.7 KiB |  00m00s
[143/161] Installing boost-serializatio 100% | 215.1 MiB/s | 660.9 KiB |  00m00s
[144/161] Installing boost-random-0:1.8 100% | 193.9 MiB/s | 198.5 KiB |  00m00s
[145/161] Installing boost-program-opti 100% | 162.2 MiB/s | 332.1 KiB |  00m00s
[146/161] Installing boost-nowide-0:1.8 100% | 193.1 MiB/s | 197.7 KiB |  00m00s
[147/161] Installing boost-math-0:1.83. 100% | 294.3 MiB/s |   1.5 MiB |  00m00s
[148/161] Installing boost-iostreams-0: 100% | 194.5 MiB/s | 199.2 KiB |  00m00s
[149/161] Installing boost-contract-0:1 100% | 195.0 MiB/s | 199.6 KiB |  00m00s
[150/161] Installing boost-0:1.83.0-5.f 100% |   0.0   B/s |   1.7 KiB |  00m00s
[151/161] Installing zlib-ng-compat-dev 100% | 102.0 MiB/s | 104.5 KiB |  00m00s
[152/161] Installing hdf5-devel-0:1.12. 100% | 227.3 MiB/s |   3.9 MiB |  00m00s
[153/161] Installing armadillo-devel-0: 100% | 135.2 MiB/s |   7.4 MiB |  00m00s
[154/161] Installing boost-devel-0:1.83 100% | 190.0 MiB/s | 145.8 MiB |  00m01s
[155/161] Installing htslib-devel-0:1.1 100% | 135.3 MiB/s | 415.5 KiB |  00m00s
[156/161] Installing gcc-c++-0:14.1.1-4 100% | 267.5 MiB/s |  35.0 MiB |  00m00s
[157/161] Installing annobin-plugin-gcc 100% |  57.4 MiB/s |   1.1 MiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:291-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:291-1.fc41.noarch
[158/161] Installing gcc-plugin-annobin 100% |   9.2 MiB/s | 198.6 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:291-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:291-1.fc41.noarch
[159/161] Installing gsl-devel-0:2.7.1- 100% | 150.2 MiB/s |   1.7 MiB |  00m00s
[160/161] Installing add-determinism-0: 100% | 253.5 MiB/s |   2.3 MiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[161/161] Installing perl-generators-0: 100% |  93.1 KiB/s |  23.2 KiB |  00m00s
>>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-18.fc41.aarch64
>>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-18.fc41.aarch64
>>> Running trigger-install scriptlet: info-0:7.1-2.fc40.aarch64
>>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.aarch64
Warning: skipped PGP checks for 159 package(s).
Finish: build setup for mmseq-1.0.11-19.fc41.src.rpm
Start: rpmbuild mmseq-1.0.11-19.fc41.src.rpm
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1706140800
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.Cqie4y
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.P9gtFI
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf mmseq-1.0.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.11
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #2 (mmseq-zlib.patch):'
Patch #2 (mmseq-zlib.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
+ rm -f bin/offsetGTF-linux bin/postdiff-linux
+ sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.2JPFpo
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ cd src
+ make -j4 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp 
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c -o fasta.o fasta.c
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 offsetGTF.cpp -o ../bin/offsetGTF
offsetGTF.cpp: In function ‘int main(int, char**)’:
offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  115 |       while(gff_ind < gff_positions[chrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  117 |               pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable ‘curoff’ [-Wunused-variable]
  114 |       int curoff=offset;
      |           ^~~~~~
offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  150 |       while(gff_ind < gff_positions[prevchrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  163 |           pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  177 |     while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
      |           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  235 |     for(int i=5; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  237 |       if(i < tokens.size()-1) {
      |          ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable ‘gff_pos’ [-Wunused-variable]
  108 |   int gff_pos= -1;
      |       ^~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 t2g_hits.cpp -o ../bin/t2g_hits
t2g_hits.cpp: In function ‘int main(int, char**)’:
t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   90 |         for(int i=2; i < tokens.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~
t2g_hits.cpp:112:13: warning: ignoring return value of ‘_FIter std::unique(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<__cxx11::basic_string<char>*, vector<__cxx11::basic_string<char> > >]’, declared with attribute ‘nodiscard’ [-Wunused-result]
  112 |       unique(comb.begin(), comb.end());
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
                 from t2g_hits.cpp:27:
/usr/include/c++/14/bits/stl_algo.h:891:5: note: declared here
  891 |     unique(_ForwardIterator __first, _ForwardIterator __last)
      |     ^~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
extract_transcripts.cpp: In function ‘int main(int, char**)’:
extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  122 |       for(int i=0; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  169 |     for(int i=0; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  195 |       for(int i=0; i < it->starts()->size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~
extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  203 |       while(faline < stitch.size()) {
      |             ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable ‘line’ [-Wunused-variable]
  108 |   int line=0;
      |       ^~~~
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void get_unidentifiable_transcripts(std::string, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, bool>&)’:
mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  158 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  213 |     for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  259 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)’:
mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  400 |   for(int s=0; s < R.n_slices; s++) {
      |                ~~^~~~~~~~~~~~
mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  401 |     for(int t=0; t < candidates.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  402 |       for(int j=1; j < indexes.size(); j++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  414 |     for(int j=1; j < indexes.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  417 |       for(int i=0; i < R.n_cols; i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  426 |   for(int i=0; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |   for(int i=1; i < tset.size(); i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  437 |   for(int i=1; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >)’:
mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  445 |   for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
      |                ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  452 |   for(int c=0; c < candidates.size(); c++) {
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  456 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  464 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  469 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  476 |   for(int i=0; i < toshed.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)’:
mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  486 |     for(int v= 0; v < R.n_rows; v++) {
      |                   ~~^~~~~~~~~~
mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
  492 |       for(int i=0; i < u.size(); i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp: In function ‘void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&)’:
mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  519 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  543 |         for(int t=0; t < tokens.size(); t++) {
      |                      ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘int main(int, char**)’:
mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  632 |   for(int i=1; i < basenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  691 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  707 |   for(int i=0; i < candidates.size(); i++) ts.push_back(i);
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  732 |     for(int i=0 ;i < maxcorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  738 |     for(int i=0 ;i < mincorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  802 |         for(int i=0 ;i < maxcorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  808 |         for(int i=0 ;i < mincorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  827 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  852 |       for(int t=0; t < tokens.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  882 |       for(int t=0; t < tokens2.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  934 |     for(int t=0; t < M.n_cols; t++) {
      |                  ~~^~~~~~~~~~
mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  963 |     for(int i=1; i < tokens2.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  976 |       if(MM.size1() < i+1 ) factor1=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  977 |       if(MM.size2() < j+1 ) factor2=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1010 |     for(int t=0; t < ids.size(); t++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1083 |     for(int i=0; i < ids.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1092 |     for(int v = 0; v < M.n_cols; v++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:840:9: warning: unused variable ‘isident’ [-Wunused-variable]
  840 |     int isident=0;
      |         ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmseq.cpp: In function ‘std::vector<double> meanvar(std::vector<double>, double, double)’:
mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  130 |   for(int i=0;i < v.size(); i++) {
      |               ~~^~~~~~~~~~
mmseq.cpp: In function ‘int main(int, char**)’:
mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  244 |       for(int i=0; i < tokens.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~
mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  423 |       if(M.size1() < m ) factor1=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  424 |       if(M.size2() < n ) factor2=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  594 |   for(unsigned t=0; t < n; t++)  {
      |                     ~~^~~
mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  736 |     for(unsigned t=0; t < n; t++)
      |                       ~~^~~
mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  765 |       for(unsigned t=0; t < n; t++)
      |                         ~~^~~
mmseq.cpp:774:11: warning: unused variable ‘threadid’ [-Wunused-variable]
  774 |       int threadid=OMP_GET_THREAD_NUM;
      |           ^~~~~~~~
mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  829 |   for(unsigned t=0; t < n; t++)
      |                     ~~^~~
mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  912 |       for(unsigned t=0; t < n; t++) {
      |                         ~~^~~
mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  940 |   for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  961 |   for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1098 |   for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
      |                     ~~^~~
mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1112 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1136 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1144 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1149 |   for(int i=0;i < identical_transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1156 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1161 |   for(int i=0;i < gene2transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1168 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1179 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1189 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1208 |     for(int t=0; t < identical_transcripts.size() ; t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1212 |     for(int t=0; t < gene2transcripts.size(); t++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1226 |   for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1227 |   for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1330 |   for(int t=0; t < identical_transcripts.size(); t++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1349 |   for(int g=0; g < gene2transcripts.size(); g++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1473 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1475 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1482 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1484 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1506 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1508 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1514 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1516 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1536 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1538 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1544 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1546 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1560 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1562 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1582 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1584 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1599 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1601 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1619 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1621 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1644 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1646 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1656 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1658 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:308:8: warning: unused variable ‘buf16384’ [-Wunused-variable]
  308 |   char buf16384[16384];
      |        ^~~~~~~~
mmseq.cpp:391:8: warning: variable ‘doublehit’ set but not used [-Wunused-but-set-variable]
  391 |   bool doublehit;
      |        ^~~~~~~~~
bam2hits.cpp: In function ‘void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)’:
bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  109 |   for(int i=0; i < sortedfastas.size()-1; i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  119 |       for(int j=0; j < curSet.size()-1; j++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  137 |   for(int j=0; j < curSet.size()-1; j++) {
      |                ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp: In function ‘std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)’:
bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Alignment>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |   for(int j=0; j < alns.size(); j++) {
      |                ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  219 |     if(i < torem.size() && j==torem[i]) {
      |        ~~^~~~~~~~~~~~~~
bam2hits.cpp: In function ‘int main(int, char**)’:
bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  518 |         if(_B != tg[0].size()-2) {
      |            ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  520 |           if(_A == tg[0].size()-2) {
      |              ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  522 |             if(_A != tg[1].size()-2) {
      |                ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  558 |       for(int i=1; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  609 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  645 |     for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
      |                 ~~^~~~~~~~~~~~~~~
bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  659 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  662 |         for(int j =0; j < fastas[i].seq().size(); j++) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  663 |           int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
      |                                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  791 |       for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  920 |     for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  948 |     for(int i=0; i < testIsizes.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  959 |     for(int i=0; i < heights.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  997 |       for(int fl=1; fl <= (it->seq()).size(); fl++) {
      |                     ~~~^~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:1091:56: warning: comparing the result of pointer addition ‘(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >::operator->()->Alignment::NM()))’ and NULL [-Waddress]
 1091 |             ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM")));
      |                                                        ^
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitstools.cpp: In function ‘void convert(char*, std::string)’:
hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   51 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function ‘int main(int, char**)’:
hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |                 for(int i = 0; i < transcriptName.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  136 |     for(int i = 0; i < transcriptName.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp: In function ‘void parse_mmseq(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)’:
mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  100 |   for(int i=0; i < filenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  111 |     for(int j=0; j < tokens.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  138 |       if(k + 1 > features.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  147 |       if(k+1 > y.n_rows) {
      |          ~~~~^~~~~~~~~~
mmdiff.cpp:152:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  152 |       if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
      |          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  173 |   if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
      |                                                    ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:94:46: warning: variable ‘mcse_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                              ^~~~~~~~
mmdiff.cpp:94:59: warning: variable ‘iact_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                                           ^~~~~~~~
mmdiff.cpp: In function ‘void apply_normalisation(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, arma::Mat<double>&, arma::Mat<double>&, double)’:
mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  212 |   for(int i=0; i < uh.n_rows; i++) {
      |                ~~^~~~~~~~~~~
mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  214 |     for(int j=0; j < uh.n_cols; j++) {
      |                  ~~^~~~~~~~~~~
mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  230 |   for(int i=0; i < use.size(); i++) {
      |                ~~^~~~~~~~~~~~
mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  232 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  239 |   for(int sample=0; sample < y.n_cols; sample++) {
      |                     ~~~~~~~^~~~~~~~~~
mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  241 |     for(int i=0; i < use.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  246 |     for(int i=0; i < y.n_rows; i++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)’:
mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  257 |   for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
      |                ~^~~~~~~~~~
mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  258 |   for(int i=0; i < y.n_rows; i++) {
      |                ~~^~~~~~~~~~
mmdiff.cpp:259:19: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<int*, vector<int, allocator<int> > >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
  259 |     random_shuffle(randinds.begin(), randinds.end());
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
                 from mmdiff.cpp:31:
/usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here
 4491 |     random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
      |     ^~~~~~~~~~~~~~
mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  260 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void parse_matrices(std::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)’:
mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  310 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function ‘int main(int, char**)’:
mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  420 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  439 |       while(ss < arguments.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  451 |       if(ss != arguments.size()) {
      |          ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  578 |   for(int i=0; i < arguments.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  640 |     for(int i=0; i < simple_de.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:759:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  759 |     if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  764 |     for(int feature=0; feature < features.size(); feature++) {
      |                        ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:837:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  837 |     if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  886 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  898 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string<char>::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare]
  902 |       found2 = found2==string::npos ? -1 : found2;
      |                ~~~~~~^~~~~~~~~~~~~~
mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  907 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  909 |     if(f < samplenames.size()-1) cout << "\t";
      |        ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  914 |   for(int feature=0; feature < features.size(); feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  926 |         for(int l=0; l < M.n_cols; l++) {
      |                      ~~^~~~~~~~~~
mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  936 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  939 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  941 |       if(f < samplenames.size()-1) cout << "\t";
      |          ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  951 |       for(int feature=0; feature < features.size(); feature++) {
      |                          ~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/bin/ld: /tmp/ccf6Ut8f.ltrans0.ltrans.o: in function `main':
/builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/src/bam2hits.cpp:653:(.text.startup+0x2588): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.GmQAk9
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ '[' /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
++ dirname /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ mkdir /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.0.11-19.fc41 --unique-debug-suffix -1.0.11-19.fc41.aarch64 --unique-debug-src-base mmseq-1.0.11-19.fc41.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11
find-debuginfo: starting
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/mmseq-1.0.11-19.fc41.aarch64
542 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
Cannot initialize handler pyc: ModuleNotFoundError: No module named 'marshalparser'
[src/multiprocess.rs:66:9] &cmd = Command {
    program: "/usr/bin/add-determinism",
    args: [
        "/usr/bin/add-determinism",
        "--socket",
        "3",
        "--brp",
        "--handler",
        "ar,jar,javadoc",
    ],
    env: CommandEnv {
        clear: false,
        vars: {
            "SOURCE_DATE_EPOCH": Some(
                "1706140800",
            ),
        },
    },
    create_pidfd: false,
}
Bye!
Bye!
Bye!
Bye!
Reading /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.1ejQ3V
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
++ bin/mmseq --version
++ true
+ test mmseq-1.0.11 = mmseq-1.0.11
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: mmseq-1.0.11-19.fc41.aarch64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.e49Jsq
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd mmseq-1.0.11
+ DOCDIR=/builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/README.md /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/COPYING /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/doc /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: mmseq = 1.0.11-19.fc41 mmseq(aarch-64) = 1.0.11-19.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libboost_iostreams.so.1.83.0()(64bit) libboost_regex.so.1.83.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debugsource-1.0.11-19.fc41.aarch64
Provides: mmseq-debugsource = 1.0.11-19.fc41 mmseq-debugsource(aarch-64) = 1.0.11-19.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: mmseq-debuginfo-1.0.11-19.fc41.aarch64
Provides: debuginfo(build-id) = 12a498be7956d686057da6dfe719201e5068554e debuginfo(build-id) = 2fb17de16906debeb5fdd8218d5471a2180dac11 debuginfo(build-id) = 362af88c1a840fd0f9a75ef54223b36b00254190 debuginfo(build-id) = 58523a8c1a71a0cf8dd7e851211f1e2c938a5c1c debuginfo(build-id) = 5ae038fc98c36f052802611b5810df03e2b7c484 debuginfo(build-id) = 5c84b0d4e1f776d5a0c18ce1211535b3a9a0d992 debuginfo(build-id) = 89228b8faaedf49993af15e0df86dd8bbd716e37 debuginfo(build-id) = eaa7bc1cd5122af641f418805b19aa747101b24b mmseq-debuginfo = 1.0.11-19.fc41 mmseq-debuginfo(aarch-64) = 1.0.11-19.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: mmseq-debugsource(aarch-64) = 1.0.11-19.fc41
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-19.fc41.aarch64.rpm
Wrote: /builddir/build/RPMS/mmseq-1.0.11-19.fc41.aarch64.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-19.fc41.aarch64.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.waecQE
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild mmseq-1.0.11-19.fc41.src.rpm
Finish: build phase for mmseq-1.0.11-19.fc41.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-aarch64-1717089561.423908/root/var/log/dnf5.log
INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-19.fc41.src.rpm) Config(child) 1 minutes 5 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "19.fc41",
            "arch": "src"
        },
        {
            "name": "mmseq-debuginfo",
            "epoch": null,
            "version": "1.0.11",
            "release": "19.fc41",
            "arch": "aarch64"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "19.fc41",
            "arch": "aarch64"
        },
        {
            "name": "mmseq-debugsource",
            "epoch": null,
            "version": "1.0.11",
            "release": "19.fc41",
            "arch": "aarch64"
        }
    ]
}
RPMResults finished