Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1c9' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7741921-fedora-rawhide-i386 --chroot fedora-rawhide-i386 Version: 0.73 PID: 19288 Logging PID: 19289 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7741921, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-i386', 'enable_net': False, 'fedora_review': False, 'git_hash': '41a074ee1e290ce1746b8cfaa7232de5e44f5d9b', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Biostrings', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-Biostrings', 'package_version': '2.64.1-9', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-rawhide-i386/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/releng', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/releng', 'tags': [], 'task_id': '7741921-fedora-rawhide-i386', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Biostrings /var/lib/copr-rpmbuild/workspace/workdir-0579dgkv/R-Biostrings --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Biostrings', '/var/lib/copr-rpmbuild/workspace/workdir-0579dgkv/R-Biostrings', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-0579dgkv/R-Biostrings'... Running: git checkout 41a074ee1e290ce1746b8cfaa7232de5e44f5d9b -- cmd: ['git', 'checkout', '41a074ee1e290ce1746b8cfaa7232de5e44f5d9b', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-0579dgkv/R-Biostrings rc: 0 stdout: stderr: Note: switching to '41a074ee1e290ce1746b8cfaa7232de5e44f5d9b'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 41a074e automatic import of R-Biostrings Running: copr-distgit-client sources INFO: Calling: curl -H Pragma: -o Biostrings_2.64.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/R-Biostrings/Biostrings_2.64.1.tar.gz/md5/71a78d5b184e315b7d4565f783f35d6e/Biostrings_2.64.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 11.8M 100 11.8M 0 0 54.6M 0 --:--:-- --:--:-- --:--:-- 54.8M INFO: Reading stdout from command: md5sum Biostrings_2.64.1.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-0579dgkv/R-Biostrings/R-Biostrings.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-0579dgkv/R-Biostrings --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1721233137.854536 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-0579dgkv/R-Biostrings/R-Biostrings.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-0579dgkv/R-Biostrings --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1721233137.854536 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-0579dgkv/R-Biostrings/R-Biostrings.spec) Config(fedora-rawhide-i686) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1721233137.854536/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-i686-bootstrap-1721233137.854536/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/b24bdd3edc7bddb35a7c0fcda54368b23025b8dc8fb713bb3c26293c9ea25e5a/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/b24bdd3edc7bddb35a7c0fcda54368b23025b8dc8fb713bb3c26293c9ea25e5a/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf5 tooling Updating and loading repositories: local 100% | 24.7 MiB/s | 14.1 MiB | 00m01s Additional repo http_kojipkgs_fedorapr 100% | 34.0 MiB/s | 14.1 MiB | 00m00s Copr repository 100% | 15.9 MiB/s | 2.8 MiB | 00m00s Repositories loaded. Package "dnf5-5.2.4.0-1.fc41.x86_64" is already installed. Package "dnf5-plugins-5.2.4.0-1.fc41.x86_64" is already installed. Nothing to do. Finish(bootstrap): installing dnf5 tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1721233137.854536/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-2.fc41.x86_64 rpm-sequoia-1.7.0-1.fc41.x86_64 dnf5-5.2.4.0-1.fc41.x86_64 dnf5-plugins-5.2.4.0-1.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: local 100% | 92.0 KiB/s | 3.5 KiB | 00m00s Copr repository 100% | 39.4 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 76.5 KiB/s | 3.8 KiB | 00m00s local 100% | 53.8 MiB/s | 12.6 MiB | 00m00s Copr repository 100% | 15.0 MiB/s | 2.8 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 45.3 MiB/s | 12.6 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash i686 5.2.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.3 MiB bzip2 i686 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 89.9 KiB coreutils i686 9.5-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.4 MiB cpio i686 2.15-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB diffutils i686 3.10-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB fedora-release noarch 41-0.16 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B findutils i686 1:4.10.0-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 MiB gawk i686 5.3.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB glibc-minimal-langpack i686 2.39.9000-30.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B grep i686 3.11-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB gzip i686 1.13-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 384.1 KiB info i686 7.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 360.4 KiB patch i686 2.7.6-24.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 297.9 KiB redhat-rpm-config noarch 293-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183.5 KiB rpm-build i686 4.19.92-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 170.3 KiB sed i686 4.9-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 860.6 KiB shadow-utils i686 2:4.15.1-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.0 MiB tar i686 2:1.35-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB unzip i686 6.0-63.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 392.2 KiB util-linux i686 2.40.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.5 MiB which i686 2.21-41.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.8 KiB xz i686 1:5.6.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB Installing dependencies: add-determinism i686 0.3.3-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB alternatives i686 1.28-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 61.5 KiB ansible-srpm-macros noarch 1-15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.7 KiB audit-libs i686 4.0.1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 337.9 KiB authselect i686 1.5.0-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 160.6 KiB authselect-libs i686 1.5.0-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 821.4 KiB basesystem noarch 11-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B binutils i686 2.42.50-14.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 24.9 MiB build-reproducibility-srpm-macros noarch 0.3.3-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 735.0 B bzip2-libs i686 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 75.9 KiB ca-certificates noarch 2024.2.68_v8.0.302-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB coreutils-common i686 9.5-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.2 MiB cracklib i686 2.9.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235.7 KiB crypto-policies noarch 20240717-1.git154fd4e.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 130.4 KiB curl i686 8.8.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 739.0 KiB cyrus-sasl-lib i686 2.1.28-24.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB debugedit i686 5.0-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.8 KiB dwz i686 0.15-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 324.9 KiB ed i686 1.20.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 141.7 KiB efi-srpm-macros noarch 5-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 KiB elfutils i686 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB elfutils-debuginfod-client i686 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55.2 KiB elfutils-default-yama-scope noarch 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB elfutils-libelf i686 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB elfutils-libs i686 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 696.6 KiB fedora-gpg-keys noarch 41-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 124.7 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0 B gdb-minimal i686 14.2-14.fc41 copr_base 13.4 MiB gdbm i686 1:1.23-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 449.8 KiB gdbm-libs i686 1:1.23-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 124.4 KiB ghc-srpm-macros noarch 1.9.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 747.0 B glibc i686 2.39.9000-30.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.5 MiB glibc-common i686 2.39.9000-30.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB glibc-gconv-extra i686 2.39.9000-30.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.3 MiB gmp i686 1:6.3.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 734.5 KiB gnat-srpm-macros noarch 6-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 KiB go-srpm-macros noarch 3.6.0-1.fc41 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 179.7 KiB libssh i686 0.10.6-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 547.3 KiB libssh-config noarch 0.10.6-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.0 B libstdc++ i686 14.1.1-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.8 MiB libtasn1 i686 4.19.0-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 178.9 KiB libtirpc i686 1.3.4-1.rc3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.9 KiB libtool-ltdl i686 2.4.7-11.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 69.4 KiB libunistring i686 1.1-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB libutempter i686 1.2.1-14.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 56.2 KiB libuuid i686 2.40.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 44.7 KiB libverto i686 0.3.2-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 28.7 KiB libxcrypt i686 4.4.36-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 274.2 KiB libxml2 i686 2.12.8-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB libzstd i686 1.5.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 723.1 KiB lua-libs i686 5.4.6-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 308.6 KiB lua-srpm-macros noarch 1-13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 KiB lz4-libs i686 1.9.4-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 132.7 KiB mpfr i686 4.2.1-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 962.5 KiB ncurses-base noarch 6.4-12.20240127.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.2 KiB ncurses-libs i686 6.4-12.20240127.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 963.1 KiB ocaml-srpm-macros noarch 10-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB openblas-srpm-macros noarch 2-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0 B openldap i686 2.6.8-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 669.4 KiB openssl-libs i686 1:3.2.2-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.3 MiB p11-kit i686 0.25.5-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB p11-kit-trust i686 0.25.5-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 361.6 KiB package-notes-srpm-macros noarch 0.5-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam i686 1.6.1-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB pam-libs i686 1.6.1-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 120.7 KiB pcre2 i686 10.44-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 660.0 KiB pcre2-syntax noarch 10.44-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-55.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf i686 2.1.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.3 KiB pkgconf-m4 noarch 2.1.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13.9 KiB pkgconf-pkg-config i686 2.1.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 979.0 B popt i686 1.19-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 135.9 KiB publicsuffix-list-dafsa noarch 20240107-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.13.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 KiB python-srpm-macros noarch 3.13-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.14-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.7.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline i686 8.2-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 457.5 KiB rpm i686 4.19.92-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB rpm-build-libs i686 4.19.92-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.4 KiB rpm-libs i686 4.19.92-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 756.9 KiB rpm-sequoia i686 1.7.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB rust-srpm-macros noarch 26.3-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs i686 3.46.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB systemd-libs i686 256.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB util-linux-core i686 2.40.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB xxhash-libs i686 0.8.2-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 115.8 KiB xz-libs i686 1:5.6.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 229.8 KiB zig-srpm-macros noarch 1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip i686 3.0-40.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 707.0 KiB zlib-ng-compat i686 2.1.7-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.4 KiB zstd i686 1.5.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB Installing groups: build Transaction Summary: Installing: 154 packages Total size of inbound packages is 53 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>>> Running post-install scriptlet: libgcc-0:14.1.1-7.fc41.i686 >>> Stop post-install scriptlet: libgcc-0:14.1.1-7.fc41.i686 [ 4/156] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 5/156] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/156] Installing fedora-release-ide 100% | 0.0 B/s | 952.0 B | 00m00s [ 7/156] Installing fedora-gpg-keys-0: 100% | 20.7 MiB/s | 169.7 KiB | 00m00s [ 8/156] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 9/156] Installing fedora-repos-0:41- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/156] Installing fedora-release-com 100% | 11.5 MiB/s | 23.5 KiB | 00m00s [ 11/156] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/156] Installing setup-0:2.15.0-4.f 100% | 50.6 MiB/s | 726.1 KiB | 00m00s >>> Running post-install scriptlet: setup-0:2.15.0-4.fc41.noarch >>> Stop post-install scriptlet: setup-0:2.15.0-4.fc41.noarch [ 13/156] Installing filesystem-0:3.18- 100% | 1.7 MiB/s | 212.0 KiB | 00m00s [ 14/156] Installing basesystem-0:11-20 100% | 0.0 B/s | 124.0 B | 00m00s [ 15/156] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB | 00m00s [ 16/156] Installing coreutils-common-0 100% | 243.3 MiB/s | 11.2 MiB | 00m00s [ 17/156] Installing ncurses-base-0:6.4 100% | 42.9 MiB/s | 351.6 KiB | 00m00s [ 18/156] Installing pkgconf-m4-0:2.1.1 100% | 0.0 B/s | 14.3 KiB | 00m00s [ 19/156] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [ 20/156] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [ 21/156] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [ 22/156] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [ 23/156] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [ 24/156] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [ 25/156] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [ 26/156] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [ 27/156] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [ 28/156] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 29/156] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [ 30/156] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [ 31/156] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 32/156] Installing ncurses-libs-0:6.4 100% | 157.8 MiB/s | 969.5 KiB | 00m00s >>> Running pre-install scriptlet: glibc-0:2.39.9000-30.fc41.i686 >>> Stop pre-install scriptlet: glibc-0:2.39.9000-30.fc41.i686 warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 33/156] Installing glibc-0:2.39.9000- 100% | 103.7 MiB/s | 5.5 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.39.9000-30.fc41.i686 >>> Stop post-install scriptlet: glibc-0:2.39.9000-30.fc41.i686 [ 34/156] Installing bash-0:5.2.26-3.fc 100% | 267.5 MiB/s | 8.3 MiB | 00m00s >>> Running post-install scriptlet: bash-0:5.2.26-3.fc40.i686 >>> Stop post-install scriptlet: bash-0:5.2.26-3.fc40.i686 [ 35/156] Installing glibc-common-0:2.3 100% | 128.2 MiB/s | 1.0 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), 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KiB | 00m00s [ 46/156] Installing libxcrypt-0:4.4.36 100% | 135.2 MiB/s | 276.9 KiB | 00m00s [ 47/156] Installing libzstd-0:1.5.6-1. 100% | 235.8 MiB/s | 724.4 KiB | 00m00s [ 48/156] Installing elfutils-libelf-0: 100% | 294.1 MiB/s | 1.2 MiB | 00m00s [ 49/156] Installing gmp-1:6.3.0-1.fc41 100% | 239.8 MiB/s | 736.7 KiB | 00m00s [ 50/156] Installing libstdc++-0:14.1.1 100% | 255.2 MiB/s | 2.8 MiB | 00m00s [ 51/156] Installing libeconf-0:0.6.2-2 100% | 57.5 MiB/s | 58.9 KiB | 00m00s [ 52/156] Installing gdbm-libs-1:1.23-6 100% | 8.2 MiB/s | 126.0 KiB | 00m00s >>> Running pre-install scriptlet: crypto-policies-0:20240717-1.git154fd4e.fc41. >>> Stop pre-install scriptlet: crypto-policies-0:20240717-1.git154fd4e.fc41.noa [ 53/156] Installing crypto-policies-0: 100% | 15.2 MiB/s | 156.1 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20240717-1.git154fd4e.fc41 >>> Stop post-install scriptlet: crypto-policies-0:20240717-1.git154fd4e.fc41.no [ 54/156] Installing 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00m00s [ 67/156] Installing libsepol-0:3.7-1.f 100% | 284.6 MiB/s | 874.3 KiB | 00m00s [ 68/156] Installing pcre2-0:10.44-1.fc 100% | 215.3 MiB/s | 661.4 KiB | 00m00s [ 69/156] Installing libselinux-0:3.7-3 100% | 189.0 MiB/s | 193.5 KiB | 00m00s [ 70/156] Installing sed-0:4.9-1.fc40.i 100% | 121.2 MiB/s | 868.8 KiB | 00m00s [ 71/156] Installing grep-0:3.11-8.fc41 100% | 125.3 MiB/s | 1.0 MiB | 00m00s [ 72/156] Installing findutils-1:4.10.0 100% | 188.0 MiB/s | 1.9 MiB | 00m00s [ 73/156] Installing xz-1:5.6.2-1.fc41. 100% | 134.1 MiB/s | 1.2 MiB | 00m00s [ 74/156] Installing libmount-0:2.40.2- 100% | 189.5 MiB/s | 388.1 KiB | 00m00s [ 75/156] Installing lz4-libs-0:1.9.4-6 100% | 130.6 MiB/s | 133.7 KiB | 00m00s [ 76/156] Installing alternatives-0:1.2 100% | 61.7 MiB/s | 63.1 KiB | 00m00s [ 77/156] Installing lua-libs-0:5.4.6-5 100% | 151.3 MiB/s | 309.8 KiB | 00m00s [ 78/156] Installing libtasn1-0:4.19.0- 100% | 176.5 MiB/s | 180.7 KiB | 00m00s [ 79/156] Installing libunistring-0:1.1 100% | 289.0 MiB/s | 1.7 MiB | 00m00s [ 80/156] Installing elfutils-default-y 100% | 136.2 KiB/s | 2.0 KiB | 00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-7.fc41.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-7.fc41.noar [ 81/156] Installing elfutils-libs-0:0. 100% | 170.5 MiB/s | 698.4 KiB | 00m00s [ 82/156] Installing libidn2-0:2.3.7-1. 100% | 80.6 MiB/s | 330.3 KiB | 00m00s [ 83/156] Installing libpsl-0:0.21.5-3. 100% | 71.2 MiB/s | 72.9 KiB | 00m00s [ 84/156] Installing zstd-0:1.5.6-1.fc4 100% | 258.6 MiB/s | 1.6 MiB | 00m00s [ 85/156] Installing util-linux-core-0: 100% | 125.8 MiB/s | 1.4 MiB | 00m00s [ 86/156] Installing tar-2:1.35-3.fc40. 100% | 230.4 MiB/s | 3.0 MiB | 00m00s [ 87/156] Installing libsemanage-0:3.7- 100% | 99.6 MiB/s | 305.9 KiB | 00m00s [ 88/156] Installing shadow-utils-2:4.1 100% | 74.7 MiB/s | 4.0 MiB | 00m00s >>> Running pre-install scriptlet: libutempter-0:1.2.1-14.fc41.i686 >>> Stop pre-install scriptlet: libutempter-0:1.2.1-14.fc41.i686 [ 89/156] Installing libutempter-0:1.2. 100% | 28.4 MiB/s | 58.1 KiB | 00m00s [ 90/156] Installing zip-0:3.0-40.fc40. 100% | 173.6 MiB/s | 710.9 KiB | 00m00s [ 91/156] Installing gdbm-1:1.23-6.fc40 100% | 111.0 MiB/s | 454.7 KiB | 00m00s [ 92/156] Installing cyrus-sasl-lib-0:2 100% | 248.0 MiB/s | 2.5 MiB | 00m00s [ 93/156] Installing libfdisk-0:2.40.2- 100% | 200.9 MiB/s | 411.5 KiB | 00m00s [ 94/156] Installing bzip2-0:1.0.8-18.f 100% | 46.1 MiB/s | 94.4 KiB | 00m00s [ 95/156] Installing libxml2-0:2.12.8-1 100% | 258.7 MiB/s | 1.8 MiB | 00m00s [ 96/156] Installing add-determinism-0: 100% | 294.8 MiB/s | 2.1 MiB | 00m00s [ 97/156] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 98/156] Installing sqlite-libs-0:3.46 100% | 250.0 MiB/s | 1.5 MiB | 00m00s [ 99/156] Installing ed-0:1.20.2-1.fc41 100% | 140.6 MiB/s | 144.0 KiB | 00m00s [100/156] Installing patch-0:2.7.6-24.f 100% | 146.2 MiB/s | 299.5 KiB | 00m00s [101/156] Installing cpio-0:2.15-1.fc40 100% | 157.9 MiB/s | 1.1 MiB | 00m00s [102/156] Installing diffutils-0:3.10-5 100% | 176.8 MiB/s | 1.6 MiB | 00m00s [103/156] Installing libpkgconf-0:2.1.1 100% | 80.0 MiB/s | 81.9 KiB | 00m00s [104/156] Installing pkgconf-0:2.1.1-1. 100% | 40.9 MiB/s | 83.8 KiB | 00m00s [105/156] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s [106/156] Installing keyutils-libs-0:1. 100% | 57.6 MiB/s | 59.0 KiB | 00m00s [107/156] Installing libverto-0:0.3.2-8 100% | 29.8 MiB/s | 30.5 KiB | 00m00s [108/156] Installing jansson-0:2.13.1-9 100% | 86.9 MiB/s | 88.9 KiB | 00m00s [109/156] Installing libgomp-0:14.1.1-7 100% | 257.8 MiB/s | 527.9 KiB | 00m00s [110/156] Installing libffi-0:3.4.6-1.f 100% | 77.1 MiB/s | 78.9 KiB | 00m00s [111/156] Installing p11-kit-0:0.25.5-2 100% | 166.6 MiB/s | 2.3 MiB | 00m00s [112/156] Installing p11-kit-trust-0:0. 100% | 23.7 MiB/s | 363.3 KiB | 00m00s >>> Running post-install scriptlet: p11-kit-trust-0:0.25.5-2.fc41.i686 >>> Stop post-install scriptlet: p11-kit-trust-0:0.25.5-2.fc41.i686 [113/156] Installing openssl-libs-1:3.2 100% | 261.1 MiB/s | 6.3 MiB | 00m00s [114/156] Installing coreutils-0:9.5-5. 100% | 137.0 MiB/s | 5.5 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-2.fc41.n >>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-2.fc41.noar [115/156] Installing ca-certificates-0: 100% | 1.9 MiB/s | 2.4 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-2.fc41. >>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-2.fc41.noa [116/156] Installing krb5-libs-0:1.21.3 100% | 179.7 MiB/s | 2.3 MiB | 00m00s [117/156] Installing libarchive-0:3.7.4 100% | 241.3 MiB/s | 988.4 KiB | 00m00s [118/156] Installing libtirpc-0:1.3.4-1 100% | 103.3 MiB/s | 211.7 KiB | 00m00s [119/156] Installing gzip-0:1.13-1.fc40 100% | 126.8 MiB/s | 389.6 KiB | 00m00s [120/156] Installing authselect-libs-0: 100% | 90.7 MiB/s | 836.3 KiB | 00m00s [121/156] Installing cracklib-0:2.9.11- 100% | 34.5 MiB/s | 247.1 KiB | 00m00s [122/156] Installing libpwquality-0:1.4 100% | 51.6 MiB/s | 423.0 KiB | 00m00s [123/156] Installing libnsl2-0:2.0.1-1. 100% | 56.9 MiB/s | 58.2 KiB | 00m00s [124/156] Installing pam-0:1.6.1-4.fc41 100% | 78.6 MiB/s | 1.7 MiB | 00m00s [125/156] Installing libssh-0:0.10.6-6. 100% | 178.8 MiB/s | 549.4 KiB | 00m00s [126/156] Installing rpm-sequoia-0:1.7. 100% | 262.6 MiB/s | 2.6 MiB | 00m00s [127/156] Installing rpm-libs-0:4.19.92 100% | 185.2 MiB/s | 758.4 KiB | 00m00s [128/156] Installing rpm-build-libs-0:4 100% | 102.7 MiB/s | 210.3 KiB | 00m00s [129/156] Installing libevent-0:2.1.12- 100% | 232.4 MiB/s | 951.9 KiB | 00m00s [130/156] Installing xxhash-libs-0:0.8. 100% | 114.5 MiB/s | 117.2 KiB | 00m00s [131/156] Installing libbrotli-0:1.1.0- 100% | 209.4 MiB/s | 857.8 KiB | 00m00s [132/156] Installing libnghttp2-0:1.62. 100% | 170.5 MiB/s | 174.6 KiB | 00m00s [133/156] Installing libtool-ltdl-0:2.4 100% | 68.9 MiB/s | 70.5 KiB | 00m00s [134/156] Installing openldap-0:2.6.8-3 100% | 164.4 MiB/s | 673.2 KiB | 00m00s [135/156] Installing libcurl-0:8.8.0-2. 100% | 202.9 MiB/s | 830.9 KiB | 00m00s [136/156] Installing elfutils-debuginfo 100% | 27.9 MiB/s | 57.2 KiB | 00m00s [137/156] Installing binutils-0:2.42.50 100% | 257.0 MiB/s | 24.9 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.42.50-14.fc41.i686 >>> Stop post-install scriptlet: binutils-0:2.42.50-14.fc41.i686 [138/156] Installing elfutils-0:0.191-7 100% | 211.7 MiB/s | 2.5 MiB | 00m00s [139/156] Installing gdb-minimal-0:14.2 100% | 311.5 MiB/s | 13.4 MiB | 00m00s [140/156] Installing debugedit-0:5.0-16 100% | 95.5 MiB/s | 195.6 KiB | 00m00s [141/156] Installing curl-0:8.8.0-2.fc4 100% | 30.2 MiB/s | 741.5 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.92-2.fc41.i686 >>> Stop pre-install scriptlet: rpm-0:4.19.92-2.fc41.i686 [142/156] Installing rpm-0:4.19.92-2.fc 100% | 91.6 MiB/s | 2.5 MiB | 00m00s [143/156] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [144/156] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [145/156] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [146/156] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [147/156] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.3 KiB | 00m00s [148/156] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [149/156] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [150/156] Installing redhat-rpm-config- 100% | 61.9 MiB/s | 190.1 KiB | 00m00s [151/156] Installing rpm-build-0:4.19.9 100% | 43.7 MiB/s | 178.8 KiB | 00m00s [152/156] Installing pyproject-srpm-mac 100% | 2.0 MiB/s | 2.1 KiB | 00m00s [153/156] Installing util-linux-0:2.40. 100% | 80.2 MiB/s | 3.5 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-1.fc41.i686 >>> Stop post-install scriptlet: util-linux-0:2.40.2-1.fc41.i686 [154/156] Installing authselect-0:1.5.0 100% | 40.3 MiB/s | 165.0 KiB | 00m00s [155/156] Installing which-0:2.21-41.fc 100% | 79.2 MiB/s | 81.1 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [156/156] Installing info-0:7.1-2.fc40. 100% | 217.0 KiB/s | 360.8 KiB | 00m02s >>> Running post-transaction scriptlet: filesystem-0:3.18-9.fc41.i686 >>> Stop post-transaction scriptlet: filesystem-0:3.18-9.fc41.i686 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-2.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-2.fc41 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-6.fc41.i686 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-6.fc41.i686 >>> Running post-transaction scriptlet: rpm-0:4.19.92-2.fc41.i686 >>> Stop post-transaction scriptlet: rpm-0:4.19.92-2.fc41.i686 >>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-30.fc41.i686 >>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-30.fc41.i686 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.i686 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.i686 Complete! Warning: skipped PGP checks for 154 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.3-1.fc41.i686 alternatives-1.28-1.fc41.i686 ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-3.fc41.i686 authselect-1.5.0-6.fc41.i686 authselect-libs-1.5.0-6.fc41.i686 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.i686 binutils-2.42.50-14.fc41.i686 build-reproducibility-srpm-macros-0.3.3-1.fc41.noarch bzip2-1.0.8-18.fc40.i686 bzip2-libs-1.0.8-18.fc40.i686 ca-certificates-2024.2.68_v8.0.302-2.fc41.noarch coreutils-9.5-5.fc41.i686 coreutils-common-9.5-5.fc41.i686 cpio-2.15-1.fc40.i686 cracklib-2.9.11-5.fc40.i686 crypto-policies-20240717-1.git154fd4e.fc41.noarch curl-8.8.0-2.fc41.i686 cyrus-sasl-lib-2.1.28-24.fc41.i686 debugedit-5.0-16.fc41.i686 diffutils-3.10-5.fc40.i686 dwz-0.15-6.fc40.i686 ed-1.20.2-1.fc41.i686 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-7.fc41.i686 elfutils-debuginfod-client-0.191-7.fc41.i686 elfutils-default-yama-scope-0.191-7.fc41.noarch elfutils-libelf-0.191-7.fc41.i686 elfutils-libs-0.191-7.fc41.i686 fedora-gpg-keys-41-0.2.noarch fedora-release-41-0.16.noarch fedora-release-common-41-0.16.noarch fedora-release-identity-basic-41-0.16.noarch fedora-repos-41-0.2.noarch fedora-repos-rawhide-41-0.2.noarch file-5.45-6.fc41.i686 file-libs-5.45-6.fc41.i686 filesystem-3.18-9.fc41.i686 findutils-4.10.0-3.fc41.i686 fonts-srpm-macros-2.0.5-16.fc41.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.i686 gdb-minimal-14.2-14.fc41.i686 gdbm-1.23-6.fc40.i686 gdbm-libs-1.23-6.fc40.i686 ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-30.fc41.i686 glibc-common-2.39.9000-30.fc41.i686 glibc-gconv-extra-2.39.9000-30.fc41.i686 glibc-minimal-langpack-2.39.9000-30.fc41.i686 gmp-6.3.0-1.fc41.i686 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-8.fc41.i686 gzip-1.13-1.fc40.i686 info-7.1-2.fc40.i686 jansson-2.13.1-9.fc40.i686 kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.i686 krb5-libs-1.21.3-1.fc41.i686 libacl-2.3.2-1.fc40.i686 libarchive-3.7.4-2.fc41.i686 libattr-2.5.2-3.fc40.i686 libblkid-2.40.2-1.fc41.i686 libbrotli-1.1.0-4.fc41.i686 libcap-2.70-2.fc41.i686 libcap-ng-0.8.5-2.fc41.i686 libcom_err-1.47.1-1.fc41.i686 libcurl-8.8.0-2.fc41.i686 libeconf-0.6.2-2.fc41.i686 libevent-2.1.12-13.fc41.i686 libfdisk-2.40.2-1.fc41.i686 libffi-3.4.6-1.fc41.i686 libgcc-14.1.1-7.fc41.i686 libgomp-14.1.1-7.fc41.i686 libidn2-2.3.7-1.fc40.i686 libmount-2.40.2-1.fc41.i686 libnghttp2-1.62.1-1.fc41.i686 libnsl2-2.0.1-1.fc40.i686 libpkgconf-2.1.1-1.fc41.i686 libpsl-0.21.5-3.fc40.i686 libpwquality-1.4.5-10.fc41.i686 libselinux-3.7-3.fc41.i686 libsemanage-3.7-1.fc41.i686 libsepol-3.7-1.fc41.i686 libsmartcols-2.40.2-1.fc41.i686 libssh-0.10.6-6.fc41.i686 libssh-config-0.10.6-6.fc41.noarch libstdc++-14.1.1-7.fc41.i686 libtasn1-4.19.0-6.fc40.i686 libtirpc-1.3.4-1.rc3.fc41.i686 libtool-ltdl-2.4.7-11.fc41.i686 libunistring-1.1-7.fc41.i686 libutempter-1.2.1-14.fc41.i686 libuuid-2.40.2-1.fc41.i686 libverto-0.3.2-8.fc40.i686 libxcrypt-4.4.36-5.fc40.i686 libxml2-2.12.8-1.fc41.i686 libzstd-1.5.6-1.fc41.i686 lua-libs-5.4.6-5.fc40.i686 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.i686 mpfr-4.2.1-4.fc41.i686 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.i686 ocaml-srpm-macros-10-2.fc41.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.8-3.fc41.i686 openssl-libs-3.2.2-4.fc41.i686 p11-kit-0.25.5-2.fc41.i686 p11-kit-trust-0.25.5-2.fc41.i686 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-4.fc41.i686 pam-libs-1.6.1-4.fc41.i686 patch-2.7.6-24.fc40.i686 pcre2-10.44-1.fc41.i686 pcre2-syntax-10.44-1.fc41.noarch perl-srpm-macros-1-55.fc41.noarch pkgconf-2.1.1-1.fc41.i686 pkgconf-m4-2.1.1-1.fc41.noarch pkgconf-pkg-config-2.1.1-1.fc41.i686 popt-1.19-6.fc40.i686 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.13.0-1.fc41.noarch python-srpm-macros-3.13-2.fc41.noarch qt5-srpm-macros-5.15.14-2.fc41.noarch qt6-srpm-macros-6.7.2-2.fc41.noarch readline-8.2-8.fc40.i686 redhat-rpm-config-293-1.fc41.noarch rpm-4.19.92-2.fc41.i686 rpm-build-4.19.92-2.fc41.i686 rpm-build-libs-4.19.92-2.fc41.i686 rpm-libs-4.19.92-2.fc41.i686 rpm-sequoia-1.7.0-1.fc41.i686 rust-srpm-macros-26.3-1.fc41.noarch sed-4.9-1.fc40.i686 setup-2.15.0-4.fc41.noarch shadow-utils-4.15.1-5.fc41.i686 sqlite-libs-3.46.0-2.fc41.i686 systemd-libs-256.2-1.fc41.i686 tar-1.35-3.fc40.i686 unzip-6.0-63.fc40.i686 util-linux-2.40.2-1.fc41.i686 util-linux-core-2.40.2-1.fc41.i686 which-2.21-41.fc40.i686 xxhash-libs-0.8.2-2.fc40.i686 xz-5.6.2-1.fc41.i686 xz-libs-5.6.2-1.fc41.i686 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.i686 zlib-ng-compat-2.1.7-1.fc41.i686 zstd-1.5.6-1.fc41.i686 Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1721174400 Wrote: /builddir/build/SRPMS/R-Biostrings-2.64.1-9.fc41.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-i686-1721233137.854536/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1721233137.854536/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-0579dgkv/R-Biostrings/R-Biostrings.spec) Config(child) 0 minutes 35 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-Biostrings-2.64.1-9.fc41.src.rpm) Config(fedora-rawhide-i686) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1721233137.854536/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1721233137.854536/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1721233137.854536/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-2.fc41.x86_64 rpm-sequoia-1.7.0-1.fc41.x86_64 dnf5-5.2.4.0-1.fc41.x86_64 dnf5-plugins-5.2.4.0-1.fc41.x86_64 Finish: chroot init Start: build phase for R-Biostrings-2.64.1-9.fc41.src.rpm Start: build setup for R-Biostrings-2.64.1-9.fc41.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1721174400 Wrote: /builddir/build/SRPMS/R-Biostrings-2.64.1-9.fc41.src.rpm Updating and loading repositories: Additional repo http_kojipkgs_fedorapr 100% | 73.6 KiB/s | 3.8 KiB | 00m00s local 100% | 97.1 KiB/s | 3.5 KiB | 00m00s Copr repository 100% | 49.6 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: R-BiocGenerics noarch 0.42.0-9.fc41 copr_base 1.1 MiB R-GenomeInfoDb noarch 1.32.3-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 MiB R-IRanges-devel i686 2.30.1-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.2 KiB R-S4Vectors-devel i686 0.40.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 32.5 KiB R-XVector-devel i686 0.42.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17.3 KiB R-core i686 4.4.1-4.fc41 copr_base 101.7 MiB R-crayon noarch 1.5.1-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 233.5 KiB R-devel i686 4.4.1-4.fc41 copr_base 0.0 B texlive-collection-latexrecommended noarch 11:svn65512-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B Installing dependencies: R-GenomeInfoDbData noarch 1.2.8-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.0 MiB R-IRanges i686 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB texlive-textcase noarch 11:svn63868-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.2 KiB texlive-thumbpdf noarch 11:svn62518-84.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 97.0 KiB texlive-times noarch 11:svn61719-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 992.2 KiB texlive-tipa noarch 11:svn29349.1.3-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.7 MiB texlive-titlesec noarch 11:svn59845-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 97.8 KiB texlive-tools noarch 11:svn64892-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 403.2 KiB texlive-translator noarch 11:svn59412-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 494.7 KiB texlive-transparent noarch 11:svn64852-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 302.0 KiB 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 540.6 KiB texlive-varwidth noarch 11:svn24104.0.92-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19.5 KiB texlive-xcolor noarch 11:svn63563-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 79.3 KiB texlive-xdvi i686 11:svn62387-84.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 762.7 KiB texlive-xetex i686 11:svn66203-84.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB texlive-xetexconfig noarch 11:svn45845-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 305.0 B texlive-xifthen noarch 11:svn38929-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB texlive-xkeyval noarch 11:svn63616-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 69.3 KiB texlive-xltxtra noarch 11:svn56594-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB texlive-xpatch 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tre-devel i686 0.8.0-44.20140228gitc2f5d13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.7 KiB tzdata noarch 2024a-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB urw-base35-bookman-fonts noarch 20200910-22.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-c059-fonts noarch 20200910-22.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-d050000l-fonts noarch 20200910-22.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 84.3 KiB urw-base35-fonts noarch 20200910-22.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.3 KiB urw-base35-fonts-common noarch 20200910-22.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.4 KiB urw-base35-gothic-fonts noarch 20200910-22.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB urw-base35-nimbus-mono-ps-fonts noarch 20200910-22.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB urw-base35-nimbus-roman-fonts noarch 20200910-22.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-nimbus-sans-fonts noarch 20200910-22.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB urw-base35-p052-fonts noarch 20200910-22.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB urw-base35-standard-symbols-ps-fonts noarch 20200910-22.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64.9 KiB urw-base35-z003-fonts noarch 20200910-22.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 390.8 KiB xdg-utils noarch 1.2.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 346.3 KiB xml-common noarch 0.6.3-64.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB xorg-x11-proto-devel noarch 2024.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB xpdf-libs i686 1:4.05-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB xz-devel i686 1:5.6.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 255.6 KiB zlib-ng-compat-devel i686 2.1.7-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.7 KiB zziplib i686 0.13.74-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 230.7 KiB Transaction Summary: Installing: 673 packages Total size of inbound packages is 471 MiB. 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perl-Math-BigInt-1 100% | 234.8 MiB/s | 961.6 KiB | 00m00s [248/675] Installing perl-JSON-0:4.10-5 100% | 133.2 MiB/s | 272.7 KiB | 00m00s [249/675] Installing perl-Net-SMTP-SSL- 100% | 5.2 MiB/s | 5.3 KiB | 00m00s [250/675] Installing perl-MailTools-0:2 100% | 51.8 MiB/s | 212.1 KiB | 00m00s [251/675] Installing perl-Email-Date-Fo 100% | 25.3 MiB/s | 26.0 KiB | 00m00s [252/675] Installing perl-MIME-Types-0: 100% | 179.9 MiB/s | 184.2 KiB | 00m00s [253/675] Installing perl-MIME-Lite-0:3 100% | 121.5 MiB/s | 248.8 KiB | 00m00s [254/675] Installing perl-I18N-LangTags 100% | 81.6 MiB/s | 83.6 KiB | 00m00s [255/675] Installing perl-Locale-Makete 100% | 84.8 MiB/s | 173.7 KiB | 00m00s [256/675] Installing perl-Locale-Makete 100% | 0.0 B/s | 13.5 KiB | 00m00s [257/675] Installing perl-Params-Check- 100% | 27.9 MiB/s | 28.5 KiB | 00m00s [258/675] Installing perl-Number-Compar 100% | 0.0 B/s | 5.4 KiB | 00m00s [259/675] Installing perl-Text-Glob-0:0 100% | 9.0 MiB/s | 9.2 KiB | 00m00s [260/675] Installing perl-File-Find-Rul 100% | 43.2 MiB/s | 44.2 KiB | 00m00s [261/675] Installing perl-Class-Data-In 100% | 0.0 B/s | 7.0 KiB | 00m00s [262/675] Installing perl-Exception-Cla 100% | 92.3 MiB/s | 94.5 KiB | 00m00s [263/675] Installing perl-English-0:1.1 100% | 0.0 B/s | 6.6 KiB | 00m00s [264/675] Installing perl-Class-Inspect 100% | 57.8 MiB/s | 59.2 KiB | 00m00s [265/675] Installing perl-File-ShareDir 100% | 28.9 MiB/s | 59.1 KiB | 00m00s [266/675] Installing perl-DynaLoader-Fu 100% | 20.2 MiB/s | 20.7 KiB | 00m00s [267/675] Installing perl-version-9:0.9 100% | 65.8 MiB/s | 134.8 KiB | 00m00s [268/675] Installing perl-Unicode-Norma 100% | 159.1 MiB/s | 325.7 KiB | 00m00s [269/675] Installing perl-Compress-Raw- 100% | 84.0 MiB/s | 172.0 KiB | 00m00s [270/675] Installing perl-Sys-Hostname- 100% | 20.1 MiB/s | 20.6 KiB | 00m00s [271/675] Installing perl-Time-HiRes-4: 100% | 59.2 MiB/s | 121.2 KiB | 00m00s [272/675] Installing perl-I18N-Langinfo 100% | 34.7 MiB/s | 35.5 KiB | 00m00s [273/675] Installing perl-Encode-Locale 100% | 19.6 MiB/s | 20.0 KiB | 00m00s [274/675] Installing perl-Clone-0:0.46- 100% | 28.7 MiB/s | 29.4 KiB | 00m00s [275/675] Installing perl-Params-Util-0 100% | 27.5 MiB/s | 56.4 KiB | 00m00s [276/675] Installing perl-Data-OptList- 100% | 50.9 MiB/s | 52.1 KiB | 00m00s [277/675] Installing perl-Sub-Exporter- 100% | 65.7 MiB/s | 201.7 KiB | 00m00s [278/675] Installing perl-Sub-Exporter- 100% | 28.2 MiB/s | 28.8 KiB | 00m00s [279/675] Installing perl-Devel-GlobalD 100% | 18.5 MiB/s | 19.0 KiB | 00m00s [280/675] Installing perl-Data-Compare- 100% | 56.6 MiB/s | 58.0 KiB | 00m00s [281/675] Installing perl-Data-Uniqid-0 100% | 5.6 MiB/s | 5.8 KiB | 00m00s [282/675] Installing perl-Mail-Sendmail 100% | 64.9 MiB/s | 66.5 KiB | 00m00s [283/675] Installing perl-Unicode-UCD-0 100% | 200.2 MiB/s | 205.0 KiB | 00m00s [284/675] Installing perl-Module-CoreLi 100% | 378.9 MiB/s | 1.1 MiB | 00m00s [285/675] Installing perl-Module-Metada 100% | 67.3 MiB/s | 68.9 KiB | 00m00s [286/675] Installing perl-Module-Load-C 100% | 29.2 MiB/s | 29.9 KiB | 00m00s [287/675] Installing perl-IPC-Cmd-2:1.0 100% | 83.8 MiB/s | 85.8 KiB | 00m00s [288/675] Installing perl-Text-BibTeX-0 100% | 85.1 MiB/s | 522.7 KiB | 00m00s [289/675] Installing perl-Unicode-Colla 100% | 237.0 MiB/s | 4.0 MiB | 00m00s [290/675] Installing perl-Devel-CallChe 100% | 37.6 MiB/s | 38.5 KiB | 00m00s [291/675] Installing perl-Params-Classi 100% | 51.4 MiB/s | 52.6 KiB | 00m00s [292/675] Installing perl-DateTime-Time 100% | 28.9 MiB/s | 29.6 KiB | 00m00s [293/675] Installing perl-DateTime-Time 100% | 25.2 MiB/s | 25.8 KiB | 00m00s [294/675] Installing perl-Text-Soundex- 100% | 51.1 MiB/s | 52.3 KiB | 00m00s [295/675] Installing perl-Params-Valida 100% | 77.9 MiB/s | 159.6 KiB | 00m00s [296/675] Installing perl-Opcode-0:1.65 100% | 52.0 MiB/s | 53.2 KiB | 00m00s [297/675] Installing perl-Safe-0:2.46-5 100% | 0.0 B/s | 31.0 KiB | 00m00s [298/675] Installing perl-Digest-SHA-1: 100% | 57.8 MiB/s | 118.3 KiB | 00m00s [299/675] Installing perl-Digest-HMAC-0 100% | 29.2 MiB/s | 29.9 KiB | 00m00s [300/675] Installing perl-NTLM-0:1.09-3 100% | 31.9 MiB/s | 32.6 KiB | 00m00s [301/675] Installing perl-Filter-2:1.64 100% | 32.7 MiB/s | 167.2 KiB | 00m00s [302/675] Installing perl-encoding-4:3. 100% | 146.9 MiB/s | 150.4 KiB | 00m00s [303/675] Installing perl-open-0:1.13-5 100% | 5.7 MiB/s | 11.7 KiB | 00m00s [304/675] Installing perl-Compress-Raw- 100% | 34.7 MiB/s | 71.1 KiB | 00m00s [305/675] Installing perl-IO-Compress-0 100% | 146.9 MiB/s | 1.0 MiB | 00m00s [306/675] Installing perl-HTTP-Message- 100% | 71.5 MiB/s | 219.5 KiB | 00m00s [307/675] Installing perl-HTTP-Negotiat 100% | 28.0 MiB/s | 28.6 KiB | 00m00s [308/675] Installing perl-Net-HTTP-0:6. 100% | 75.2 MiB/s | 77.0 KiB | 00m00s [309/675] Installing perl-HTTP-Cookies- 100% | 73.8 MiB/s | 75.6 KiB | 00m00s [310/675] Installing perl-HTML-Parser-0 100% | 94.4 MiB/s | 290.0 KiB | 00m00s [311/675] Installing perl-libwww-perl-0 100% | 103.5 MiB/s | 529.7 KiB | 00m00s [312/675] Installing perl-LWP-Protocol- 100% | 30.3 MiB/s | 31.1 KiB | 00m00s [313/675] Installing perl-XML-SAX-0:1.0 100% | 1.6 MiB/s | 125.7 KiB | 00m00s >>> Running post-install scriptlet: perl-XML-SAX-0:1.02-16.fc40.noarch >>> Stop post-install scriptlet: perl-XML-SAX-0:1.02-16.fc40.noarch [314/675] Installing perltidy-0:2024051 100% | 267.6 MiB/s | 3.7 MiB | 00m00s [315/675] Installing perl-XML-LibXML-1: 100% | 7.2 MiB/s | 985.7 KiB | 00m00s >>> Running trigger-install scriptlet: perl-XML-LibXML-1:2.0210-2.fc41.i686 >>> Stop trigger-install scriptlet: perl-XML-LibXML-1:2.0210-2.fc41.i686 [316/675] Installing perl-XML-Parser-0: 100% | 108.5 MiB/s | 666.6 KiB | 00m00s [317/675] Installing perl-XML-XPath-0:1 100% | 51.1 MiB/s | 209.4 KiB | 00m00s [318/675] Installing texlive-epstopdf-1 100% | 39.6 MiB/s | 40.6 KiB | 00m00s [319/675] Installing texlive-epstopdf-p 100% | 189.4 MiB/s | 388.0 KiB | 00m00s [320/675] Installing texlive-cm-11:svn5 100% | 91.6 MiB/s | 1.0 MiB | 00m00s [321/675] Installing texlive-etex-11:sv 100% | 41.7 MiB/s | 42.7 KiB | 00m00s [322/675] Installing texlive-hyph-utf8- 100% | 74.8 MiB/s | 76.6 KiB | 00m00s [323/675] Installing texlive-hyphen-bas 100% | 64.3 MiB/s | 65.9 KiB | 00m00s [324/675] Installing texlive-knuth-lib- 100% | 34.6 MiB/s | 106.3 KiB | 00m00s [325/675] Installing texlive-plain-11:s 100% | 55.6 MiB/s | 113.8 KiB | 00m00s [326/675] Installing texlive-tex-ini-fi 100% | 9.9 MiB/s | 10.1 KiB | 00m00s [327/675] Installing texlive-unicode-da 100% | 341.2 MiB/s | 3.1 MiB | 00m00s [328/675] Installing texlive-graphics-d 100% | 97.5 MiB/s | 99.9 KiB | 00m00s [329/675] Installing texlive-texlive.in 100% | 201.4 MiB/s | 1.0 MiB | 00m00s [330/675] Installing texlive-gsftopk-11 100% | 46.6 MiB/s | 47.7 KiB | 00m00s [331/675] Installing texlive-luatex-11: 100% | 305.1 MiB/s | 9.5 MiB | 00m00s [332/675] Installing texlive-texlive-sc 100% | 68.2 MiB/s | 349.1 KiB | 00m00s [333/675] Installing texlive-kpathsea-1 100% | 258.7 MiB/s | 2.1 MiB | 00m00s [334/675] Installing texlive-iftex-11:s 100% | 29.6 MiB/s | 30.3 KiB | 00m00s [335/675] Installing texlive-amsmath-11 100% | 262.4 MiB/s | 268.7 KiB | 00m00s [336/675] Installing texlive-pdftexcmds 100% | 415.6 MiB/s | 425.6 KiB | 00m00s [337/675] Installing texlive-kvoptions- 100% | 269.3 MiB/s | 551.6 KiB | 00m00s [338/675] Installing texlive-ltxcmds-11 100% | 415.6 MiB/s | 425.5 KiB | 00m00s [339/675] Installing texlive-url-11:svn 100% | 0.0 B/s | 22.1 KiB | 00m00s [340/675] Installing texlive-atbegshi-1 100% | 144.9 MiB/s | 445.1 KiB | 00m00s [341/675] Installing texlive-amsfonts-1 100% | 154.9 MiB/s | 6.0 MiB | 00m00s [342/675] Installing texlive-booktabs-1 100% | 18.6 MiB/s | 19.0 KiB | 00m00s [343/675] Installing texlive-infwarerr- 100% | 300.3 MiB/s | 307.5 KiB | 00m00s [344/675] Installing texlive-atveryend- 100% | 133.8 MiB/s | 411.2 KiB | 00m00s [345/675] Installing texlive-babel-11:s 100% | 30.8 MiB/s | 2.2 MiB | 00m00s [346/675] Installing texlive-etex-pkg-1 100% | 0.0 B/s | 19.0 KiB | 00m00s [347/675] Installing texlive-etoolbox-1 100% | 66.1 MiB/s | 67.7 KiB | 00m00s [348/675] Installing texlive-auxhook-11 100% | 296.1 MiB/s | 303.2 KiB | 00m00s [349/675] Installing texlive-etexcmds-1 100% | 314.7 MiB/s | 322.3 KiB | 00m00s [350/675] Installing texlive-latex-font 100% | 40.4 MiB/s | 124.2 KiB | 00m00s [351/675] Installing texlive-pdfescape- 100% | 52.6 MiB/s | 377.2 KiB | 00m00s [352/675] Installing texlive-fp-11:svn4 100% | 124.9 MiB/s | 127.9 KiB | 00m00s [353/675] Installing texlive-hologo-11: 100% | 325.3 MiB/s | 666.1 KiB | 00m00s [354/675] Installing texlive-ragged2e-1 100% | 358.1 MiB/s | 733.3 KiB | 00m00s [355/675] Installing texlive-setspace-1 100% | 0.0 B/s | 22.4 KiB | 00m00s [356/675] Installing texlive-bigintcalc 100% | 252.4 MiB/s | 516.8 KiB | 00m00s [357/675] Installing texlive-graphics-c 100% | 3.8 MiB/s | 3.9 KiB | 00m00s [358/675] Installing texlive-graphics-1 100% | 62.8 MiB/s | 128.7 KiB | 00m00s [359/675] Installing texlive-tools-11:s 100% | 100.5 MiB/s | 411.7 KiB | 00m00s [360/675] Installing texlive-xkeyval-11 100% | 69.9 MiB/s | 71.6 KiB | 00m00s [361/675] Installing texlive-geometry-1 100% | 49.1 MiB/s | 50.2 KiB | 00m00s [362/675] Installing texlive-caption-11 100% | 297.1 MiB/s | 912.6 KiB | 00m00s [363/675] Installing texlive-colortbl-1 100% | 21.3 MiB/s | 21.8 KiB | 00m00s [364/675] Installing texlive-hycolor-11 100% | 403.5 MiB/s | 413.1 KiB | 00m00s [365/675] Installing texlive-intcalc-11 100% | 230.9 MiB/s | 472.8 KiB | 00m00s [366/675] Installing texlive-kvsetkeys- 100% | 418.8 MiB/s | 428.8 KiB | 00m00s [367/675] Installing texlive-l3backend- 100% | 369.0 MiB/s | 1.1 MiB | 00m00s [368/675] Installing texlive-letltxmacr 100% | 305.3 MiB/s | 312.6 KiB | 00m00s [369/675] Installing texlive-natbib-11: 100% | 131.1 MiB/s | 134.2 KiB | 00m00s [370/675] Installing texlive-uniquecoun 100% | 306.1 MiB/s | 313.5 KiB | 00m00s [371/675] Installing texlive-hypdoc-11: 100% | 351.1 MiB/s | 359.5 KiB | 00m00s [372/675] Installing texlive-footmisc-1 100% | 32.0 MiB/s | 65.6 KiB | 00m00s [373/675] Installing texlive-lm-11:svn6 100% | 304.2 MiB/s | 39.5 MiB | 00m00s [374/675] Installing texlive-multido-11 100% | 19.2 MiB/s | 19.6 KiB | 00m00s [375/675] Installing texlive-rerunfilec 100% | 177.4 MiB/s | 363.3 KiB | 00m00s [376/675] Installing texlive-subfig-11: 100% | 36.6 MiB/s | 37.5 KiB | 00m00s [377/675] Installing texlive-carlisle-1 100% | 32.0 MiB/s | 32.8 KiB | 00m00s [378/675] Installing texlive-translator 100% | 84.6 MiB/s | 519.8 KiB | 00m00s [379/675] Installing texlive-sauerj-11: 100% | 27.9 MiB/s | 28.6 KiB | 00m00s [380/675] Installing texlive-csquotes-1 100% | 110.6 MiB/s | 113.3 KiB | 00m00s [381/675] Installing texlive-bitset-11: 100% | 324.0 MiB/s | 663.5 KiB | 00m00s [382/675] Installing texlive-catchfile- 100% | 312.5 MiB/s | 320.0 KiB | 00m00s [383/675] Installing texlive-ifplatform 100% | 13.1 MiB/s | 13.5 KiB | 00m00s [384/675] Installing texlive-memoir-11: 100% | 157.4 MiB/s | 483.6 KiB | 00m00s [385/675] Installing texlive-babelbib-1 100% | 192.2 MiB/s | 787.2 KiB | 00m00s [386/675] Installing texlive-euenc-11:s 100% | 41.2 MiB/s | 42.2 KiB | 00m00s [387/675] Installing texlive-euler-11:s 100% | 20.9 MiB/s | 21.4 KiB | 00m00s [388/675] Installing texlive-everyshi-1 100% | 155.2 MiB/s | 158.9 KiB | 00m00s [389/675] Installing texlive-fancybox-1 100% | 40.5 MiB/s | 41.5 KiB | 00m00s [390/675] Installing texlive-float-11:s 100% | 0.0 B/s | 16.2 KiB | 00m00s [391/675] Installing texlive-grffile-11 100% | 371.8 MiB/s | 380.7 KiB | 00m00s [392/675] Installing texlive-index-11:s 100% | 60.7 MiB/s | 62.1 KiB | 00m00s [393/675] Installing texlive-pdflscape- 100% | 336.7 MiB/s | 344.8 KiB | 00m00s [394/675] Installing texlive-ucharcat-1 100% | 10.7 MiB/s | 10.9 KiB | 00m00s [395/675] Installing texlive-underscore 100% | 19.6 MiB/s | 20.1 KiB | 00m00s [396/675] Installing texlive-bookmark-1 100% | 279.4 MiB/s | 572.2 KiB | 00m00s [397/675] Installing texlive-fancyhdr-1 100% | 31.9 MiB/s | 32.7 KiB | 00m00s [398/675] Installing texlive-firstaid-1 100% | 145.9 MiB/s | 298.8 KiB | 00m00s [399/675] Installing texlive-gettitlest 100% | 166.1 MiB/s | 340.1 KiB | 00m00s [400/675] Installing texlive-grfext-11: 100% | 160.7 MiB/s | 329.1 KiB | 00m00s [401/675] Installing texlive-kvdefineke 100% | 308.1 MiB/s | 315.5 KiB | 00m00s [402/675] Installing texlive-latexconfi 100% | 9.6 MiB/s | 9.8 KiB | 00m00s [403/675] Installing texlive-refcount-1 100% | 341.0 MiB/s | 349.2 KiB | 00m00s [404/675] Installing texlive-stringenc- 100% | 263.5 MiB/s | 1.1 MiB | 00m00s [405/675] Installing texlive-glyphlist- 100% | 89.0 MiB/s | 91.1 KiB | 00m00s [406/675] Installing texlive-lua-alt-ge 100% | 0.0 B/s | 4.3 KiB | 00m00s [407/675] Installing texlive-modes-11:s 100% | 191.4 MiB/s | 391.9 KiB | 00m00s [408/675] Installing texlive-palatino-1 100% | 86.2 MiB/s | 1.1 MiB | 00m00s [409/675] Installing texlive-zapfding-1 100% | 40.4 MiB/s | 82.7 KiB | 00m00s [410/675] Installing texlive-zref-11:sv 100% | 267.6 MiB/s | 822.0 KiB | 00m00s [411/675] Installing texlive-marvosym-1 100% | 91.9 MiB/s | 188.3 KiB | 00m00s [412/675] Installing texlive-paralist-1 100% | 23.6 MiB/s | 24.1 KiB | 00m00s [413/675] Installing texlive-placeins-1 100% | 0.0 B/s | 5.4 KiB | 00m00s [414/675] Installing texlive-auto-pst-p 100% | 15.2 MiB/s | 15.6 KiB | 00m00s [415/675] Installing texlive-breakurl-1 100% | 0.0 B/s | 17.9 KiB | 00m00s [416/675] Installing texlive-fancyref-1 100% | 27.9 MiB/s | 28.6 KiB | 00m00s [417/675] Installing texlive-mathtools- 100% | 128.7 MiB/s | 131.8 KiB | 00m00s [418/675] Installing texlive-ltabptch-1 100% | 21.1 MiB/s | 21.6 KiB | 00m00s [419/675] Installing texlive-crop-11:sv 100% | 26.8 MiB/s | 27.4 KiB | 00m00s [420/675] Installing texlive-microtype- 100% | 151.6 MiB/s | 465.6 KiB | 00m00s [421/675] Installing texlive-pdfmanagem 100% | 481.7 MiB/s | 11.6 MiB | 00m00s [422/675] Installing texlive-psfrag-11: 100% | 12.7 MiB/s | 13.0 KiB | 00m00s [423/675] Installing texlive-logreq-11: 100% | 26.6 MiB/s | 27.2 KiB | 00m00s [424/675] Installing texlive-hopatch-11 100% | 339.1 MiB/s | 347.2 KiB | 00m00s [425/675] Installing texlive-anysize-11 100% | 0.0 B/s | 4.1 KiB | 00m00s [426/675] Installing texlive-cite-11:sv 100% | 61.7 MiB/s | 63.2 KiB | 00m00s [427/675] Installing texlive-cmap-11:sv 100% | 37.9 MiB/s | 38.8 KiB | 00m00s [428/675] Installing texlive-everysel-1 100% | 224.3 MiB/s | 459.4 KiB | 00m00s [429/675] Installing texlive-footnotehy 100% | 30.5 MiB/s | 31.3 KiB | 00m00s [430/675] Installing texlive-latexbug-1 100% | 138.6 MiB/s | 283.8 KiB | 00m00s [431/675] Installing texlive-lwarp-11:s 100% | 153.7 MiB/s | 4.9 MiB | 00m00s [432/675] Installing texlive-mdwtools-1 100% | 111.5 MiB/s | 114.2 KiB | 00m00s [433/675] Installing texlive-newfloat-1 100% | 156.0 MiB/s | 159.7 KiB | 00m00s [434/675] Installing texlive-ntgclass-1 100% | 278.5 MiB/s | 285.2 KiB | 00m00s [435/675] Installing texlive-parskip-11 100% | 16.3 MiB/s | 16.7 KiB | 00m00s [436/675] Installing texlive-pdfcolfoot 100% | 329.2 MiB/s | 337.1 KiB | 00m00s [437/675] Installing texlive-rcs-11:svn 100% | 46.6 MiB/s | 47.7 KiB | 00m00s [438/675] Installing texlive-sansmath-1 100% | 0.0 B/s | 9.3 KiB | 00m00s [439/675] Installing texlive-section-11 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [440/675] Installing texlive-sepnum-11: 100% | 0.0 B/s | 15.8 KiB | 00m00s [441/675] Installing texlive-textcase-1 100% | 11.7 MiB/s | 12.0 KiB | 00m00s [442/675] Installing texlive-babel-engl 100% | 45.4 MiB/s | 46.5 KiB | 00m00s [443/675] Installing texlive-fix2col-11 100% | 0.0 B/s | 17.4 KiB | 00m00s [444/675] Installing texlive-latex-lab- 100% | 385.1 MiB/s | 2.3 MiB | 00m00s [445/675] Installing texlive-mfnfss-11: 100% | 24.2 MiB/s | 24.7 KiB | 00m00s [446/675] Installing texlive-mptopdf-11 100% | 75.0 MiB/s | 153.5 KiB | 00m00s [447/675] Installing texlive-pagesel-11 100% | 347.7 MiB/s | 356.1 KiB | 00m00s [448/675] Installing texlive-pslatex-11 100% | 28.5 MiB/s | 29.2 KiB | 00m00s [449/675] Installing texlive-pspicture- 100% | 14.4 MiB/s | 14.7 KiB | 00m00s [450/675] Installing texlive-colorprofi 100% | 66.9 MiB/s | 274.1 KiB | 00m00s [451/675] Installing texlive-ec-11:svn2 100% | 53.3 MiB/s | 2.7 MiB | 00m00s [452/675] Installing texlive-enctex-11: 100% | 61.0 MiB/s | 187.3 KiB | 00m00s [453/675] Installing texlive-hyphenex-1 100% | 0.0 B/s | 26.1 KiB | 00m00s [454/675] Installing texlive-knuth-loca 100% | 55.2 MiB/s | 113.1 KiB | 00m00s [455/675] Installing texlive-mflogo-11: 100% | 13.3 MiB/s | 13.6 KiB | 00m00s [456/675] Installing texlive-texlive-en 100% | 395.8 MiB/s | 5.9 MiB | 00m00s [457/675] Installing texlive-texlive-ms 100% | 351.6 MiB/s | 1.4 MiB | 00m00s [458/675] Installing texlive-pdfcolmk-1 100% | 20.2 MiB/s | 20.7 KiB | 00m00s [459/675] Installing texlive-xcolor-11: 100% | 78.8 MiB/s | 80.7 KiB | 00m00s [460/675] Installing texlive-eso-pic-11 100% | 27.9 MiB/s | 28.6 KiB | 00m00s [461/675] Installing texlive-lm-math-11 100% | 179.9 MiB/s | 736.9 KiB | 00m00s [462/675] Installing texlive-avantgar-1 100% | 103.5 MiB/s | 1.2 MiB | 00m00s [463/675] Installing texlive-bookman-11 100% | 77.1 MiB/s | 1.2 MiB | 00m00s [464/675] Installing texlive-charter-11 100% | 81.1 MiB/s | 415.0 KiB | 00m00s [465/675] Installing texlive-courier-11 100% | 101.7 MiB/s | 937.1 KiB | 00m00s [466/675] Installing texlive-helvetic-1 100% | 107.5 MiB/s | 1.8 MiB | 00m00s [467/675] Installing texlive-symbol-11: 100% | 26.7 MiB/s | 82.0 KiB | 00m00s [468/675] Installing texlive-times-11:s 100% | 83.2 MiB/s | 1.0 MiB | 00m00s [469/675] Installing texlive-utopia-11: 100% | 107.7 MiB/s | 551.4 KiB | 00m00s [470/675] Installing texlive-luabidi-11 100% | 26.1 MiB/s | 26.8 KiB | 00m00s [471/675] Installing texlive-makecmds-1 100% | 11.6 MiB/s | 11.9 KiB | 00m00s [472/675] Installing texlive-dehyph-11: 100% | 235.5 MiB/s | 241.2 KiB | 00m00s [473/675] Installing texlive-parallel-1 100% | 22.8 MiB/s | 23.3 KiB | 00m00s [474/675] Installing texlive-pdfcol-11: 100% | 169.3 MiB/s | 346.8 KiB | 00m00s [475/675] Installing texlive-fpl-11:svn 100% | 212.0 MiB/s | 651.2 KiB | 00m00s [476/675] Installing texlive-mathpazo-1 100% | 57.0 MiB/s | 116.7 KiB | 00m00s [477/675] Installing texlive-psnfss-11: 100% | 23.3 MiB/s | 119.5 KiB | 00m00s [478/675] Installing texlive-ctablestac 100% | 20.4 MiB/s | 20.9 KiB | 00m00s [479/675] Installing texlive-luatexbase 100% | 14.7 MiB/s | 15.1 KiB | 00m00s [480/675] Installing texlive-lua-uni-al 100% | 128.2 MiB/s | 131.3 KiB | 00m00s [481/675] Installing texlive-lualibs-11 100% | 188.4 MiB/s | 771.6 KiB | 00m00s [482/675] Installing texlive-luaotfload 100% | 342.4 MiB/s | 8.2 MiB | 00m00s [483/675] Installing texlive-beton-11:s 100% | 12.2 MiB/s | 12.5 KiB | 00m00s [484/675] Installing texlive-finstrut-1 100% | 25.7 MiB/s | 26.4 KiB | 00m00s [485/675] Installing texlive-lineno-11: 100% | 233.2 MiB/s | 238.8 KiB | 00m00s [486/675] Installing texlive-alphalph-1 100% | 184.1 MiB/s | 377.1 KiB | 00m00s [487/675] Installing texlive-enumitem-1 100% | 58.7 MiB/s | 60.1 KiB | 00m00s [488/675] Installing texlive-marginnote 100% | 22.8 MiB/s | 23.3 KiB | 00m00s [489/675] Installing texlive-mparhack-1 100% | 20.6 MiB/s | 21.1 KiB | 00m00s [490/675] Installing texlive-picture-11 100% | 158.6 MiB/s | 324.8 KiB | 00m00s [491/675] Installing texlive-rsfs-11:sv 100% | 49.9 MiB/s | 102.2 KiB | 00m00s [492/675] Installing texlive-hobsub-11: 100% | 80.0 MiB/s | 81.9 KiB | 00m00s [493/675] Installing texlive-hyperref-1 100% | 187.8 MiB/s | 769.4 KiB | 00m00s [494/675] Installing texlive-attachfile 100% | 241.6 MiB/s | 494.8 KiB | 00m00s [495/675] Installing texlive-attachfile 100% | 32.4 MiB/s | 33.2 KiB | 00m00s [496/675] Installing texlive-kastrup-11 100% | 4.1 MiB/s | 4.2 KiB | 00m00s [497/675] Installing texlive-transparen 100% | 296.6 MiB/s | 303.7 KiB | 00m00s [498/675] Installing texlive-ctable-11: 100% | 20.9 MiB/s | 21.4 KiB | 00m00s [499/675] Installing texlive-changepage 100% | 27.6 MiB/s | 28.2 KiB | 00m00s [500/675] Installing texlive-titlesec-1 100% | 96.6 MiB/s | 98.9 KiB | 00m00s [501/675] Installing texlive-ifmtarg-11 100% | 9.7 MiB/s | 9.9 KiB | 00m00s [502/675] Installing texlive-xetexconfi 100% | 0.0 B/s | 776.0 B | 00m00s [503/675] Installing texlive-varwidth-1 100% | 19.8 MiB/s | 20.3 KiB | 00m00s [504/675] Installing texlive-fileconten 100% | 12.7 MiB/s | 13.0 KiB | 00m00s [505/675] Installing texlive-pst-math-1 100% | 23.1 MiB/s | 23.7 KiB | 00m00s [506/675] Installing texlive-notoccite- 100% | 0.0 B/s | 3.0 KiB | 00m00s [507/675] Installing texlive-xstring-11 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [508/675] Installing perl-XML-LibXML-Si 100% | 51.0 MiB/s | 52.2 KiB | 00m00s [509/675] Installing texlive-pdftex-11: 100% | 201.6 MiB/s | 4.6 MiB | 00m00s [510/675] Installing texlive-metafont-1 100% | 151.6 MiB/s | 776.1 KiB | 00m00s [511/675] Installing texlive-dvips-11:s 100% | 157.5 MiB/s | 1.6 MiB | 00m00s [512/675] Installing texlive-bibtex-11: 100% | 193.9 MiB/s | 794.2 KiB | 00m00s [513/675] Installing texlive-luahbtex-1 100% | 289.4 MiB/s | 6.7 MiB | 00m00s [514/675] Installing texlive-makeindex- 100% | 124.8 MiB/s | 511.3 KiB | 00m00s [515/675] Installing texlive-mfware-11: 100% | 69.0 MiB/s | 212.0 KiB | 00m00s [516/675] Installing texlive-tex-11:svn 100% | 188.2 MiB/s | 385.5 KiB | 00m00s [517/675] Installing texlive-xdvi-11:sv 100% | 186.7 MiB/s | 764.7 KiB | 00m00s [518/675] Installing perl-XML-LibXSLT-0 100% | 47.5 MiB/s | 145.8 KiB | 00m00s [519/675] Installing perl-Sort-Key-0:1. 100% | 41.3 MiB/s | 84.5 KiB | 00m00s [520/675] Installing perl-autovivificat 100% | 61.5 MiB/s | 63.0 KiB | 00m00s [521/675] Installing perl-IPC-SysV-0:2. 100% | 39.0 MiB/s | 79.9 KiB | 00m00s [522/675] Installing perl-Sys-Syslog-0: 100% | 47.0 MiB/s | 96.2 KiB | 00m00s [523/675] Installing perl-GSSAPI-0:0.28 100% | 45.4 MiB/s | 139.4 KiB | 00m00s [524/675] Installing perl-Authen-SASL-0 100% | 39.5 MiB/s | 121.5 KiB | 00m00s [525/675] Installing perl-LDAP-1:0.68-1 100% | 93.8 MiB/s | 960.1 KiB | 00m00s [526/675] Installing perl-Sub-Identify- 100% | 17.4 MiB/s | 35.6 KiB | 00m00s [527/675] Installing perl-XString-0:0.0 100% | 37.2 MiB/s | 38.1 KiB | 00m00s [528/675] Installing perl-Ref-Util-XS-0 100% | 23.4 MiB/s | 48.0 KiB | 00m00s [529/675] Installing perl-Ref-Util-0:0. 100% | 32.3 MiB/s | 33.1 KiB | 00m00s [530/675] Installing perl-PadWalker-0:2 100% | 44.9 MiB/s | 45.9 KiB | 00m00s [531/675] Installing perl-Devel-Caller- 100% | 27.8 MiB/s | 28.5 KiB | 00m00s [532/675] Installing perl-Devel-LexAlia 100% | 19.7 MiB/s | 20.2 KiB | 00m00s [533/675] Installing perl-Eval-Closure- 100% | 33.7 MiB/s | 34.6 KiB | 00m00s [534/675] Installing perl-Params-Valida 100% | 45.9 MiB/s | 94.1 KiB | 00m00s [535/675] Installing perl-Specio-0:0.48 100% | 55.9 MiB/s | 343.3 KiB | 00m00s [536/675] Installing perl-Hash-Util-Fie 100% | 62.1 MiB/s | 63.6 KiB | 00m00s [537/675] Installing perl-Variable-Magi 100% | 60.4 MiB/s | 123.8 KiB | 00m00s [538/675] Installing perl-B-Hooks-EndOf 100% | 24.4 MiB/s | 75.0 KiB | 00m00s [539/675] Installing perl-Package-Stash 100% | 34.3 MiB/s | 70.3 KiB | 00m00s [540/675] Installing perl-Package-Stash 100% | 28.4 MiB/s | 58.1 KiB | 00m00s [541/675] Installing perl-namespace-cle 100% | 21.7 MiB/s | 44.5 KiB | 00m00s [542/675] Installing perl-namespace-aut 100% | 41.5 MiB/s | 42.5 KiB | 00m00s [543/675] Installing perl-Log-Dispatch- 100% | 18.2 MiB/s | 149.4 KiB | 00m00s [544/675] Installing perl-DateTime-Loca 100% | 137.8 MiB/s | 22.7 MiB | 00m00s [545/675] Installing perl-Log-Dispatch- 100% | 26.6 MiB/s | 54.4 KiB | 00m00s [546/675] Installing perl-DateTime-Time 100% | 220.2 MiB/s | 6.4 MiB | 00m00s [547/675] Installing perl-DateTime-2:1. 100% | 127.2 MiB/s | 390.9 KiB | 00m00s [548/675] Installing perl-DateTime-Cale 100% | 33.5 MiB/s | 34.3 KiB | 00m00s [549/675] Installing perl-DateTime-Form 100% | 48.1 MiB/s | 98.6 KiB | 00m00s [550/675] Installing perl-DateTime-Form 100% | 41.5 MiB/s | 212.7 KiB | 00m00s [551/675] Installing perl-Log-Log4perl- 100% | 109.3 MiB/s | 895.6 KiB | 00m00s [552/675] Installing brotli-0:1.1.0-4.f 100% | 27.0 MiB/s | 27.6 KiB | 00m00s [553/675] Installing brotli-devel-0:1.1 100% | 66.4 MiB/s | 68.0 KiB | 00m00s [554/675] Installing libubsan-0:14.1.1- 100% | 175.6 MiB/s | 539.4 KiB | 00m00s [555/675] Installing libatomic-0:14.1.1 100% | 0.0 B/s | 28.2 KiB | 00m00s [556/675] Installing libasan-0:14.1.1-7 100% | 284.6 MiB/s | 1.7 MiB | 00m00s [557/675] Installing gc-0:8.2.6-1.fc41. 100% | 62.0 MiB/s | 253.9 KiB | 00m00s [558/675] Installing guile30-0:3.0.9-1. 100% | 281.5 MiB/s | 48.4 MiB | 00m00s [559/675] Installing make-1:4.4.1-6.fc4 100% | 164.8 MiB/s | 1.8 MiB | 00m00s [560/675] Installing gcc-0:14.1.1-7.fc4 100% | 307.4 MiB/s | 101.8 MiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch [561/675] Installing libquadmath-devel- 100% | 22.7 MiB/s | 23.3 KiB | 00m00s [562/675] Installing gcc-gfortran-0:14. 100% | 297.2 MiB/s | 37.7 MiB | 00m00s [563/675] Installing gcc-c++-0:14.1.1-7 100% | 296.8 MiB/s | 38.9 MiB | 00m00s [564/675] Installing libX11-xcb-0:1.8.9 100% | 7.4 MiB/s | 15.1 KiB | 00m00s [565/675] Installing libX11-devel-0:1.8 100% | 33.9 MiB/s | 1.1 MiB | 00m00s [566/675] Installing libXrender-devel-0 100% | 49.8 MiB/s | 50.9 KiB | 00m00s [567/675] Installing libXext-devel-0:1. 100% | 36.1 MiB/s | 110.9 KiB | 00m00s [568/675] Installing libdatrie-0:0.2.13 100% | 56.9 MiB/s | 58.3 KiB | 00m00s [569/675] Installing libthai-0:0.1.29-8 100% | 255.4 MiB/s | 784.5 KiB | 00m00s [570/675] Installing sombok-0:2.4.0-21. 100% | 133.4 MiB/s | 136.6 KiB | 00m00s [571/675] Installing perl-Unicode-LineB 100% | 66.8 MiB/s | 273.5 KiB | 00m00s [572/675] Installing biber-0:2.19-5.fc4 100% | 167.4 MiB/s | 1.3 MiB | 00m00s [573/675] Installing texlive-xunicode-1 100% | 107.6 MiB/s | 220.3 KiB | 00m00s [574/675] Installing texlive-tipa-11:sv 100% | 210.7 MiB/s | 3.8 MiB | 00m00s [575/675] Installing texlive-algorithms 100% | 6.4 MiB/s | 39.1 KiB | 00m00s [576/675] Installing texlive-cm-super-1 100% | 394.8 MiB/s | 65.1 MiB | 00m00s [577/675] Installing texlive-xifthen-11 100% | 14.8 MiB/s | 15.2 KiB | 00m00s [578/675] Installing texlive-bera-11:sv 100% | 110.4 MiB/s | 791.2 KiB | 00m00s [579/675] Installing texlive-currfile-1 100% | 34.1 MiB/s | 35.0 KiB | 00m00s [580/675] Installing texlive-filehook-1 100% | 27.9 MiB/s | 57.2 KiB | 00m00s [581/675] Installing texlive-pgf-11:svn 100% | 99.5 MiB/s | 4.9 MiB | 00m00s [582/675] Installing texlive-ms-11:svn5 100% | 18.8 MiB/s | 19.3 KiB | 00m00s [583/675] Installing texlive-koma-scrip 100% | 354.7 MiB/s | 9.9 MiB | 00m00s [584/675] Installing texlive-bidi-11:sv 100% | 119.2 MiB/s | 1.2 MiB | 00m00s [585/675] Installing texlive-showexpl-1 100% | 22.0 MiB/s | 22.6 KiB | 00m00s [586/675] Installing texlive-listings-1 100% | 189.7 MiB/s | 582.9 KiB | 00m00s [587/675] Installing texlive-polyglossi 100% | 57.4 MiB/s | 764.6 KiB | 00m00s [588/675] Installing texlive-fontspec-1 100% | 322.8 MiB/s | 330.6 KiB | 00m00s [589/675] Installing texlive-l3packages 100% | 129.6 MiB/s | 265.5 KiB | 00m00s [590/675] Installing texlive-xpatch-11: 100% | 26.9 MiB/s | 27.5 KiB | 00m00s [591/675] Installing texlive-l3kernel-1 100% | 272.5 MiB/s | 1.4 MiB | 00m00s [592/675] Installing texlive-latex-11:s 100% | 428.6 MiB/s | 40.3 MiB | 00m00s [593/675] Installing texlive-biblatex-1 100% | 198.4 MiB/s | 2.2 MiB | 00m00s [594/675] Installing texlive-fancyvrb-1 100% | 65.9 MiB/s | 67.5 KiB | 00m00s [595/675] Installing texlive-pst-ovl-11 100% | 13.4 MiB/s | 13.8 KiB | 00m00s [596/675] Installing texlive-pst-3d-11: 100% | 20.4 MiB/s | 20.9 KiB | 00m00s [597/675] Installing texlive-pst-coil-1 100% | 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Installing annobin-plugin-gcc 100% | 35.3 MiB/s | 976.9 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [675/675] Installing gcc-plugin-annobin 100% | 967.0 B/s | 57.3 KiB | 01m01s >>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch >>> Running post-transaction scriptlet: texlive-base-11:20230311-84.fc41.i686 >>> Stop post-transaction scriptlet: texlive-base-11:20230311-84.fc41.i686 >>> Running post-transaction scriptlet: 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Warning: skipped PGP checks for 673 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: build setup for R-Biostrings-2.64.1-9.fc41.src.rpm Start: rpmbuild R-Biostrings-2.64.1-9.fc41.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1721174400 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.QUAxKU + umask 022 + cd /builddir/build/BUILD/R-Biostrings-2.64.1-build + test -d /builddir/build/BUILD/R-Biostrings-2.64.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-Biostrings-2.64.1-build + /usr/bin/rm -rf /builddir/build/BUILD/R-Biostrings-2.64.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/R-Biostrings-2.64.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/R-Biostrings-2.64.1-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Dgwu7b + umask 022 + cd /builddir/build/BUILD/R-Biostrings-2.64.1-build + cd /builddir/build/BUILD/R-Biostrings-2.64.1-build + rm -rf Biostrings + /usr/bin/mkdir -p Biostrings + cd Biostrings + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Biostrings_2.64.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.dcdFsC + umask 022 + cd /builddir/build/BUILD/R-Biostrings-2.64.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Biostrings + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.tsiTNU + umask 022 + cd /builddir/build/BUILD/R-Biostrings-2.64.1-build + '[' /builddir/build/BUILD/R-Biostrings-2.64.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/R-Biostrings-2.64.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/R-Biostrings-2.64.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/R-Biostrings-2.64.1-build + mkdir /builddir/build/BUILD/R-Biostrings-2.64.1-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Biostrings + rm -rf /builddir/build/BUILD/R-Biostrings-2.64.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/R-Biostrings-2.64.1-build/BUILDROOT/usr/lib/R/library + R CMD INSTALL Biostrings -l /builddir/build/BUILD/R-Biostrings-2.64.1-build/BUILDROOT/usr/lib/R/library * installing *source* package ‘Biostrings’ ... ** using staged installation ** libs using C compiler: ‘gcc (GCC) 14.1.1 20240701 (Red Hat 14.1.1-7)’ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c BAB_class.c -o BAB_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c BitMatrix.c -o BitMatrix.o BitMatrix.c:299:13: warning: ‘BitMatrix_print’ defined but not used [-Wunused-function] 299 | static void BitMatrix_print(BitMatrix *bitmat) | ^~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c IRanges_stubs.c -o IRanges_stubs.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c MIndex_class.c -o MIndex_class.o MIndex_class.c: In function ‘SparseMIndex_endIndex’: MIndex_class.c:184:27: warning: unused variable ‘poffsets_order’ [-Wunused-variable] 184 | IntAE *poffsets, *poffsets_order; | ^~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c PreprocessedTB_class.c -o PreprocessedTB_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c R_init_Biostrings.c -o R_init_Biostrings.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c RoSeqs_utils.c -o RoSeqs_utils.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c SparseList_utils.c -o SparseList_utils.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c XStringSetList_class.c -o XStringSetList_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c XStringSet_class.c -o XStringSet_class.o XStringSet_class.c: In function ‘new_XStringSet_from_CHARACTER’: XStringSet_class.c:124:17: warning: ‘lkup_len’ may be used uninitialized [-Wmaybe-uninitialized] 124 | _copy_CHARSXP_to_Chars_holder(&ans_elt_holder, x_elt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | INTEGER(start)[i], lkup0, lkup_len); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ XStringSet_class.c:103:22: note: ‘lkup_len’ was declared here 103 | int ans_len, lkup_len, i; | ^~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c XString_class.c -o XString_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c XVector_stubs.c -o XVector_stubs.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c align_needwunsQS.c -o align_needwunsQS.o align_needwunsQS.c: In function ‘align_needwunsQS’: align_needwunsQS.c:155:29: warning: ‘sc’ may be used uninitialized [-Wmaybe-uninitialized] 155 | INTEGER(ans_elt)[0] = score; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ align_needwunsQS.c:27:19: note: ‘sc’ was declared here 27 | int *sco, sc, n1, n2, i1, i2, j1, j2, al_buf_size; | ^~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c align_pairwiseAlignment.c -o align_pairwiseAlignment.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c align_utils.c -o align_utils.o align_utils.c: In function ‘PairwiseAlignmentsSingleSubject_align_aligned’: align_utils.c:232:78: warning: ‘indelStartPattern’ may be used uninitialized [-Wmaybe-uninitialized] 232 | if ((numberOfIndelPattern == 0) || (jPattern < indelStartPattern)) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ align_utils.c:221:21: note: ‘indelStartPattern’ was declared here 221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject; | ^~~~~~~~~~~~~~~~~ align_utils.c:238:55: warning: ‘indelWidthPattern’ may be used uninitialized [-Wmaybe-uninitialized] 238 | for (k = 0; k < indelWidthPattern; k++) { | ~~^~~~~~~~~~~~~~~~~~~ align_utils.c:221:40: note: ‘indelWidthPattern’ was declared here 221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject; | ^~~~~~~~~~~~~~~~~ align_utils.c:231:63: warning: ‘indelStartSubject’ may be used uninitialized [-Wmaybe-uninitialized] 231 | if ((numberOfIndelSubject == 0) || (j < indelStartSubject)) { | ~~~^~~~~~~~~~~~~~~~~~~~ align_utils.c:221:59: note: ‘indelStartSubject’ was declared here 221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject; | ^~~~~~~~~~~~~~~~~ align_utils.c:250:42: warning: ‘indelWidthSubject’ may be used uninitialized [-Wmaybe-uninitialized] 250 | jPattern += indelWidthSubject; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ align_utils.c:221:78: note: ‘indelWidthSubject’ was declared here 221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject; | ^~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c find_palindromes.c -o find_palindromes.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c gtestsim.c -o gtestsim.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c inject_code.c -o inject_code.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c letter_frequency.c -o letter_frequency.o letter_frequency.c: In function ‘XString_letterFrequencyInSlidingView’: letter_frequency.c:536:31: warning: too many arguments for format [-Wformat-extra-args] 536 | error("Biostrings internal error in " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ letter_frequency.c: In function ‘XStringSet_letterFrequency’: letter_frequency.c:589:31: warning: too many arguments for format [-Wformat-extra-args] 589 | error("Biostrings internal error in " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ letter_frequency.c: In function ‘XStringSet_two_way_letter_frequency’: letter_frequency.c:957:48: warning: unused variable ‘x_pos’ [-Wunused-variable] 957 | int x_width, y_width, x_length, *ans_mat, i, x_pos; | ^~~~~ letter_frequency.c:956:13: warning: unused variable ‘ans_dimnames’ [-Wunused-variable] 956 | SEXP ans, ans_dimnames; | ^~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c lowlevel_matching.c -o lowlevel_matching.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_PWM.c -o match_PWM.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_pattern.c -o match_pattern.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_pattern_boyermoore.c -o match_pattern_boyermoore.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_pattern_indels.c -o match_pattern_indels.o match_pattern_indels.c:7:13: warning: ‘test_match_pattern_indels’ defined but not used [-Wunused-function] 7 | static void test_match_pattern_indels(const char *p, const char *s, | ^~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_pattern_shiftor.c -o match_pattern_shiftor.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_pdict.c -o match_pdict.o In function ‘vcount_PDict3Parts_XStringSet’, inlined from ‘vmatch_PDict3Parts_XStringSet’ at match_pdict.c:508:10: match_pdict.c:419:33: warning: ‘ans_col’ may be used uninitialized [-Wmaybe-uninitialized] 419 | ans_col += tb_length; | ~~~~~~~~^~~~~~~~~~~~ match_pdict.c: In function ‘vmatch_PDict3Parts_XStringSet’: match_pdict.c:392:65: note: ‘ans_col’ was declared here 392 | int tb_length, S_length, collapse0, i, j, match_count, *ans_col; | ^~~~~~~ In function ‘vcount_XStringSet_XStringSet’, inlined from ‘vmatch_XStringSet_XStringSet’ at match_pdict.c:542:10: match_pdict.c:470:41: warning: ‘ans_elt’ may be used uninitialized [-Wmaybe-uninitialized] 470 | ans_elt += P_length; | ~~~~~~~~^~~~~~~~~~~ match_pdict.c: In function ‘vmatch_XStringSet_XStringSet’: match_pdict.c:441:64: note: ‘ans_elt’ was declared here 441 | int P_length, S_length, collapse0, i, j, match_count, *ans_elt; | ^~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_pdict_ACtree2.c -o match_pdict_ACtree2.o match_pdict_ACtree2.c: In function ‘ACtree2_summary’: match_pdict_ACtree2.c:732:45: warning: unknown conversion type character ‘)’ in format [-Wformat=] 732 | Rprintf("| - %u nodes (%.2f%) with %d links\n", | ^ match_pdict_ACtree2.c: In function ‘split_and_move_pointers’: match_pdict_ACtree2.c:1031:17: warning: variable ‘node0’ set but not used [-Wunused-but-set-variable] 1031 | ACnode *node0, *node1, *node2; | ^~~~~ match_pdict_ACtree2.c: In function ‘merge_pointers’: match_pdict_ACtree2.c:1076:17: warning: variable ‘node0’ set but not used [-Wunused-but-set-variable] 1076 | ACnode *node0, *node1, *node2; | ^~~~~ match_pdict_ACtree2.c: At top level: match_pdict_ACtree2.c:602:21: warning: ‘a_nice_max_nodeextbuf_nelt’ defined but not used [-Wunused-function] 602 | static unsigned int a_nice_max_nodeextbuf_nelt(int nnodes) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ match_pdict_ACtree2.c:139:13: warning: ‘debug_node_counting_functions’ defined but not used [-Wunused-function] 139 | static void debug_node_counting_functions(int maxdepth) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_pdict_Twobit.c -o match_pdict_Twobit.o In file included from /usr/include/R/Rdefines.h:41, from /usr/lib/R/library/S4Vectors/include/S4Vectors_defines.h:18, from /usr/lib/R/library/IRanges/include/IRanges_defines.h:18, from ../inst/include/Biostrings_defines.h:18, from Biostrings.h:1, from match_pdict_Twobit.c:10: In function ‘Twobit_asLIST’, inlined from ‘build_Twobit’ at match_pdict_Twobit.c:145:2: match_pdict_Twobit.c:75:27: warning: ‘twobit_sign2pos’ may be used uninitialized [-Wmaybe-uninitialized] 75 | PROTECT(ans_elt = new_XInteger_from_tag("XInteger", twobit_sign2pos)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ match_pdict_Twobit.c: In function ‘build_Twobit’: match_pdict_Twobit.c:110:19: note: ‘twobit_sign2pos’ was declared here 110 | SEXP ans, twobit_sign2pos; | ^~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_pdict_utils.c -o match_pdict_utils.o match_pdict_utils.c: In function ‘match_ppheadtail0’: match_pdict_utils.c:653:56: warning: unused variable ‘ncol’ [-Wunused-variable] 653 | int nelt, min_safe_tb_end, max_safe_tb_end, j, ncol; | ^~~~ match_pdict_utils.c: In function ‘match_ppheadtail’: match_pdict_utils.c:713:13: warning: unused variable ‘nelt’ [-Wunused-variable] 713 | int nelt, nkey0, nkey1, nkey2, i, key; | ^~~~ match_pdict_utils.c: In function ‘_match_pdict_all_flanks’: match_pdict_utils.c:820:51: warning: unused variable ‘subtotal_NFC’ [-Wunused-variable] 820 | static unsigned long int total_NFC = 0UL, subtotal_NFC = 0UL; | ^~~~~~~~~~~~ match_pdict_utils.c:820:34: warning: unused variable ‘total_NFC’ [-Wunused-variable] 820 | static unsigned long int total_NFC = 0UL, subtotal_NFC = 0UL; | ^~~~~~~~~ match_pdict_utils.c:819:40: warning: unused variable ‘NFC’ [-Wunused-variable] 819 | unsigned long int ndup, nloci, NFC; // NFC = Number of Flank Comparisons | ^~~ match_pdict_utils.c:819:33: warning: unused variable ‘nloci’ [-Wunused-variable] 819 | unsigned long int ndup, nloci, NFC; // NFC = Number of Flank Comparisons | ^~~~~ match_pdict_utils.c:819:27: warning: unused variable ‘ndup’ [-Wunused-variable] 819 | unsigned long int ndup, nloci, NFC; // NFC = Number of Flank Comparisons | ^~~~ match_pdict_utils.c: At top level: match_pdict_utils.c:261:13: warning: ‘match_headtail_by_loc’ defined but not used [-Wunused-function] 261 | static void match_headtail_by_loc(const HeadTail *headtail, | ^~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_reporting.c -o match_reporting.o match_reporting.c: In function ‘_new_MatchBuf’: match_reporting.c:49:23: warning: too many arguments for format [-Wformat-extra-args] 49 | error("Biostrings internal error in _new_MatchBuf(): ", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c matchprobes.c -o matchprobes.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c pmatchPattern.c -o pmatchPattern.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c read_fasta_files.c -o read_fasta_files.o In function ‘new_FASTAloaderExt’, inlined from ‘read_fasta_files’ at read_fasta_files.c:430:15: read_fasta_files.c:186:16: warning: ‘loader_ext.seq_elt_holder.ptr’ may be used uninitialized [-Wmaybe-uninitialized] 186 | return loader_ext; | ^~~~~~~~~~ read_fasta_files.c: In function ‘read_fasta_files’: read_fasta_files.c:182:24: note: ‘loader_ext’ declared here 182 | FASTAloaderExt loader_ext; | ^~~~~~~~~~ In function ‘new_FASTAloaderExt’, inlined from ‘read_fasta_files’ at read_fasta_files.c:430:15: read_fasta_files.c:186:16: warning: ‘loader_ext.seq_elt_holder.length’ may be used uninitialized [-Wmaybe-uninitialized] 186 | return loader_ext; | ^~~~~~~~~~ read_fasta_files.c: In function ‘read_fasta_files’: read_fasta_files.c:182:24: note: ‘loader_ext’ declared here 182 | FASTAloaderExt loader_ext; | ^~~~~~~~~~ In function ‘new_FASTAloaderExt’, inlined from ‘read_fasta_blocks’ at read_fasta_files.c:596:15: read_fasta_files.c:186:16: warning: ‘loader_ext.seq_elt_holder.ptr’ is used uninitialized [-Wuninitialized] 186 | return loader_ext; | ^~~~~~~~~~ read_fasta_files.c: In function ‘read_fasta_blocks’: read_fasta_files.c:182:24: note: ‘loader_ext’ declared here 182 | FASTAloaderExt loader_ext; | ^~~~~~~~~~ In function ‘new_FASTAloaderExt’, inlined from ‘read_fasta_blocks’ at read_fasta_files.c:596:15: read_fasta_files.c:186:16: warning: ‘loader_ext.seq_elt_holder.length’ is used uninitialized [-Wuninitialized] 186 | return loader_ext; | ^~~~~~~~~~ read_fasta_files.c: In function ‘read_fasta_blocks’: read_fasta_files.c:182:24: note: ‘loader_ext’ declared here 182 | FASTAloaderExt loader_ext; | ^~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c read_fastq_files.c -o read_fastq_files.o read_fastq_files.c: In function ‘parse_FASTQ_file’: read_fastq_files.c:406:28: warning: ‘dont_load’ may be used uninitialized [-Wmaybe-uninitialized] 406 | if (dont_load || loader->new_qualid_hook == NULL) | ^ read_fastq_files.c:309:26: note: ‘dont_load’ was declared here 309 | lineinrecno, dont_load; | ^~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c replaceAt.c -o replaceAt.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c replace_letter_at.c -o replace_letter_at.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c strutils.c -o strutils.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c translate.c -o translate.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c unstrsplit_methods.c -o unstrsplit_methods.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c utils.c -o utils.o utils.c: In function ‘_get_twobit_signature’: utils.c:157:16: warning: ‘twobit_sign’ may be used uninitialized [-Wmaybe-uninitialized] 157 | return twobit_sign; | ^~~~~~~~~~~ utils.c:150:16: note: ‘twobit_sign’ was declared here 150 | int i, twobit_sign; | ^~~~~~~~~~~ utils.c: In function ‘_get_twobit_signature_at’: utils.c:174:16: warning: ‘twobit_sign’ may be used uninitialized [-Wmaybe-uninitialized] 174 | return twobit_sign; | ^~~~~~~~~~~ utils.c:164:19: note: ‘twobit_sign’ was declared here 164 | int i, j, twobit_sign; | ^~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c xscat.c -o xscat.o In file included from /usr/include/R/Rdefines.h:41, from /usr/lib/R/library/S4Vectors/include/S4Vectors_defines.h:18, from /usr/lib/R/library/IRanges/include/IRanges_defines.h:18, from ../inst/include/Biostrings_defines.h:18, from Biostrings.h:1, from xscat.c:1: xscat.c: In function ‘XString_xscat’: /usr/include/R/Rdefines.h:91:33: warning: ‘ans_length’ may be used uninitialized [-Wmaybe-uninitialized] 91 | #define NEW_RAW(n) Rf_allocVector(RAWSXP,n) | ^~~~~~~~~~~~~~~~~~~~~~~~ xscat.c:18:20: note: ‘ans_length’ was declared here 18 | int nargs, ans_length, tag_offset, j; | ^~~~~~~~~~ xscat.c:52:23: warning: ‘ans_classname’ may be used uninitialized [-Wmaybe-uninitialized] 52 | PROTECT(ans = new_XRaw_from_tag(ans_classname, ans_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xscat.c:20:21: note: ‘ans_classname’ was declared here 20 | const char *ans_classname; | ^~~~~~~~~~~~~ xscat.c: In function ‘XStringSet_xscat’: /usr/include/R/Rdefines.h:85:33: warning: ‘ans_length’ may be used uninitialized [-Wmaybe-uninitialized] 85 | #define NEW_INTEGER(n) Rf_allocVector(INTSXP,n) | ^~~~~~~~~~~~~~~~~~~~~~~~ xscat.c:66:39: note: ‘ans_length’ was declared here 66 | int nargs, *arg_lengths, *ii, ans_length, i, j, *width; | ^~~~~~~~~~ xscat.c:108:23: warning: ‘ans_element_type’ may be used uninitialized [-Wmaybe-uninitialized] 108 | PROTECT(ans = _alloc_XStringSet(ans_element_type, ans_width)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xscat.c:68:21: note: ‘ans_element_type’ was declared here 68 | const char *ans_element_type; | ^~~~~~~~~~~~~~~~ gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o Biostrings.so BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o read_fasta_files.o read_fastq_files.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o -L/usr/lib/R/lib -lR installing to /builddir/build/BUILD/R-Biostrings-2.64.1-build/BUILDROOT/usr/lib/R/library/00LOCK-Biostrings/00new/Biostrings/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for ‘twoWayAlphabetFrequencyByQuality’ with signature ‘"QualityScaledXStringSet"’: no definition for class “QualityScaledXStringSet” Creating a new generic function for ‘strsplit’ in package ‘Biostrings’ Creating a generic function for ‘ls’ from package ‘base’ in package ‘Biostrings’ Creating a new generic function for ‘pattern’ in package ‘Biostrings’ Creating a new generic function for ‘offset’ in package ‘Biostrings’ ** help *** installing help indices converting help for package ‘Biostrings’ finding HTML links ... done AAString-class html AMINO_ACID_CODE html AlignedXStringSet-class html Biostrings-internals html DNAString-class html GENETIC_CODE html HNF4alpha html IUPAC_CODE_MAP html InDel-class html MIndex-class html MaskedXString-class html MultipleAlignment-class html finding level-2 HTML links ... done PDict-class html PairwiseAlignments-class html PairwiseAlignments-io html QualityScaledXStringSet-class html RNAString-class html XString-class html XStringPartialMatches-class html XStringQuality-class html XStringSet-class html XStringSet-comparison html XStringSet-io html XStringSetList-class html XStringViews-class html align-utils html chartr html detail html dinucleotideFrequencyTest html findPalindromes html getSeq html gregexpr2 html injectHardMask html letter html letterFrequency html longestConsecutive html lowlevel-matching html maskMotif html match-utils html matchLRPatterns html matchPDict-exact html matchPDict-inexact html matchPWM html matchPattern html matchProbePair html matchprobes html misc html needwunsQS html nucleotideFrequency html padAndClip html pairwiseAlignment html phiX174Phage html pid html pmatchPattern html replaceAt html replaceLetterAt html reverseComplement html seqinfo html stringDist html substitution_matrices html toComplex html translate html trimLRPatterns html xscat html yeastSEQCHR1 html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Biostrings) + test -d Biostrings/src + cd Biostrings/src + rm -f BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o read_fasta_files.o read_fastq_files.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o Biostrings.so + rm -rf /builddir/build/BUILD/R-Biostrings-2.64.1-build/BUILDROOT/usr/lib/R/library/R.css + rm -f /builddir/build/BUILD/R-Biostrings-2.64.1-build/BUILDROOT/usr/lib/R/library/Biostrings/doc/GenomeSearching.R + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.64.1-9.fc41 --unique-debug-suffix -2.64.1-9.fc41.i386 --unique-debug-src-base R-Biostrings-2.64.1-9.fc41.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/R-Biostrings-2.64.1-build/Biostrings find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-Biostrings-2.64.1-9.fc41.i386 807 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/R-Biostrings-2.64.1-build/BUILDROOT Scanned 30 directories and 1127 files, processed 1006 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/R-Biostrings-2.64.1-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.JDmpjz + umask 022 + cd /builddir/build/BUILD/R-Biostrings-2.64.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Biostrings + RPM_EC=0 Processing files: R-Biostrings-2.64.1-9.fc41.i686 ++ jobs -p + exit 0 Provides: R(Biostrings) = 2.64.1 R-Biostrings = 2.64.1-9.fc41 R-Biostrings(x86-32) = 2.64.1-9.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(ABI) = 4.4 R(BiocGenerics) >= 0.37.0 R(GenomeInfoDb) R(IRanges) >= 2.30.1 R(S4Vectors) >= 0.27.12 R(XVector) >= 0.29.2 R(crayon) R(grDevices) R(graphics) R(methods) R(stats) R(utils) R-core >= 4.0.0 libR.so libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libc.so.6(GLIBC_ABI_DT_RELR) rtld(GNU_HASH) Suggests: R(BSgenome) >= 1.13.14 R(BSgenome.Celegans.UCSC.ce2) >= 1.3.11 R(BSgenome.Dmelanogaster.UCSC.dm3) >= 1.3.11 R(BSgenome.Hsapiens.UCSC.hg18) R(GenomicFeatures) >= 1.3.14 R(RUnit) R(affy) >= 1.41.3 R(affydata) >= 1.11.5 R(drosophila2probe) R(hgu133aprobe) R(hgu95av2cdf) R(hgu95av2probe) Enhances: R(Rmpi) Processing files: R-Biostrings-devel-2.64.1-9.fc41.i686 Provides: R-Biostrings-devel = 2.64.1-9.fc41 R-Biostrings-devel(x86-32) = 2.64.1-9.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Biostrings-debugsource-2.64.1-9.fc41.i686 Provides: R-Biostrings-debugsource = 2.64.1-9.fc41 R-Biostrings-debugsource(x86-32) = 2.64.1-9.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Biostrings-debuginfo-2.64.1-9.fc41.i686 Provides: R-Biostrings-debuginfo = 2.64.1-9.fc41 R-Biostrings-debuginfo(x86-32) = 2.64.1-9.fc41 debuginfo(build-id) = 535e3ee8550e21469e4677d148405bf37d54969b Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-Biostrings-debugsource(x86-32) = 2.64.1-9.fc41 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/R-Biostrings-2.64.1-build/BUILDROOT Wrote: /builddir/build/RPMS/R-Biostrings-debuginfo-2.64.1-9.fc41.i686.rpm Wrote: /builddir/build/RPMS/R-Biostrings-debugsource-2.64.1-9.fc41.i686.rpm Wrote: /builddir/build/RPMS/R-Biostrings-devel-2.64.1-9.fc41.i686.rpm Wrote: /builddir/build/RPMS/R-Biostrings-2.64.1-9.fc41.i686.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.BsQJzZ + umask 022 + cd /builddir/build/BUILD/R-Biostrings-2.64.1-build + test -d /builddir/build/BUILD/R-Biostrings-2.64.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-Biostrings-2.64.1-build + rm -rf /builddir/build/BUILD/R-Biostrings-2.64.1-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild R-Biostrings-2.64.1-9.fc41.src.rpm Finish: build phase for R-Biostrings-2.64.1-9.fc41.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1721233137.854536/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/R-Biostrings-2.64.1-9.fc41.src.rpm) Config(child) 2 minutes 9 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-Biostrings-debugsource", "epoch": null, "version": "2.64.1", "release": "9.fc41", "arch": "i686" }, { "name": "R-Biostrings-devel", "epoch": null, "version": "2.64.1", "release": "9.fc41", "arch": "i686" }, { "name": "R-Biostrings", "epoch": null, "version": "2.64.1", "release": "9.fc41", "arch": "src" }, { "name": "R-Biostrings", "epoch": null, "version": "2.64.1", "release": "9.fc41", "arch": "i686" }, { "name": "R-Biostrings-debuginfo", "epoch": null, "version": "2.64.1", "release": "9.fc41", "arch": "i686" } ] } RPMResults finished