Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c10e' (ED25519) to the list of known hosts. INFO: Calling: curl -H Pragma: -o libghemical-3.0.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/libghemical/libghemical-3.0.0.tar.gz/md5/1d5c9c19bb119470d2bb41a7e681eafd/libghemical-3.0.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 769k 100 769k 0 0 9725k 0 --:--:-- --:--:-- --:--:-- 9740k INFO: Reading stdout from command: md5sum libghemical-3.0.0.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-2nvs_s6r/libghemical/libghemical.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-2nvs_s6r/libghemical --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1721329343.891941 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-2nvs_s6r/libghemical/libghemical.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-2nvs_s6r/libghemical --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1721329343.891941 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-2nvs_s6r/libghemical/libghemical.spec) Config(fedora-rawhide-i686) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1721329343.891941/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-i686-bootstrap-1721329343.891941/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/b24bdd3edc7bddb35a7c0fcda54368b23025b8dc8fb713bb3c26293c9ea25e5a/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/b24bdd3edc7bddb35a7c0fcda54368b23025b8dc8fb713bb3c26293c9ea25e5a/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf5 tooling Updating and loading repositories: local 100% | 33.8 MiB/s | 14.1 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 36.8 MiB/s | 14.1 MiB | 00m00s Copr repository 100% | 8.9 MiB/s | 3.0 MiB | 00m00s Repositories loaded. Package "dnf5-5.2.4.0-1.fc41.x86_64" is already installed. Package "dnf5-plugins-5.2.4.0-1.fc41.x86_64" is already installed. Nothing to do. Finish(bootstrap): installing dnf5 tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1721329343.891941/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-2.fc41.x86_64 rpm-sequoia-1.7.0-1.fc41.x86_64 dnf5-5.2.4.0-1.fc41.x86_64 dnf5-plugins-5.2.4.0-1.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: local 100% | 99.9 KiB/s | 3.5 KiB | 00m00s Copr repository 100% | 48.0 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 75.0 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 17.1 MiB/s | 3.0 MiB | 00m00s Repositories loaded. 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ocaml-srpm-macros noarch 10-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB openblas-srpm-macros noarch 2-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0 B openldap i686 2.6.8-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 669.4 KiB openssl-libs i686 1:3.2.2-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.3 MiB p11-kit i686 0.25.5-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB p11-kit-trust i686 0.25.5-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 361.6 KiB package-notes-srpm-macros noarch 0.5-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam i686 1.6.1-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB pam-libs i686 1.6.1-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 120.7 KiB pcre2 i686 10.44-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 660.0 KiB pcre2-syntax noarch 10.44-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-55.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf i686 2.1.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.3 KiB pkgconf-m4 noarch 2.1.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13.9 KiB pkgconf-pkg-config i686 2.1.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 979.0 B popt i686 1.19-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 135.9 KiB publicsuffix-list-dafsa noarch 20240107-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.13.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 KiB python-srpm-macros noarch 3.13-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.14-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.7.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline i686 8.2-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 457.5 KiB rpm i686 4.19.92-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB rpm-build-libs i686 4.19.92-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.4 KiB rpm-libs i686 4.19.92-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 756.9 KiB rpm-sequoia i686 1.7.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB rust-srpm-macros noarch 26.3-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs i686 3.46.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB systemd-libs i686 256.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB util-linux-core i686 2.40.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB xxhash-libs i686 0.8.2-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 115.8 KiB xz-libs i686 1:5.6.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 229.8 KiB zig-srpm-macros noarch 1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip i686 3.0-40.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 707.0 KiB zlib-ng-compat i686 2.1.7-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.4 KiB zstd i686 1.5.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB Installing groups: build Transaction Summary: Installing: 154 packages Total size of inbound packages is 53 MiB. Need to download 0 B. After this operation 175 MiB will be used (install 175 MiB, remove 0 B). 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libevent-0:2.1.12-13.fc41.i68 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [151/154] libtool-ltdl-0:2.4.7-11.fc41. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [152/154] libssh-config-0:0.10.6-6.fc41 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [153/154] libunistring-0:1.1-7.fc41.i68 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [154/154] publicsuffix-list-dafsa-0:202 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [154/154] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction [ 1/156] Verify package files 100% | 758.0 B/s | 154.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-9.fc41.i686 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-9.fc41.i686 [ 2/156] Prepare transaction 100% | 1.7 KiB/s | 154.0 B | 00m00s [ 3/156] Installing libgcc-0:14.1.1-7. 100% | 148.1 MiB/s | 303.4 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.1.1-7.fc41.i686 >>> Stop post-install scriptlet: libgcc-0:14.1.1-7.fc41.i686 [ 4/156] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 5/156] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/156] Installing fedora-release-ide 100% | 0.0 B/s | 952.0 B | 00m00s [ 7/156] Installing fedora-gpg-keys-0: 100% | 18.4 MiB/s | 169.7 KiB | 00m00s [ 8/156] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 9/156] Installing fedora-repos-0:41- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/156] Installing fedora-release-com 100% | 11.5 MiB/s | 23.5 KiB | 00m00s [ 11/156] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/156] Installing setup-0:2.15.0-4.f 100% | 47.3 MiB/s | 726.1 KiB | 00m00s >>> Running post-install scriptlet: setup-0:2.15.0-4.fc41.noarch >>> Stop post-install scriptlet: setup-0:2.15.0-4.fc41.noarch [ 13/156] Installing filesystem-0:3.18- 100% | 1.5 MiB/s | 212.0 KiB | 00m00s [ 14/156] Installing basesystem-0:11-20 100% | 0.0 B/s | 124.0 B | 00m00s [ 15/156] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB | 00m00s [ 16/156] Installing coreutils-common-0 100% | 238.1 MiB/s | 11.2 MiB | 00m00s [ 17/156] Installing ncurses-base-0:6.4 100% | 38.2 MiB/s | 351.6 KiB | 00m00s [ 18/156] Installing pkgconf-m4-0:2.1.1 100% | 0.0 B/s | 14.3 KiB | 00m00s [ 19/156] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [ 20/156] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [ 21/156] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [ 22/156] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [ 23/156] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [ 24/156] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [ 25/156] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [ 26/156] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [ 27/156] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [ 28/156] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 29/156] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [ 30/156] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [ 31/156] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 32/156] Installing ncurses-libs-0:6.4 100% | 157.8 MiB/s | 969.5 KiB | 00m00s >>> Running pre-install scriptlet: glibc-0:2.39.9000-30.fc41.i686 >>> Stop pre-install scriptlet: glibc-0:2.39.9000-30.fc41.i686 warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 33/156] Installing glibc-0:2.39.9000- 100% | 134.1 MiB/s | 5.5 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.39.9000-30.fc41.i686 >>> Stop post-install scriptlet: glibc-0:2.39.9000-30.fc41.i686 [ 34/156] Installing bash-0:5.2.26-3.fc 100% | 259.2 MiB/s | 8.3 MiB | 00m00s >>> Running post-install scriptlet: bash-0:5.2.26-3.fc40.i686 >>> Stop post-install scriptlet: bash-0:5.2.26-3.fc40.i686 [ 35/156] Installing glibc-common-0:2.3 100% | 128.2 MiB/s | 1.0 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 36/156] Installing glibc-gconv-extra- 100% | 129.2 MiB/s | 7.4 MiB | 00m00s >>> Running post-install scriptlet: glibc-gconv-extra-0:2.39.9000-30.fc41.i686 >>> Stop post-install scriptlet: glibc-gconv-extra-0:2.39.9000-30.fc41.i686 [ 37/156] Installing zlib-ng-compat-0:2 100% | 73.4 MiB/s | 150.2 KiB | 00m00s [ 38/156] Installing xz-libs-1:5.6.2-1. 100% | 225.5 MiB/s | 230.9 KiB | 00m00s [ 39/156] Installing bzip2-libs-0:1.0.8 100% | 75.2 MiB/s | 77.0 KiB | 00m00s [ 40/156] Installing libuuid-0:2.40.2-1 100% | 44.7 MiB/s | 45.8 KiB | 00m00s [ 41/156] Installing readline-0:8.2-8.f 100% | 149.6 MiB/s | 459.6 KiB | 00m00s [ 42/156] Installing popt-0:1.19-6.fc40 100% | 34.8 MiB/s | 142.5 KiB | 00m00s [ 43/156] Installing libblkid-0:2.40.2- 100% | 139.9 MiB/s | 286.5 KiB | 00m00s [ 44/156] Installing libattr-0:2.5.2-3. 100% | 0.0 B/s | 24.7 KiB | 00m00s [ 45/156] Installing libacl-0:2.3.2-1.f 100% | 39.1 MiB/s | 40.1 KiB | 00m00s [ 46/156] Installing libxcrypt-0:4.4.36 100% | 135.2 MiB/s | 276.9 KiB | 00m00s [ 47/156] Installing libzstd-0:1.5.6-1. 100% | 235.8 MiB/s | 724.4 KiB | 00m00s [ 48/156] Installing elfutils-libelf-0: 100% | 235.3 MiB/s | 1.2 MiB | 00m00s [ 49/156] Installing gmp-1:6.3.0-1.fc41 100% | 239.8 MiB/s | 736.7 KiB | 00m00s [ 50/156] Installing libstdc++-0:14.1.1 100% | 255.2 MiB/s | 2.8 MiB | 00m00s [ 51/156] Installing libeconf-0:0.6.2-2 100% | 57.5 MiB/s | 58.9 KiB | 00m00s [ 52/156] Installing gdbm-libs-1:1.23-6 100% | 12.3 MiB/s | 126.0 KiB | 00m00s >>> Running pre-install scriptlet: crypto-policies-0:20240717-1.git154fd4e.fc41. >>> Stop pre-install scriptlet: crypto-policies-0:20240717-1.git154fd4e.fc41.noa [ 53/156] Installing crypto-policies-0: 100% | 15.2 MiB/s | 156.1 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20240717-1.git154fd4e.fc41 >>> Stop post-install scriptlet: crypto-policies-0:20240717-1.git154fd4e.fc41.no [ 54/156] Installing mpfr-0:4.2.1-4.fc4 100% | 235.4 MiB/s | 964.2 KiB | 00m00s [ 55/156] Installing gawk-0:5.3.0-3.fc4 100% | 172.7 MiB/s | 1.7 MiB | 00m00s [ 56/156] Installing dwz-0:0.15-6.fc40. 100% | 159.3 MiB/s | 326.3 KiB | 00m00s [ 57/156] Installing unzip-0:6.0-63.fc4 100% | 128.8 MiB/s | 395.8 KiB | 00m00s [ 58/156] Installing file-libs-0:5.45-6 100% | 473.6 MiB/s | 9.9 MiB | 00m00s [ 59/156] Installing file-0:5.45-6.fc41 100% | 93.8 MiB/s | 96.0 KiB | 00m00s [ 60/156] Installing libcap-ng-0:0.8.5- 100% | 67.9 MiB/s | 69.5 KiB | 00m00s [ 61/156] Installing audit-libs-0:4.0.1 100% | 166.0 MiB/s | 340.0 KiB | 00m00s [ 62/156] Installing pam-libs-0:1.6.1-4 100% | 120.2 MiB/s | 123.1 KiB | 00m00s [ 63/156] Installing libcap-0:2.70-2.fc 100% | 68.4 MiB/s | 210.0 KiB | 00m00s [ 64/156] Installing systemd-libs-0:256 100% | 251.2 MiB/s | 2.0 MiB | 00m00s [ 65/156] Installing libsmartcols-0:2.4 100% | 176.5 MiB/s | 180.7 KiB | 00m00s [ 66/156] Installing libcom_err-0:1.47. 100% | 58.1 MiB/s | 59.5 KiB | 00m00s [ 67/156] Installing libsepol-0:3.7-1.f 100% | 284.6 MiB/s | 874.3 KiB | 00m00s [ 68/156] Installing pcre2-0:10.44-1.fc 100% | 215.3 MiB/s | 661.4 KiB | 00m00s [ 69/156] Installing libselinux-0:3.7-3 100% | 189.0 MiB/s | 193.5 KiB | 00m00s [ 70/156] Installing sed-0:4.9-1.fc40.i 100% | 121.2 MiB/s | 868.8 KiB | 00m00s [ 71/156] Installing grep-0:3.11-8.fc41 100% | 125.3 MiB/s | 1.0 MiB | 00m00s [ 72/156] Installing findutils-1:4.10.0 100% | 188.0 MiB/s | 1.9 MiB | 00m00s [ 73/156] Installing xz-1:5.6.2-1.fc41. 100% | 134.1 MiB/s | 1.2 MiB | 00m00s [ 74/156] Installing libmount-0:2.40.2- 100% | 189.5 MiB/s | 388.1 KiB | 00m00s [ 75/156] Installing lz4-libs-0:1.9.4-6 100% | 130.6 MiB/s | 133.7 KiB | 00m00s [ 76/156] Installing alternatives-0:1.2 100% | 61.7 MiB/s | 63.1 KiB | 00m00s [ 77/156] Installing lua-libs-0:5.4.6-5 100% | 151.3 MiB/s | 309.8 KiB | 00m00s [ 78/156] Installing libtasn1-0:4.19.0- 100% | 176.5 MiB/s | 180.7 KiB | 00m00s [ 79/156] Installing libunistring-0:1.1 100% | 289.0 MiB/s | 1.7 MiB | 00m00s [ 80/156] Installing elfutils-default-y 100% | 255.4 KiB/s | 2.0 KiB | 00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-7.fc41.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-7.fc41.noar [ 81/156] Installing elfutils-libs-0:0. 100% | 170.5 MiB/s | 698.4 KiB | 00m00s [ 82/156] Installing libidn2-0:2.3.7-1. 100% | 80.6 MiB/s | 330.3 KiB | 00m00s [ 83/156] Installing libpsl-0:0.21.5-3. 100% | 71.2 MiB/s | 72.9 KiB | 00m00s [ 84/156] Installing zstd-0:1.5.6-1.fc4 100% | 258.6 MiB/s | 1.6 MiB | 00m00s [ 85/156] Installing util-linux-core-0: 100% | 125.8 MiB/s | 1.4 MiB | 00m00s [ 86/156] Installing tar-2:1.35-3.fc40. 100% | 230.4 MiB/s | 3.0 MiB | 00m00s [ 87/156] Installing libsemanage-0:3.7- 100% | 99.6 MiB/s | 305.9 KiB | 00m00s [ 88/156] Installing shadow-utils-2:4.1 100% | 85.8 MiB/s | 4.0 MiB | 00m00s >>> Running pre-install scriptlet: libutempter-0:1.2.1-14.fc41.i686 >>> Stop pre-install scriptlet: libutempter-0:1.2.1-14.fc41.i686 [ 89/156] Installing libutempter-0:1.2. 100% | 28.4 MiB/s | 58.1 KiB | 00m00s [ 90/156] Installing zip-0:3.0-40.fc40. 100% | 173.6 MiB/s | 710.9 KiB | 00m00s [ 91/156] Installing gdbm-1:1.23-6.fc40 100% | 111.0 MiB/s | 454.7 KiB | 00m00s [ 92/156] Installing cyrus-sasl-lib-0:2 100% | 248.0 MiB/s | 2.5 MiB | 00m00s [ 93/156] Installing libfdisk-0:2.40.2- 100% | 200.9 MiB/s | 411.5 KiB | 00m00s [ 94/156] Installing bzip2-0:1.0.8-18.f 100% | 46.1 MiB/s | 94.4 KiB | 00m00s [ 95/156] Installing libxml2-0:2.12.8-1 100% | 258.7 MiB/s | 1.8 MiB | 00m00s [ 96/156] Installing add-determinism-0: 100% | 258.0 MiB/s | 2.1 MiB | 00m00s [ 97/156] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 98/156] Installing sqlite-libs-0:3.46 100% | 250.0 MiB/s | 1.5 MiB | 00m00s [ 99/156] Installing ed-0:1.20.2-1.fc41 100% | 140.6 MiB/s | 144.0 KiB | 00m00s [100/156] Installing patch-0:2.7.6-24.f 100% | 146.2 MiB/s | 299.5 KiB | 00m00s [101/156] Installing cpio-0:2.15-1.fc40 100% | 157.9 MiB/s | 1.1 MiB | 00m00s [102/156] Installing diffutils-0:3.10-5 100% | 176.8 MiB/s | 1.6 MiB | 00m00s [103/156] Installing libpkgconf-0:2.1.1 100% | 80.0 MiB/s | 81.9 KiB | 00m00s [104/156] Installing pkgconf-0:2.1.1-1. 100% | 40.9 MiB/s | 83.8 KiB | 00m00s [105/156] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s [106/156] Installing keyutils-libs-0:1. 100% | 57.6 MiB/s | 59.0 KiB | 00m00s [107/156] Installing libverto-0:0.3.2-8 100% | 29.8 MiB/s | 30.5 KiB | 00m00s [108/156] Installing jansson-0:2.13.1-9 100% | 86.9 MiB/s | 88.9 KiB | 00m00s [109/156] Installing libgomp-0:14.1.1-7 100% | 257.8 MiB/s | 527.9 KiB | 00m00s [110/156] Installing libffi-0:3.4.6-1.f 100% | 77.1 MiB/s | 78.9 KiB | 00m00s [111/156] Installing p11-kit-0:0.25.5-2 100% | 155.5 MiB/s | 2.3 MiB | 00m00s [112/156] Installing p11-kit-trust-0:0. 100% | 27.3 MiB/s | 363.3 KiB | 00m00s >>> Running post-install scriptlet: p11-kit-trust-0:0.25.5-2.fc41.i686 >>> Stop post-install scriptlet: p11-kit-trust-0:0.25.5-2.fc41.i686 [113/156] Installing openssl-libs-1:3.2 100% | 216.1 MiB/s | 6.3 MiB | 00m00s [114/156] Installing coreutils-0:9.5-5. 100% | 144.2 MiB/s | 5.5 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-2.fc41.n >>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-2.fc41.noar [115/156] Installing ca-certificates-0: 100% | 1.9 MiB/s | 2.4 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-2.fc41. >>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-2.fc41.noa [116/156] Installing krb5-libs-0:1.21.3 100% | 194.7 MiB/s | 2.3 MiB | 00m00s [117/156] Installing libarchive-0:3.7.4 100% | 241.3 MiB/s | 988.4 KiB | 00m00s [118/156] Installing libtirpc-0:1.3.4-1 100% | 103.3 MiB/s | 211.7 KiB | 00m00s [119/156] Installing gzip-0:1.13-1.fc40 100% | 95.1 MiB/s | 389.6 KiB | 00m00s [120/156] Installing authselect-libs-0: 100% | 90.7 MiB/s | 836.3 KiB | 00m00s [121/156] Installing cracklib-0:2.9.11- 100% | 34.5 MiB/s | 247.1 KiB | 00m00s [122/156] Installing libpwquality-0:1.4 100% | 51.6 MiB/s | 423.0 KiB | 00m00s [123/156] Installing libnsl2-0:2.0.1-1. 100% | 56.9 MiB/s | 58.2 KiB | 00m00s [124/156] Installing pam-0:1.6.1-4.fc41 100% | 75.2 MiB/s | 1.7 MiB | 00m00s [125/156] Installing libssh-0:0.10.6-6. 100% | 178.8 MiB/s | 549.4 KiB | 00m00s [126/156] Installing rpm-sequoia-0:1.7. 100% | 291.7 MiB/s | 2.6 MiB | 00m00s [127/156] Installing rpm-libs-0:4.19.92 100% | 246.9 MiB/s | 758.4 KiB | 00m00s [128/156] Installing rpm-build-libs-0:4 100% | 205.3 MiB/s | 210.3 KiB | 00m00s [129/156] Installing libevent-0:2.1.12- 100% | 232.4 MiB/s | 951.9 KiB | 00m00s [130/156] Installing xxhash-libs-0:0.8. 100% | 114.5 MiB/s | 117.2 KiB | 00m00s [131/156] Installing libbrotli-0:1.1.0- 100% | 209.4 MiB/s | 857.8 KiB | 00m00s [132/156] Installing libnghttp2-0:1.62. 100% | 170.5 MiB/s | 174.6 KiB | 00m00s [133/156] Installing libtool-ltdl-0:2.4 100% | 68.9 MiB/s | 70.5 KiB | 00m00s [134/156] Installing openldap-0:2.6.8-3 100% | 164.4 MiB/s | 673.2 KiB | 00m00s [135/156] Installing libcurl-0:8.8.0-2. 100% | 202.9 MiB/s | 830.9 KiB | 00m00s [136/156] Installing elfutils-debuginfo 100% | 27.9 MiB/s | 57.2 KiB | 00m00s [137/156] Installing binutils-0:2.42.50 100% | 271.0 MiB/s | 24.9 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.42.50-14.fc41.i686 >>> Stop post-install scriptlet: binutils-0:2.42.50-14.fc41.i686 [138/156] Installing elfutils-0:0.191-7 100% | 230.9 MiB/s | 2.5 MiB | 00m00s [139/156] Installing gdb-minimal-0:14.2 100% | 311.5 MiB/s | 13.4 MiB | 00m00s [140/156] Installing debugedit-0:5.0-16 100% | 95.5 MiB/s | 195.6 KiB | 00m00s [141/156] Installing curl-0:8.8.0-2.fc4 100% | 38.1 MiB/s | 741.5 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.92-2.fc41.i686 >>> Stop pre-install scriptlet: rpm-0:4.19.92-2.fc41.i686 [142/156] Installing rpm-0:4.19.92-2.fc 100% | 95.2 MiB/s | 2.5 MiB | 00m00s [143/156] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [144/156] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [145/156] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [146/156] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [147/156] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.3 KiB | 00m00s [148/156] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [149/156] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [150/156] Installing redhat-rpm-config- 100% | 61.9 MiB/s | 190.1 KiB | 00m00s [151/156] Installing rpm-build-0:4.19.9 100% | 58.2 MiB/s | 178.8 KiB | 00m00s [152/156] Installing pyproject-srpm-mac 100% | 2.0 MiB/s | 2.1 KiB | 00m00s [153/156] Installing util-linux-0:2.40. 100% | 90.5 MiB/s | 3.5 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-1.fc41.i686 >>> Stop post-install scriptlet: util-linux-0:2.40.2-1.fc41.i686 [154/156] Installing authselect-0:1.5.0 100% | 40.3 MiB/s | 165.0 KiB | 00m00s [155/156] Installing which-0:2.21-41.fc 100% | 79.2 MiB/s | 81.1 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [156/156] Installing info-0:7.1-2.fc40. 100% | 212.6 KiB/s | 360.8 KiB | 00m02s >>> Running post-transaction scriptlet: filesystem-0:3.18-9.fc41.i686 >>> Stop post-transaction scriptlet: filesystem-0:3.18-9.fc41.i686 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-2.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-2.fc41 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-6.fc41.i686 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-6.fc41.i686 >>> Running post-transaction scriptlet: rpm-0:4.19.92-2.fc41.i686 >>> Stop post-transaction scriptlet: rpm-0:4.19.92-2.fc41.i686 >>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-30.fc41.i686 >>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-30.fc41.i686 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.i686 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.i686 Complete! Warning: skipped PGP checks for 154 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.3-1.fc41.i686 alternatives-1.28-1.fc41.i686 ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-3.fc41.i686 authselect-1.5.0-6.fc41.i686 authselect-libs-1.5.0-6.fc41.i686 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.i686 binutils-2.42.50-14.fc41.i686 build-reproducibility-srpm-macros-0.3.3-1.fc41.noarch bzip2-1.0.8-18.fc40.i686 bzip2-libs-1.0.8-18.fc40.i686 ca-certificates-2024.2.68_v8.0.302-2.fc41.noarch coreutils-9.5-5.fc41.i686 coreutils-common-9.5-5.fc41.i686 cpio-2.15-1.fc40.i686 cracklib-2.9.11-5.fc40.i686 crypto-policies-20240717-1.git154fd4e.fc41.noarch curl-8.8.0-2.fc41.i686 cyrus-sasl-lib-2.1.28-24.fc41.i686 debugedit-5.0-16.fc41.i686 diffutils-3.10-5.fc40.i686 dwz-0.15-6.fc40.i686 ed-1.20.2-1.fc41.i686 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-7.fc41.i686 elfutils-debuginfod-client-0.191-7.fc41.i686 elfutils-default-yama-scope-0.191-7.fc41.noarch elfutils-libelf-0.191-7.fc41.i686 elfutils-libs-0.191-7.fc41.i686 fedora-gpg-keys-41-0.2.noarch fedora-release-41-0.16.noarch fedora-release-common-41-0.16.noarch fedora-release-identity-basic-41-0.16.noarch fedora-repos-41-0.2.noarch fedora-repos-rawhide-41-0.2.noarch file-5.45-6.fc41.i686 file-libs-5.45-6.fc41.i686 filesystem-3.18-9.fc41.i686 findutils-4.10.0-3.fc41.i686 fonts-srpm-macros-2.0.5-16.fc41.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.i686 gdb-minimal-14.2-15.fc41.i686 gdbm-1.23-6.fc40.i686 gdbm-libs-1.23-6.fc40.i686 ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-30.fc41.i686 glibc-common-2.39.9000-30.fc41.i686 glibc-gconv-extra-2.39.9000-30.fc41.i686 glibc-minimal-langpack-2.39.9000-30.fc41.i686 gmp-6.3.0-1.fc41.i686 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-8.fc41.i686 gzip-1.13-1.fc40.i686 info-7.1-2.fc40.i686 jansson-2.13.1-9.fc40.i686 kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.i686 krb5-libs-1.21.3-1.fc41.i686 libacl-2.3.2-1.fc40.i686 libarchive-3.7.4-2.fc41.i686 libattr-2.5.2-3.fc40.i686 libblkid-2.40.2-1.fc41.i686 libbrotli-1.1.0-4.fc41.i686 libcap-2.70-2.fc41.i686 libcap-ng-0.8.5-2.fc41.i686 libcom_err-1.47.1-1.fc41.i686 libcurl-8.8.0-2.fc41.i686 libeconf-0.6.2-2.fc41.i686 libevent-2.1.12-13.fc41.i686 libfdisk-2.40.2-1.fc41.i686 libffi-3.4.6-1.fc41.i686 libgcc-14.1.1-7.fc41.i686 libgomp-14.1.1-7.fc41.i686 libidn2-2.3.7-1.fc40.i686 libmount-2.40.2-1.fc41.i686 libnghttp2-1.62.1-1.fc41.i686 libnsl2-2.0.1-1.fc40.i686 libpkgconf-2.1.1-1.fc41.i686 libpsl-0.21.5-3.fc40.i686 libpwquality-1.4.5-10.fc41.i686 libselinux-3.7-3.fc41.i686 libsemanage-3.7-1.fc41.i686 libsepol-3.7-1.fc41.i686 libsmartcols-2.40.2-1.fc41.i686 libssh-0.10.6-6.fc41.i686 libssh-config-0.10.6-6.fc41.noarch libstdc++-14.1.1-7.fc41.i686 libtasn1-4.19.0-6.fc40.i686 libtirpc-1.3.4-1.rc3.fc41.i686 libtool-ltdl-2.4.7-11.fc41.i686 libunistring-1.1-7.fc41.i686 libutempter-1.2.1-14.fc41.i686 libuuid-2.40.2-1.fc41.i686 libverto-0.3.2-8.fc40.i686 libxcrypt-4.4.36-5.fc40.i686 libxml2-2.12.8-1.fc41.i686 libzstd-1.5.6-1.fc41.i686 lua-libs-5.4.6-5.fc40.i686 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.i686 mpfr-4.2.1-4.fc41.i686 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.i686 ocaml-srpm-macros-10-2.fc41.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.8-3.fc41.i686 openssl-libs-3.2.2-4.fc41.i686 p11-kit-0.25.5-2.fc41.i686 p11-kit-trust-0.25.5-2.fc41.i686 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-4.fc41.i686 pam-libs-1.6.1-4.fc41.i686 patch-2.7.6-24.fc40.i686 pcre2-10.44-1.fc41.i686 pcre2-syntax-10.44-1.fc41.noarch perl-srpm-macros-1-55.fc41.noarch pkgconf-2.1.1-1.fc41.i686 pkgconf-m4-2.1.1-1.fc41.noarch pkgconf-pkg-config-2.1.1-1.fc41.i686 popt-1.19-6.fc40.i686 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.13.0-1.fc41.noarch python-srpm-macros-3.13-2.fc41.noarch qt5-srpm-macros-5.15.14-2.fc41.noarch qt6-srpm-macros-6.7.2-2.fc41.noarch readline-8.2-8.fc40.i686 redhat-rpm-config-293-1.fc41.noarch rpm-4.19.92-2.fc41.i686 rpm-build-4.19.92-2.fc41.i686 rpm-build-libs-4.19.92-2.fc41.i686 rpm-libs-4.19.92-2.fc41.i686 rpm-sequoia-1.7.0-1.fc41.i686 rust-srpm-macros-26.3-1.fc41.noarch sed-4.9-1.fc40.i686 setup-2.15.0-4.fc41.noarch shadow-utils-4.15.1-5.fc41.i686 sqlite-libs-3.46.0-2.fc41.i686 systemd-libs-256.2-1.fc41.i686 tar-1.35-3.fc40.i686 unzip-6.0-63.fc40.i686 util-linux-2.40.2-1.fc41.i686 util-linux-core-2.40.2-1.fc41.i686 which-2.21-41.fc40.i686 xxhash-libs-0.8.2-2.fc40.i686 xz-5.6.2-1.fc41.i686 xz-libs-5.6.2-1.fc41.i686 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.i686 zlib-ng-compat-2.1.7-1.fc41.i686 zstd-1.5.6-1.fc41.i686 Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 warning: line 25: Possible unexpanded macro in: Requires: libint(api)(x86-32) = %{_libint_apiversion} setting SOURCE_DATE_EPOCH=1721260800 Wrote: /builddir/build/SRPMS/libghemical-3.0.0-25.fc41.src.rpm RPM build warnings: line 25: Possible unexpanded macro in: Requires: libint(api)(x86-32) = %{_libint_apiversion} Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-i686-1721329343.891941/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1721329343.891941/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-2nvs_s6r/libghemical/libghemical.spec) Config(child) 0 minutes 27 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/libghemical-3.0.0-25.fc41.src.rpm) Config(fedora-rawhide-i686) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1721329343.891941/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1721329343.891941/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1721329343.891941/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-2.fc41.x86_64 rpm-sequoia-1.7.0-1.fc41.x86_64 dnf5-5.2.4.0-1.fc41.x86_64 dnf5-plugins-5.2.4.0-1.fc41.x86_64 Finish: chroot init Start: build phase for libghemical-3.0.0-25.fc41.src.rpm Start: build setup for libghemical-3.0.0-25.fc41.src.rpm Building target platforms: i686 Building for target i686 warning: line 25: Possible unexpanded macro in: Requires: libint(api)(x86-32) = %{_libint_apiversion} setting SOURCE_DATE_EPOCH=1721260800 Wrote: /builddir/build/SRPMS/libghemical-3.0.0-25.fc41.src.rpm RPM build warnings: line 25: Possible unexpanded macro in: Requires: libint(api)(x86-32) = %{_libint_apiversion} Updating and loading repositories: Additional repo http_kojipkgs_fedorapr 100% | 70.9 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 36.6 KiB/s | 1.5 KiB | 00m00s local 100% | 97.1 KiB/s | 3.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: flex i686 2.6.4-16.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 787.3 KiB flexiblas-devel i686 3.4.4-2.fc41 copr_base 2.3 MiB gcc-c++ i686 14.1.1-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38.9 MiB gcc-gfortran i686 14.1.1-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.7 MiB glib2-devel i686 2.80.3-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 15.6 MiB intltool noarch 0.51.0-26.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 169.1 KiB libint-devel i686 1.2.1-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 532.7 KiB libtool i686 2.4.7-11.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB make i686 1:4.4.1-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB mesa-libGLU-devel i686 9.0.3-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17.0 KiB mopac7-devel i686 1.15-46.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 28.0 KiB mpqc-devel i686 2.3.1-58.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB Installing dependencies: annobin-docs noarch 12.60-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 96.2 KiB annobin-plugin-gcc i686 12.60-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 975.2 KiB autoconf noarch 2.72-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.8 MiB automake noarch 1.16.5-16.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB cmake-filesystem i686 3.28.3-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B cpp i686 14.1.1-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.6 MiB emacs-filesystem noarch 1:30.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B expat i686 2.6.2-1.fc41 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 114.4 KiB perl-threads-shared i686 1.69-510.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 87.0 KiB perl-vars noarch 1.05-509.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.9 KiB python-pip-wheel noarch 24.1.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB python3 i686 3.13.0~b3-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30.9 KiB python3-libs i686 3.13.0~b3-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 MiB python3-packaging noarch 24.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 422.7 KiB sysprof-capture-devel i686 47~alpha-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 237.3 KiB tzdata noarch 2024a-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB xorg-x11-proto-devel noarch 2024.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB zlib-ng-compat-devel i686 2.1.7-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.7 KiB Transaction Summary: Installing: 199 packages Total size of inbound packages is 186 MiB. 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| 205.2 KiB | 00m00s [165/201] Installing libb2-0:0.98.1-11. 100% | 13.3 MiB/s | 54.5 KiB | 00m00s [166/201] Installing python3-libs-0:3.1 100% | 218.8 MiB/s | 40.5 MiB | 00m00s [167/201] Installing python3-0:3.13.0~b 100% | 31.9 MiB/s | 32.7 KiB | 00m00s [168/201] Installing python3-packaging- 100% | 105.8 MiB/s | 433.5 KiB | 00m00s [169/201] Installing gettext-envsubst-0 100% | 73.7 MiB/s | 75.5 KiB | 00m00s [170/201] Installing gettext-runtime-0: 100% | 67.1 MiB/s | 480.9 KiB | 00m00s [171/201] Installing gettext-0:0.22.5-4 100% | 234.4 MiB/s | 5.2 MiB | 00m00s [172/201] Installing gettext-devel-0:0. 100% | 76.0 MiB/s | 1.0 MiB | 00m00s [173/201] Installing nettle-0:3.10-2.fc 100% | 193.9 MiB/s | 794.2 KiB | 00m00s [174/201] Installing gnutls-0:3.8.6-2.f 100% | 261.0 MiB/s | 3.4 MiB | 00m00s [175/201] Installing glib2-0:2.80.3-1.f 100% | 284.0 MiB/s | 15.1 MiB | 00m00s [176/201] Installing pcre2-utf32-0:10.4 100% | 274.5 MiB/s | 562.1 KiB | 00m00s [177/201] Installing 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| 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch [199/201] Installing glib2-devel-0:2.80 100% | 306.5 MiB/s | 15.6 MiB | 00m00s [200/201] Installing flexiblas-devel-0: 100% | 390.0 MiB/s | 2.3 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [201/201] Installing flex-0:2.6.4-16.fc 100% | 2.2 MiB/s | 793.3 KiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-30.fc41.i686 >>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-30.fc41.i686 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.i686 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.i686 >>> Running trigger-install scriptlet: glib2-0:2.80.3-1.fc41.i686 >>> Stop trigger-install scriptlet: glib2-0:2.80.3-1.fc41.i686 >>> Running trigger-install scriptlet: glib2-0:2.80.3-1.fc41.i686 >>> Stop trigger-install scriptlet: glib2-0:2.80.3-1.fc41.i686 Complete! Warning: skipped PGP checks for 199 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: build setup for libghemical-3.0.0-25.fc41.src.rpm Start: rpmbuild libghemical-3.0.0-25.fc41.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1721260800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.C5a3EB + umask 022 + cd /builddir/build/BUILD/libghemical-3.0.0-build + test -d /builddir/build/BUILD/libghemical-3.0.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/libghemical-3.0.0-build + /usr/bin/rm -rf /builddir/build/BUILD/libghemical-3.0.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/libghemical-3.0.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/libghemical-3.0.0-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.q4bErV + umask 022 + cd /builddir/build/BUILD/libghemical-3.0.0-build + cd /builddir/build/BUILD/libghemical-3.0.0-build + rm -rf libghemical-3.0.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/libghemical-3.0.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd libghemical-3.0.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.F3el6o + umask 022 + cd /builddir/build/BUILD/libghemical-3.0.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libghemical-3.0.0 + sed -i s/blas/flexiblas/g configure.ac + sed -i s/lapack/flexiblas/g configure.ac + autoreconf -ivf autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: not using Gettext autoreconf: running: aclocal --force autoreconf: configure.ac: tracing autoreconf: running: libtoolize --copy --force libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. autoreconf: running: intltoolize --copy --force autoreconf: configure.ac: not using Gtkdoc autoreconf: running: aclocal --force autoreconf: running: /usr/bin/autoconf --force configure.ac:26: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:26: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:10863: AM_CONFIG_HEADER is expanded from... configure.ac:26: the top level configure.ac:32: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:32: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:10863: AM_CONFIG_HEADER is expanded from... configure.ac:32: the top level configure.ac:91: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:91: You should run autoupdate. aclocal.m4:799: AC_PROG_LIBTOOL is expanded from... configure.ac:91: the top level configure.ac:105: warning: The macro 'GLIB_GNU_GETTEXT' is obsolete. configure.ac:105: You should run autoupdate. aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from... aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from... configure.ac:105: the top level configure.ac:105: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:105: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... aclocal.m4:73: GLIB_LC_MESSAGES is expanded from... aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from... aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from... configure.ac:105: the top level configure.ac:105: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:105: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/headers.m4:89: _AC_CHECK_HEADER_COMPILE is expanded from... ./lib/autoconf/headers.m4:56: AC_CHECK_HEADER is expanded from... aclocal.m4:172: GLIB_WITH_NLS is expanded from... aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from... aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from... configure.ac:105: the top level configure.ac:105: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:105: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/headers.m4:89: _AC_CHECK_HEADER_COMPILE is expanded from... ./lib/autoconf/headers.m4:56: AC_CHECK_HEADER is expanded from... aclocal.m4:172: GLIB_WITH_NLS is expanded from... aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from... aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from... configure.ac:105: the top level configure.ac:105: warning: The macro 'AC_OUTPUT_COMMANDS' is obsolete. configure.ac:105: You should run autoupdate. ./lib/autoconf/status.m4:1025: AC_OUTPUT_COMMANDS is expanded from... aclocal.m4:172: GLIB_WITH_NLS is expanded from... aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from... aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from... configure.ac:105: the top level configure.ac:126: warning: The macro 'AC_TRY_RUN' is obsolete. configure.ac:126: You should run autoupdate. ./lib/autoconf/general.m4:2995: AC_TRY_RUN is expanded from... acinclude.m4:10: AM_PATH_SC is expanded from... configure.ac:126: the top level configure.ac:126: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:126: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... acinclude.m4:10: AM_PATH_SC is expanded from... configure.ac:126: the top level configure.ac:159: warning: The macro 'AC_PROG_CC_STDC' is obsolete. configure.ac:159: You should run autoupdate. ./lib/autoconf/c.m4:1669: AC_PROG_CC_STDC is expanded from... configure.ac:159: the top level configure.ac:171: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.ac:171: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.ac:171: the top level autoreconf: running: /usr/bin/autoheader --force autoreconf: running: automake --add-missing --copy --force-missing configure.ac:86: installing './compile' configure.ac:42: installing './missing' /usr/share/automake-1.16/am/ltlibrary.am: warning: 'libghemical.la': linking libtool libraries using a non-POSIX /usr/share/automake-1.16/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac' src/Makefile.am:1: while processing Libtool library 'libghemical.la' src/Makefile.am: installing './depcomp' autoreconf: './install-sh' is updated autoreconf: './config.sub' is updated autoreconf: './config.guess' is updated autoreconf: Leaving directory '.' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2024-07-18 19:03:09.113049055 +0000 +++ ./configure 2024-07-18 19:03:10.438041108 +0000 @@ -8189,7 +8189,7 @@ # Transform an extracted symbol line into a proper C declaration. # Some systems (esp. on ia64) link data and code symbols differently, # so use this general approach. -lt_cv_sys_global_symbol_to_cdecl="$SED -n"\ +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" $lt_cdecl_hook\ " -e 's/^T .* \(.*\)$/extern int \1();/p'"\ " -e 's/^$symcode$symcode* .* \(.*\)$/extern char \1;/p'" @@ -20870,7 +20870,7 @@ compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`' GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`' -lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`' +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" lt_cv_sys_global_symbol_to_import='`$ECHO "$lt_cv_sys_global_symbol_to_import" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`' + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config.sub ++ basename ./config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub '/usr/lib/rpm/redhat/config.sub' -> './config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config.guess ++ basename ./config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess '/usr/lib/rpm/redhat/config.guess' -> './config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh ++ grep -q runstatedir=DIR ./configure ++ echo --runstatedir=/run + ./configure --build=i686-redhat-linux --host=i686-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-mopac7 --enable-mpqc --disable-static --disable-sctest checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... i686-redhat-linux-gnu checking host system type... i686-redhat-linux-gnu checking for i686-redhat-linux-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C preprocessor... gcc -E checking how to run the C++ preprocessor... g++ -E checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-redhat-linux-gnu file names to i686-redhat-linux-gnu format... func_convert_file_noop checking how to convert i686-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for i686-redhat-linux-file... no checking for file... file checking for i686-redhat-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for i686-redhat-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for i686-redhat-linux-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for i686-redhat-linux-strip... no checking for strip... strip checking for i686-redhat-linux-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ./configure: line 8195: -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p': No such file or directory ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for i686-redhat-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ar... /usr/bin/ar checking for sh... /bin/sh checking whether make sets $(MAKE)... (cached) yes checking for i686-redhat-linux-pkg-config... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking whether NLS is requested... yes checking for intltool >= 0.40.0... 0.51.0 found checking for intltool-update... /usr/bin/intltool-update checking for intltool-merge... /usr/bin/intltool-merge checking for intltool-extract... /usr/bin/intltool-extract checking for xgettext... /usr/bin/xgettext checking for msgmerge... /usr/bin/msgmerge checking for msgfmt... /usr/bin/msgfmt checking for gmsgfmt... /usr/bin/msgfmt checking for perl... /usr/bin/perl checking for perl >= 5.8.1... 5.40.0 checking for XML::Parser... ok checking for locale.h... yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for libintl.h... yes checking for ngettext in libc... yes checking for dgettext in libc... yes checking for bind_textdomain_codeset... yes checking for msgfmt... (cached) /usr/bin/msgfmt checking for dcgettext... yes checking if msgfmt accepts -c... yes checking for gmsgfmt... (cached) /usr/bin/msgfmt checking for xgettext... (cached) /usr/bin/xgettext checking whether build environment is sane... yes checking for acos in -lm... yes checking for main in -lflexiblas... yes checking for main in -lflexiblas... (cached) yes checking for sc-config... /usr/bin/sc-config checking SC - version... yes checking for libmopac7 >= 1.13... yes checking for GL/gl.h... yes checking for inline... inline checking for an ANSI C-conforming const... yes checking for egrep... (cached) /usr/bin/grep -E configure: build options: ^^^^^^^^^^^^^^ enable MPQC : yes enable MOPAC7 : yes checking that generated files are newer than configure... done checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating libghemical.pc config.status: creating Makefile config.status: creating bin/Makefile config.status: creating bin/amber/Makefile config.status: creating bin/builder/Makefile config.status: creating bin/param_mm/Makefile config.status: creating bin/param_mm/default/Makefile config.status: creating bin/param_mm/prmfit/Makefile config.status: creating bin/param_mm/tripos52/Makefile config.status: creating bin/param_sf/Makefile config.status: creating bin/param_sf/default/Makefile config.status: creating po/Makefile.in config.status: creating src/Makefile config.status: creating src/libghemicalconfig.h config.status: creating src/libghemical-features.h config.status: executing src/libghemicalconfig2.h commands config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing stamp.h commands config.status: executing po/stamp-it commands + /usr/bin/make -O -j2 V=1 VERBOSE=1 Making all in src /usr/bin/make all-am make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o atom.lo atom.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c atom.cpp -fPIC -DPIC -o .libs/atom.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' atom.cpp:33:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 33 | element element::current_element = element("C"); | ^~~ make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o bond.lo bond.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c bond.cpp -fPIC -DPIC -o .libs/bond.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o constraint.lo constraint.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c constraint.cpp -fPIC -DPIC -o .libs/constraint.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o engine.lo engine.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c engine.cpp -fPIC -DPIC -o .libs/engine.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' In file included from engine.cpp:22: In member function 'engine::GetSetup()', inlined from 'engine_bp::engine_bp(setup*, unsigned int)' at engine.cpp:765:31: engine.h:244:41: warning: 'MEM[(struct engine *)this_5(D) + 48B].stp' is used uninitialized [-Wuninitialized] 244 | setup * GetSetup(void) { return stp; } | ^~~ In member function 'engine::GetSetup()', inlined from 'engine_pbc::engine_pbc(setup*, unsigned int)' at engine.cpp:783:34: engine.h:244:41: warning: 'MEM[(struct engine *)this_38(D) + 36B].stp' is used uninitialized [-Wuninitialized] 244 | setup * GetSetup(void) { return stp; } | ^~~ make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o typerule.lo typerule.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c typerule.cpp -fPIC -DPIC -o .libs/typerule.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' typerule.cpp: In member function 'i32s typerule::ReadSubRule(std::istream*, std::ostream*)': typerule.cpp:172:56: warning: narrowing conversion of 'strlen(((const char*)((char*)(&((typerule*)this)->typerule::buffer))))' from 'size_t' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 172 | i32s tmp1[2] = { strlen(buffer), 0 }; | ~~~~~~^~~~~~~~ typerule.cpp:193:49: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 193 | else tmp2[1] = buffer[tmp1[0]++]; element el = element(tmp2); | ^~~~ typerule.cpp:193:83: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 193 | else tmp2[1] = buffer[tmp1[0]++]; element el = element(tmp2); | ^~~~~~~ typerule.cpp: In member function 'bool typerule::CheckRules(model*, atom*, i32s, i32s)': typerule.cpp:302:45: warning: comparison of integer expressions of different signedness: 'int' and 'i32u' {aka 'unsigned int'} [-Wsign-compare] 302 | if (atom->GetConnRecCount() != (i32u) sr_vector[rule].data) return false; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ typerule.cpp: In member function 'typerule::ReadSubRule(std::basic_istream >*, std::basic_ostream >*)': typerule.cpp:183:50: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 183 | newring[tmp1[1]] = 0; | ~~~~~~~~~~~~~~~~~^~~ typerule.cpp:182:84: note: at offset -1 into destination object of size 0 allocated by 'operator new[](unsigned int)' 182 | signed char * newring = new signed char[tmp1[1] + 1]; | ^ make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o utility.lo utility.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c utility.cpp -fPIC -DPIC -o .libs/utility.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' utility.cpp: In function 'void DefineSecondaryStructure(model*)': utility.cpp:308:42: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 308 | i32s tmp1[2] = { n1, n2 }; | ^~ utility.cpp:309:42: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 309 | i32s tmp2[2] = { n1, n2 + 4 }; | ^~ utility.cpp:349:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 349 | i32s t1a[2] = { n1, n2 - 1 }; i32s t1b[2] = { n1, n3 }; | ^~ utility.cpp:349:79: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 349 | i32s t1a[2] = { n1, n2 - 1 }; i32s t1b[2] = { n1, n3 }; | ^~ utility.cpp:352:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 352 | i32s t2a[2] = { n1, n3 }; i32s t2b[2] = { n1, n2 + 1 }; | ^~ utility.cpp:352:75: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 352 | i32s t2a[2] = { n1, n3 }; i32s t2b[2] = { n1, n2 + 1 }; | ^~ utility.cpp:355:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 355 | i32s t3a[2] = { n1, n3 - 1 }; i32s t3b[2] = { n1, n2 }; | ^~ utility.cpp:355:79: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 355 | i32s t3a[2] = { n1, n3 - 1 }; i32s t3b[2] = { n1, n2 }; | ^~ utility.cpp:358:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 358 | i32s t4a[2] = { n1, n2 }; i32s t4b[2] = { n1, n3 + 1 }; | ^~ utility.cpp:358:75: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 358 | i32s t4a[2] = { n1, n2 }; i32s t4b[2] = { n1, n3 + 1 }; | ^~ utility.cpp:361:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 361 | i32s t5a[2] = { n1, n2 }; i32s t5b[2] = { n1, n3 }; | ^~ utility.cpp:361:75: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 361 | i32s t5a[2] = { n1, n2 }; i32s t5b[2] = { n1, n3 }; | ^~ utility.cpp:364:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 364 | i32s t6a[2] = { n1, n3 }; i32s t6b[2] = { n1, n2 }; | ^~ utility.cpp:364:75: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 364 | i32s t6a[2] = { n1, n3 }; i32s t6b[2] = { n1, n2 }; | ^~ utility.cpp:367:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 367 | i32s t7a[2] = { n1, n2 - 1 }; i32s t7b[2] = { n1, n3 + 1 }; | ^~ utility.cpp:367:79: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 367 | i32s t7a[2] = { n1, n2 - 1 }; i32s t7b[2] = { n1, n3 + 1 }; | ^~ utility.cpp:370:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 370 | i32s t8a[2] = { n1, n3 - 1 }; i32s t8b[2] = { n1, n2 + 1 }; | ^~ utility.cpp:370:79: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 370 | i32s t8a[2] = { n1, n3 - 1 }; i32s t8b[2] = { n1, n2 + 1 }; | ^~ make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o chn_info.lo chn_info.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c chn_info.cpp -fPIC -DPIC -o .libs/chn_info.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o model.lo model.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c model.cpp -fPIC -DPIC -o .libs/model.o In file included from local_i18n.h:38, from model.cpp:46: libghemicalconfig.h:99:9: warning: "PACKAGE_NAME" redefined 99 | #define PACKAGE_NAME "libghemical" | ^~~~~~~~~~~~ In file included from /usr/include/mpqc/util/misc/exenv.h:37, from /usr/include/mpqc/util/class/class.h:46, from /usr/include/mpqc/util/keyval/keyval.h:42, from eng1_qm_mpqc.h:37, from eng2_qm_mm.h:38, from model.cpp:35: /usr/include/mpqc/scconfig.h:278:9: note: this is the location of the previous definition 278 | #define PACKAGE_NAME "" | ^~~~~~~~~~~~ libghemicalconfig.h:102:9: warning: "PACKAGE_STRING" redefined 102 | #define PACKAGE_STRING "libghemical 3.0.0" | ^~~~~~~~~~~~~~ /usr/include/mpqc/scconfig.h:281:9: note: this is the location of the previous definition 281 | #define PACKAGE_STRING "" | ^~~~~~~~~~~~~~ libghemicalconfig.h:105:9: warning: "PACKAGE_TARNAME" redefined 105 | #define PACKAGE_TARNAME "libghemical" | ^~~~~~~~~~~~~~~ /usr/include/mpqc/scconfig.h:284:9: note: this is the location of the previous definition 284 | #define PACKAGE_TARNAME "" | ^~~~~~~~~~~~~~~ libghemicalconfig.h:111:9: warning: "PACKAGE_VERSION" redefined 111 | #define PACKAGE_VERSION "3.0.0" | ^~~~~~~~~~~~~~~ /usr/include/mpqc/scconfig.h:290:9: note: this is the location of the previous definition 290 | #define PACKAGE_VERSION "" | ^~~~~~~~~~~~~~~ In file included from model.cpp:31: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:90:155: warning: no return statement in function returning non-void [-Wreturn-type] 90 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng2_qm_mm.h:91:142: warning: no return statement in function returning non-void [-Wreturn-type] 91 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:127:155: warning: no return statement in function returning non-void [-Wreturn-type] 127 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng2_qm_mm.h:128:142: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ model.cpp: In member function 'bool model::FindRing(atom*, atom*, signed char*, i32s, i32s, i32s)': model.cpp:961:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 961 | if (dist == size) return false; iter_cl it1; | ^~ model.cpp:961:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 961 | if (dist == size) return false; iter_cl it1; | ^~~~~~~ model.cpp: In member function 'void model::AddHydrogens()': model.cpp:1755:45: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses] 1755 | if (some_atoms_selected && (!(* it1).flags & ATOMFLAG_USER_SELECTED)) | ^~~~~~~~~~~~~~ model.cpp: In member function 'void model::SolvateBox(fGL, fGL, fGL, fGL, model*, const char*)': model.cpp:2248:52: warning: variable 'r1' set but not used [-Wunused-but-set-variable] 2248 | const default_at * at; f64 r1 = 0.150; f64 e1 = 0.175; | ^~ model.cpp:2248:68: warning: variable 'e1' set but not used [-Wunused-but-set-variable] 2248 | const default_at * at; f64 r1 = 0.150; f64 e1 = 0.175; | ^~ model.cpp: In member function 'void model::DoGeomOpt(geomopt_param&, bool)': model.cpp:2663:21: warning: unused variable 'eng_bp' [-Wunused-variable] 2663 | engine_bp * eng_bp = dynamic_cast(eng); | ^~~~~~ model.cpp: In member function 'bool model::GetCRDSetVisible(i32u)': model.cpp:319:30: warning: control reaches end of non-void function [-Wreturn-type] 319 | else assertion_failed(__FILE__, __LINE__, "index overflow"); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o mfinder.lo mfinder.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c mfinder.cpp -fPIC -DPIC -o .libs/mfinder.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' mfinder.cpp: In member function 'void mfinder::Identify(model*)': mfinder.cpp:164:41: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 164 | if (!flag) continue; head_atoms.push_back(& (* it1)); break; | ^~ mfinder.cpp:164:62: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 164 | if (!flag) continue; head_atoms.push_back(& (* it1)); break; | ^~~~~~~~~~ mfinder.cpp:173:41: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 173 | if (!flag) continue; tail_atoms.push_back(& (* it1)); break; | ^~ mfinder.cpp:173:62: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 173 | if (!flag) continue; tail_atoms.push_back(& (* it1)); break; | ^~~~~~~~~~ mfinder.cpp:221:37: warning: unused variable 'head_el' [-Wunused-variable] 221 | int head_el = NOT_DEFINED; | ^~~~~~~ mfinder.cpp:222:37: warning: unused variable 'tail_el' [-Wunused-variable] 222 | int tail_el = NOT_DEFINED; | ^~~~~~~ mfinder.cpp: In function 'std::ostream& operator<<(std::ostream&, mf_data_atm&)': mfinder.cpp:703:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 703 | if (p2.tr != NULL) p1 << " " << (* p2.tr); p1 << " "; | ^~ mfinder.cpp:703:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 703 | if (p2.tr != NULL) p1 << " " << (* p2.tr); p1 << " "; | ^~ make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o seqbuild.lo seqbuild.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c seqbuild.cpp -fPIC -DPIC -o .libs/seqbuild.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' seqbuild.cpp: In member function 'void sequencebuilder::Build(model*, sb_chain_descriptor*, bool)': seqbuild.cpp:307:29: warning: comparison of integer expressions of different signedness: 'i32u' {aka 'unsigned int'} and 'const int' [-Wsign-compare] 307 | for (i32u n1 = 0;n1 < num_res;n1++) | ~~~^~~~~~~~~ seqbuild.cpp:310:37: warning: comparison of integer expressions of different signedness: 'i32u' {aka 'unsigned int'} and 'int' [-Wsign-compare] 310 | bool last_res = (n1 == (num_res - 1)); | ~~~^~~~~~~~~~~~~~~~ seqbuild.cpp:317:74: warning: comparison of integer expressions of different signedness: 'int' and 'i32u' {aka 'unsigned int'} [-Wsign-compare] 317 | if (chde->c_crd_BGN < 0 && chde->c_crd_v[n2].pos == n1) chde->c_crd_BGN = n2; seqbuild.cpp:318:98: warning: comparison of integer expressions of different signedness: 'int' and 'i32u' {aka 'unsigned int'} [-Wsign-compare] 318 | if (chde->c_crd_BGN >= 0 && chde->c_crd_END < 0 && chde->c_crd_v[n2].pos > n1) chde->c_crd_END = n2; seqbuild.cpp:324:74: warning: comparison of integer expressions of different signedness: 'int' and 'i32u' {aka 'unsigned int'} [-Wsign-compare] 324 | if (chde->c_tor_BGN < 0 && chde->c_tor_v[n2].pos == n1) chde->c_tor_BGN = n2; seqbuild.cpp:325:98: warning: comparison of integer expressions of different signedness: 'int' and 'i32u' {aka 'unsigned int'} [-Wsign-compare] 325 | if (chde->c_tor_BGN >= 0 && chde->c_tor_END < 0 && chde->c_tor_v[n2].pos > n1) chde->c_tor_END = n2; seqbuild.cpp: In member function 'void sequencebuilder::Identify(model*)': seqbuild.cpp:541:41: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 541 | if (!flag) continue; head_atoms.push_back(& (* it1)); break; | ^~ seqbuild.cpp:541:62: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 541 | if (!flag) continue; head_atoms.push_back(& (* it1)); break; | ^~~~~~~~~~ seqbuild.cpp:550:41: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 550 | if (!flag) continue; tail_atoms.push_back(& (* it1)); break; | ^~ seqbuild.cpp:550:62: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 550 | if (!flag) continue; tail_atoms.push_back(& (* it1)); break; | ^~~~~~~~~~ seqbuild.cpp: In member function 'void sequencebuilder::Convert(sb_chain_descriptor*, sb_data_atm*, fGL*)': seqbuild.cpp:1124:27: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 1124 | if (tor_i >= td_v.size()) | ~~~~~~^~~~~~~~~~~~~~ seqbuild.cpp:1298:35: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 1298 | if (tor_i >= chde->def_tor.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ seqbuild.cpp:1328:40: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 1328 | else if (tor_i < chde->def_tor.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ seqbuild.cpp: In function 'std::istream& operator>>(std::istream&, sb_data_td&)': seqbuild.cpp:1577:14: warning: unused variable 'buffer' [-Wunused-variable] 1577 | char buffer[256]; | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o eng1_qm.lo eng1_qm.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c eng1_qm.cpp -fPIC -DPIC -o .libs/eng1_qm.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' In file included from local_i18n.h:38, from eng1_qm.cpp:27: libghemicalconfig.h:99:9: warning: "PACKAGE_NAME" redefined 99 | #define PACKAGE_NAME "libghemical" | ^~~~~~~~~~~~ In file included from /usr/include/mpqc/util/misc/exenv.h:37, from /usr/include/mpqc/util/class/class.h:46, from /usr/include/mpqc/util/keyval/keyval.h:42, from eng1_qm_mpqc.h:37, from eng1_qm.cpp:24: /usr/include/mpqc/scconfig.h:278:9: note: this is the location of the previous definition 278 | #define PACKAGE_NAME "" | ^~~~~~~~~~~~ libghemicalconfig.h:102:9: warning: "PACKAGE_STRING" redefined 102 | #define PACKAGE_STRING "libghemical 3.0.0" | ^~~~~~~~~~~~~~ /usr/include/mpqc/scconfig.h:281:9: note: this is the location of the previous definition 281 | #define PACKAGE_STRING "" | ^~~~~~~~~~~~~~ libghemicalconfig.h:105:9: warning: "PACKAGE_TARNAME" redefined 105 | #define PACKAGE_TARNAME "libghemical" | ^~~~~~~~~~~~~~~ /usr/include/mpqc/scconfig.h:284:9: note: this is the location of the previous definition 284 | #define PACKAGE_TARNAME "" | ^~~~~~~~~~~~~~~ libghemicalconfig.h:111:9: warning: "PACKAGE_VERSION" redefined 111 | #define PACKAGE_VERSION "3.0.0" | ^~~~~~~~~~~~~~~ /usr/include/mpqc/scconfig.h:290:9: note: this is the location of the previous definition 290 | #define PACKAGE_VERSION "" | ^~~~~~~~~~~~~~~ In file included from eng1_qm.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ In file included from eng1_qm.h:34: In member function 'engine::GetSetup()', inlined from 'eng1_qm::eng1_qm(setup*, unsigned int)' at eng1_qm.cpp:249:46: engine.h:244:41: warning: 'MEM[(struct engine *)this_19(D) + 28B].stp' is used uninitialized [-Wuninitialized] 244 | setup * GetSetup(void) { return stp; } | ^~~ make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o eng1_qm_mopac.lo eng1_qm_mopac.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c eng1_qm_mopac.cpp -fPIC -DPIC -o .libs/eng1_qm_mopac.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' In file included from eng1_qm_mopac.h:30, from eng1_qm_mopac.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm_mopac.cpp: In destructor 'eng1_qm_mopac::~eng1_qm_mopac()': eng1_qm_mopac.cpp:153:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 153 | system(cs_FOR005.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ eng1_qm_mopac.cpp:157:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 157 | system(cs_SHUTDOWN.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ eng1_qm_mopac.cpp: In destructor 'virtual eng1_qm_mopac::~eng1_qm_mopac()': eng1_qm_mopac.cpp:153:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 153 | system(cs_FOR005.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ eng1_qm_mopac.cpp:157:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 157 | system(cs_SHUTDOWN.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ eng1_qm_mopac.cpp: In member function 'void eng1_qm_mopac::FixMeLaterTSS()': eng1_qm_mopac.cpp:178:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 178 | system(cs_FOR005.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ eng1_qm_mopac.cpp:181:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 181 | system(cs_SHUTDOWN.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o eng1_qm_mpqc.lo eng1_qm_mpqc.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c eng1_qm_mpqc.cpp -fPIC -DPIC -o .libs/eng1_qm_mpqc.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' In file included from local_i18n.h:38, from eng1_qm_mpqc.cpp:24: libghemicalconfig.h:99:9: warning: "PACKAGE_NAME" redefined 99 | #define PACKAGE_NAME "libghemical" | ^~~~~~~~~~~~ In file included from /usr/include/mpqc/util/misc/exenv.h:37, from /usr/include/mpqc/util/class/class.h:46, from /usr/include/mpqc/util/keyval/keyval.h:42, from eng1_qm_mpqc.h:37, from eng1_qm_mpqc.cpp:22: /usr/include/mpqc/scconfig.h:278:9: note: this is the location of the previous definition 278 | #define PACKAGE_NAME "" | ^~~~~~~~~~~~ libghemicalconfig.h:102:9: warning: "PACKAGE_STRING" redefined 102 | #define PACKAGE_STRING "libghemical 3.0.0" | ^~~~~~~~~~~~~~ /usr/include/mpqc/scconfig.h:281:9: note: this is the location of the previous definition 281 | #define PACKAGE_STRING "" | ^~~~~~~~~~~~~~ libghemicalconfig.h:105:9: warning: "PACKAGE_TARNAME" redefined 105 | #define PACKAGE_TARNAME "libghemical" | ^~~~~~~~~~~~~~~ /usr/include/mpqc/scconfig.h:284:9: note: this is the location of the previous definition 284 | #define PACKAGE_TARNAME "" | ^~~~~~~~~~~~~~~ libghemicalconfig.h:111:9: warning: "PACKAGE_VERSION" redefined 111 | #define PACKAGE_VERSION "3.0.0" | ^~~~~~~~~~~~~~~ /usr/include/mpqc/scconfig.h:290:9: note: this is the location of the previous definition 290 | #define PACKAGE_VERSION "" | ^~~~~~~~~~~~~~~ In file included from /usr/include/mpqc/util/group/linkage.h:32, from /usr/include/mpqc/math/scmat/linkage.h:34, from /usr/include/mpqc/chemistry/qc/scf/linkage.h:37, from eng1_qm_mpqc.cpp:44: /usr/include/mpqc/scconfig.h:278:9: warning: "PACKAGE_NAME" redefined 278 | #define PACKAGE_NAME "" | ^~~~~~~~~~~~ libghemicalconfig.h:99:9: note: this is the location of the previous definition 99 | #define PACKAGE_NAME "libghemical" | ^~~~~~~~~~~~ /usr/include/mpqc/scconfig.h:281:9: warning: "PACKAGE_STRING" redefined 281 | #define PACKAGE_STRING "" | ^~~~~~~~~~~~~~ libghemicalconfig.h:102:9: note: this is the location of the previous definition 102 | #define PACKAGE_STRING "libghemical 3.0.0" | ^~~~~~~~~~~~~~ /usr/include/mpqc/scconfig.h:284:9: warning: "PACKAGE_TARNAME" redefined 284 | #define PACKAGE_TARNAME "" | ^~~~~~~~~~~~~~~ libghemicalconfig.h:105:9: note: this is the location of the previous definition 105 | #define PACKAGE_TARNAME "libghemical" | ^~~~~~~~~~~~~~~ /usr/include/mpqc/scconfig.h:290:9: warning: "PACKAGE_VERSION" redefined 290 | #define PACKAGE_VERSION "" | ^~~~~~~~~~~~~~~ libghemicalconfig.h:111:9: note: this is the location of the previous definition 111 | #define PACKAGE_VERSION "3.0.0" | ^~~~~~~~~~~~~~~ In file included from eng1_qm_mpqc.h:32: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm_mpqc.cpp: In constructor 'eng1_qm_mpqc::eng1_qm_mpqc(setup*, i32u, i32u)': eng1_qm_mpqc.cpp:50:92: warning: base 'eng1_qm' will be initialized after [-Wreorder] 50 | eng1_qm_mpqc::eng1_qm_mpqc(setup * p1, i32u p2, i32u mode) : eng1_qm(p1, p2), engine(p1, p2) | ^ eng1_qm_mpqc.cpp:50:92: warning: base 'engine' [-Wreorder] eng1_qm_mpqc.cpp:50:1: warning: when initialized here [-Wreorder] 50 | eng1_qm_mpqc::eng1_qm_mpqc(setup * p1, i32u p2, i32u mode) : eng1_qm(p1, p2), engine(p1, p2) | ^~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o eng1_mm.lo eng1_mm.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c eng1_mm.cpp -fPIC -DPIC -o .libs/eng1_mm.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' In file included from eng1_mm.h:39, from eng1_mm.cpp:22: In member function 'engine::GetSetup()', inlined from 'eng1_mm::eng1_mm(setup*, unsigned int)' at eng1_mm.cpp:206:46: engine.h:244:41: warning: 'MEM[(struct engine *)this_53(D) + 120B].stp' is used uninitialized [-Wuninitialized] 244 | setup * GetSetup(void) { return stp; } | ^~~ make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o tab_mm_tripos52.lo tab_mm_tripos52.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c tab_mm_tripos52.cpp -fPIC -DPIC -o .libs/tab_mm_tripos52.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o eng1_mm_tripos52.lo eng1_mm_tripos52.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c eng1_mm_tripos52.cpp -fPIC -DPIC -o .libs/eng1_mm_tripos52.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' In file included from eng1_mm.h:39, from eng1_mm_tripos52.h:39, from eng1_mm_tripos52.cpp:22: In member function 'engine::GetSetup()', inlined from 'eng1_mm_tripos52_nbt_bp::eng1_mm_tripos52_nbt_bp(setup*, unsigned int)' at eng1_mm_tripos52.cpp:833:36: engine.h:244:41: warning: 'MEM[(struct engine *)this_65(D) + 136B].stp' is used uninitialized [-Wuninitialized] 244 | setup * GetSetup(void) { return stp; } | ^~~ make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o eng1_mm_default.lo eng1_mm_default.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c eng1_mm_default.cpp -fPIC -DPIC -o .libs/eng1_mm_default.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' In file included from eng1_mm.h:39, from eng1_mm_default.h:40, from eng1_mm_default.cpp:22: In member function 'engine::GetSetup()', inlined from 'eng1_mm_default_nbt_bp::eng1_mm_default_nbt_bp(setup*, unsigned int)' at eng1_mm_default.cpp:1112:41: engine.h:244:41: warning: 'MEM[(struct engine *)this_86(D) + 136B].stp' is used uninitialized [-Wuninitialized] 244 | setup * GetSetup(void) { return stp; } | ^~~ In member function 'engine::GetSetup()', inlined from 'eng1_mm_default_bt::eng1_mm_default_bt(setup*, unsigned int)' at eng1_mm_default.cpp:42:45: engine.h:244:41: warning: 'MEM[(struct engine *)this_488(D) + 180B].stp' is used uninitialized [-Wuninitialized] 244 | setup * GetSetup(void) { return stp; } | ^~~ make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o tab_mm_default.lo tab_mm_default.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c tab_mm_default.cpp -fPIC -DPIC -o .libs/tab_mm_default.o tab_mm_default.cpp:691:17: warning: multi-line comment [-Wcomment] 691 | // / \ | ^ tab_mm_default.cpp: In member function 'bool default_tables::e_Init(eng1_mm*, mm_default_bt3*, i32s*)': tab_mm_default.cpp:3178:17: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 3178 | if (z < 1) z = 1; z -= 1; | ^~ tab_mm_default.cpp:3178:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 3178 | if (z < 1) z = 1; z -= 1; | ^ make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o eng1_mm_prmfit.lo eng1_mm_prmfit.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c eng1_mm_prmfit.cpp -fPIC -DPIC -o .libs/eng1_mm_prmfit.o eng1_mm_prmfit.cpp: In constructor 'eng1_mm_prmfit::eng1_mm_prmfit(setup*, i32u, prmfit_tables&)': eng1_mm_prmfit.cpp:329:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 329 | if (query.index == NOT_DEFINED) bt3_err++; | ^~ eng1_mm_prmfit.cpp:331:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 331 | newbt3.fc1 = query.fc1; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o tab_mm_prmfit.lo tab_mm_prmfit.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c tab_mm_prmfit.cpp -fPIC -DPIC -o .libs/tab_mm_prmfit.o tab_mm_prmfit.cpp:597:17: warning: multi-line comment [-Wcomment] 597 | // / \ | ^ make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o eng1_sf_ua.lo eng1_sf_ua.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c eng1_sf_ua.cpp -fPIC -DPIC -o .libs/eng1_sf_ua.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o eng1_sf_cg.lo eng1_sf_cg.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c eng1_sf_cg.cpp -fPIC -DPIC -o .libs/eng1_sf_cg.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o eng2_qm_mm.lo eng2_qm_mm.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c eng2_qm_mm.cpp -fPIC -DPIC -o .libs/eng2_qm_mm.o In file included from local_i18n.h:38, from eng2_qm_mm.cpp:24: libghemicalconfig.h:99:9: warning: "PACKAGE_NAME" redefined 99 | #define PACKAGE_NAME "libghemical" | ^~~~~~~~~~~~ In file included from /usr/include/mpqc/util/misc/exenv.h:37, from /usr/include/mpqc/util/class/class.h:46, from /usr/include/mpqc/util/keyval/keyval.h:42, from eng1_qm_mpqc.h:37, from eng2_qm_mm.h:38, from eng2_qm_mm.cpp:22: /usr/include/mpqc/scconfig.h:278:9: note: this is the location of the previous definition 278 | #define PACKAGE_NAME "" | ^~~~~~~~~~~~ libghemicalconfig.h:102:9: warning: "PACKAGE_STRING" redefined 102 | #define PACKAGE_STRING "libghemical 3.0.0" | ^~~~~~~~~~~~~~ /usr/include/mpqc/scconfig.h:281:9: note: this is the location of the previous definition 281 | #define PACKAGE_STRING "" | ^~~~~~~~~~~~~~ libghemicalconfig.h:105:9: warning: "PACKAGE_TARNAME" redefined 105 | #define PACKAGE_TARNAME "libghemical" | ^~~~~~~~~~~~~~~ /usr/include/mpqc/scconfig.h:284:9: note: this is the location of the previous definition 284 | #define PACKAGE_TARNAME "" | ^~~~~~~~~~~~~~~ libghemicalconfig.h:111:9: warning: "PACKAGE_VERSION" redefined 111 | #define PACKAGE_VERSION "3.0.0" | ^~~~~~~~~~~~~~~ /usr/include/mpqc/scconfig.h:290:9: note: this is the location of the previous definition 290 | #define PACKAGE_VERSION "" | ^~~~~~~~~~~~~~~ In file included from eng2_qm_mm.h:28: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:90:155: warning: no return statement in function returning non-void [-Wreturn-type] 90 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng2_qm_mm.h:91:142: warning: no return statement in function returning non-void [-Wreturn-type] 91 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:127:155: warning: no return statement in function returning non-void [-Wreturn-type] 127 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng2_qm_mm.h:128:142: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o notice.lo notice.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c notice.cpp -fPIC -DPIC -o .libs/notice.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o conjgrad.lo conjgrad.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c conjgrad.cpp -fPIC -DPIC -o .libs/conjgrad.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o intcrd.lo intcrd.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c intcrd.cpp -fPIC -DPIC -o .libs/intcrd.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' intcrd.cpp: In constructor 'intcrd::intcrd(model&, i32s, i32s)': intcrd.cpp:82:47: warning: comparison of integer expressions of different signedness: 'int' and 'i32u' {aka 'unsigned int'} [-Wsign-compare] 82 | if ((* it1).GetConnRecCount() < nbonds) | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o search.lo search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c search.cpp -fPIC -DPIC -o .libs/search.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' In file included from search.h:35, from search.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ search.cpp: In constructor 'transition_state_search::transition_state_search(model*, f64, f64)': search.cpp:513:29: warning: comparison of integer expressions of different signedness: 'i32s' {aka 'int'} and 'i32u' {aka 'unsigned int'} [-Wsign-compare] 513 | for (i32s n1 = 0;n1 < mdl->GetCRDSetCount();n1++) | ~~~^~~~~~~~~~~~~~~~~~~~~~~ search.cpp:795:39: warning: comparison of integer expressions of different signedness: 'i32u' {aka 'unsigned int'} and 'int' [-Wsign-compare] 795 | if (engQM->l2g_qm[ii] != ii) problems = true; | ~~~~~~~~~~~~~~~~~~^~~~~ make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o geomopt.lo geomopt.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c geomopt.cpp -fPIC -DPIC -o .libs/geomopt.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' In file included from geomopt.h:31, from geomopt.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o moldyn.lo moldyn.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c moldyn.cpp -fPIC -DPIC -o .libs/moldyn.o moldyn.cpp: In member function 'virtual void moldyn::TakeMDStep(bool, bool)': moldyn.cpp:149:13: warning: variable 'current_temperature' set but not used [-Wunused-but-set-variable] 149 | f64 current_temperature = ConvEKinTemp(ekin); | ^~~~~~~~~~~~~~~~~~~ moldyn.cpp:242:55: warning: 'volume' may be used uninitialized [-Wmaybe-uninitialized] 242 | saved_density = 0.001 * sum_of_masses / volume; // kg/dm^3 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ moldyn.cpp:188:21: note: 'volume' was declared here 188 | f64 volume; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o eng1_sf.lo eng1_sf.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c eng1_sf.cpp -fPIC -DPIC -o .libs/eng1_sf.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' eng1_sf.cpp: In member function 'void setup1_sf::StorePStatesToModel(eng1_sf*)': eng1_sf.cpp:965:33: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 965 | if (tmpc < -0.5) charge -= 1; if (tmpc > +0.5) charge += 1; | ^~ eng1_sf.cpp:965:63: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 965 | if (tmpc < -0.5) charge -= 1; if (tmpc > +0.5) charge += 1; | ^~ eng1_sf.cpp: In constructor 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)': eng1_sf.cpp:1444:6: warning: variable 'h4flag_0' set but not used [-Wunused-but-set-variable] 1444 | bool h4flag_0 = false; if ((indr1 - 0) >= 0 && mysu->chn_vector[indc1].res_vector[indr1 - 0].state == SF_STATE_HELIX4) h4flag_0 = true; | ^~~~~~~~ eng1_sf.cpp:1447:6: warning: variable 'h4flag_3' set but not used [-Wunused-but-set-variable] 1447 | bool h4flag_3 = false; if ((indr1 - 3) >= 0 && mysu->chn_vector[indc1].res_vector[indr1 - 3].state == SF_STATE_HELIX4) h4flag_3 = true; | ^~~~~~~~ eng1_sf.cpp: In member function 'eng1_sf::ComputeBT3(unsigned int)': eng1_sf.cpp:3463:41: warning: 'cs[0]' may be used uninitialized [-Wmaybe-uninitialized] 3463 | loop1 += fsc[0] * cs[0] + fsc[1] * cs[1] + fsc[2] * cs[2]; | ~~~~~~~^~~~~~~ eng1_sf.cpp:3350:21: note: 'cs[0]' was declared here 3350 | f64 cs[3]; f64 sn[3]; | ^~ eng1_sf.cpp:3463:58: warning: 'cs[1]' may be used uninitialized [-Wmaybe-uninitialized] 3463 | loop1 += fsc[0] * cs[0] + fsc[1] * cs[1] + fsc[2] * cs[2]; | ~~~~~~~^~~~~~~ eng1_sf.cpp:3350:21: note: 'cs[1]' was declared here 3350 | f64 cs[3]; f64 sn[3]; | ^~ eng1_sf.cpp:3463:75: warning: 'cs[2]' may be used uninitialized [-Wmaybe-uninitialized] 3463 | loop1 += fsc[0] * cs[0] + fsc[1] * cs[1] + fsc[2] * cs[2]; | ~~~~~~~^~~~~~~ eng1_sf.cpp:3350:21: note: 'cs[2]' was declared here 3350 | f64 cs[3]; f64 sn[3]; | ^~ eng1_sf.cpp:3464:41: warning: 'sn[0]' may be used uninitialized [-Wmaybe-uninitialized] 3464 | loop1 += fss[0] * sn[0] + fss[1] * sn[1] + fss[2] * sn[2]; | ~~~~~~~^~~~~~~ eng1_sf.cpp:3350:32: note: 'sn[0]' was declared here 3350 | f64 cs[3]; f64 sn[3]; | ^~ eng1_sf.cpp:3464:58: warning: 'sn[1]' may be used uninitialized [-Wmaybe-uninitialized] 3464 | loop1 += fss[0] * sn[0] + fss[1] * sn[1] + fss[2] * sn[2]; | ~~~~~~~^~~~~~~ eng1_sf.cpp:3350:32: note: 'sn[1]' was declared here 3350 | f64 cs[3]; f64 sn[3]; | ^~ eng1_sf.cpp:3464:75: warning: 'sn[2]' may be used uninitialized [-Wmaybe-uninitialized] 3464 | loop1 += fss[0] * sn[0] + fss[1] * sn[1] + fss[2] * sn[2]; | ~~~~~~~^~~~~~~ eng1_sf.cpp:3350:32: note: 'sn[2]' was declared here 3350 | f64 cs[3]; f64 sn[3]; | ^~ make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o pop_ana.lo pop_ana.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c pop_ana.cpp -fPIC -DPIC -o .libs/pop_ana.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' In file included from pop_ana.h:31, from pop_ana.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o resonance.lo resonance.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c resonance.cpp -fPIC -DPIC -o .libs/resonance.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\""/usr/share/locale"\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o sasaeval.lo sasaeval.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/mpqc -DLOCALE_DIR=\"/usr/share/locale\" -I/usr/include/mpqc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c sasaeval.cpp -fPIC -DPIC -o .libs/sasaeval.o make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' sasaeval.cpp: In constructor 'sasaeval::sasaeval(engine*)': sasaeval.cpp:59:27: warning: comparison of integer expressions of different signedness: 'i32u' {aka 'unsigned int'} and 'i32s' {aka 'int'} [-Wsign-compare] 59 | for (i32u i = 0;i < natm_GLOB;i++) | ~~^~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -version-info 5:1:0 -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o libghemical.la -rpath /usr/lib atom.lo bond.lo constraint.lo model.lo engine.lo typerule.lo utility.lo chn_info.lo seqbuild.lo mfinder.lo eng1_qm.lo eng1_qm_mpqc.lo eng1_qm_mopac.lo eng1_mm.lo eng1_mm_tripos52.lo tab_mm_tripos52.lo eng1_mm_default.lo tab_mm_default.lo eng1_mm_prmfit.lo tab_mm_prmfit.lo eng1_sf.lo eng1_sf_ua.lo eng1_sf_cg.lo eng2_qm_mm.lo notice.lo conjgrad.lo intcrd.lo search.lo geomopt.lo moldyn.lo pop_ana.lo sasaeval.lo resonance.lo -lflexiblas -lflexiblas -lm -L/usr/lib -lSCoptions -lSCpsi -lSCmbptr12 -lSCmbpt -lSCwfn -lSCsolvent -lSCdft -lSCscf -lSCcints -lSCintv3 -lSCoint3 -lSCbasis -lSCmolecule -lSCisosurf -lSCoptimize -lSCsymmetry -lSCscmat -lSCgroup -lSCrender -lSCmisc -lSCstate -lSCkeyval -lSCclass -lSCcontainer -lSCref -lderiv -lr12 -lint -lm -ldl -lflexiblas -lflexiblas -lgfortran -lm -lquadmath -lflexiblas -lgfortran -lm -lquadmath -lmopac7 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-redhat-linux/14/../../../crti.o /usr/lib/gcc/i686-redhat-linux/14/crtbeginS.o .libs/atom.o .libs/bond.o .libs/constraint.o .libs/model.o .libs/engine.o .libs/typerule.o .libs/utility.o .libs/chn_info.o .libs/seqbuild.o .libs/mfinder.o .libs/eng1_qm.o .libs/eng1_qm_mpqc.o .libs/eng1_qm_mopac.o .libs/eng1_mm.o .libs/eng1_mm_tripos52.o .libs/tab_mm_tripos52.o .libs/eng1_mm_default.o .libs/tab_mm_default.o .libs/eng1_mm_prmfit.o .libs/tab_mm_prmfit.o .libs/eng1_sf.o .libs/eng1_sf_ua.o .libs/eng1_sf_cg.o .libs/eng2_qm_mm.o .libs/notice.o .libs/conjgrad.o .libs/intcrd.o .libs/search.o .libs/geomopt.o .libs/moldyn.o .libs/pop_ana.o .libs/sasaeval.o .libs/resonance.o -lm -L/usr/lib -lSCoptions -lSCpsi -lSCmbptr12 -lSCmbpt -lSCwfn -lSCsolvent -lSCdft -lSCscf -lSCcints -lSCintv3 -lSCoint3 -lSCbasis -lSCmolecule -lSCisosurf -lSCoptimize -lSCsymmetry -lSCscmat -lSCgroup -lSCrender -lSCmisc -lSCstate -lSCkeyval -lSCclass -lSCcontainer -lSCref -lderiv -lr12 -lint -lm -ldl -lm -lflexiblas -lgfortran -lm -lquadmath -lmopac7 -L/usr/lib/gcc/i686-redhat-linux/14 -L/usr/lib/gcc/i686-redhat-linux/14/../../.. -lstdc++ -lm -lgcc_s -lc -lgcc_s /usr/lib/gcc/i686-redhat-linux/14/crtendS.o /usr/lib/gcc/i686-redhat-linux/14/../../../crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -flto=auto -g -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-soname -Wl,libghemical.so.5 -o .libs/libghemical.so.5.0.1 libtool: link: (cd ".libs" && rm -f "libghemical.so.5" && ln -s "libghemical.so.5.0.1" "libghemical.so.5") libtool: link: (cd ".libs" && rm -f "libghemical.so" && ln -s "libghemical.so.5.0.1" "libghemical.so") libtool: link: ( cd ".libs" && rm -f "libghemical.la" && ln -s "../libghemical.la" "libghemical.la" ) make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' typerule.cpp: In member function 'ReadSubRule': typerule.cpp:183:50: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 183 | newring[tmp1[1]] = 0; | ^ typerule.cpp:182:84: note: at offset -1 into destination object of size 0 allocated by 'operator new []' 182 | signed char * newring = new signed char[tmp1[1] + 1]; | ^ Making all in bin Making all in amber make[2]: Nothing to be done for 'all'. Making all in builder make[2]: Nothing to be done for 'all'. Making all in param_mm Making all in default make[3]: Nothing to be done for 'all'. Making all in prmfit make[3]: Nothing to be done for 'all'. Making all in tripos52 make[3]: Nothing to be done for 'all'. make[3]: Nothing to be done for 'all-am'. Making all in param_sf Making all in default make[3]: Nothing to be done for 'all'. make[3]: Nothing to be done for 'all-am'. make[2]: Nothing to be done for 'all-am'. Making all in po make[1]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/po' make[1]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/po' grep: warning: stray \ before # grep: warning: stray \ before # grep: warning: stray \ before # make[1]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/po' file=`echo fi | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/bin/msgfmt -o $file fi.po make[1]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/po' make[1]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/po' file=`echo de | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/bin/msgfmt -o $file de.po make[1]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/po' make[1]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/po' file=`echo pt_BR | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/bin/msgfmt -o $file pt_BR.po make[1]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/po' make[1]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/po' file=`echo mk | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/bin/msgfmt -o $file mk.po make[1]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/po' make[1]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/po' file=`echo ru | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/bin/msgfmt -o $file ru.po make[1]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/po' make[1]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/po' file=`echo sq | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/bin/msgfmt -o $file sq.po make[1]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/po' make[1]: Nothing to be done for 'all-am'. + sed -ir -e 's/^Libs:.*/Libs: -L${libdir} -lghemical/g' libghemical.pc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Wcqe5O + umask 022 + cd /builddir/build/BUILD/libghemical-3.0.0-build + '[' /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/libghemical-3.0.0-build + mkdir /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libghemical-3.0.0 + /usr/bin/make install DESTDIR=/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT 'INSTALL=/usr/bin/install -p' Making install in src make[1]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' /usr/bin/mkdir -p '/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/lib' /bin/sh ../libtool --mode=install /usr/bin/install -p libghemical.la '/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/lib' libtool: install: /usr/bin/install -p .libs/libghemical.so.5.0.1 /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/lib/libghemical.so.5.0.1 libtool: install: (cd /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/lib && { ln -s -f libghemical.so.5.0.1 libghemical.so.5 || { rm -f libghemical.so.5 && ln -s libghemical.so.5.0.1 libghemical.so.5; }; }) libtool: install: (cd /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/lib && { ln -s -f libghemical.so.5.0.1 libghemical.so || { rm -f libghemical.so && ln -s libghemical.so.5.0.1 libghemical.so; }; }) libtool: install: /usr/bin/install -p .libs/libghemical.lai /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/lib/libghemical.la libtool: warning: remember to run 'libtool --finish /usr/lib' /usr/bin/mkdir -p '/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/include/ghemical' /usr/bin/install -p -m 644 libghemicaldefine.h libghemical-features.h local_i18n.h typedef.h v3d.h atom.h bond.h constraint.h model.h engine.h typerule.h utility.h chn_info.h seqbuild.h mfinder.h eng1_qm.h eng1_qm_mpqc.h eng1_qm_mopac.h eng1_mm.h eng1_mm_tripos52.h tab_mm_tripos52.h eng1_mm_default.h tab_mm_default.h eng1_mm_prmfit.h tab_mm_prmfit.h eng1_sf.h eng1_sf_ua.h eng1_sf_cg.h eng2_qm_mm.h notice.h conjgrad.h intcrd.h search.h geomopt.h moldyn.h pop_ana.h sasaeval.h resonance.h '/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/include/ghemical' make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' make[1]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/src' Making install in bin make[1]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin' Making install in amber make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/amber' make[3]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/amber' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/libghemical/3.0.0/amber' /usr/bin/install -p -m 644 all_amino94_MOD.in all_aminoct94.in all_aminont94.in all_nuc94_MOD.in parm99_frcmod_ff99SB.dat '/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/libghemical/3.0.0/amber' make[3]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/amber' make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/amber' Making install in builder make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/builder' make[3]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/builder' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/libghemical/3.0.0/builder' /usr/bin/install -p -m 644 amino.txt nucleic.txt '/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/libghemical/3.0.0/builder' make[3]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/builder' make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/builder' Making install in param_mm make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_mm' Making install in default make[3]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_mm/default' make[4]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_mm/default' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/libghemical/3.0.0/param_mm/default' /usr/bin/install -p -m 644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt '/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/libghemical/3.0.0/param_mm/default' make[4]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_mm/default' make[3]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_mm/default' Making install in prmfit make[3]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_mm/prmfit' make[4]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_mm/prmfit' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/libghemical/3.0.0/param_mm/prmfit' /usr/bin/install -p -m 644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt '/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/libghemical/3.0.0/param_mm/prmfit' make[4]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_mm/prmfit' make[3]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_mm/prmfit' Making install in tripos52 make[3]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_mm/tripos52' make[4]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_mm/tripos52' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/libghemical/3.0.0/param_mm/tripos52' /usr/bin/install -p -m 644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt parameters5.txt '/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/libghemical/3.0.0/param_mm/tripos52' make[4]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_mm/tripos52' make[3]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_mm/tripos52' make[3]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_mm' make[4]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_mm' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_mm' make[3]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_mm' make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_mm' Making install in param_sf make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_sf' Making install in default make[3]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_sf/default' make[4]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_sf/default' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/libghemical/3.0.0/param_sf/default' /usr/bin/install -p -m 644 loopdip.txt looptor.txt nonbonded.txt '/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/libghemical/3.0.0/param_sf/default' make[4]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_sf/default' make[3]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_sf/default' make[3]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_sf' make[4]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_sf' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_sf' make[3]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_sf' make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin/param_sf' make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin' make[3]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin' make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin' make[1]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/bin' Making install in po make[1]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/po' grep: warning: stray \ before # grep: warning: stray \ before # grep: warning: stray \ before # grep: warning: stray \ before # grep: warning: stray \ before # linguas="de fi mk pt_BR ru sq "; \ for lang in $linguas; do \ dir=/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/locale/$lang/LC_MESSAGES; \ /bin/sh /builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/install-sh -d $dir; \ if test -r $lang.gmo; then \ /usr/bin/install -p -m 644 $lang.gmo $dir/libghemical.mo; \ echo "installing $lang.gmo as $dir/libghemical.mo"; \ else \ /usr/bin/install -p -m 644 ./$lang.gmo $dir/libghemical.mo; \ echo "installing ./$lang.gmo as" \ "$dir/libghemical.mo"; \ fi; \ if test -r $lang.gmo.m; then \ /usr/bin/install -p -m 644 $lang.gmo.m $dir/libghemical.mo.m; \ echo "installing $lang.gmo.m as $dir/libghemical.mo.m"; \ else \ if test -r ./$lang.gmo.m ; then \ /usr/bin/install -p -m 644 ./$lang.gmo.m \ $dir/libghemical.mo.m; \ echo "installing ./$lang.gmo.m as" \ "$dir/libghemical.mo.m"; \ else \ true; \ fi; \ fi; \ done installing de.gmo as /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/locale/de/LC_MESSAGES/libghemical.mo installing fi.gmo as /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/locale/fi/LC_MESSAGES/libghemical.mo installing mk.gmo as /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/locale/mk/LC_MESSAGES/libghemical.mo installing pt_BR.gmo as /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/locale/pt_BR/LC_MESSAGES/libghemical.mo installing ru.gmo as /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/locale/ru/LC_MESSAGES/libghemical.mo installing sq.gmo as /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/locale/sq/LC_MESSAGES/libghemical.mo make[1]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/po' make[1]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0' make[2]: Entering directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/lib/pkgconfig' /usr/bin/install -p -m 644 libghemical.pc '/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/lib/pkgconfig' make[2]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0' make[1]: Leaving directory '/builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0' + find /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/lib -name '*.la' -exec rm -rf '{}' ';' + /usr/lib/rpm/find-lang.sh /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT libghemical + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.0.0-25.fc41 --unique-debug-suffix -3.0.0-25.fc41.i386 --unique-debug-src-base libghemical-3.0.0-25.fc41.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/libghemical-3.0.0-25.fc41.i386 2117 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT Scanned 37 directories and 141 files, processed 0 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/libghemical-3.0.0-build/SPECPARTS/rpm-debuginfo.specpart Processing files: libghemical-3.0.0-25.fc41.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.o3uoxn + umask 022 + cd /builddir/build/BUILD/libghemical-3.0.0-build + cd libghemical-3.0.0 + DOCDIR=/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/doc/libghemical + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/doc/libghemical + cp -pr /builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/AUTHORS /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/doc/libghemical + cp -pr /builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/ChangeLog /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/doc/libghemical + cp -pr /builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/TODO /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/doc/libghemical + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.eCAGGm + umask 022 + cd /builddir/build/BUILD/libghemical-3.0.0-build + cd libghemical-3.0.0 + LICENSEDIR=/builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/licenses/libghemical + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/licenses/libghemical + cp -pr /builddir/build/BUILD/libghemical-3.0.0-build/libghemical-3.0.0/COPYING /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT/usr/share/licenses/libghemical + RPM_EC=0 ++ jobs -p + exit 0 Provides: libghemical = 3.0.0-25.fc41 libghemical(x86-32) = 3.0.0-25.fc41 libghemical.so.5 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libSCbasis.so.7 libSCcints.so.7 libSCclass.so.7 libSCcontainer.so.7 libSCdft.so.7 libSCgroup.so.7 libSCintv3.so.7 libSCisosurf.so.7 libSCkeyval.so.7 libSCmbpt.so.7 libSCmbptr12.so.7 libSCmisc.so.7 libSCmolecule.so.7 libSCoint3.so.7 libSCoptimize.so.7 libSCoptions.so.7 libSCpsi.so.7 libSCref.so.7 libSCrender.so.7 libSCscf.so.7 libSCscmat.so.7 libSCsolvent.so.7 libSCstate.so.7 libSCsymmetry.so.7 libSCwfn.so.7 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_ABI_DT_RELR) libderiv-stable.so.1 libflexiblas.so.3 libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_3.3.1) libgfortran.so.5 libint-stable.so.1 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.29) libmopac7.so.1 libquadmath.so.0 libr12-stable.so.1 libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.15) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.26) libstdc++.so.6(GLIBCXX_3.4.29) libstdc++.so.6(GLIBCXX_3.4.30) libstdc++.so.6(GLIBCXX_3.4.32) libstdc++.so.6(GLIBCXX_3.4.9) rtld(GNU_HASH) Processing files: libghemical-devel-3.0.0-25.fc41.i686 Provides: libghemical-devel = 3.0.0-25.fc41 libghemical-devel(x86-32) = 3.0.0-25.fc41 pkgconfig(libghemical) = 3.0.0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config libghemical.so.5 pkgconfig(libmopac7) Processing files: libghemical-debugsource-3.0.0-25.fc41.i686 Provides: libghemical-debugsource = 3.0.0-25.fc41 libghemical-debugsource(x86-32) = 3.0.0-25.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: libghemical-debuginfo-3.0.0-25.fc41.i686 Provides: debuginfo(build-id) = b5be0687b355eba704a7ef355bd7d361960efb87 libghemical-debuginfo = 3.0.0-25.fc41 libghemical-debuginfo(x86-32) = 3.0.0-25.fc41 libghemical.so.5.0.1-3.0.0-25.fc41.i386.debug Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libghemical-debugsource(x86-32) = 3.0.0-25.fc41 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/libghemical-3.0.0-build/BUILDROOT Wrote: /builddir/build/RPMS/libghemical-3.0.0-25.fc41.i686.rpm Wrote: /builddir/build/RPMS/libghemical-debugsource-3.0.0-25.fc41.i686.rpm Wrote: /builddir/build/RPMS/libghemical-devel-3.0.0-25.fc41.i686.rpm Wrote: /builddir/build/RPMS/libghemical-debuginfo-3.0.0-25.fc41.i686.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.bUB7cM + umask 022 + cd /builddir/build/BUILD/libghemical-3.0.0-build + test -d /builddir/build/BUILD/libghemical-3.0.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/libghemical-3.0.0-build + rm -rf /builddir/build/BUILD/libghemical-3.0.0-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild libghemical-3.0.0-25.fc41.src.rpm Finish: build phase for libghemical-3.0.0-25.fc41.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1721329343.891941/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/libghemical-3.0.0-25.fc41.src.rpm) Config(child) 1 minutes 19 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "libghemical", "epoch": null, "version": "3.0.0", "release": "25.fc41", "arch": "i686" }, { "name": "libghemical-devel", "epoch": null, "version": "3.0.0", "release": "25.fc41", "arch": "i686" }, { "name": "libghemical-debuginfo", "epoch": null, "version": "3.0.0", "release": "25.fc41", "arch": "i686" }, { "name": "libghemical", "epoch": null, "version": "3.0.0", "release": "25.fc41", "arch": "src" }, { "name": "libghemical-debugsource", "epoch": null, "version": "3.0.0", "release": "25.fc41", "arch": "i686" } ] } RPMResults finished