Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1cd' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7980033-fedora-rawhide-i386 --chroot fedora-rawhide-i386 Version: 0.73 PID: 13568 Logging PID: 13569 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7980033, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-i386', 'enable_net': False, 'fedora_review': False, 'git_hash': '43ab922901e85e3113e694a2b5ae9963a9f62ae8', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/pymol', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'pymol', 'package_version': '2.5.0-13', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-rawhide-i386/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/msuchy', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/msuchy', 'tags': [], 'task_id': '7980033-fedora-rawhide-i386', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/pymol /var/lib/copr-rpmbuild/workspace/workdir-7zcx8oel/pymol --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/pymol', '/var/lib/copr-rpmbuild/workspace/workdir-7zcx8oel/pymol', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-7zcx8oel/pymol'... Running: git checkout 43ab922901e85e3113e694a2b5ae9963a9f62ae8 -- cmd: ['git', 'checkout', '43ab922901e85e3113e694a2b5ae9963a9f62ae8', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-7zcx8oel/pymol rc: 0 stdout: stderr: Note: switching to '43ab922901e85e3113e694a2b5ae9963a9f62ae8'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 43ab922 automatic import of pymol Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-7zcx8oel/pymol rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading pymol-open-source-2.5.0.tar.gz INFO: Reading stdout from command: curl --help all /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated INFO: Calling: curl -H Pragma: -o pymol-open-source-2.5.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/pymol/pymol-open-source-2.5.0.tar.gz/md5/1c2d43789dd5580958fd75672ecfd8e7/pymol-open-source-2.5.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 9.9M 100 9.9M 0 0 55.8M 0 --:--:-- --:--:-- --:--:-- 56.0M INFO: Reading stdout from command: md5sum pymol-open-source-2.5.0.tar.gz INFO: Downloading pymol.png INFO: Calling: curl -H Pragma: -o pymol.png --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/pymol/pymol.png/md5/3bbd85dbd40f588f505ad988b6df2933/pymol.png % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 19466 100 19466 0 0 444k 0 --:--:-- --:--:-- --:--:-- 452k INFO: Reading stdout from command: md5sum pymol.png Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-7zcx8oel/pymol/pymol.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-7zcx8oel/pymol --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725482711.328960 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-7zcx8oel/pymol/pymol.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-7zcx8oel/pymol --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725482711.328960 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-7zcx8oel/pymol/pymol.spec) Config(fedora-rawhide-i686) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1725482711.328960/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-i686-bootstrap-1725482711.328960/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/d3c513cc9c079daa4915dff871501a2918b9936f70c4e817aef7ba20374f3661/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/d3c513cc9c079daa4915dff871501a2918b9936f70c4e817aef7ba20374f3661/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1725482711.328960/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-6.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.5.0-2.fc41.x86_64 dnf5-plugins-5.2.5.0-2.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: local 100% | 50.1 MiB/s | 12.7 MiB | 00m00s Copr repository 100% | 13.6 MiB/s | 2.8 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 42.4 MiB/s | 12.7 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash i686 5.2.32-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.3 MiB bzip2 i686 1.0.8-19.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 93.9 KiB coreutils i686 9.5-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.7 MiB cpio i686 2.15-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB diffutils i686 3.10-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB fedora-release noarch 42-0.3 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B findutils i686 1:4.10.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 MiB gawk i686 5.3.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB glibc-minimal-langpack i686 2.40-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B grep i686 3.11-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB gzip i686 1.13-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 388.1 KiB info i686 7.1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 360.4 KiB patch i686 2.7.6-25.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 298.0 KiB redhat-rpm-config noarch 294-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 186.4 KiB rpm-build i686 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 178.1 KiB sed i686 4.9-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 860.6 KiB shadow-utils i686 2:4.15.1-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.0 MiB tar i686 2:1.35-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB unzip i686 6.0-64.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 396.3 KiB util-linux i686 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.5 MiB which i686 2.21-42.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.9 KiB xz i686 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB Installing dependencies: add-determinism i686 0.3.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB alternatives i686 1.30-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 65.5 KiB ansible-srpm-macros noarch 1-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.7 KiB audit-libs i686 4.0.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 341.8 KiB authselect i686 1.5.0-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 160.6 KiB authselect-libs i686 1.5.0-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 821.4 KiB basesystem noarch 11-21.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B binutils i686 2.43.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 25.4 MiB build-reproducibility-srpm-macros noarch 0.3.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 735.0 B bzip2-libs i686 1.0.8-19.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 76.0 KiB ca-certificates noarch 2024.2.68_v8.0.302-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB coreutils-common i686 9.5-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.2 MiB cracklib i686 2.9.11-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235.8 KiB crypto-policies noarch 20240828-1.git5f66e81.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.9 KiB curl i686 8.9.1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 799.4 KiB cyrus-sasl-lib i686 2.1.28-27.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB debugedit i686 5.0-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.9 KiB dwz i686 0.15-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 328.9 KiB ed i686 1.20.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 141.7 KiB efi-srpm-macros noarch 5-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 KiB elfutils i686 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB elfutils-debuginfod-client i686 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55.3 KiB elfutils-default-yama-scope noarch 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB elfutils-libelf i686 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB elfutils-libs i686 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 700.8 KiB fedora-gpg-keys noarch 42-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 126.4 KiB fedora-release-common noarch 42-0.3 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19.4 KiB fedora-release-identity-basic noarch 42-0.3 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0 B fedora-repos noarch 42-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 KiB fedora-repos-rawhide noarch 42-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 KiB file i686 5.45-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 94.5 KiB file-libs i686 5.45-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.9 MiB filesystem i686 3.18-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.0 B fonts-srpm-macros noarch 1:2.0.5-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55.8 KiB forge-srpm-macros noarch 0.3.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.0 KiB fpc-srpm-macros noarch 1.3-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0 B gdb-minimal i686 15.1-1.fc42 copr_base 13.6 MiB gdbm i686 1:1.23-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 449.8 KiB gdbm-libs i686 1:1.23-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 124.6 KiB ghc-srpm-macros noarch 1.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 747.0 B glibc i686 2.40-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.5 MiB glibc-common i686 2.40-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB glibc-gconv-extra i686 2.40-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.4 MiB gmp i686 1:6.3.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 738.5 KiB gnat-srpm-macros noarch 6-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 KiB go-srpm-macros noarch 3.6.0-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 60.8 KiB jansson i686 2.13.1-10.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 87.6 KiB kernel-srpm-macros noarch 1.0-24.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB keyutils-libs i686 1.6.3-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 57.6 KiB krb5-libs i686 1.21.3-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB libacl i686 2.3.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.3 KiB libarchive i686 3.7.4-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 994.4 KiB libattr i686 2.5.2-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 23.8 KiB libblkid i686 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 285.5 KiB libbrotli i686 1.1.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 859.5 KiB libcap i686 2.70-4.fc41 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183.7 KiB libssh i686 0.11.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 611.6 KiB libssh-config noarch 0.11.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.0 B libstdc++ i686 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.8 MiB libtasn1 i686 4.19.0-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 179.0 KiB libtirpc i686 1.3.5-0.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 213.8 KiB libtool-ltdl i686 2.4.7-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 69.4 KiB libunistring i686 1.1-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB libuuid i686 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.7 KiB libverto i686 0.3.2-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 28.8 KiB libxcrypt i686 4.4.36-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 278.2 KiB libxml2 i686 2.12.8-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB libzstd i686 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 727.1 KiB lua-libs i686 5.4.6-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 308.6 KiB lua-srpm-macros noarch 1-14.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 KiB lz4-libs i686 1.10.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.8 KiB mpfr i686 4.2.1-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 966.6 KiB ncurses-base noarch 6.5-2.20240629.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.3 KiB ncurses-libs i686 6.5-2.20240629.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 971.0 KiB ocaml-srpm-macros noarch 10-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0 B openldap i686 2.6.8-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 677.7 KiB openssl-libs i686 1:3.2.2-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.3 MiB p11-kit i686 0.25.5-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB p11-kit-trust i686 0.25.5-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 361.6 KiB package-notes-srpm-macros noarch 0.5-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam i686 1.6.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB pam-libs i686 1.6.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 132.7 KiB pcre2 i686 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 660.1 KiB pcre2-syntax noarch 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-56.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf i686 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 87.0 KiB pkgconf-m4 noarch 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB pkgconf-pkg-config i686 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 979.0 B popt i686 1.19-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.0 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.14.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.14-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.7.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline i686 8.2-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 465.5 KiB rpm i686 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB rpm-build-libs i686 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.4 KiB rpm-libs i686 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 764.8 KiB rpm-sequoia i686 1.7.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB rust-srpm-macros noarch 26.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs i686 3.46.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB systemd-libs i686 256.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB util-linux-core i686 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB xxhash-libs i686 0.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 115.9 KiB xz-libs i686 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 229.8 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip i686 3.0-41.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 707.1 KiB zlib-ng-compat i686 2.1.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.4 KiB zstd i686 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB Installing groups: build Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation 176 MiB will be used (install 176 MiB, remove 0 B). [ 1/153] bzip2-0:1.0.8-19.fc41.i686 100% | 694.2 KiB/s | 52.8 KiB | 00m00s [ 2/153] bash-0:5.2.32-2.fc42.i686 100% | 16.3 MiB/s | 1.8 MiB | 00m00s [ 3/153] coreutils-0:9.5-9.fc42.i686 100% | 10.0 MiB/s | 1.2 MiB | 00m00s [ 4/153] cpio-0:2.15-2.fc41.i686 100% | 5.2 MiB/s | 290.8 KiB | 00m00s [ 5/153] diffutils-0:3.10-8.fc41.i686 100% | 18.8 MiB/s | 403.3 KiB | 00m00s [ 6/153] fedora-release-0:42-0.3.noarc 100% | 764.2 KiB/s | 12.2 KiB | 00m00s [ 7/153] glibc-minimal-langpack-0:2.40 100% | 5.8 MiB/s | 124.0 KiB | 00m00s [ 8/153] gawk-0:5.3.0-4.fc41.i686 100% | 30.8 MiB/s | 1.0 MiB | 00m00s [ 9/153] grep-0:3.11-9.fc41.i686 100% | 14.4 MiB/s | 295.5 KiB | 00m00s [ 10/153] info-0:7.1-3.fc41.i686 100% | 10.1 MiB/s | 186.0 KiB | 00m00s [ 11/153] gzip-0:1.13-2.fc41.i686 100% | 5.3 MiB/s | 162.6 KiB | 00m00s [ 12/153] findutils-1:4.10.0-4.fc41.i68 100% | 8.2 MiB/s | 551.1 KiB | 00m00s [ 13/153] redhat-rpm-config-0:294-1.fc4 100% | 4.3 MiB/s | 75.5 KiB | 00m00s [ 14/153] rpm-build-0:4.19.93-1.fc42.i6 100% | 4.4 MiB/s | 76.5 KiB | 00m00s [ 15/153] patch-0:2.7.6-25.fc41.i686 100% | 4.2 MiB/s | 142.2 KiB | 00m00s [ 16/153] sed-0:4.9-3.fc41.i686 100% | 14.5 MiB/s | 311.4 KiB | 00m00s [ 17/153] shadow-utils-2:4.15.1-9.fc41. 100% | 26.2 MiB/s | 1.3 MiB | 00m00s [ 18/153] unzip-0:6.0-64.fc41.i686 100% | 5.5 MiB/s | 180.7 KiB | 00m00s [ 19/153] which-0:2.21-42.fc41.i686 100% | 2.4 MiB/s | 41.5 KiB | 00m00s [ 20/153] xz-1:5.6.2-2.fc41.i686 100% | 17.4 MiB/s | 462.9 KiB | 00m00s [ 21/153] glibc-0:2.40-3.fc41.i686 100% | 33.2 MiB/s | 2.0 MiB | 00m00s [ 22/153] xz-libs-1:5.6.2-2.fc41.i686 100% | 5.7 MiB/s | 122.7 KiB | 00m00s [ 23/153] util-linux-0:2.40.2-8.fc42.i6 100% | 8.5 MiB/s | 1.2 MiB | 00m00s [ 24/153] authselect-libs-0:1.5.0-7.fc4 100% | 9.6 MiB/s | 207.5 KiB | 00m00s [ 25/153] audit-libs-0:4.0.2-1.fc41.i68 100% | 5.0 MiB/s | 129.0 KiB | 00m00s [ 26/153] libcap-ng-0:0.8.5-3.fc41.i686 100% | 1.6 MiB/s | 33.2 KiB | 00m00s [ 27/153] libblkid-0:2.40.2-8.fc42.i686 100% | 5.4 MiB/s | 137.5 KiB | 00m00s [ 28/153] libfdisk-0:2.40.2-8.fc42.i686 100% | 9.0 MiB/s | 176.0 KiB | 00m00s [ 29/153] libmount-0:2.40.2-8.fc42.i686 100% | 8.9 MiB/s | 163.3 KiB | 00m00s [ 30/153] libselinux-0:3.7-5.fc41.i686 100% | 5.3 MiB/s | 92.4 KiB | 00m00s [ 31/153] libsmartcols-0:2.40.2-8.fc42. 100% | 5.0 MiB/s | 86.2 KiB | 00m00s [ 32/153] libuuid-0:2.40.2-8.fc42.i686 100% | 1.8 MiB/s | 30.6 KiB | 00m00s [ 33/153] ncurses-libs-0:6.5-2.20240629 100% | 17.3 MiB/s | 355.3 KiB | 00m00s [ 34/153] pam-libs-0:1.6.1-6.fc42.i686 100% | 3.4 MiB/s | 59.6 KiB | 00m00s [ 35/153] pam-0:1.6.1-6.fc42.i686 100% | 20.0 MiB/s | 531.9 KiB | 00m00s [ 36/153] tar-2:1.35-4.fc41.i686 100% | 2.7 MiB/s | 866.7 KiB | 00m00s [ 37/153] readline-0:8.2-11.fc42.i686 100% | 11.3 MiB/s | 219.0 KiB | 00m00s [ 38/153] systemd-libs-0:256.5-1.fc42.i 100% | 30.2 MiB/s | 772.8 KiB | 00m00s [ 39/153] zlib-ng-compat-0:2.1.7-2.fc41 100% | 4.0 MiB/s | 82.1 KiB | 00m00s [ 40/153] bzip2-libs-0:1.0.8-19.fc41.i6 100% | 2.4 MiB/s | 41.3 KiB | 00m00s [ 41/153] libacl-0:2.3.2-2.fc41.i686 100% | 1.5 MiB/s | 26.0 KiB | 00m00s [ 42/153] libcap-0:2.70-4.fc41.i686 100% | 4.8 MiB/s | 88.3 KiB | 00m00s [ 43/153] util-linux-core-0:2.40.2-8.fc 100% | 9.3 MiB/s | 535.7 KiB | 00m00s [ 44/153] libgcc-0:14.2.1-1.fc42.i686 100% | 7.7 MiB/s | 150.2 KiB | 00m00s [ 45/153] libattr-0:2.5.2-4.fc41.i686 100% | 926.0 KiB/s | 18.5 KiB | 00m00s [ 46/153] libeconf-0:0.6.2-3.fc41.i686 100% | 2.0 MiB/s | 34.1 KiB | 00m00s [ 47/153] libsemanage-0:3.7-2.fc41.i686 100% | 6.8 MiB/s | 125.8 KiB | 00m00s [ 48/153] setup-0:2.15.0-5.fc41.noarch 100% | 8.0 MiB/s | 148.3 KiB | 00m00s [ 49/153] libxcrypt-0:4.4.36-7.fc41.i68 100% | 4.4 MiB/s | 120.6 KiB | 00m00s [ 50/153] debugedit-0:5.0-17.fc41.i686 100% | 3.8 MiB/s | 81.1 KiB | 00m00s [ 51/153] elfutils-0:0.191-8.fc41.i686 100% | 18.3 MiB/s | 561.9 KiB | 00m00s [ 52/153] file-0:5.45-7.fc41.i686 100% | 2.7 MiB/s | 49.1 KiB | 00m00s [ 53/153] elfutils-libelf-0:0.191-8.fc4 100% | 5.8 MiB/s | 214.0 KiB | 00m00s [ 54/153] binutils-0:2.43.1-1.fc42.i686 100% | 62.5 MiB/s | 5.9 MiB | 00m00s [ 55/153] pkgconf-pkg-config-0:2.3.0-1. 100% | 414.7 KiB/s | 10.0 KiB | 00m00s [ 56/153] popt-0:1.19-7.fc41.i686 100% | 2.9 MiB/s | 61.5 KiB | 00m00s [ 57/153] rpm-0:4.19.93-1.fc42.i686 100% | 22.2 MiB/s | 523.5 KiB | 00m00s [ 58/153] libarchive-0:3.7.4-3.fc41.i68 100% | 8.0 MiB/s | 451.3 KiB | 00m00s [ 59/153] rpm-build-libs-0:4.19.93-1.fc 100% | 5.7 MiB/s | 105.5 KiB | 00m00s [ 60/153] zstd-0:1.5.6-2.fc41.i686 100% | 15.9 MiB/s | 455.8 KiB | 00m00s [ 61/153] curl-0:8.9.1-3.fc42.i686 100% | 14.3 MiB/s | 321.4 KiB | 00m00s [ 62/153] rpm-libs-0:4.19.93-1.fc42.i68 100% | 8.1 MiB/s | 340.1 KiB | 00m00s [ 63/153] ansible-srpm-macros-0:1-16.fc 100% | 1.3 MiB/s | 20.8 KiB | 00m00s [ 64/153] build-reproducibility-srpm-ma 100% | 623.7 KiB/s | 10.6 KiB | 00m00s [ 65/153] dwz-0:0.15-7.fc41.i686 100% | 7.9 MiB/s | 145.9 KiB | 00m00s [ 66/153] efi-srpm-macros-0:5-12.fc41.n 100% | 1.3 MiB/s | 22.4 KiB | 00m00s [ 67/153] fonts-srpm-macros-1:2.0.5-17. 100% | 1.5 MiB/s | 27.0 KiB | 00m00s [ 68/153] forge-srpm-macros-0:0.3.2-1.f 100% | 1.2 MiB/s | 19.7 KiB | 00m00s [ 69/153] fpc-srpm-macros-0:1.3-13.fc41 100% | 497.6 KiB/s | 8.0 KiB | 00m00s [ 70/153] ghc-srpm-macros-0:1.9.1-2.fc4 100% | 532.7 KiB/s | 9.1 KiB | 00m00s [ 71/153] gnat-srpm-macros-0:6-6.fc41.n 100% | 497.3 KiB/s | 9.0 KiB | 00m00s [ 72/153] go-srpm-macros-0:3.6.0-3.fc41 100% | 1.5 MiB/s | 28.0 KiB | 00m00s [ 73/153] kernel-srpm-macros-0:1.0-24.f 100% | 616.8 KiB/s | 9.9 KiB | 00m00s [ 74/153] lua-srpm-macros-0:1-14.fc41.n 100% | 554.9 KiB/s | 8.9 KiB | 00m00s [ 75/153] ocaml-srpm-macros-0:10-3.fc41 100% | 541.1 KiB/s | 9.2 KiB | 00m00s [ 76/153] openblas-srpm-macros-0:2-18.f 100% | 482.2 KiB/s | 7.7 KiB | 00m00s [ 77/153] glibc-gconv-extra-0:2.40-3.fc 100% | 12.0 MiB/s | 1.7 MiB | 00m00s [ 78/153] package-notes-srpm-macros-0:0 100% | 578.2 KiB/s | 9.8 KiB | 00m00s [ 79/153] perl-srpm-macros-0:1-56.fc41. 100% | 532.0 KiB/s | 8.5 KiB | 00m00s [ 80/153] pyproject-srpm-macros-0:1.14. 100% | 839.1 KiB/s | 13.4 KiB | 00m00s [ 81/153] python-srpm-macros-0:3.13-3.f 100% | 1.4 MiB/s | 23.7 KiB | 00m00s [ 82/153] qt5-srpm-macros-0:5.15.14-3.f 100% | 560.8 KiB/s | 9.0 KiB | 00m00s [ 83/153] qt6-srpm-macros-0:6.7.2-3.fc4 100% | 570.4 KiB/s | 9.1 KiB | 00m00s [ 84/153] rust-srpm-macros-0:26.3-3.fc4 100% | 756.2 KiB/s | 12.1 KiB | 00m00s [ 85/153] zig-srpm-macros-0:1-3.fc41.no 100% | 477.8 KiB/s | 8.1 KiB | 00m00s [ 86/153] pkgconf-0:2.3.0-1.fc42.i686 100% | 2.5 MiB/s | 45.5 KiB | 00m00s [ 87/153] pkgconf-m4-0:2.3.0-1.fc42.noa 100% | 842.4 KiB/s | 14.3 KiB | 00m00s [ 88/153] zip-0:3.0-41.fc41.i686 100% | 8.2 MiB/s | 267.5 KiB | 00m00s [ 89/153] libpkgconf-0:2.3.0-1.fc42.i68 100% | 2.3 MiB/s | 41.7 KiB | 00m00s [ 90/153] ed-0:1.20.2-2.fc41.i686 100% | 4.4 MiB/s | 81.2 KiB | 00m00s [ 91/153] gdbm-1:1.23-7.fc41.i686 100% | 8.1 MiB/s | 149.5 KiB | 00m00s [ 92/153] gdbm-libs-1:1.23-7.fc41.i686 100% | 3.2 MiB/s | 59.8 KiB | 00m00s [ 93/153] authselect-0:1.5.0-7.fc41.i68 100% | 5.3 MiB/s | 142.3 KiB | 00m00s [ 94/153] libnsl2-0:2.0.1-2.fc41.i686 100% | 1.8 MiB/s | 30.7 KiB | 00m00s [ 95/153] libpwquality-0:1.4.5-11.fc41. 100% | 6.3 MiB/s | 109.0 KiB | 00m00s [ 96/153] libtirpc-0:1.3.5-0.fc41.i686 100% | 5.5 MiB/s | 102.0 KiB | 00m00s [ 97/153] crypto-policies-0:20240828-1. 100% | 3.6 MiB/s | 69.9 KiB | 00m00s [ 98/153] ca-certificates-0:2024.2.68_v 100% | 24.2 MiB/s | 868.2 KiB | 00m00s [ 99/153] ncurses-base-0:6.5-2.20240629 100% | 3.5 MiB/s | 63.8 KiB | 00m00s [100/153] libcom_err-0:1.47.1-3.fc41.i6 100% | 1.4 MiB/s | 26.9 KiB | 00m00s [101/153] krb5-libs-0:1.21.3-2.fc41.i68 100% | 23.1 MiB/s | 804.5 KiB | 00m00s [102/153] libsepol-0:3.7-2.fc41.i686 100% | 17.4 MiB/s | 355.7 KiB | 00m00s [103/153] pcre2-0:10.44-1.fc41.1.i686 100% | 11.7 MiB/s | 240.0 KiB | 00m00s [104/153] cracklib-0:2.9.11-6.fc41.i686 100% | 4.5 MiB/s | 82.5 KiB | 00m00s [105/153] libzstd-0:1.5.6-2.fc41.i686 100% | 13.3 MiB/s | 285.8 KiB | 00m00s [106/153] libxml2-0:2.12.8-2.fc41.i686 100% | 23.8 MiB/s | 730.6 KiB | 00m00s [107/153] lz4-libs-0:1.10.0-1.fc41.i686 100% | 3.8 MiB/s | 73.5 KiB | 00m00s [108/153] keyutils-libs-0:1.6.3-4.fc41. 100% | 1.6 MiB/s | 32.0 KiB | 00m00s [109/153] libverto-0:0.3.2-9.fc41.i686 100% | 1.2 MiB/s | 21.2 KiB | 00m00s [110/153] glibc-common-0:2.40-3.fc41.i6 100% | 19.3 MiB/s | 414.9 KiB | 00m00s [111/153] openssl-libs-1:3.2.2-5.fc41.i 100% | 13.2 MiB/s | 2.3 MiB | 00m00s [112/153] basesystem-0:11-21.fc41.noarc 100% | 460.8 KiB/s | 7.4 KiB | 00m00s [113/153] gmp-1:6.3.0-2.fc41.i686 100% | 15.2 MiB/s | 311.3 KiB | 00m00s [114/153] mpfr-0:4.2.1-5.fc41.i686 100% | 17.1 MiB/s | 385.0 KiB | 00m00s [115/153] fedora-release-common-0:42-0. 100% | 1.2 MiB/s | 23.0 KiB | 00m00s [116/153] file-libs-0:5.45-7.fc41.i686 100% | 22.1 MiB/s | 770.6 KiB | 00m00s [117/153] elfutils-debuginfod-client-0: 100% | 2.0 MiB/s | 37.6 KiB | 00m00s [118/153] filesystem-0:3.18-23.fc41.i68 100% | 12.7 MiB/s | 1.1 MiB | 00m00s [119/153] elfutils-libs-0:0.191-8.fc41. 100% | 14.2 MiB/s | 290.9 KiB | 00m00s [120/153] libstdc++-0:14.2.1-1.fc42.i68 100% | 33.3 MiB/s | 954.8 KiB | 00m00s [121/153] p11-kit-0:0.25.5-3.fc41.i686 100% | 18.1 MiB/s | 481.9 KiB | 00m00s [122/153] p11-kit-trust-0:0.25.5-3.fc41 100% | 7.5 MiB/s | 137.8 KiB | 00m00s [123/153] alternatives-0:1.30-1.fc41.i6 100% | 2.5 MiB/s | 42.8 KiB | 00m00s [124/153] add-determinism-0:0.3.6-1.fc4 100% | 24.2 MiB/s | 868.7 KiB | 00m00s [125/153] jansson-0:2.13.1-10.fc41.i686 100% | 2.6 MiB/s | 45.9 KiB | 00m00s [126/153] lua-libs-0:5.4.6-6.fc41.i686 100% | 8.1 MiB/s | 149.0 KiB | 00m00s [127/153] rpm-sequoia-0:1.7.0-2.fc41.i6 100% | 33.0 MiB/s | 980.1 KiB | 00m00s [128/153] sqlite-libs-0:3.46.0-4.fc41.i 100% | 23.1 MiB/s | 755.6 KiB | 00m00s [129/153] libgomp-0:14.2.1-1.fc42.i686 100% | 17.4 MiB/s | 355.4 KiB | 00m00s [130/153] pcre2-syntax-0:10.44-1.fc41.1 100% | 7.7 MiB/s | 149.9 KiB | 00m00s [131/153] libtasn1-0:4.19.0-9.fc41.i686 100% | 4.1 MiB/s | 75.3 KiB | 00m00s [132/153] coreutils-common-0:9.5-9.fc42 100% | 14.9 MiB/s | 2.1 MiB | 00m00s [133/153] libffi-0:3.4.6-3.fc42.i686 100% | 2.2 MiB/s | 38.0 KiB | 00m00s [134/153] fedora-release-identity-basic 100% | 813.4 KiB/s | 13.0 KiB | 00m00s [135/153] fedora-repos-0:42-0.1.noarch 100% | 573.1 KiB/s | 9.2 KiB | 00m00s [136/153] elfutils-default-yama-scope-0 100% | 769.0 KiB/s | 12.3 KiB | 00m00s [137/153] fedora-gpg-keys-0:42-0.1.noar 100% | 6.7 MiB/s | 123.3 KiB | 00m00s [138/153] fedora-repos-rawhide-0:42-0.1 100% | 546.4 KiB/s | 8.7 KiB | 00m00s [139/153] xxhash-libs-0:0.8.2-3.fc41.i6 100% | 2.5 MiB/s | 46.8 KiB | 00m00s [140/153] libcurl-0:8.9.1-3.fc42.i686 100% | 11.2 MiB/s | 389.7 KiB | 00m00s [141/153] libbrotli-0:1.1.0-5.fc41.i686 100% | 16.6 MiB/s | 339.4 KiB | 00m00s [142/153] libidn2-0:2.3.7-2.fc41.i686 100% | 6.5 MiB/s | 113.0 KiB | 00m00s [143/153] libnghttp2-0:1.63.0-1.fc42.i6 100% | 4.7 MiB/s | 82.3 KiB | 00m00s [144/153] libpsl-0:0.21.5-4.fc41.i686 100% | 3.7 MiB/s | 64.7 KiB | 00m00s [145/153] libssh-0:0.11.1-1.fc42.i686 100% | 12.2 MiB/s | 250.0 KiB | 00m00s [146/153] openldap-0:2.6.8-5.fc41.i686 100% | 8.6 MiB/s | 272.3 KiB | 00m00s [147/153] libevent-0:2.1.12-14.fc41.i68 100% | 7.3 MiB/s | 277.0 KiB | 00m00s [148/153] gdb-minimal-0:15.1-1.fc42.i68 100% | 31.1 MiB/s | 4.7 MiB | 00m00s [149/153] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 11.3 MiB/s | 860.0 KiB | 00m00s [150/153] libtool-ltdl-0:2.4.7-12.fc41. 100% | 1.9 MiB/s | 37.7 KiB | 00m00s [151/153] libssh-config-0:0.11.1-1.fc42 100% | 552.1 KiB/s | 9.4 KiB | 00m00s [152/153] publicsuffix-list-dafsa-0:202 100% | 3.3 MiB/s | 58.3 KiB | 00m00s [153/153] libunistring-0:1.1-8.fc41.i68 100% | 13.2 MiB/s | 553.3 KiB | 00m00s -------------------------------------------------------------------------------- [153/153] Total 100% | 32.3 MiB/s | 53.4 MiB | 00m02s Running transaction [ 1/155] Verify package files 100% | 768.0 B/s | 153.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-23.fc41.i686 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-23.fc41.i686 [ 2/155] Prepare transaction 100% | 1.9 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:14.2.1-1. 100% | 148.1 MiB/s | 303.4 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.2.1-1.fc42.i686 >>> Stop post-install scriptlet: libgcc-0:14.2.1-1.fc42.i686 [ 4/155] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 5/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/155] Installing fedora-release-ide 100% | 0.0 B/s | 952.0 B | 00m00s [ 7/155] Installing fedora-gpg-keys-0: 100% | 21.0 MiB/s | 172.2 KiB | 00m00s [ 8/155] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 9/155] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/155] Installing fedora-release-com 100% | 11.6 MiB/s | 23.7 KiB | 00m00s [ 11/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/155] Installing setup-0:2.15.0-5.f 100% | 50.6 MiB/s | 726.1 KiB | 00m00s >>> Running post-install scriptlet: setup-0:2.15.0-5.fc41.noarch >>> Stop post-install scriptlet: setup-0:2.15.0-5.fc41.noarch [ 13/155] Installing filesystem-0:3.18- 100% | 1.7 MiB/s | 212.0 KiB | 00m00s [ 14/155] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 15/155] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB | 00m00s [ 16/155] Installing coreutils-common-0 100% | 243.3 MiB/s | 11.2 MiB | 00m00s [ 17/155] Installing ncurses-base-0:6.5 100% | 42.9 MiB/s | 351.7 KiB | 00m00s [ 18/155] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 19/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [ 20/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [ 21/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [ 22/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [ 23/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [ 24/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [ 25/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [ 26/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [ 27/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [ 28/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 29/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [ 30/155] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [ 31/155] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 32/155] Installing ncurses-libs-0:6.5 100% | 159.1 MiB/s | 977.6 KiB | 00m00s >>> Running pre-install scriptlet: glibc-0:2.40-3.fc41.i686 >>> Stop pre-install scriptlet: glibc-0:2.40-3.fc41.i686 warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 33/155] Installing glibc-0:2.40-3.fc4 100% | 117.5 MiB/s | 5.5 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.40-3.fc41.i686 >>> Stop post-install scriptlet: glibc-0:2.40-3.fc41.i686 [ 34/155] Installing bash-0:5.2.32-2.fc 100% | 259.4 MiB/s | 8.3 MiB | 00m00s >>> Running post-install scriptlet: bash-0:5.2.32-2.fc42.i686 >>> Stop post-install scriptlet: bash-0:5.2.32-2.fc42.i686 [ 35/155] Installing glibc-common-0:2.4 100% | 115.6 MiB/s | 1.0 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 36/155] Installing glibc-gconv-extra- 100% | 118.4 MiB/s | 7.5 MiB | 00m00s >>> Running post-install scriptlet: glibc-gconv-extra-0:2.40-3.fc41.i686 >>> Stop post-install scriptlet: glibc-gconv-extra-0:2.40-3.fc41.i686 [ 37/155] Installing zlib-ng-compat-0:2 100% | 73.4 MiB/s | 150.2 KiB | 00m00s [ 38/155] Installing xz-libs-1:5.6.2-2. 100% | 225.4 MiB/s | 230.9 KiB | 00m00s [ 39/155] Installing bzip2-libs-0:1.0.8 100% | 75.3 MiB/s | 77.1 KiB | 00m00s [ 40/155] Installing libuuid-0:2.40.2-8 100% | 40.8 MiB/s | 41.8 KiB | 00m00s [ 41/155] Installing readline-0:8.2-11. 100% | 152.2 MiB/s | 467.6 KiB | 00m00s [ 42/155] Installing popt-0:1.19-7.fc41 100% | 34.8 MiB/s | 142.6 KiB | 00m00s [ 43/155] Installing libblkid-0:2.40.2- 100% | 139.9 MiB/s | 286.6 KiB | 00m00s [ 44/155] Installing libattr-0:2.5.2-4. 100% | 24.1 MiB/s | 24.7 KiB | 00m00s [ 45/155] Installing libacl-0:2.3.2-2.f 100% | 39.2 MiB/s | 40.1 KiB | 00m00s [ 46/155] Installing libxcrypt-0:4.4.36 100% | 137.2 MiB/s | 280.9 KiB | 00m00s [ 47/155] Installing libzstd-0:1.5.6-2. 100% | 237.1 MiB/s | 728.4 KiB | 00m00s [ 48/155] Installing elfutils-libelf-0: 100% | 235.3 MiB/s | 1.2 MiB | 00m00s [ 49/155] Installing gmp-1:6.3.0-2.fc41 100% | 241.1 MiB/s | 740.7 KiB | 00m00s [ 50/155] Installing libstdc++-0:14.2.1 100% | 255.3 MiB/s | 2.8 MiB | 00m00s [ 51/155] Installing libeconf-0:0.6.2-3 100% | 61.4 MiB/s | 62.9 KiB | 00m00s [ 52/155] Installing gdbm-libs-1:1.23-7 100% | 9.5 MiB/s | 126.3 KiB | 00m00s >>> Running pre-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42. >>> Stop pre-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.noa [ 53/155] Installing crypto-policies-0: 100% | 14.5 MiB/s | 163.2 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42 >>> Stop post-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.no [ 54/155] Installing mpfr-0:4.2.1-5.fc4 100% | 236.4 MiB/s | 968.2 KiB | 00m00s [ 55/155] Installing gawk-0:5.3.0-4.fc4 100% | 173.1 MiB/s | 1.7 MiB | 00m00s [ 56/155] Installing dwz-0:0.15-7.fc41. 100% | 161.3 MiB/s | 330.3 KiB | 00m00s [ 57/155] Installing unzip-0:6.0-64.fc4 100% | 130.1 MiB/s | 399.8 KiB | 00m00s [ 58/155] Installing file-libs-0:5.45-7 100% | 452.0 MiB/s | 9.9 MiB | 00m00s [ 59/155] Installing file-0:5.45-7.fc41 100% | 93.8 MiB/s | 96.0 KiB | 00m00s [ 60/155] Installing libcap-ng-0:0.8.5- 100% | 67.9 MiB/s | 69.5 KiB | 00m00s [ 61/155] Installing audit-libs-0:4.0.2 100% | 167.9 MiB/s | 343.9 KiB | 00m00s [ 62/155] Installing pam-libs-0:1.6.1-6 100% | 65.9 MiB/s | 134.9 KiB | 00m00s [ 63/155] Installing libcap-0:2.70-4.fc 100% | 68.4 MiB/s | 210.0 KiB | 00m00s [ 64/155] Installing systemd-libs-0:256 100% | 252.6 MiB/s | 2.0 MiB | 00m00s [ 65/155] Installing libsmartcols-0:2.4 100% | 180.5 MiB/s | 184.8 KiB | 00m00s [ 66/155] Installing libcom_err-0:1.47. 100% | 58.2 MiB/s | 59.6 KiB | 00m00s [ 67/155] Installing libsepol-0:3.7-2.f 100% | 284.6 MiB/s | 874.4 KiB | 00m00s [ 68/155] Installing pcre2-0:10.44-1.fc 100% | 215.3 MiB/s | 661.5 KiB | 00m00s [ 69/155] Installing libselinux-0:3.7-5 100% | 189.0 MiB/s | 193.5 KiB | 00m00s [ 70/155] Installing sed-0:4.9-3.fc41.i 100% | 121.2 MiB/s | 868.8 KiB | 00m00s [ 71/155] Installing grep-0:3.11-9.fc41 100% | 125.8 MiB/s | 1.0 MiB | 00m00s [ 72/155] Installing findutils-1:4.10.0 100% | 188.0 MiB/s | 1.9 MiB | 00m00s [ 73/155] Installing xz-1:5.6.2-2.fc41. 100% | 120.7 MiB/s | 1.2 MiB | 00m00s [ 74/155] Installing libmount-0:2.40.2- 100% | 189.4 MiB/s | 388.0 KiB | 00m00s [ 75/155] Installing lz4-libs-0:1.10.0- 100% | 142.4 MiB/s | 145.9 KiB | 00m00s [ 76/155] Installing alternatives-0:1.3 100% | 65.4 MiB/s | 67.0 KiB | 00m00s [ 77/155] Installing lua-libs-0:5.4.6-6 100% | 151.3 MiB/s | 309.8 KiB | 00m00s [ 78/155] Installing libtasn1-0:4.19.0- 100% | 176.6 MiB/s | 180.8 KiB | 00m00s [ 79/155] Installing libunistring-0:1.1 100% | 289.0 MiB/s | 1.7 MiB | 00m00s [ 80/155] Installing elfutils-default-y 100% | 204.3 KiB/s | 2.0 KiB | 00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.noar [ 81/155] Installing elfutils-libs-0:0. 100% | 171.5 MiB/s | 702.6 KiB | 00m00s [ 82/155] Installing libidn2-0:2.3.7-2. 100% | 80.6 MiB/s | 330.3 KiB | 00m00s [ 83/155] Installing libpsl-0:0.21.5-4. 100% | 75.1 MiB/s | 76.9 KiB | 00m00s [ 84/155] Installing zstd-0:1.5.6-2.fc4 100% | 260.6 MiB/s | 1.6 MiB | 00m00s [ 85/155] Installing util-linux-core-0: 100% | 131.5 MiB/s | 1.4 MiB | 00m00s [ 86/155] Installing tar-2:1.35-4.fc41. 100% | 230.7 MiB/s | 3.0 MiB | 00m00s [ 87/155] Installing libsemanage-0:3.7- 100% | 99.6 MiB/s | 305.9 KiB | 00m00s [ 88/155] Installing shadow-utils-2:4.1 100% | 127.4 MiB/s | 4.1 MiB | 00m00s [ 89/155] Installing zip-0:3.0-41.fc41. 100% | 173.6 MiB/s | 711.0 KiB | 00m00s [ 90/155] Installing gdbm-1:1.23-7.fc41 100% | 111.0 MiB/s | 454.7 KiB | 00m00s [ 91/155] Installing cyrus-sasl-lib-0:2 100% | 248.1 MiB/s | 2.5 MiB | 00m00s [ 92/155] Installing libfdisk-0:2.40.2- 100% | 200.9 MiB/s | 411.5 KiB | 00m00s [ 93/155] Installing bzip2-0:1.0.8-19.f 100% | 48.1 MiB/s | 98.4 KiB | 00m00s [ 94/155] Installing libxml2-0:2.12.8-2 100% | 258.7 MiB/s | 1.8 MiB | 00m00s [ 95/155] Installing add-determinism-0: 100% | 295.9 MiB/s | 2.1 MiB | 00m00s [ 96/155] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 97/155] Installing sqlite-libs-0:3.46 100% | 250.0 MiB/s | 1.5 MiB | 00m00s [ 98/155] Installing ed-0:1.20.2-2.fc41 100% | 70.3 MiB/s | 144.0 KiB | 00m00s [ 99/155] Installing patch-0:2.7.6-25.f 100% | 146.2 MiB/s | 299.5 KiB | 00m00s [100/155] Installing cpio-0:2.15-2.fc41 100% | 157.9 MiB/s | 1.1 MiB | 00m00s [101/155] Installing diffutils-0:3.10-8 100% | 177.2 MiB/s | 1.6 MiB | 00m00s [102/155] Installing libpkgconf-0:2.3.0 100% | 79.9 MiB/s | 81.8 KiB | 00m00s [103/155] Installing pkgconf-0:2.3.0-1. 100% | 43.7 MiB/s | 89.5 KiB | 00m00s [104/155] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s [105/155] Installing keyutils-libs-0:1. 100% | 57.7 MiB/s | 59.1 KiB | 00m00s [106/155] Installing libverto-0:0.3.2-9 100% | 29.8 MiB/s | 30.6 KiB | 00m00s [107/155] Installing jansson-0:2.13.1-1 100% | 86.9 MiB/s | 89.0 KiB | 00m00s [108/155] Installing libgomp-0:14.2.1-1 100% | 255.8 MiB/s | 523.9 KiB | 00m00s [109/155] Installing libffi-0:3.4.6-3.f 100% | 81.0 MiB/s | 82.9 KiB | 00m00s [110/155] Installing p11-kit-0:0.25.5-3 100% | 166.6 MiB/s | 2.3 MiB | 00m00s [111/155] Installing p11-kit-trust-0:0. 100% | 23.6 MiB/s | 363.2 KiB | 00m00s >>> Running post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.i686 >>> Stop post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.i686 [112/155] Installing openssl-libs-1:3.2 100% | 261.1 MiB/s | 6.3 MiB | 00m00s [113/155] Installing coreutils-0:9.5-9. 100% | 139.2 MiB/s | 5.7 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.n >>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar [114/155] Installing ca-certificates-0: 100% | 2.0 MiB/s | 2.4 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41. >>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noa [115/155] Installing krb5-libs-0:1.21.3 100% | 194.7 MiB/s | 2.3 MiB | 00m00s [116/155] Installing libarchive-0:3.7.4 100% | 243.3 MiB/s | 996.4 KiB | 00m00s [117/155] Installing libtirpc-0:1.3.5-0 100% | 105.3 MiB/s | 215.6 KiB | 00m00s [118/155] Installing gzip-0:1.13-2.fc41 100% | 128.1 MiB/s | 393.6 KiB | 00m00s [119/155] Installing authselect-libs-0: 100% | 90.8 MiB/s | 836.4 KiB | 00m00s [120/155] Installing cracklib-0:2.9.11- 100% | 40.2 MiB/s | 247.1 KiB | 00m00s [121/155] Installing libpwquality-0:1.4 100% | 51.6 MiB/s | 423.0 KiB | 00m00s [122/155] Installing libnsl2-0:2.0.1-2. 100% | 56.9 MiB/s | 58.3 KiB | 00m00s [123/155] Installing pam-0:1.6.1-6.fc42 100% | 78.7 MiB/s | 1.8 MiB | 00m00s [124/155] Installing libssh-0:0.11.1-1. 100% | 199.8 MiB/s | 613.7 KiB | 00m00s [125/155] Installing rpm-sequoia-0:1.7. 100% | 291.8 MiB/s | 2.6 MiB | 00m00s [126/155] Installing rpm-libs-0:4.19.93 100% | 249.5 MiB/s | 766.4 KiB | 00m00s [127/155] Installing rpm-build-libs-0:4 100% | 205.3 MiB/s | 210.2 KiB | 00m00s [128/155] Installing libevent-0:2.1.12- 100% | 233.4 MiB/s | 955.9 KiB | 00m00s [129/155] Installing xxhash-libs-0:0.8. 100% | 114.5 MiB/s | 117.3 KiB | 00m00s [130/155] Installing libbrotli-0:1.1.0- 100% | 210.4 MiB/s | 861.8 KiB | 00m00s [131/155] Installing libnghttp2-0:1.63. 100% | 170.5 MiB/s | 174.6 KiB | 00m00s [132/155] Installing libtool-ltdl-0:2.4 100% | 68.9 MiB/s | 70.6 KiB | 00m00s [133/155] Installing openldap-0:2.6.8-5 100% | 166.4 MiB/s | 681.5 KiB | 00m00s [134/155] Installing libcurl-0:8.9.1-3. 100% | 206.8 MiB/s | 847.2 KiB | 00m00s [135/155] Installing elfutils-debuginfo 100% | 28.0 MiB/s | 57.3 KiB | 00m00s [136/155] Installing binutils-0:2.43.1- 100% | 264.9 MiB/s | 25.4 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.43.1-1.fc42.i686 >>> Stop post-install scriptlet: binutils-0:2.43.1-1.fc42.i686 [137/155] Installing elfutils-0:0.191-8 100% | 230.9 MiB/s | 2.5 MiB | 00m00s [138/155] Installing gdb-minimal-0:15.1 100% | 316.2 MiB/s | 13.6 MiB | 00m00s [139/155] Installing debugedit-0:5.0-17 100% | 95.5 MiB/s | 195.6 KiB | 00m00s [140/155] Installing curl-0:8.9.1-3.fc4 100% | 34.0 MiB/s | 801.9 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.93-1.fc42.i686 >>> Stop pre-install scriptlet: rpm-0:4.19.93-1.fc42.i686 [141/155] Installing rpm-0:4.19.93-1.fc 100% | 95.4 MiB/s | 2.5 MiB | 00m00s [142/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [143/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [144/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [145/155] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.4 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [148/155] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [149/155] Installing redhat-rpm-config- 100% | 62.8 MiB/s | 192.9 KiB | 00m00s [150/155] Installing rpm-build-0:4.19.9 100% | 36.5 MiB/s | 186.8 KiB | 00m00s [151/155] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [152/155] Installing util-linux-0:2.40. 100% | 84.7 MiB/s | 3.6 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-8.fc42.i686 >>> Stop post-install scriptlet: util-linux-0:2.40.2-8.fc42.i686 [153/155] Installing authselect-0:1.5.0 100% | 40.3 MiB/s | 165.0 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 39.6 MiB/s | 81.1 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [155/155] Installing info-0:7.1-3.fc41. 100% | 230.1 KiB/s | 360.8 KiB | 00m02s >>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.i686 >>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.i686 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.i686 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.i686 >>> Running post-transaction scriptlet: rpm-0:4.19.93-1.fc42.i686 >>> Stop post-transaction scriptlet: rpm-0:4.19.93-1.fc42.i686 >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.i686 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.i686 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.i686 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.i686 Complete! Warning: skipped PGP checks for 153 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.i686 alternatives-1.30-1.fc41.i686 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.i686 authselect-1.5.0-7.fc41.i686 authselect-libs-1.5.0-7.fc41.i686 basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.i686 binutils-2.43.1-1.fc42.i686 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.i686 bzip2-libs-1.0.8-19.fc41.i686 ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch coreutils-9.5-9.fc42.i686 coreutils-common-9.5-9.fc42.i686 cpio-2.15-2.fc41.i686 cracklib-2.9.11-6.fc41.i686 crypto-policies-20240828-1.git5f66e81.fc42.noarch curl-8.9.1-3.fc42.i686 cyrus-sasl-lib-2.1.28-27.fc41.i686 debugedit-5.0-17.fc41.i686 diffutils-3.10-8.fc41.i686 dwz-0.15-7.fc41.i686 ed-1.20.2-2.fc41.i686 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.i686 elfutils-debuginfod-client-0.191-8.fc41.i686 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.i686 elfutils-libs-0.191-8.fc41.i686 fedora-gpg-keys-42-0.1.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.1.noarch fedora-repos-rawhide-42-0.1.noarch file-5.45-7.fc41.i686 file-libs-5.45-7.fc41.i686 filesystem-3.18-23.fc41.i686 findutils-4.10.0-4.fc41.i686 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.i686 gdb-minimal-15.1-1.fc42.i686 gdbm-1.23-7.fc41.i686 gdbm-libs-1.23-7.fc41.i686 ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40-3.fc41.i686 glibc-common-2.40-3.fc41.i686 glibc-gconv-extra-2.40-3.fc41.i686 glibc-minimal-langpack-2.40-3.fc41.i686 gmp-6.3.0-2.fc41.i686 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch grep-3.11-9.fc41.i686 gzip-1.13-2.fc41.i686 info-7.1-3.fc41.i686 jansson-2.13.1-10.fc41.i686 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.i686 krb5-libs-1.21.3-2.fc41.i686 libacl-2.3.2-2.fc41.i686 libarchive-3.7.4-3.fc41.i686 libattr-2.5.2-4.fc41.i686 libblkid-2.40.2-8.fc42.i686 libbrotli-1.1.0-5.fc41.i686 libcap-2.70-4.fc41.i686 libcap-ng-0.8.5-3.fc41.i686 libcom_err-1.47.1-3.fc41.i686 libcurl-8.9.1-3.fc42.i686 libeconf-0.6.2-3.fc41.i686 libevent-2.1.12-14.fc41.i686 libfdisk-2.40.2-8.fc42.i686 libffi-3.4.6-3.fc42.i686 libgcc-14.2.1-1.fc42.i686 libgomp-14.2.1-1.fc42.i686 libidn2-2.3.7-2.fc41.i686 libmount-2.40.2-8.fc42.i686 libnghttp2-1.63.0-1.fc42.i686 libnsl2-2.0.1-2.fc41.i686 libpkgconf-2.3.0-1.fc42.i686 libpsl-0.21.5-4.fc41.i686 libpwquality-1.4.5-11.fc41.i686 libselinux-3.7-5.fc41.i686 libsemanage-3.7-2.fc41.i686 libsepol-3.7-2.fc41.i686 libsmartcols-2.40.2-8.fc42.i686 libssh-0.11.1-1.fc42.i686 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-1.fc42.i686 libtasn1-4.19.0-9.fc41.i686 libtirpc-1.3.5-0.fc41.i686 libtool-ltdl-2.4.7-12.fc41.i686 libunistring-1.1-8.fc41.i686 libuuid-2.40.2-8.fc42.i686 libverto-0.3.2-9.fc41.i686 libxcrypt-4.4.36-7.fc41.i686 libxml2-2.12.8-2.fc41.i686 libzstd-1.5.6-2.fc41.i686 lua-libs-5.4.6-6.fc41.i686 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.i686 mpfr-4.2.1-5.fc41.i686 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.i686 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.i686 openssl-libs-3.2.2-5.fc41.i686 p11-kit-0.25.5-3.fc41.i686 p11-kit-trust-0.25.5-3.fc41.i686 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-6.fc42.i686 pam-libs-1.6.1-6.fc42.i686 patch-2.7.6-25.fc41.i686 pcre2-10.44-1.fc41.1.i686 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.i686 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.i686 popt-1.19-7.fc41.i686 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.14.0-1.fc41.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.14-3.fc41.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-11.fc42.i686 redhat-rpm-config-294-1.fc42.noarch rpm-4.19.93-1.fc42.i686 rpm-build-4.19.93-1.fc42.i686 rpm-build-libs-4.19.93-1.fc42.i686 rpm-libs-4.19.93-1.fc42.i686 rpm-sequoia-1.7.0-2.fc41.i686 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.i686 setup-2.15.0-5.fc41.noarch shadow-utils-4.15.1-9.fc41.i686 sqlite-libs-3.46.0-4.fc41.i686 systemd-libs-256.5-1.fc42.i686 tar-1.35-4.fc41.i686 unzip-6.0-64.fc41.i686 util-linux-2.40.2-8.fc42.i686 util-linux-core-2.40.2-8.fc42.i686 which-2.21-42.fc41.i686 xxhash-libs-0.8.2-3.fc41.i686 xz-5.6.2-2.fc41.i686 xz-libs-5.6.2-2.fc41.i686 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.i686 zlib-ng-compat-2.1.7-2.fc41.i686 zstd-1.5.6-2.fc41.i686 Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1725408000 Wrote: /builddir/build/SRPMS/pymol-2.5.0-13.fc42.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-i686-1725482711.328960/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1725482711.328960/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-7zcx8oel/pymol/pymol.spec) Config(child) 0 minutes 30 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/pymol-2.5.0-13.fc42.src.rpm) Config(fedora-rawhide-i686) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1725482711.328960/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1725482711.328960/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1725482711.328960/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-6.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.5.0-2.fc41.x86_64 dnf5-plugins-5.2.5.0-2.fc41.x86_64 Finish: chroot init Start: build phase for pymol-2.5.0-13.fc42.src.rpm Start: build setup for pymol-2.5.0-13.fc42.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1725408000 Wrote: /builddir/build/SRPMS/pymol-2.5.0-13.fc42.src.rpm Updating and loading repositories: Copr repository 100% | 46.5 KiB/s | 1.5 KiB | 00m00s local 100% | 99.9 KiB/s | 3.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 75.0 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: catch-devel i686 3.7.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 964.9 KiB desktop-file-utils i686 0.27-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 206.2 KiB freeglut-devel i686 3.6.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB freetype-devel i686 2.13.2-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.8 MiB gcc-c++ i686 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38.9 MiB glew-devel i686 2.2.0-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB glm-devel noarch 1.0.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB libappstream-glib i686 0.8.3-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB libpng-devel i686 2:1.6.40-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 875.9 KiB libxml2-devel i686 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 552.0 KiB vulkan-loader-devel i686 1.3.290.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.8 KiB xcb-util i686 0.4.1-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 25.7 KiB xcb-util-image i686 0.4.1-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21.5 KiB xcb-util-keysyms i686 0.4.1-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 16.1 KiB xcb-util-renderutil i686 0.3.10-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 23.7 KiB xcb-util-wm i686 0.4.2-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 92.0 KiB xkeyboard-config noarch 2.42-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.5 MiB xml-common noarch 0.6.3-65.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB xorg-x11-proto-devel noarch 2024.1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB xz-devel i686 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 255.6 KiB zlib-ng-compat-devel i686 2.1.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.7 KiB Transaction Summary: Installing: 330 packages Total size of inbound packages is 290 MiB. Need to download 290 MiB. After this operation 1 GiB will be used (install 1 GiB, remove 0 B). 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gettext-0:0.22.5-6.fc41.i686 100% | 19.3 MiB/s | 1.1 MiB | 00m00s [298/330] jsoncpp-0:1.9.5-8.fc41.i686 100% | 5.1 MiB/s | 109.1 KiB | 00m00s [299/330] rhash-0:1.4.4-2.fc41.i686 100% | 9.4 MiB/s | 211.9 KiB | 00m00s [300/330] libuv-1:1.48.0-2.fc41.i686 100% | 8.0 MiB/s | 262.3 KiB | 00m00s [301/330] perl-Term-ANSIColor-0:5.01-51 100% | 2.9 MiB/s | 47.7 KiB | 00m00s [302/330] perl-Term-Cap-0:1.18-511.fc41 100% | 1.3 MiB/s | 22.1 KiB | 00m00s [303/330] cmake-data-0:3.28.3-7.fc41.no 100% | 20.7 MiB/s | 1.8 MiB | 00m00s [304/330] perl-Pod-Escapes-1:1.07-511.f 100% | 1.1 MiB/s | 19.8 KiB | 00m00s [305/330] ncurses-0:6.5-2.20240629.fc41 100% | 14.2 MiB/s | 421.3 KiB | 00m00s [306/330] perl-Text-Tabs+Wrap-0:2024.00 100% | 1.2 MiB/s | 21.9 KiB | 00m00s [307/330] perl-if-0:0.61.000-511.fc41.n 100% | 775.7 KiB/s | 14.0 KiB | 00m00s [308/330] perl-locale-0:1.12-511.fc41.n 100% | 848.8 KiB/s | 13.6 KiB | 00m00s [309/330] perl-IO-Socket-IP-0:0.42-512. 100% | 2.4 MiB/s | 41.8 KiB | 00m00s [310/330] perl-AutoLoader-0:5.74-511.fc 100% | 1.2 MiB/s | 21.2 KiB | 00m00s [311/330] perl-URI-0:5.28-2.fc41.noarch 100% | 6.9 MiB/s | 120.1 KiB | 00m00s [312/330] libXft-0:2.3.8-7.fc41.i686 100% | 4.0 MiB/s | 73.3 KiB | 00m00s [313/330] fribidi-0:1.0.15-2.fc41.i686 100% | 4.8 MiB/s | 92.9 KiB | 00m00s [314/330] libthai-0:0.1.29-9.fc41.i686 100% | 10.4 MiB/s | 212.6 KiB | 00m00s [315/330] libdatrie-0:0.2.13-10.fc41.i6 100% | 1.7 MiB/s | 32.9 KiB | 00m00s [316/330] gettext-runtime-0:0.22.5-6.fc 100% | 5.8 MiB/s | 113.1 KiB | 00m00s [317/330] libtextstyle-0:0.22.5-6.fc41. 100% | 4.8 MiB/s | 93.3 KiB | 00m00s [318/330] gettext-libs-0:0.22.5-6.fc41. 100% | 14.5 MiB/s | 682.7 KiB | 00m00s [319/330] dbus-common-1:1.14.10-4.fc41. 100% | 814.5 KiB/s | 14.7 KiB | 00m00s [320/330] vim-filesystem-2:9.1.703-1.fc 100% | 993.9 KiB/s | 16.9 KiB | 00m00s [321/330] perl-libnet-0:3.15-512.fc41.n 100% | 7.1 MiB/s | 123.0 KiB | 00m00s [322/330] perl-Data-Dumper-0:2.189-512. 100% | 2.8 MiB/s | 58.2 KiB | 00m00s 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annobin-plugin-gcc 100% | 41.9 MiB/s | 986.3 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch [328/332] Installing gcc-plugin-annobin 100% | 2.3 MiB/s | 61.4 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch [329/332] Installing python3-numpy-1:1. 100% | 241.0 MiB/s | 36.9 MiB | 00m00s [330/332] Installing python3-simplejson 100% | 80.2 MiB/s | 493.0 KiB | 00m00s [331/332] Installing libappstream-glib- 100% | 155.6 MiB/s | 1.4 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [332/332] Installing desktop-file-utils 100% | 289.9 KiB/s | 209.9 KiB | 00m01s >>> Running post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.i686 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.i686 >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.i686 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.i686 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.i686 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.i686 >>> Running trigger-install scriptlet: glib2-0:2.82.0-1.fc42.i686 >>> Stop trigger-install scriptlet: glib2-0:2.82.0-1.fc42.i686 >>> Running trigger-install scriptlet: glib2-0:2.82.0-1.fc42.i686 >>> Stop trigger-install scriptlet: glib2-0:2.82.0-1.fc42.i686 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.i686 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.i686 >>> Running trigger-install scriptlet: shared-mime-info-0:2.3-6.fc41.i686 >>> Stop trigger-install scriptlet: shared-mime-info-0:2.3-6.fc41.i686 >>> Running trigger-install scriptlet: desktop-file-utils-0:0.27-2.fc41.i686 >>> Stop trigger-install scriptlet: desktop-file-utils-0:0.27-2.fc41.i686 Complete! Warning: skipped PGP checks for 330 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: build setup for pymol-2.5.0-13.fc42.src.rpm Start: rpmbuild pymol-2.5.0-13.fc42.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1725408000 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.Oy7fA1 + umask 022 + cd /builddir/build/BUILD/pymol-2.5.0-build + test -d /builddir/build/BUILD/pymol-2.5.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/pymol-2.5.0-build + /usr/bin/rm -rf /builddir/build/BUILD/pymol-2.5.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/pymol-2.5.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/pymol-2.5.0-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.5Fouj9 + umask 022 + cd /builddir/build/BUILD/pymol-2.5.0-build + cd /builddir/build/BUILD/pymol-2.5.0-build + rm -rf pymol-open-source-2.5.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pymol-open-source-2.5.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pymol-open-source-2.5.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-setup.py.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-wmclass-main.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-wmclass-pmgapp.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-mmtf.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-2.5.0-bug186.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + ln -sr modules/web modules/pymol_web + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.J4USEv + umask 022 + cd /builddir/build/BUILD/pymol-2.5.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pymol-open-source-2.5.0 + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection' ++ /usr/bin/getconf _NPROCESSORS_ONLN + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' --use-msgpackc=c++11 --use-openmp=yes --jobs 2 In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79: contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_fread’: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=] 435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size); | ~~^ ~~ | | | | long int fio_size_t {aka long long int} | %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=] 435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size); | ~~^ ~~~~ | | | | long int fio_size_t {aka long long int} | %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_fwrite’: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=] 560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", | ~~^ | | | long int | %lld 561 | rc, size, szleft, writecalls); | ~~ | | | fio_size_t {aka long long int} contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=] 560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", | ~~^ | | | long int | %lld 561 | rc, size, szleft, writecalls); | ~~~~ | | | fio_size_t {aka long long int} contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=] 560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", | ~~^ | | | long int | %lld 561 | rc, size, szleft, writecalls); | ~~~~~~ | | | fio_size_t {aka long long int} In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function] 459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) { | ^~~~~~~~~ contrib/mmtf-c/mmtf_parser.cpp: In function ‘bool MMTF_unpack_from_file(const char*, MMTF_container*)’: contrib/mmtf-c/mmtf_parser.cpp:1075:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1075 | fread(buffer, fileLen, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘int {anonymous}::write_structure(void*, int, const molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable ‘last_ctnumber’ [-Wunused-variable] 1904 | int last_ctnumber = -1; | ^~~~~~~~~~~~~ contrib/mmtf-c/mmtf_parser.cpp: In function ‘MMTF_parser_fetch_typed_array(msgpack::v2::object const*, unsigned int*, int)’: contrib/mmtf-c/mmtf_parser.cpp:869:5: warning: ‘typecheck’ may be used uninitialized [-Wmaybe-uninitialized] 869 | if (typecode != typecheck) { | ^~ contrib/mmtf-c/mmtf_parser.cpp:864:9: note: ‘typecheck’ was declared here 864 | int typecheck; | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerInitAll’: contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 271 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS); | ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 273 | if(ok) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerFreeAll’: contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 411 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS); | ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 413 | return ok; | ^~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_readline’: contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 279 | for (i = 0; i < strlen(line); ++i) { | ^ contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘(anonymous namespace)::read_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1786:22: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation] 1786 | strncpy( ct.particles[to].type, v->second.funct.c_str(), | ^ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘DEN_read_volumetric_data’: contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 970 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 971 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘POT_read_volumetric_data’: contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1113 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1114 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_header’: contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1511 | fread(skip, 1, 8, fp); | ^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘GEO_read_next_timestep’: contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 619 | fscanf(data->file, "%*s %f %f %f", &x, &y, &z); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In member function ‘(anonymous namespace)::AtomArray::insert_row(std::vector, std::allocator >, std::allocator, std::allocator > > > const&)’: contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:886:16: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation] 886 | strncpy( a.name, | ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 545 | for (i=0; ifile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 252 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_bonds_aux(void*, int*, int**, int**, float**)’: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 328 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 346 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 355 | fgets(nextline, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 419 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 194 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 203 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘void* open_bgf_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 59 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘read_bgf_timestep(void*, int, molfile_timestep_t*)’: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:120:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 224 [-Wstringop-truncation] 120 | strncpy(numstr, record + 31, 10); | ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:125:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 214 [-Wstringop-truncation] 125 | strncpy(numstr+10, record + 41, 10); | ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:130:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 204 [-Wstringop-truncation] 130 | strncpy(numstr+20, record + 51, 10); | ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘read_bgf_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:144:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 242 [-Wstringop-truncation] 144 | strncpy(name, record + 13, 5); | ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:149:10: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 236 [-Wstringop-truncation] 149 | strncpy(resname, record + 19, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:167:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 194 [-Wstringop-truncation] 167 | strncpy(type, record+61, 5); | ^ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function ‘open_binpos_read’: contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 64 | fread(magicchar,sizeof(char),4,fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 72 | fread(&igarb,sizeof(int),1,fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘int read_brix_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread(brick, sizeof(char), 512, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘void* open_brix_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 79 | fscanf(fd, "%3s", keyWord); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 93 | fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 100 | fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 109 | fscanf(fd, " %s %f %f %f %f %f %f", keyWord, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 | &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 123 | fscanf(fd, " %s %f", keyWord, &prod); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 128 | fscanf(fd, " %s %f", keyWord, &plus); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 135 | fscanf(fd, " %s %f", keyWord, &sigma); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_timestep’: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 326 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 339 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 344 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 349 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 363 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 266 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 268 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 272 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 295 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 305 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘open_car_read’: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 169 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 179 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 182 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 210 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 213 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 224 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 226 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 230 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 245 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] 127 | sprintf(atom->resname, "%d", resid); | ^~ In function ‘read_car_structure_line’, inlined from ‘read_car_structure’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999] 127 | sprintf(atom->resname, "%d", resid); | ^~~~ In file included from /usr/include/stdio.h:970, from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85: In function ‘sprintf’, inlined from ‘read_car_structure_line’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:5, inlined from ‘read_car_structure’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 2 and 12 bytes into a destination of size 8 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘int read_ccp4_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:495:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 495 | if ( fread(rowdata, sizeof(char), extent[0], fd) != extent[0] ) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:525:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 525 | if ( fread(rowdata, sizeof(unsigned char), extent[0], fd) != extent[0] ) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:556:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 556 | if (fread(rowdata, sizeof(float), extent[0], fd) != extent[0] ) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:588:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 588 | if (fread(rowdata, sizeof(short), extent[0], fd) != extent[0] ) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:623:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 623 | if (fread(rowdata, sizeof(unsigned short), extent[0], fd) != extent[0] ) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:655:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 655 | if ( fread(rowdata, sizeof(uchar3), extent[0], fd) != extent[0] ) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘void* open_ccp4_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 304 | fgets(symData, 81, fd); | ~~~~~^~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:42: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function] 124 | static void swap8_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘open_ccp4_read(char const*, char const*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:279:3: warning: ‘dataOffset’ may be used uninitialized [-Wmaybe-uninitialized] 279 | if (dataOffset != (CCP4HDSIZE + symBytes)) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:89:8: note: ‘dataOffset’ was declared here 89 | long dataOffset, filesize; | ^~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘void* open_cube_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 175 | fgets(readbuf, 1023, cube->fd); // go on to next line | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 181 | fgets(readbuf, 1023, cube->fd); // skip second header line | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 326 | fgets(readbuf, 1023, cube->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 337 | fgets(readbuf, 1023, cube->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 339 | fscanf(cube->fd, "%d", &cube->nsets); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 344 | fscanf(cube->fd, "%d", &orb); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 349 | fgets(readbuf, 1023, cube->fd); // gobble up rest of line | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: At global scope: contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:107:13: warning: ‘void cube_buildrotmat(cube_t*, float*, float*, float*)’ defined but not used [-Wunused-function] 107 | static void cube_buildrotmat(cube_t *cube, float *o, float *a, float *b) | ^~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:42: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘int get_pte_idx_from_string(const char*)’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘int get_pte_idx(const char*)’ defined but not used [-Wunused-function] 133 | static int get_pte_idx(const char *label) | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘open_cube_read(char const*, char const*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:179:10: warning: ‘__strncat_chk’ output may be truncated copying 240 bytes from a string of length 1023 [-Wstringop-truncation] 179 | strncat(voltmpl.dataname, readbuf, 240); // 240 is max space left after | ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51: contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_fread’: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=] 435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size); | ~~^ ~~ | | | | long int fio_size_t {aka long long int} | %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=] 435 | printf("fio_fread(): rc %ld sz: %ld\n", rc, size); | ~~^ ~~~~ | | | | long int fio_size_t {aka long long int} | %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_fwrite’: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=] 560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", | ~~^ | | | long int | %lld 561 | rc, size, szleft, writecalls); | ~~ | | | fio_size_t {aka long long int} contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=] 560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", | ~~^ | | | long int | %lld 561 | rc, size, szleft, writecalls); | ~~~~ | | | fio_size_t {aka long long int} contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=] 560 | printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", | ~~^ | | | long int | %lld 561 | rc, size, szleft, writecalls); | ~~~~~~ | | | fio_size_t {aka long long int} contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdheader’: contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 191 | } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 204 | if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 222 | if (input_integer[0] != dcdcordmagic) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 399 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 416 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdstep’: contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 621 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 625 | if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable ‘readlen’ set but not used [-Wunused-but-set-variable] 546 | fio_size_t readlen; /* number of bytes actually read */ | ^~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function] 609 | static int fio_write_str(fio_fd fd, const char *str) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function] 605 | static int fio_read_int32(fio_fd fd, int *i) { | ^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function] 459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) { | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)’: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 278 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 297 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 319 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 357 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 223 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 241 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘void* open_mdf_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 164 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 176 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 183 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_timestep(void*, int, molfile_timestep_t*)’: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 275 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 289 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_bonds_aux(void*, int*, int**, int**, float**)’: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 209 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 127 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 138 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘void* open_mol2_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 74 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 81 | fgets(line, LINESIZE, fd); // Read and ignore the mol_name | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 82 | fgets(line, LINESIZE, fd); // Read the molecule info | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 91 | fgets(line, LINESIZE, fd); // Read and ignore the mol_type | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 92 | fgets(line, LINESIZE, fd); // Read the charge_type | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’: contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 292 | if (NULL == fgets(fbuffer, 1024, data->file)) | ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 295 | if (NULL == fgets(fbuffer, 1024, data->file)) | ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_timestep’: contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 669 | fgets(fbuffer, 1024, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_timestep’: contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 554 | fgets(fbuffer, 1024, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’: contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation] 362 | strncpy(atom->name, buf, sizeof(atom->name)); | ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 545 | for (i=0; ifile, " Ene= %f\n", &orbenergy); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1166 | fscanf(data->file, " Spin= %s\n", spin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1167 | fscanf(data->file, " Occup= %f\n", &occu); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 840 | fgets(readbuf, 1024, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘open_molden_read’: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 224 | fscanf(data->file, "%d", &natm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function] 1097 | static void whereami(FILE *file) { | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function] 1077 | static void thisline(FILE *file) { | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function] 1006 | static int have_keyline(FILE *file, const char *keystring1, | ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function] 711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms, | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function] 585 | static void print_matrix4(const float mat[16]) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function] 507 | static void del_wavefunction(qm_timestep_t *ts) { | ^~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function] 490 | static void replace_wavefunction(qm_timestep_t *ts, int n) { | ^~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function] 133 | static int get_pte_idx(const char *label) | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function] 109 | static float get_pte_vdw_radius(const int idx) | ^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function] 102 | static float get_pte_mass(const int idx) | ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function] 95 | static const char *get_pte_label(const int idx) | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_structure’: contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation] 267 | strncpy(atom->name, buf, sizeof(atom->name)); | ^ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘int read_dsn6_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 233 | fread(brick, sizeof(char), 512, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘void* open_dsn6_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 91 | fread(fileHeader, sizeof(short), 19, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:63: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function] 124 | static void swap8_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function] 110 | static void swap4_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_structure’: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 350 | strncpy(atom->type, atname, sizeof(atom->type)); | ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 351 | strncpy(atom->name, atname, sizeof(atom->name)); | ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 317 | strncpy(atom->name, atname, sizeof(atom->name)); | ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation] 326 | strncpy(data->atoms[i].type, atname, sizeof(data->atoms[i].type)); | ^ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’: contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 91 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 116 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 132 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 149 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 161 | fgets(line, 80, infile); //one more read to keep us in sync | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 170 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 217 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 256 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘read_next_timestep’: contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable ‘numatoms’ set but not used [-Wunused-but-set-variable] 103 | int i, numatoms; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘write_timestep’: contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:206:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 206 | if (fwrite(tmp, sizeof(double), 3*n, namdbin->fd) != 3*n) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘open_namdbin_read’: contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 78 | fread(&filen, sizeof(namdbin_int32), 1, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:71: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function] 124 | static void swap8_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function] 110 | static void swap4_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:70: contrib/uiuc/plugins/molfile_plugin/src/vmddir.h:145:12: warning: ‘int vmd_file_is_executable(const char*)’ defined but not used [-Wunused-function] 145 | static int vmd_file_is_executable(const char * filename) { | ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_structure’: contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 730 | if (len > sizeof(name)) { | ^ contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_timestep’: contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 1060 | for (i=0; i<(3 * mmtk->atom_numberdim); i++) { | ^ contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function ‘int read_parm7_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 78 | fgets(buf, 85, file); | ~~~~~^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 204 | fgets(buf, 85, file); | ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 257 | fgets(buf, 85, file); | ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_resnames(const char*, int, char*, FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 275 | fgets(buf, 85, file); | ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 289 | fscanf(file, " %d", &cur); | ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘parmstruct* read_parm7_header(FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 368 | fgets(sdum, 512, file); | ~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 371 | fscanf(file, "%s\n", sdum); // "%FLAG" | ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 378 | fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE" | ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 385 | fscanf(file, "%s\n", sdum); // "FORMAT (20a4)" | ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 399 | fgets(prm->title, sizeof(prm->title), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 427 | fgets(sdum, sizeof(sdum), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 439 | fscanf(file,parm7, | ~~~~~~^~~~~~~~~~~~ 440 | &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 | &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 | &prm->Jparm, &prm->Nparm); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 443 | fscanf(file, parm7, | ~~~~~~^~~~~~~~~~~~~ 444 | &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 | &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 | &prm->Natyp, &prm->Nphb); | ~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 447 | fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 | &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 | &prm->IfBox, &prm->Nmxrs, &prm->IfCap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 451 | fscanf(file,"%8d",&prm->Numextra); //BB | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int read_parm7_flag(FILE*, const char*, const char*)’: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 79 | fscanf(file, "%s\n", buf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 87 | fscanf(file, "%s\n", buf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 97 | fscanf(file, "%s\n", buf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘read_parm7_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:277:12: warning: ‘__strncpy_chk’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation] 277 | strncpy(resnames, buf+4*j, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:259:12: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation] 259 | strncpy(atom->type, buf+4*j, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:206:12: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation] 206 | strncpy(atom->name, buf+4*j, 4); | ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function ‘int {anonymous}::ReadPARM::readparm(FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 435 | fscanf(file, " " DBLFMT, &prm->Charges[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 444 | fscanf(file, " " DBLFMT, &prm->Masses[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 510 | fscanf(file, " " DBLFMT, &prm->Rk[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(file, " " DBLFMT, &prm->Req[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 524 | fscanf(file, " " DBLFMT, &prm->Tk[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 531 | fscanf(file, " " DBLFMT, &prm->Teq[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 538 | fscanf(file, " " DBLFMT, &prm->Pk[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 545 | fscanf(file, " " DBLFMT, &prm->Pn[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 552 | fscanf(file, " " DBLFMT, &prm->Phase[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 559 | fscanf(file, " " DBLFMT, &prm->Solty[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 567 | fscanf(file, " " DBLFMT, &prm->Cn1[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 575 | fscanf(file, " " DBLFMT, &prm->Cn2[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 756 | fscanf(file, " " DBLFMT, &prm->HB12[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 763 | fscanf(file, " " DBLFMT, &prm->HB6[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 771 | fscanf(file, " " DBLFMT, &H[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 853 | fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 | &prm->Box[0], &prm->Box[1], &prm->Box[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 867 | fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 | &prm->Natcap, &prm->Cutcap, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 | &prm->Xcap, &prm->Ycap, &prm->Zcap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp:53: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function] 133 | static int get_pte_idx(const char *label) | ^~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31: contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘read_next_timestep’: contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:119:3: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 82 [-Wstringop-truncation] 119 | strncpy(tmp, record, PDB_RECORD_LENGTH); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation] 144 | strncpy(numstr, record + 30, 8); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation] 149 | strncpy(numstr+10, record + 38, 8); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation] 154 | strncpy(numstr+20, record + 46, 8); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation] 159 | strncpy(numstr+30, record + 54, 6); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation] 164 | strncpy(numstr+40, record + 60, 6); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘open_pdb_read’: contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation] 190 | strncpy(date, record + 50, 9); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation] 200 | strncpy(pdbcode, record + 62, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘read_pdb_structure’: contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation] 299 | strncpy(name, record + 12, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3: warning: ‘strncpy’ output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation] 304 | strncpy(altloc, record + 16, 1); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation] 308 | strncpy(resname, record + 17, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation] 317 | strncpy(resid, record + 22, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation] 159 | strncpy(numstr+30, record + 54, 6); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation] 164 | strncpy(numstr+40, record + 60, 6); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation] 330 | strncpy(segname, record + 72, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5: warning: ‘strncpy’ output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation] 339 | strncpy(elementsymbol, record + 76, 2); | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int getUniqueResID(char*, int)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable ‘i’ [-Wunused-variable] 443 | int i, uid; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable ‘j’ [-Wunused-variable] 484 | int i, count, atomdata, pos, idx, xyzcount, j; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable ‘oldChain’ [-Wunused-variable] 503 | char oldChain[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readAngleBonds(molfile_atom_t*, pdbxParser*)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable ‘bondTable’ [-Wunused-variable] 803 | int bondTable[32]; | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable ‘j’ [-Wunused-variable] 807 | int i, pos, j, k; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable ‘modelNum’ [-Wunused-variable] 811 | char modelNum[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable ‘atom’ [-Wunused-variable] 822 | molfile_atom_t * atom; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable ‘test’ [-Wunused-variable] 884 | int test = parser->nbonds + bnum; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readRMSDBonds(molfile_atom_t*, pdbxParser*)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable ‘bondTable’ [-Wunused-variable] 984 | int bondTable[32]; | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable ‘j’ [-Wunused-variable] 988 | int i, pos, j, k; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable ‘modelNum’ [-Wunused-variable] 991 | char modelNum[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable ‘atom’ [-Wunused-variable] 1002 | molfile_atom_t * atom; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘void* open_file_write(const char*, const char*, int)’: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable ‘fd’ [-Wunused-variable] 1409 | FILE* fd; | ^~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: At global scope: contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:313:14: warning: ‘float stringToFloat(char*)’ defined but not used [-Wunused-function] 313 | static float stringToFloat(char * str) { | ^~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:25: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘int get_pte_idx(const char*)’ defined but not used [-Wunused-function] 133 | static int get_pte_idx(const char *label) | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘const char* get_pte_label(int)’ defined but not used [-Wunused-function] 95 | static const char *get_pte_label(const int idx) | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp: In function ‘read_phi_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp:216:14: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation] 216 | strncpy(currNum, currChar, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘DDmkdir(std::__cxx11::basic_string, std::allocator > const&, unsigned int, int, int)’: contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 714 | sprintf(sub, "%03x/", i); | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:22: note: directive argument in the range [0, 2147483646] 714 | sprintf(sub, "%03x/", i); | ^~~~~~~ In file included from /usr/include/stdio.h:970, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: In function ‘sprintf’, inlined from ‘DDmkdir(std::__cxx11::basic_string, std::allocator > const&, unsigned int, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:9: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 5 and 10 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘DDmkdir(std::__cxx11::basic_string, std::allocator > const&, unsigned int, int, int)’: contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:30: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 722 | sprintf(subsub, "%03x", j); | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:29: note: directive argument in the range [0, 2147483646] 722 | sprintf(subsub, "%03x", j); | ^~~~~~ In function ‘sprintf’, inlined from ‘DDmkdir(std::__cxx11::basic_string, std::allocator > const&, unsigned int, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:13: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 4 and 9 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘int read_plt_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:143:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 143 | if ( fread(datablock, sizeof(float), ndata, fd) != ndata ) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘void* open_plt_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | fread(intHeader, sizeof(int), 5, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 82 | fread(floatHeader, sizeof(float), 6, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:42: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function] 124 | static void swap8_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void put_element_ply(PlyFile*, void*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable ‘i’ [-Wunused-variable] 459 | int i,j,k; | ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void ascii_get_element(PlyFile*, char*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable ‘i’ [-Wunused-variable] 1407 | int i,j,k; | ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable ‘i’ [-Wunused-variable] 1541 | int i,j,k; | ^ contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’: contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:107:17: warning: variable ‘vert_other’ set but not used [-Wunused-but-set-variable] 107 | PlyOtherProp *vert_other=NULL; | ^~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:108:17: warning: variable ‘face_other’ set but not used [-Wunused-but-set-variable] 108 | PlyOtherProp *face_other=NULL; | ^~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1629 | fread (&len, sizeof(int), 1, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1631 | fread (str, len, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void get_binary_item(FILE*, int, int*, unsigned int*, double*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2057 | fread (ptr, 1, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2063 | fread (ptr, 1, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2069 | fread (ptr, 2, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2075 | fread (ptr, 2, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2081 | fread (ptr, 4, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2087 | fread (ptr, 4, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2093 | fread (ptr, 4, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2099 | fread (ptr, 8, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:27: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function] 124 | static void swap8_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function] 110 | static void swap4_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘recreate_command_line’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1334 | line[0] = '\0'; | ~~~~~~~~^~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by ‘malloc’ 1333 | line = (char *) malloc (sizeof(char) * len); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘ascii_get_element(PlyFile*, char*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1520:14: warning: ‘other_data’ may be used uninitialized [-Wmaybe-uninitialized] 1520 | item = elem_data + prop->offset; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1423:9: note: ‘other_data’ was declared here 1423 | char *other_data; | ^~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1497:18: warning: ‘item’ may be used uninitialized [-Wmaybe-uninitialized] 1497 | item += item_size; | ~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1413:20: note: ‘item’ was declared here 1413 | char *elem_data,*item; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘framefile(std::__cxx11::basic_string, std::allocator > const&, unsigned int, unsigned int, int, int)’: contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:35: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 675 | sprintf(answer, "%03x/", d1); | ^ In function ‘sprintf’, inlined from ‘DDreldir(std::__cxx11::basic_string, std::allocator > const&, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:13, inlined from ‘framefile(std::__cxx11::basic_string, std::allocator > const&, unsigned int, unsigned int, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 5 and 10 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘framefile(std::__cxx11::basic_string, std::allocator > const&, unsigned int, unsigned int, int, int)’: contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:35: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] 673 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~ In function ‘DDreldir(std::__cxx11::basic_string, std::allocator > const&, int, int)’, inlined from ‘framefile(std::__cxx11::basic_string, std::allocator > const&, unsigned int, unsigned int, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23: contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:29: note: directive argument in the range [0, 2147483646] 673 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘DDreldir(std::__cxx11::basic_string, std::allocator > const&, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:13, inlined from ‘framefile(std::__cxx11::basic_string, std::allocator > const&, unsigned int, unsigned int, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 9 and 19 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘binary_get_element(PlyFile*, char*)’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1643:14: warning: ‘other_data’ may be used uninitialized [-Wmaybe-uninitialized] 1643 | item = elem_data + prop->offset; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1555:9: note: ‘other_data’ was declared here 1555 | char *other_data; | ^~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1620:18: warning: ‘item’ may be used uninitialized [-Wmaybe-uninitialized] 1620 | item += item_size; | ~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1546:9: note: ‘item’ was declared here 1546 | char *item; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘get_atom_radius’: contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] 166 | char *name, *type; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable ‘name’ set but not used [-Wunused-but-set-variable] 166 | char *name, *type; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘read_pqr_timestep’: contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 109 | strncpy(tmp, record, PQR_RECORD_LENGTH); | ^ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘read_pqr_structure’: contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation] 137 | strncpy(name, record+12, 4); name[4] = 0; | ^ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation] 138 | strncpy(resname, record+17, 4); resname[4] = 0; | ^ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3: warning: ‘strncpy’ output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation] 139 | strncpy(chain, record+21, 1); chain[1] = 0; | ^ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation] 140 | strncpy(resid, record+22, 4); resid[4] = 0; | ^ contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function ‘write_psf_structure’: contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 782 | if (strlen(atoms[i].type) > fw) { | ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30: contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: ‘fortread_4’ defined but not used [-Wunused-function] 103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) { | ^~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘fort_get_endian_reclen’ defined but not used [-Wunused-function] 55 | static int fort_get_endian_reclen(int reclen, int word0, int word1, | ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘fort_eat_recmark’ defined but not used [-Wunused-function] 36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) { | ^~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘swap8_aligned’ defined but not used [-Wunused-function] 124 | static void swap8_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘int read_edm_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fgets(readbuf, 13, edm->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘void eatline(FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 44 | fgets(readbuf, 1024, fd); // go on to next line | ~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’: contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable ‘timesteprst’ set but not used [-Wunused-but-set-variable] 48 | double timesteprst; | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 67 | fgets(title, 82, fd); | ^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 70 | fgets(line, 82, fd); | ^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function ‘void* open_fs4_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 79 | fread(&dataBegin, sizeof(int), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:48: contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: ‘void strnwscpy(char*, const char*, int)’ defined but not used [-Wunused-function] 133 | static void strnwscpy(char *target, const char *source, const int len) { | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘int fort_get_endian_reclen(int, int, int, int*, int*)’ defined but not used [-Wunused-function] 55 | static int fort_get_endian_reclen(int reclen, int word0, int word1, | ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘int fort_eat_recmark(FILE*, int)’ defined but not used [-Wunused-function] 36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) { | ^~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:47: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function] 124 | static void swap8_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 545 | for (i=0; ibasis_string, data->basis_string, | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3: warning: ‘strncpy’ output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation] 620 | strncpy(sys_data->runtitle, data->runtitle, sizeof(sys_data->runtitle)); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation] 621 | strncpy(sys_data->geometry, data->geometry, sizeof(sys_data->geometry)); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation] 622 | strncpy(sys_data->version_string, data->version_string, | ^ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’: contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 96 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 104 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 131 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 153 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 162 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 171 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_coordinates’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation] 1618 | strncpy(atm->type, atname, sizeof(atm->type)); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_runtitle’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1459:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation] 1459 | strncpy(data->runtitle,trimright(buffer),sizeof(data->runtitle)); | ^ contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c: In function ‘read_tinker_structure’: contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 103 | strncpy(atom->name, buffer, sizeof(atom->name)); | ^ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:22: warning: variable ‘o’ set but not used [-Wunused-but-set-variable] 90 | float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3]; | ^ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:28: warning: variable ‘s’ set but not used [-Wunused-but-set-variable] 90 | float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3]; | ^ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘int read_uhbd_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:254:66: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 254 | if (fread(datablock + z*xysize, sizeof(float), xysize, fd) != xysize) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 102 | fread(&headersize, sizeof(int), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:47: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function] 124 | static void swap8_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation] 1981 | strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry)); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl_firefly’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation] 1818 | strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry)); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_options’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5: warning: ‘__strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation] 1422 | strncat(data->basis_string, &data->gbasis[3], 1); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5: warning: ‘__strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation] 1411 | strncat(data->basis_string, &data->gbasis[2], 1); | ^ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_timestep’: contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 224 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_structure’: contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 174 | for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 180 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 189 | for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 194 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 204 | for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘open_vasp5xdatcar_read’: contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 72 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 77 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_proc_mem.isra.0’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5: warning: ‘strncpy’ output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation] 1279 | strncpy(data->memory,&word[2][0],sizeof(data->memory)); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5: warning: ‘strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 1272 | strncpy(data->memory,trimright(temp),sizeof(data->memory)); | ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_data’: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 282 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_metadata’: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 150 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘open_vaspchgcar_read’: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 71 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 75 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 81 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 92 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 103 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 131 | for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function] 111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data) | ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_input_structure’: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation] 1682 | strncpy(atm->type, atname, sizeof(atm->type)); | ^ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_timestep’: contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 239 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 242 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_structure’: contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 204 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘open_vaspoutcar_read’: contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:10: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 87 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘get_traj_frame.isra.0’: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation] 819 | strncpy((*atoms)[i].type, (*atoms)[indexmap[i]].type, 10); | ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_data’: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 238 | for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_metadata’: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 150 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘open_vaspparchg_read’: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 71 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 75 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 81 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 92 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 103 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 131 | for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function] 111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data) | ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘void line3(FILE*, GRASSP*)’: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 186 | fread(line3, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’: contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro ‘TRASH’ 284 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 285 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro ‘TRASH’ 291 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro ‘TRASH’ 305 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 306 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro ‘TRASH’ 307 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro ‘TRASH’ 311 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro ‘TRASH’ 313 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro ‘TRASH’ 318 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 319 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro ‘TRASH’ 320 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro ‘TRASH’ 328 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 329 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro ‘TRASH’ 330 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro ‘TRASH’ 354 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 355 | fread(vertex, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro ‘TRASH’ 356 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro ‘TRASH’ 357 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 358 | fread(access, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro ‘TRASH’ 359 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro ‘TRASH’ 360 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 361 | fread(normal, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro ‘TRASH’ 362 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro ‘TRASH’ 371 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 372 | fread(triangle, 3 * sizeof(int), ntriangles, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro ‘TRASH’ 373 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro ‘TRASH’ 374 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 375 | fread(properties, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro ‘TRASH’ 394 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 395 | fread(striangle, sizeof(short), 3 * ntriangles, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro ‘TRASH’ 396 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro ‘TRASH’ 397 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 398 | fread(properties, sizeof(float), 3 * nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:40: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function] 124 | static void swap8_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘write_vaspposcar_timestep’: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to ‘sizeof’ in ‘strncpy’ call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess] 360 | strncpy(tmptype, atom->type, sizeof(atom->type)); | ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_timestep’: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 232 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 246 | for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 249 | if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 256 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_structure’: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 195 | for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 198 | if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 203 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘open_vaspposcar_read’: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 73 | for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 87 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp:51: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function] 124 | static void swap8_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_timestep’: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 283 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_structure’: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 228 | for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 233 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 252 | for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘open_vaspxdatcar_read’: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 89 | fgets(lineptr, LINESIZE, poscar); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 92 | fgets(lineptr, LINESIZE, poscar); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 97 | fgets(lineptr, LINESIZE, poscar); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 111 | fgets(lineptr, LINESIZE, poscar); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 121 | fgets(lineptr, LINESIZE, poscar); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function ‘void* open_grid_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 84 | fread(&dataBegin, sizeof(int), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:60: contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: ‘void strnwscpy(char*, const char*, int)’ defined but not used [-Wunused-function] 133 | static void strnwscpy(char *target, const char *source, const int len) { | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘int fort_get_endian_reclen(int, int, int, int*, int*)’ defined but not used [-Wunused-function] 55 | static int fort_get_endian_reclen(int reclen, int word0, int word1, | ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘int fort_eat_recmark(FILE*, int)’ defined but not used [-Wunused-function] 36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) { | ^~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:59: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function] 124 | static void swap8_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘read_vaspxml_structure’: contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 139 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 144 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘open_vaspxml_read’: contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 92 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘int mdio_readline(md_file*, char*, int, int)’: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 426 | fgets(buf, n, mf->f); | ~~~~~^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:48: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘g96_header(md_file*, char*, int, float*) [clone .constprop.0]’: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:650:39: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 500 [-Wstringop-truncation] 650 | if (title && titlelen) strncpy(title, buf, titlelen); | ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function ‘vtf_open_file_read’: contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9: warning: ‘__strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation] 538 | strncat(msg, keyword, 200); | ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7: warning: ‘__strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation] 629 | strncat(msg, keyword, 200); | ^ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘gro_header(md_file*, char*, int, float*, int*, int)’: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1018:33: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 500 [-Wstringop-truncation] 1018 | if (title && titlelen) strncpy(title, buf, titlelen); | ^ contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp: In function ‘open_gro_read(char const*, char const*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:103:12: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 80 [-Wstringop-truncation] 103 | strncpy(gmx->meta->title, mdh.title, 80); | ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function ‘vtf_read_bonds’: contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 147 | sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n", | ^~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:276:45: warning: variable ‘total’ set but not used [-Wunused-but-set-variable] 276 | int x, y, z, xsize, ysize, zsize, xysize, total; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)’: contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:338:45: warning: variable ‘total’ set but not used [-Wunused-but-set-variable] 338 | int x, y, z, xsize, ysize, zsize, xysize, total; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 371 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’: contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 306 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:72: contrib/uiuc/plugins/include/vmdconio.h: At global scope: contrib/uiuc/plugins/include/vmdconio.h:56:12: warning: ‘int vmdcon_printf(int, const char*, ...)’ defined but not used [-Wunused-function] 56 | static int vmdcon_printf(int lvl, const char *fmt, ...) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘open_vtk_read(char const*, char const*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:152:10: warning: ‘strncpy’ output may be truncated copying 256 bytes from a string of length 2039 [-Wstringop-truncation] 152 | strncpy(vtk->title, inbuf, sizeof(vtk->title) - 1); | ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_timestep(void*, int, molfile_timestep_t*)’: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 288 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 297 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)’: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 365 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 387 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 395 | fgets(nextline, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 455 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 241 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 250 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘void* open_xbgf_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 72 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘read_xbgf_timestep(void*, int, molfile_timestep_t*)’: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:143:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 223 [-Wstringop-truncation] 143 | strncpy(numstr, record + 32, 10); | ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:148:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 213 [-Wstringop-truncation] 148 | strncpy(numstr+10, record + 42, 10); | ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:153:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 203 [-Wstringop-truncation] 153 | strncpy(numstr+20, record + 52, 10); | ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘read_xbgf_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:172:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 241 [-Wstringop-truncation] 172 | strncpy(name, record + 14, 5); | ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:177:10: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 235 [-Wstringop-truncation] 177 | strncpy(resname, record + 20, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:182:10: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 154 [-Wstringop-truncation] 182 | strncpy(segname, record + 101, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:197:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 192 [-Wstringop-truncation] 197 | strncpy(type, record+63, 5); | ^ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void eatline(FILE*)’: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 238 | fgets(readbuf, 1024, fd); // go on to next line | ~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void* open_xsf_read(const char*, const char*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 408 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 442 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 444 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 446 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 448 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 450 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 473 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 508 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:37: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘int get_pte_idx_from_string(const char*)’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘read_xsf_structure(void*, int*, molfile_atom_t*)’: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:597:20: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 597 | strncpy(atom->name, buffer, sizeof(atom->name)); | ^ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘open_xsf_read(char const*, char const*, int*)’: contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:438:22: warning: ‘strncpy’ output may be truncated copying 255 bytes from a string of length 255 [-Wstringop-truncation] 438 | strncpy(set->dataname, readbuf, 255); | ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c: In function ‘read_xyz_structure’: contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 133 | strncpy(atom->name, buffer, sizeof(atom->name)); | ^ In file included from layer0/CarveHelper.cpp:8: layer0/CarveHelper.h: In constructor ‘CarveHelper::CarveHelper(PyMOLGlobals*, float, const float*, std::size_t)’: layer0/CarveHelper.h:23:9: warning: ‘CarveHelper::m_cutoff’ will be initialized after [-Wreorder] 23 | float m_cutoff; | ^~~~~~~~ layer0/CarveHelper.h:22:16: warning: ‘const float* CarveHelper::m_vertices’ [-Wreorder] 22 | const float* m_vertices; | ^~~~~~~~~~ layer0/CarveHelper.cpp:20:1: warning: when initialized here [-Wreorder] 20 | CarveHelper::CarveHelper(PyMOLGlobals* G, float cutoff, const float* vertices, | ^~~~~~~~~~~ In file included from /usr/include/c++/14/cassert:44, from layer0/Field.h:24, from layer0/Isosurf.h:24, from layer0/ContourSurf.cpp:11: layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {unsigned int, unsigned int, unsigned int}]’: layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {unsigned int, unsigned int, unsigned int}]’ 114 | return *ptr(pos...); | ~~~~~~^~~~~~~~ layer0/ContourSurf.cpp:409:37: required from here 409 | return m_field->data->get( | ~~~~~~~~~~~~~~~~~~~~~~~~~^ 410 | x + m_offset[0], y + m_offset[1], z + m_offset[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {unsigned int, unsigned int, unsigned int, int}]’: layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {unsigned int, unsigned int, unsigned int, int}]’ 114 | return *ptr(pos...); | ~~~~~~^~~~~~~~ layer0/ContourSurf.cpp:419:36: required from here 419 | m_field->points->get(x, y, z, 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ layer0/Field.cpp: In function ‘PyObject* FieldAsNumPyArray(CField*, short int)’: layer0/Field.cpp:83:1: warning: label ‘ok_except1’ defined but not used [-Wunused-label] 83 | ok_except1: | ^~~~~~~~~~ layer0/Field.cpp: In function ‘CField* FieldNewFromPyList(PyMOLGlobals*, PyObject*)’: layer0/Field.cpp:179:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 179 | ok = ok && I->size() == size; | ~~~~~~~~~~^~~~~~~ In file included from /usr/include/c++/14/cassert:44, from layer0/Field.h:24, from layer0/Field.cpp:26: layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’: layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’ 114 | return *ptr(pos...); | ~~~~~~^~~~~~~~ layer0/Field.cpp:343:17: required from here 156 | #define Ffloat3(f, a, b, c) ((f)->get(a, b, c)) | ~~~~~~~~~~~~~~~^~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /usr/include/c++/14/cassert:44, from layer0/Field.h:24, from layer0/Isosurf.h:24, from layer0/Isosurf.cpp:25: layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’: layer0/Isosurf.cpp:552:24: required from here 158 | #define Ffloat4p(f, a, b, c, d) ((f)->ptr(a, b, c, d)) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’: layer0/Isosurf.cpp:1459:32: required from here 39 | #define O3Ptr(field,P1,P2,P3,offs) ((field)->ptr((P1)+offs[0],(P2)+offs[1],(P3)+offs[2])) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = PointType; SizeTs = {int, int, int, int}]’: layer0/Field.h:134:26: required from ‘T* CFieldTyped::ptr(SizeTs ...) [with SizeTs = {int, int, int, int}; T = PointType]’ 134 | return CField::ptr(pos...); | ~~~~~~~~~~~~~~^~~~~~~~ layer0/Isosurf.cpp:1617:19: required from here 53 | #define EdgePtPtr(field,P2,P3,P4,P5) ((field)->ptr(P2,P3,P4,P5)) | ~~~~~~~~~~~~^~~~~~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’: layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’ 114 | return *ptr(pos...); | ~~~~~~^~~~~~~~ layer0/Field.h:144:26: required from ‘T& CFieldTyped::get(SizeTs ...) [with SizeTs = {int, int, int}; T = int]’ 144 | return CField::get(pos...); | ~~~~~~~~~~~~~~^~~~~~~~ layer0/Isosurf.cpp:1456:15: required from here 43 | #define I3(field,P1,P2,P3) ((field)->get(P1,P2,P3)) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int, int}]’: layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int, int}]’ 114 | return *ptr(pos...); | ~~~~~~^~~~~~~~ layer0/Field.h:144:26: required from ‘T& CFieldTyped::get(SizeTs ...) [with SizeTs = {int, int, int, int}; T = int]’ 144 | return CField::get(pos...); | ~~~~~~~~~~~~~~^~~~~~~~ layer0/Isosurf.cpp:1487:13: required from here 45 | #define I4(field,P1,P2,P3,P4) ((field)->get(P1,P2,P3,P4)) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /usr/include/c++/14/cassert:44, from layer0/Field.h:24, from layer0/Isosurf.h:24, from layer0/Tetsurf.cpp:24: layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’: layer0/Tetsurf.cpp:802:18: required from here 37 | #define O4Ptr(field,P1,P2,P3,P4,offs) ((field)->ptr(P1+offs[0],P2+offs[1],P3+offs[2],P4)) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = PointType; SizeTs = {int, int, int, int}]’: layer0/Tetsurf.cpp:831:27: required from here 59 | #define EdgePtPtr(field,P2,P3,P4,P5) ((field)->ptr(P2,P3,P4,P5)) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’: layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’ 114 | return *ptr(pos...); | ~~~~~~^~~~~~~~ layer0/Tetsurf.cpp:791:16: required from here 39 | #define I3(field,P1,P2,P3) ((field)->get(P1,P2,P3)) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’: layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’ 114 | return *ptr(pos...); | ~~~~~~^~~~~~~~ layer0/Tetsurf.cpp:822:18: required from here 35 | #define O3(field,P1,P2,P3,offs) ((field)->get(P1+offs[0],P2+offs[1],P3+offs[2])) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ layer0/MemoryDebug.cpp: In function ‘void* VLADeleteRaw(void*, int, unsigned int)’: layer0/MemoryDebug.cpp:223:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘unsigned int’} [-Wsign-compare] 223 | if(index < -old_size) | ~~~~~~^~~~~~~~~~~ layer0/MemoryDebug.cpp:235:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘unsigned int’} [-Wsign-compare] 235 | (index < vla->size) && ((count + index) <= vla->size)) { | ~~~~~~^~~~~~~~~~~ layer0/MemoryDebug.cpp: In function ‘void* VLAInsertRaw(void*, int, unsigned int)’: layer0/MemoryDebug.cpp:256:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘unsigned int’} [-Wsign-compare] 256 | if(index < -old_size) | ~~~~~~^~~~~~~~~~~ layer0/MemoryDebug.cpp:263:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘unsigned int’} [-Wsign-compare] 263 | if(index > old_size) | ~~~~~~^~~~~~~~~~ layer0/MemoryDebug.cpp:266:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘unsigned int’} [-Wsign-compare] 266 | if((index >= 0) && (count > 0) && (index <= old_size)) { | ~~~~~~^~~~~~~~~~~ layer0/MemoryUsage.cpp: In function ‘size_t pymol::memory_usage()’: layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=] 38 | std::fscanf(fp, "%*zu%zu", &vmRSS); | ^~~~~~~~~ layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 38 | std::fscanf(fp, "%*zu%zu", &vmRSS); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ layer0/MyPNG.cpp: In function ‘int MyPNGWrite(const char*, const pymol::Image&, float, int, int, float, float, png_outbuf_t*)’: layer0/MyPNG.cpp:299:20: warning: comparison of integer expressions of different signedness: ‘png_uint_32’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 299 | for(k = 0; k < height; k++) | ~~^~~~~~~~ layer0/MyPNG.cpp:340:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 340 | for(b = 0; b < height; b++) { | ~~^~~~~~~~ layer0/MyPNG.cpp:341:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 341 | for(a = 0; a < width; a++) { | ~~^~~~~~~ In file included from include/tnt/tnt.h:49, from layer0/ccealignmodule.cpp:39: include/tnt/tnt_array2d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Array2D&)’: include/tnt/tnt_array2d_utils.h:62:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 62 | for (int i=0; i>(std::istream&, Array3D&)’: include/tnt/tnt_array3d_utils.h:47:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 47 | for (int i=0; i>(std::istream&, Fortran_Array2D&)’: include/tnt/tnt_fortran_array2d_utils.h:61:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 61 | for (int i=1; i<=M; i++) | ^~~ include/tnt/tnt_fortran_array2d_utils.h:67:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 67 | A = B; | ^ In file included from include/tnt/tnt.h:57: include/tnt/tnt_fortran_array3d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Fortran_Array3D&)’: include/tnt/tnt_fortran_array3d_utils.h:65:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 65 | for (int i=1; i<=M; i++) | ^~~ include/tnt/tnt_fortran_array3d_utils.h:70:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 70 | A = B; | ^ layer0/marching_cubes.cpp: In function ‘mc::Mesh mc::march(const Field&, float, bool)’: layer0/marching_cubes.cpp:517:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 517 | for (int z = 0; z < zDim; ++z) { | ~~^~~~~~ layer0/marching_cubes.cpp:550:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 550 | for (int z = 0; z < zEnd; ++z) { | ~~^~~~~~ layer0/marching_cubes.cpp:603:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 603 | if (z == zEnd - 1) { | ~~^~~~~~~~~~~ layer0/marching_cubes.cpp:608:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 608 | if (z == zEnd - 1) { | ~~^~~~~~~~~~~ layer0/marching_cubes.cpp: In function ‘void mc::calculateNormals(Mesh&)’: layer0/marching_cubes.cpp:681:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 681 | for (int i = 0; i < vertexCount; ++i) { | ~~^~~~~~~~~~~~~ layer0/marching_cubes.cpp:686:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 686 | for (int i = 0; i < triangleCount; ++i) { | ~~^~~~~~~~~~~~~~~ layer0/marching_cubes.cpp:720:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 720 | for (int i = 0; i < vertexCount; ++i) { | ~~^~~~~~~~~~~~~ layer1/Ortho.cpp:783:6: warning: ‘void OrthoKeyCmmd(PyMOLGlobals*, unsigned char)’ defined but not used [-Wunused-function] 783 | void OrthoKeyCmmd(PyMOLGlobals * G, unsigned char k) | ^~~~~~~~~~~~ In file included from /usr/include/string.h:548, from /usr/include/python3.13/Python.h:39, from layer0/os_python.h:34, from layer1/Ortho.cpp:24: In function ‘strcat’, inlined from ‘OrthoSpecial(PyMOLGlobals*, int, int, int, int)’ at layer1/Ortho.cpp:332:13: /usr/include/bits/string_fortified.h:140:33: warning: ‘__strcat_chk’ accessing 1073741885 or more bytes at offsets [60, 261180] and [-1073741824, 1073741823] may overlap 1 byte at offset [60, 2147483647] [-Wrestrict] 140 | return __builtin___strcat_chk (__dest, __src, __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strcat’, inlined from ‘OrthoSpecial(PyMOLGlobals*, int, int, int, int)’ at layer1/Ortho.cpp:349:13: /usr/include/bits/string_fortified.h:140:33: warning: ‘__strcat_chk’ accessing 1073741885 or more bytes at offsets [60, 261180] and [-1073741824, 1073741823] may overlap 1 byte at offset [60, 2147483647] [-Wrestrict] 140 | return __builtin___strcat_chk (__dest, __src, __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer1/ButMode.cpp:22: layer1/ButMode.cpp: In function ‘void ButModeFree(PyMOLGlobals*)’: layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CButMode’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}} layer1/ButMode.cpp:144:3: note: in expansion of macro ‘DeleteP’ 144 | DeleteP(G->ButMode); | ^~~~~~~ layer1/P.cpp: In function ‘int WrapperObjectAssignSubScript(PyObject*, PyObject*, PyObject*)’: layer1/P.cpp:825:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 825 | if (strlen(valstr) > ap->maxlen) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ layer1/P.cpp:849:18: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 849 | if (valint == -1 && PyErr_Occurred()) | ~~~~~~~^~~~~ layer1/P.cpp: In function ‘int PAutoBlock(PyMOLGlobals*)’: layer1/P.cpp:2288:27: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘long unsigned int’ [-Wsign-compare] 2288 | if (SavedThread[a].id == id) { | ~~~~~~~~~~~~~~~~~~^~~~~ layer1/P.cpp: In function ‘int PIsGlutThread()’: layer1/P.cpp:2314:39: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 2314 | return (PyThread_get_thread_ident() == P_glut_thread_id); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ layer1/P.cpp: At global scope: layer1/P.cpp:2422:13: warning: ‘void PLockAPIWhileBlocked(PyMOLGlobals*)’ defined but not used [-Wunused-function] 2422 | static void PLockAPIWhileBlocked(PyMOLGlobals * G) | ^~~~~~~~~~~~~~~~~~~~ layer1/P.cpp:2411:13: warning: ‘void PUnlockAPIWhileBlocked(PyMOLGlobals*)’ defined but not used [-Wunused-function] 2411 | static void PUnlockAPIWhileBlocked(PyMOLGlobals * G) | ^~~~~~~~~~~~~~~~~~~~~~ layer1/P.cpp: In function ‘PLabelAtomAlt(PyMOLGlobals*, AtomInfoType*, char const*, char const*, int)’: layer1/P.cpp:322:12: warning: ‘strncpy’ specified bound 1024 equals destination size [-Wstringop-truncation] 322 | strncpy(label, origexpr, OrthoLineLength); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/CGO.cpp: In function ‘void CheckAttributesForUsage(const CGO*, AttribDataDesc&, AttribDataDesc&, CGO*, bool&)’: layer1/CGO.cpp:10842:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 10842 | for (auto idx = 0; idx < attrIdx; ++idx){ | ~~~~^~~~~~~~~ layer1/CGO.cpp: In function ‘void PopulateOpsIntoStructuresForConversion(std::map&, std::map >&, AttribDataDesc&, AttribDataDesc&, int&, bool)’: layer1/CGO.cpp:10920:37: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 10920 | if (attrOp->incr_vertices != vertsperpickinfo){ | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ layer1/CGO.cpp: In function ‘CGO* CGOConvertToShader(const CGO*, AttribDataDesc&, AttribDataDesc&, int, GenericBuffer<34962>::buffer_layout, bool, int*, int, int)’: layer1/CGO.cpp:11222:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 11222 | for (auto idx = 0; idx < attrData.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~ layer1/CGO.cpp:11234:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 11234 | for (auto idx = 0; idx < attrData.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~ layer1/CGO.cpp:11243:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 11243 | for (int nxt = 0; nxt < attribOp->incr_vertices; ++nxt){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ layer1/PConv.cpp: In function ‘int PConvPyListToBitmask(PyObject*, int*, ov_size)’: layer1/PConv.cpp:83:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘unsigned int’} [-Wsign-compare] 83 | for(int i = 0; i < ll; i++) | ~~^~~~ layer1/PConv.cpp: In function ‘PyObject* PConvLabPosVecToPyList(const std::vector&)’: layer1/PConv.cpp:1194:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1194 | for (int a = 0; a < vec.size(); a++) { | ~~^~~~~~~~~~~~ In file included from layer1/Pop.cpp:22: layer1/Pop.cpp: In function ‘void PopFree(PyMOLGlobals*)’: layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CPop’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}} layer1/Pop.cpp:54:3: note: in expansion of macro ‘DeleteP’ 54 | DeleteP(G->Pop); | ^~~~~~~ layer1/Ray.cpp: In function ‘void RayRender(CRay*, unsigned int*, double, float, int, unsigned int*)’: layer1/Ray.cpp:6065:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6065 | if(x_stop > width) | ~~~~~~~^~~~~~~ layer1/Ray.cpp:6067:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6067 | if(y_stop > height) | ~~~~~~~^~~~~~~~ layer1/Ray.cpp:6148:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6148 | for(y = 0; y < height; y++) | ~~^~~~~~~~ layer1/Ray.cpp:6149:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6149 | for(x = 0; x < width; x++) { | ~~^~~~~~~ layer1/Ray.cpp:6160:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6160 | if(x < (width - 1)) { | ~~^~~~~~~~~~~~~ layer1/Ray.cpp:6171:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6171 | if(y < (height - 1)) { | ~~^~~~~~~~~~~~~~ layer1/Ray.cpp:6232:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6232 | for(y = 0; y < height; y++) | ~~^~~~~~~~ layer1/Ray.cpp:6233:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6233 | for(x = 0; x < width; x++) { | ~~^~~~~~~ layer1/Ray.cpp:6243:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6243 | if(x < (width - 1)) { | ~~^~~~~~~~~~~~~ layer1/Ray.cpp:6255:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6255 | if(y < (height - 1)) { | ~~^~~~~~~~~~~~~~ layer1/Ray.cpp:6306:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6306 | for(y = 0; y < height; y++){ | ~~^~~~~~~~ layer1/Ray.cpp:6326:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6326 | for(x = 0; x < width; x++) { | ~~^~~~~~~ layer1/Ray.cpp:6345:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6345 | if(x < (width - 1)) { | ~~^~~~~~~~~~~~~ layer1/Ray.cpp:6359:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6359 | if(y < (height - 1)) { | ~~^~~~~~~~~~~~~~ layer1/Ray.cpp:6373:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6373 | if(x && (y < (height - 1))) { | ~~^~~~~~~~~~~~~~ layer1/Ray.cpp:6380:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6380 | if(y && (x < (width - 1))) { | ~~^~~~~~~~~~~~~ layer1/Ray.cpp:6387:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6387 | if((y < (height - 1)) && (x < (width - 1))) { | ~~^~~~~~~~~~~~~~ layer1/Ray.cpp:6387:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6387 | if((y < (height - 1)) && (x < (width - 1))) { | ~~^~~~~~~~~~~~~ layer1/Ray.cpp:6543:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6543 | for(y = 0; y < height; y++) { | ~~^~~~~~~~ layer1/Ray.cpp:6544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 6544 | for(x = 0; x < width; x++) { | ~~^~~~~~~ layer1/Ray.cpp: In function ‘RayTraceThread(_CRayThreadInfo*)’: layer1/Ray.cpp:3606:39: warning: ‘hl’ may be used uninitialized [-Wmaybe-uninitialized] 3606 | compute_background_for_pixel(bkrd_uc, isOutsideInY, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 3607 | bg_image_mode, bg_image_tilesize, bg_rgb, bg_image_linear, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3608 | (unsigned char*) T->bkrd_data, T->bgWidth, T->bgHeight, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3609 | x, wr, hl, hpixelx, orig_opaque_back ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Ray.cpp:3269:9: note: ‘hl’ was declared here 3269 | float hl; | ^~ layer1/Ray.cpp: In function ‘RayRenderVRML2(_CRay*, int, int, char**, float, float, float, float, float)’: layer1/Ray.cpp:1535:20: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=] 1535 | "%s" | ^~ ...... 1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); | ~~~~~~~~ layer1/Ray.cpp:1530:18: note: ‘sprintf’ output between 116 and 2993 bytes into a destination of size 1024 1530 | sprintf(buffer, | ~~~~~~~^~~~~~~~ 1531 | "Transform {\n" | ~~~~~~~~~~~~~~~ 1532 | " translation %8.6f %8.6f %8.6f\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1533 | " rotation %8.6f %8.6f %8.6f %8.6f\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1534 | " children [\n" | ~~~~~~~~~~~~~~~ 1535 | "%s" | ~~~~ 1536 | " ]\n" | ~~~~~~ 1537 | "}\n", | ~~~~~~ 1538 | vert2[0] - mid[0], | ~~~~~~~~~~~~~~~~~~ 1539 | vert2[1] - mid[1], | ~~~~~~~~~~~~~~~~~~ 1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp: In function ‘int SceneViewEqual(float*, float*)’: layer1/Scene.cpp:127:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::size_t’ {aka ‘const unsigned int’} [-Wsign-compare] 127 | for(i = 0; i < cSceneViewSize; i++) { | ~~^~~~~~~~~~~~~~~~ layer1/Scene.cpp: In function ‘void SceneFree(PyMOLGlobals*)’: layer1/Scene.cpp:4071:3: warning: deleting object of polymorphic class type ‘CScene’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 4071 | delete G->Scene; | ^~~~~~~~~~~~~~~ layer1/SceneMouse.cpp: In function ‘void SceneClickPickBond(PyMOLGlobals*, int, int, int, const NamedPicking&)’: layer1/SceneMouse.cpp:513:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 513 | if (atIndex == LastPicked.src.index) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ layer1/Color.cpp: In function ‘ObjectGadgetRamp* ColorGetRamp(PyMOLGlobals*, int)’: layer1/Color.cpp:180:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 180 | if (index < I->Ext.size()) { | ~~~~~~^~~~~~~~~~~~~~~ layer1/Color.cpp: In function ‘int ColorExtFromPyList(PyMOLGlobals*, PyObject*, int)’: layer1/Color.cpp:501:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 501 | for (int a = 0; a < n_ext; ++a) { | ~~^~~~~~~ In file included from /usr/include/c++/14/cassert:44, from /usr/include/glm/detail/setup.hpp:3, from /usr/include/glm/detail/qualifier.hpp:3, from /usr/include/glm/detail/type_vec2.hpp:6, from /usr/include/glm/ext/vector_bool2.hpp:5, from /usr/include/glm/vec2.hpp:5, from layer0/GenericBuffer.h:12, from layer0/ShaderMgr.h:24, from layer1/Scene.h:29, from layer3/Executive.h:35, from layer1/Color.cpp:31: layer1/Color.cpp:515:18: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 515 | assert(a_new <= I->Ext.size()); | ~~~~~~^~~~~~~~~~~~~~~~ layer1/Color.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 518 | if (a_new == I->Ext.size()) { | ~~~~~~^~~~~~~~~~~~~~~~ layer1/Color.cpp: In function ‘int ColorFromPyList(PyMOLGlobals*, PyObject*, int)’: layer1/Color.cpp:569:44: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 569 | if (partial_restore && I->Color.size() > index) { | ~~~~~~~~~~~~~~~~^~~~~~~ layer1/Color.cpp:575:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 575 | if (index >= I->Color.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~~ layer1/Color.cpp:576:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 576 | assert(I->Color.size() == index); | ~~~~~~~~~~~~~~~~^~~~~~~~ layer1/Color.cpp: In function ‘int ColorGetIndex(PyMOLGlobals*, const char*)’: layer1/Color.cpp:683:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 683 | if((i < I->Color.size()) && (i >= 0)) | ~~^~~~~~~~~~~~~~~~~ layer1/Color.cpp: In function ‘const char* ColorGetName(PyMOLGlobals*, int)’: layer1/Color.cpp:764:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 764 | if((index >= 0) && (index < I->Color.size())) { | ~~~~~~^~~~~~~~~~~~~~~~~ layer1/Color.cpp:776:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 776 | if (a < I->Ext.size()) { | ~~^~~~~~~~~~~~~~~ layer1/Color.cpp: In function ‘int ColorGetStatus(PyMOLGlobals*, int)’: layer1/Color.cpp:792:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 792 | if((index >= 0) && (index < I->Color.size())) { | ~~~~~~^~~~~~~~~~~~~~~~~ layer1/Color.cpp: In function ‘void ColorReset(PyMOLGlobals*)’: layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1026:3: note: in expansion of macro ‘reg_named_color’ 1026 | reg_named_color("white", 1.F, 1.F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1027:3: note: in expansion of macro ‘reg_named_color’ 1027 | reg_named_color("black", 0.F, 0.F, 0.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1028:3: note: in expansion of macro ‘reg_named_color’ 1028 | reg_named_color("blue", 0.F, 0.F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1029:3: note: in expansion of macro ‘reg_named_color’ 1029 | reg_named_color("green", 0.F, 1.F, 0.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1030:3: note: in expansion of macro ‘reg_named_color’ 1030 | reg_named_color("red", 1.F, 0.F, 0.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1031:3: note: in expansion of macro ‘reg_named_color’ 1031 | reg_named_color("cyan", 0.F, 1.F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1032:3: note: in expansion of macro ‘reg_named_color’ 1032 | reg_named_color("yellow", 1.F, 1.F, 0.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1033:3: note: in expansion of macro ‘reg_named_color’ 1033 | reg_named_color("dash", 1.F, 1.F, 0.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1034:3: note: in expansion of macro ‘reg_named_color’ 1034 | reg_named_color("magenta", 1.F, 0.F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1035:3: note: in expansion of macro ‘reg_named_color’ 1035 | reg_named_color("salmon", 1.F, 0.6F, 0.6F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1036:3: note: in expansion of macro ‘reg_named_color’ 1036 | reg_named_color("lime", 0.5F, 1.F, 0.5F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1037:3: note: in expansion of macro ‘reg_named_color’ 1037 | reg_named_color("slate", 0.5F, 0.5F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1038:3: note: in expansion of macro ‘reg_named_color’ 1038 | reg_named_color("hotpink", 1.F, 0.F, 0.5F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1039:3: note: in expansion of macro ‘reg_named_color’ 1039 | reg_named_color("orange", 1.F, 0.5F, 0.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1040:3: note: in expansion of macro ‘reg_named_color’ 1040 | reg_named_color("chartreuse", 0.5F, 1.F, 0.F); /* AKA puke green */ | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1041:3: note: in expansion of macro ‘reg_named_color’ 1041 | reg_named_color("limegreen", 0.F, 1.F, 0.5F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1042:3: note: in expansion of macro ‘reg_named_color’ 1042 | reg_named_color("purpleblue", 0.5F, 0.F, 1.F); /* legacy name */ | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1043:3: note: in expansion of macro ‘reg_named_color’ 1043 | reg_named_color("marine", 0.F, 0.5F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1044:3: note: in expansion of macro ‘reg_named_color’ 1044 | reg_named_color("olive", 0.77F, 0.7F, 0.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1045:3: note: in expansion of macro ‘reg_named_color’ 1045 | reg_named_color("purple", 0.75F, 0.F, 0.75F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1046:3: note: in expansion of macro ‘reg_named_color’ 1046 | reg_named_color("teal", 0.F, 0.75F, 0.75F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1047:3: note: in expansion of macro ‘reg_named_color’ 1047 | reg_named_color("ruby", 0.6F, 0.2F, 0.2F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1048:3: note: in expansion of macro ‘reg_named_color’ 1048 | reg_named_color("forest", 0.2F, 0.6F, 0.2F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1049:3: note: in expansion of macro ‘reg_named_color’ 1049 | reg_named_color("deepblue", 0.25F, 0.25F, 0.65F); /* was "deep" */ | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1050:3: note: in expansion of macro ‘reg_named_color’ 1050 | reg_named_color("grey", 0.5F, 0.5F, 0.5F); /* english spelling */ | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1051:3: note: in expansion of macro ‘reg_named_color’ 1051 | reg_named_color("gray", 0.5F, 0.5F, 0.5F); /* american spelling */ | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1052:3: note: in expansion of macro ‘reg_named_color’ 1052 | reg_named_color("carbon", 0.2F, 1.F, 0.2F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1053:3: note: in expansion of macro ‘reg_named_color’ 1053 | reg_named_color("nitrogen", 0.2F, 0.2F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1054:3: note: in expansion of macro ‘reg_named_color’ 1054 | reg_named_color("oxygen", 1.F, 0.3F, 0.3F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1055:3: note: in expansion of macro ‘reg_named_color’ 1055 | reg_named_color("hydrogen", 0.9F, 0.9F, 0.9F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1056:3: note: in expansion of macro ‘reg_named_color’ 1056 | reg_named_color("brightorange", 1.F, 0.7F, 0.2F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1057:3: note: in expansion of macro ‘reg_named_color’ 1057 | reg_named_color("sulfur", 0.9F, 0.775F, 0.25F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1058:3: note: in expansion of macro ‘reg_named_color’ 1058 | reg_named_color("tv_red", 1.F, 0.2F, 0.2F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1059:3: note: in expansion of macro ‘reg_named_color’ 1059 | reg_named_color("tv_green", 0.2F, 1.F, 0.2F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1060:3: note: in expansion of macro ‘reg_named_color’ 1060 | reg_named_color("tv_blue", 0.3F, 0.3F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1061:3: note: in expansion of macro ‘reg_named_color’ 1061 | reg_named_color("tv_yellow", 1.F, 1.F, 0.2F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1062:3: note: in expansion of macro ‘reg_named_color’ 1062 | reg_named_color("yelloworange", 1.F, 0.87F, 0.37F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1063:3: note: in expansion of macro ‘reg_named_color’ 1063 | reg_named_color("tv_orange", 1.F, 0.55F, 0.15F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1064:3: note: in expansion of macro ‘reg_named_color’ 1064 | reg_named_color("br0", 0.1F, 0.1F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1065:3: note: in expansion of macro ‘reg_named_color’ 1065 | reg_named_color("br1", 0.2F, 0.1F, 0.9F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1066:3: note: in expansion of macro ‘reg_named_color’ 1066 | reg_named_color("br2", 0.3F, 0.1F, 0.8F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1067:3: note: in expansion of macro ‘reg_named_color’ 1067 | reg_named_color("br3", 0.4F, 0.1F, 0.7F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1068:3: note: in expansion of macro ‘reg_named_color’ 1068 | reg_named_color("br4", 0.5F, 0.1F, 0.6F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1069:3: note: in expansion of macro ‘reg_named_color’ 1069 | reg_named_color("br5", 0.6F, 0.1F, 0.5F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1070:3: note: in expansion of macro ‘reg_named_color’ 1070 | reg_named_color("br6", 0.7F, 0.1F, 0.4F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1071:3: note: in expansion of macro ‘reg_named_color’ 1071 | reg_named_color("br7", 0.8F, 0.1F, 0.3F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1072:3: note: in expansion of macro ‘reg_named_color’ 1072 | reg_named_color("br8", 0.9F, 0.1F, 0.2F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1073:3: note: in expansion of macro ‘reg_named_color’ 1073 | reg_named_color("br9", 1.F, 0.1F, 0.1F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1074:3: note: in expansion of macro ‘reg_named_color’ 1074 | reg_named_color("pink", 1.F, 0.65F, 0.85F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1075:3: note: in expansion of macro ‘reg_named_color’ 1075 | reg_named_color("firebrick", 0.698F, 0.13F, 0.13F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1076:3: note: in expansion of macro ‘reg_named_color’ 1076 | reg_named_color("chocolate", 0.555F, 0.222F, 0.111F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1077:3: note: in expansion of macro ‘reg_named_color’ 1077 | reg_named_color("brown", 0.65F, 0.32F, 0.17F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1078:3: note: in expansion of macro ‘reg_named_color’ 1078 | reg_named_color("wheat", 0.99F, 0.82F, 0.65F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1079:3: note: in expansion of macro ‘reg_named_color’ 1079 | reg_named_color("violet", 1.F, 0.5F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1088:5: note: in expansion of macro ‘reg_named_color’ 1088 | reg_named_color(name, a / 99.F, a / 99.F, a / 99.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1091:3: note: in expansion of macro ‘reg_named_color’ 1091 | reg_named_color("lightmagenta", 1.F, 0.2F, 0.8F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1105:5: note: in expansion of macro ‘reg_named_color’ 1105 | reg_named_color(name, | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1121:5: note: in expansion of macro ‘reg_named_color’ 1121 | reg_named_color(name, | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1137:5: note: in expansion of macro ‘reg_named_color’ 1137 | reg_named_color(name, | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1155:5: note: in expansion of macro ‘reg_named_color’ 1155 | reg_named_color(name, | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1161:3: note: in expansion of macro ‘reg_named_color’ 1161 | reg_named_color("density", 0.1F, 0.1F, 0.6F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1168:5: note: in expansion of macro ‘reg_named_color’ 1168 | reg_named_color(name, a / 99.F, a / 99.F, a / 99.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1183:5: note: in expansion of macro ‘reg_named_color’ 1183 | reg_named_color(name, | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1189:3: note: in expansion of macro ‘reg_named_color’ 1189 | reg_named_color("paleyellow", 1.F, 1.F, 0.5F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1190:3: note: in expansion of macro ‘reg_named_color’ 1190 | reg_named_color("aquamarine", 0.5F, 1.F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1191:3: note: in expansion of macro ‘reg_named_color’ 1191 | reg_named_color("deepsalmon", 1.F, 0.5F, 0.5F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1192:3: note: in expansion of macro ‘reg_named_color’ 1192 | reg_named_color("palegreen", 0.65F, 0.9F, 0.65F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1193:3: note: in expansion of macro ‘reg_named_color’ 1193 | reg_named_color("deepolive", 0.6F, 0.6F, 0.1F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1194:3: note: in expansion of macro ‘reg_named_color’ 1194 | reg_named_color("deeppurple", 0.6F, 0.1F, 0.6F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1195:3: note: in expansion of macro ‘reg_named_color’ 1195 | reg_named_color("deepteal", 0.1F, 0.6F, 0.6F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1196:3: note: in expansion of macro ‘reg_named_color’ 1196 | reg_named_color("lightblue", 0.75F, 0.75F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1197:3: note: in expansion of macro ‘reg_named_color’ 1197 | reg_named_color("lightorange", 1.F, 0.8F, 0.5F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1198:3: note: in expansion of macro ‘reg_named_color’ 1198 | reg_named_color("palecyan", 0.8F, 1.F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1199:3: note: in expansion of macro ‘reg_named_color’ 1199 | reg_named_color("lightteal", 0.4F, 0.7F, 0.7F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1200:3: note: in expansion of macro ‘reg_named_color’ 1200 | reg_named_color("splitpea", 0.52F, 0.75F, 0.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1201:3: note: in expansion of macro ‘reg_named_color’ 1201 | reg_named_color("raspberry", 0.7F, 0.3F, 0.4F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1202:3: note: in expansion of macro ‘reg_named_color’ 1202 | reg_named_color("sand", 0.72F, 0.55F, 0.3F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1203:3: note: in expansion of macro ‘reg_named_color’ 1203 | reg_named_color("smudge", 0.55F, 0.7F, 0.4F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1204:3: note: in expansion of macro ‘reg_named_color’ 1204 | reg_named_color("violetpurple", 0.55F, 0.25F, 0.6F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1205:3: note: in expansion of macro ‘reg_named_color’ 1205 | reg_named_color("dirtyviolet", 0.7F, 0.5F, 0.5F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1208:3: note: in expansion of macro ‘reg_named_color’ 1208 | reg_named_color("_deepsalmon", 1.F, 0.42F, 0.42F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1210:3: note: in expansion of macro ‘reg_named_color’ 1210 | reg_named_color("lightpink", 1.F, 0.75F, 0.87F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1211:3: note: in expansion of macro ‘reg_named_color’ 1211 | reg_named_color("greencyan", 0.25F, 1.F, 0.75F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1212:3: note: in expansion of macro ‘reg_named_color’ 1212 | reg_named_color("limon", 0.75F, 1.F, 0.25F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1213:3: note: in expansion of macro ‘reg_named_color’ 1213 | reg_named_color("skyblue", 0.2F, 0.5F, 0.8F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1214:3: note: in expansion of macro ‘reg_named_color’ 1214 | reg_named_color("bluewhite", 0.85F, 0.85F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1215:3: note: in expansion of macro ‘reg_named_color’ 1215 | reg_named_color("warmpink", 0.85F, 0.2F, 0.5F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1216:3: note: in expansion of macro ‘reg_named_color’ 1216 | reg_named_color("darksalmon", 0.73F, 0.55F, 0.52F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1217:3: note: in expansion of macro ‘reg_named_color’ 1217 | reg_named_color("helium", 0.850980392F, 1.F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1218:3: note: in expansion of macro ‘reg_named_color’ 1218 | reg_named_color("lithium", 0.8F, 0.501960784F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1219:3: note: in expansion of macro ‘reg_named_color’ 1219 | reg_named_color("beryllium", 0.760784314F, 1.F, 0.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1220:3: note: in expansion of macro ‘reg_named_color’ 1220 | reg_named_color("boron", 1.F, 0.709803922F, 0.709803922F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1221:3: note: in expansion of macro ‘reg_named_color’ 1221 | reg_named_color("fluorine", 0.701960784F, 1.F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1222:3: note: in expansion of macro ‘reg_named_color’ 1222 | reg_named_color("neon", 0.701960784F, 0.890196078F, 0.960784314F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1223:3: note: in expansion of macro ‘reg_named_color’ 1223 | reg_named_color("sodium", 0.670588235F, 0.360784314F, 0.949019608F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1224:3: note: in expansion of macro ‘reg_named_color’ 1224 | reg_named_color("magnesium", 0.541176471F, 1.F, 0.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1225:3: note: in expansion of macro ‘reg_named_color’ 1225 | reg_named_color("aluminum", 0.749019608F, 0.650980392F, 0.650980392F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1226:3: note: in expansion of macro ‘reg_named_color’ 1226 | reg_named_color("silicon", 0.941176471F, 0.784313725F, 0.62745098F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1227:3: note: in expansion of macro ‘reg_named_color’ 1227 | reg_named_color("phosphorus", 1.F, 0.501960784F, 0.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1228:3: note: in expansion of macro ‘reg_named_color’ 1228 | reg_named_color("chlorine", 0.121568627F, 0.941176471F, 0.121568627F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1229:3: note: in expansion of macro ‘reg_named_color’ 1229 | reg_named_color("argon", 0.501960784F, 0.819607843F, 0.890196078F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1230:3: note: in expansion of macro ‘reg_named_color’ 1230 | reg_named_color("potassium", 0.560784314F, 0.250980392F, 0.831372549F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1231:3: note: in expansion of macro ‘reg_named_color’ 1231 | reg_named_color("calcium", 0.239215686F, 1.F, 0.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1232:3: note: in expansion of macro ‘reg_named_color’ 1232 | reg_named_color("scandium", 0.901960784F, 0.901960784F, 0.901960784F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1233:3: note: in expansion of macro ‘reg_named_color’ 1233 | reg_named_color("titanium", 0.749019608F, 0.760784314F, 0.780392157F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1234:3: note: in expansion of macro ‘reg_named_color’ 1234 | reg_named_color("vanadium", 0.650980392F, 0.650980392F, 0.670588235F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1235:3: note: in expansion of macro ‘reg_named_color’ 1235 | reg_named_color("chromium", 0.541176471F, 0.6F, 0.780392157F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1236:3: note: in expansion of macro ‘reg_named_color’ 1236 | reg_named_color("manganese", 0.611764706F, 0.478431373F, 0.780392157F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1237:3: note: in expansion of macro ‘reg_named_color’ 1237 | reg_named_color("iron", 0.878431373F, 0.4F, 0.2F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1238:3: note: in expansion of macro ‘reg_named_color’ 1238 | reg_named_color("cobalt", 0.941176471F, 0.564705882F, 0.62745098F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1239:3: note: in expansion of macro ‘reg_named_color’ 1239 | reg_named_color("nickel", 0.31372549F, 0.815686275F, 0.31372549F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1240:3: note: in expansion of macro ‘reg_named_color’ 1240 | reg_named_color("copper", 0.784313725F, 0.501960784F, 0.2F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1241:3: note: in expansion of macro ‘reg_named_color’ 1241 | reg_named_color("zinc", 0.490196078F, 0.501960784F, 0.690196078F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1242:3: note: in expansion of macro ‘reg_named_color’ 1242 | reg_named_color("gallium", 0.760784314F, 0.560784314F, 0.560784314F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1243:3: note: in expansion of macro ‘reg_named_color’ 1243 | reg_named_color("germanium", 0.4F, 0.560784314F, 0.560784314F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1244:3: note: in expansion of macro ‘reg_named_color’ 1244 | reg_named_color("arsenic", 0.741176471F, 0.501960784F, 0.890196078F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1245:3: note: in expansion of macro ‘reg_named_color’ 1245 | reg_named_color("selenium", 1.F, 0.631372549F, 0.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1246:3: note: in expansion of macro ‘reg_named_color’ 1246 | reg_named_color("bromine", 0.650980392F, 0.160784314F, 0.160784314F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1247:3: note: in expansion of macro ‘reg_named_color’ 1247 | reg_named_color("krypton", 0.360784314F, 0.721568627F, 0.819607843F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1248:3: note: in expansion of macro ‘reg_named_color’ 1248 | reg_named_color("rubidium", 0.439215686F, 0.180392157F, 0.690196078F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1249:3: note: in expansion of macro ‘reg_named_color’ 1249 | reg_named_color("strontium", 0.F, 1.F, 0.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1250:3: note: in expansion of macro ‘reg_named_color’ 1250 | reg_named_color("yttrium", 0.580392157F, 1.F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1251:3: note: in expansion of macro ‘reg_named_color’ 1251 | reg_named_color("zirconium", 0.580392157F, 0.878431373F, 0.878431373F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1252:3: note: in expansion of macro ‘reg_named_color’ 1252 | reg_named_color("niobium", 0.450980392F, 0.760784314F, 0.788235294F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1253:3: note: in expansion of macro ‘reg_named_color’ 1253 | reg_named_color("molybdenum", 0.329411765F, 0.709803922F, 0.709803922F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1254:3: note: in expansion of macro ‘reg_named_color’ 1254 | reg_named_color("technetium", 0.231372549F, 0.619607843F, 0.619607843F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1255:3: note: in expansion of macro ‘reg_named_color’ 1255 | reg_named_color("ruthenium", 0.141176471F, 0.560784314F, 0.560784314F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1256:3: note: in expansion of macro ‘reg_named_color’ 1256 | reg_named_color("rhodium", 0.039215686F, 0.490196078F, 0.549019608F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1257:3: note: in expansion of macro ‘reg_named_color’ 1257 | reg_named_color("palladium", 0.F, 0.411764706F, 0.521568627F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1258:3: note: in expansion of macro ‘reg_named_color’ 1258 | reg_named_color("silver", 0.752941176F, 0.752941176F, 0.752941176F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1259:3: note: in expansion of macro ‘reg_named_color’ 1259 | reg_named_color("cadmium", 1.F, 0.850980392F, 0.560784314F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1260:3: note: in expansion of macro ‘reg_named_color’ 1260 | reg_named_color("indium", 0.650980392F, 0.458823529F, 0.450980392F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1261:3: note: in expansion of macro ‘reg_named_color’ 1261 | reg_named_color("tin", 0.4F, 0.501960784F, 0.501960784F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1262:3: note: in expansion of macro ‘reg_named_color’ 1262 | reg_named_color("antimony", 0.619607843F, 0.388235294F, 0.709803922F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1263:3: note: in expansion of macro ‘reg_named_color’ 1263 | reg_named_color("tellurium", 0.831372549F, 0.478431373F, 0.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1264:3: note: in expansion of macro ‘reg_named_color’ 1264 | reg_named_color("iodine", 0.580392157F, 0.F, 0.580392157F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1265:3: note: in expansion of macro ‘reg_named_color’ 1265 | reg_named_color("xenon", 0.258823529F, 0.619607843F, 0.690196078F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1266:3: note: in expansion of macro ‘reg_named_color’ 1266 | reg_named_color("cesium", 0.341176471F, 0.090196078F, 0.560784314F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1267:3: note: in expansion of macro ‘reg_named_color’ 1267 | reg_named_color("barium", 0.F, 0.788235294F, 0.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1268:3: note: in expansion of macro ‘reg_named_color’ 1268 | reg_named_color("lanthanum", 0.439215686F, 0.831372549F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1269:3: note: in expansion of macro ‘reg_named_color’ 1269 | reg_named_color("cerium", 1.F, 1.F, 0.780392157F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1270:3: note: in expansion of macro ‘reg_named_color’ 1270 | reg_named_color("praseodymium", 0.850980392F, 1.F, 0.780392157F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1271:3: note: in expansion of macro ‘reg_named_color’ 1271 | reg_named_color("neodymium", 0.780392157F, 1.F, 0.780392157F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1272:3: note: in expansion of macro ‘reg_named_color’ 1272 | reg_named_color("promethium", 0.639215686F, 1.F, 0.780392157F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1273:3: note: in expansion of macro ‘reg_named_color’ 1273 | reg_named_color("samarium", 0.560784314F, 1.F, 0.780392157F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1274:3: note: in expansion of macro ‘reg_named_color’ 1274 | reg_named_color("europium", 0.380392157F, 1.F, 0.780392157F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1275:3: note: in expansion of macro ‘reg_named_color’ 1275 | reg_named_color("gadolinium", 0.270588235F, 1.F, 0.780392157F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1276:3: note: in expansion of macro ‘reg_named_color’ 1276 | reg_named_color("terbium", 0.188235294F, 1.F, 0.780392157F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1277:3: note: in expansion of macro ‘reg_named_color’ 1277 | reg_named_color("dysprosium", 0.121568627F, 1.F, 0.780392157F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1278:3: note: in expansion of macro ‘reg_named_color’ 1278 | reg_named_color("holmium", 0.F, 1.F, 0.611764706F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1279:3: note: in expansion of macro ‘reg_named_color’ 1279 | reg_named_color("erbium", 0.F, 0.901960784F, 0.458823529F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1280:3: note: in expansion of macro ‘reg_named_color’ 1280 | reg_named_color("thulium", 0.F, 0.831372549F, 0.321568627F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1281:3: note: in expansion of macro ‘reg_named_color’ 1281 | reg_named_color("ytterbium", 0.F, 0.749019608F, 0.219607843F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1282:3: note: in expansion of macro ‘reg_named_color’ 1282 | reg_named_color("lutetium", 0.F, 0.670588235F, 0.141176471F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1283:3: note: in expansion of macro ‘reg_named_color’ 1283 | reg_named_color("hafnium", 0.301960784F, 0.760784314F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1284:3: note: in expansion of macro ‘reg_named_color’ 1284 | reg_named_color("tantalum", 0.301960784F, 0.650980392F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1285:3: note: in expansion of macro ‘reg_named_color’ 1285 | reg_named_color("tungsten", 0.129411765F, 0.580392157F, 0.839215686F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1286:3: note: in expansion of macro ‘reg_named_color’ 1286 | reg_named_color("rhenium", 0.149019608F, 0.490196078F, 0.670588235F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1287:3: note: in expansion of macro ‘reg_named_color’ 1287 | reg_named_color("osmium", 0.149019608F, 0.4F, 0.588235294F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1288:3: note: in expansion of macro ‘reg_named_color’ 1288 | reg_named_color("iridium", 0.090196078F, 0.329411765F, 0.529411765F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1289:3: note: in expansion of macro ‘reg_named_color’ 1289 | reg_named_color("platinum", 0.815686275F, 0.815686275F, 0.878431373F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1290:3: note: in expansion of macro ‘reg_named_color’ 1290 | reg_named_color("gold", 1.F, 0.819607843F, 0.137254902F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1291:3: note: in expansion of macro ‘reg_named_color’ 1291 | reg_named_color("mercury", 0.721568627F, 0.721568627F, 0.815686275F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1292:3: note: in expansion of macro ‘reg_named_color’ 1292 | reg_named_color("thallium", 0.650980392F, 0.329411765F, 0.301960784F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1293:3: note: in expansion of macro ‘reg_named_color’ 1293 | reg_named_color("lead", 0.341176471F, 0.349019608F, 0.380392157F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1294:3: note: in expansion of macro ‘reg_named_color’ 1294 | reg_named_color("bismuth", 0.619607843F, 0.309803922F, 0.709803922F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1295:3: note: in expansion of macro ‘reg_named_color’ 1295 | reg_named_color("polonium", 0.670588235F, 0.360784314F, 0.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1296:3: note: in expansion of macro ‘reg_named_color’ 1296 | reg_named_color("astatine", 0.458823529F, 0.309803922F, 0.270588235F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1297:3: note: in expansion of macro ‘reg_named_color’ 1297 | reg_named_color("radon", 0.258823529F, 0.509803922F, 0.588235294F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1298:3: note: in expansion of macro ‘reg_named_color’ 1298 | reg_named_color("francium", 0.258823529F, 0.F, 0.4F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1299:3: note: in expansion of macro ‘reg_named_color’ 1299 | reg_named_color("radium", 0.F, 0.490196078F, 0.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1300:3: note: in expansion of macro ‘reg_named_color’ 1300 | reg_named_color("actinium", 0.439215686F, 0.670588235F, 0.980392157F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1301:3: note: in expansion of macro ‘reg_named_color’ 1301 | reg_named_color("thorium", 0.F, 0.729411765F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1302:3: note: in expansion of macro ‘reg_named_color’ 1302 | reg_named_color("protactinium", 0.F, 0.631372549F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1303:3: note: in expansion of macro ‘reg_named_color’ 1303 | reg_named_color("uranium", 0.F, 0.560784314F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1304:3: note: in expansion of macro ‘reg_named_color’ 1304 | reg_named_color("neptunium", 0.F, 0.501960784F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1305:3: note: in expansion of macro ‘reg_named_color’ 1305 | reg_named_color("plutonium", 0.F, 0.419607843F, 1.F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1306:3: note: in expansion of macro ‘reg_named_color’ 1306 | reg_named_color("americium", 0.329411765F, 0.360784314F, 0.949019608F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1307:3: note: in expansion of macro ‘reg_named_color’ 1307 | reg_named_color("curium", 0.470588235F, 0.360784314F, 0.890196078F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1308:3: note: in expansion of macro ‘reg_named_color’ 1308 | reg_named_color("berkelium", 0.541176471F, 0.309803922F, 0.890196078F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1309:3: note: in expansion of macro ‘reg_named_color’ 1309 | reg_named_color("californium", 0.631372549F, 0.211764706F, 0.831372549F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1310:3: note: in expansion of macro ‘reg_named_color’ 1310 | reg_named_color("einsteinium", 0.701960784F, 0.121568627F, 0.831372549F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1311:3: note: in expansion of macro ‘reg_named_color’ 1311 | reg_named_color("fermium", 0.701960784F, 0.121568627F, 0.729411765F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1312:3: note: in expansion of macro ‘reg_named_color’ 1312 | reg_named_color("mendelevium", 0.701960784F, 0.050980392F, 0.650980392F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1313:3: note: in expansion of macro ‘reg_named_color’ 1313 | reg_named_color("nobelium", 0.741176471F, 0.050980392F, 0.529411765F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1314:3: note: in expansion of macro ‘reg_named_color’ 1314 | reg_named_color("lawrencium", 0.780392157F, 0.F, 0.4F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1315:3: note: in expansion of macro ‘reg_named_color’ 1315 | reg_named_color("rutherfordium", 0.8F, 0.F, 0.349019608F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1316:3: note: in expansion of macro ‘reg_named_color’ 1316 | reg_named_color("dubnium", 0.819607843F, 0.F, 0.309803922F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1317:3: note: in expansion of macro ‘reg_named_color’ 1317 | reg_named_color("seaborgium", 0.850980392F, 0.F, 0.270588235F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1318:3: note: in expansion of macro ‘reg_named_color’ 1318 | reg_named_color("bohrium", 0.878431373F, 0.F, 0.219607843F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1319:3: note: in expansion of macro ‘reg_named_color’ 1319 | reg_named_color("hassium", 0.901960784F, 0.F, 0.180392157F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1320:3: note: in expansion of macro ‘reg_named_color’ 1320 | reg_named_color("meitnerium", 0.921568627F, 0.F, 0.149019608F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1321:3: note: in expansion of macro ‘reg_named_color’ 1321 | reg_named_color("deuterium", 0.9F, 0.9F, 0.9F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1322:3: note: in expansion of macro ‘reg_named_color’ 1322 | reg_named_color("lonepair", 0.5F, 0.5F, 0.5F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map, int>::mapped_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1023 | assert(I->Idx[name] == Color.size() - 1); \ layer1/Color.cpp:1323:3: note: in expansion of macro ‘reg_named_color’ 1323 | reg_named_color("pseudoatom", 0.9F, 0.9F, 0.9F); | ^~~~~~~~~~~~~~~ layer1/Color.cpp: In function ‘void ColorUpdateFromLut(PyMOLGlobals*, int)’: layer1/Color.cpp:1695:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1695 | for(i = 0; i < I->Color.size(); i++) { | ~~^~~~~~~~~~~~~~~~~ layer1/Color.cpp:1699:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1699 | if(index < I->Color.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~ layer1/Color.cpp: In function ‘const float* ColorGet(PyMOLGlobals*, int)’: layer1/Color.cpp:1808:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1808 | if((index >= 0) && (index < I->Color.size())) { | ~~~~~~^~~~~~~~~~~~~~~~~ layer1/Color.cpp: In function ‘const float* ColorGetRaw(PyMOLGlobals*, int)’: layer1/Color.cpp:1835:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1835 | if((index >= 0) && (index < I->Color.size())) { | ~~~~~~^~~~~~~~~~~~~~~~~ layer1/Color.cpp: In function ‘int ColorGetEncoded(PyMOLGlobals*, int, float*)’: layer1/Color.cpp:1853:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1853 | if((index >= 0) && (index < I->Color.size())) { | ~~~~~~^~~~~~~~~~~~~~~~~ layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitiveName(PyMOLGlobals*, const Sequence&, const char*) [with Sequence = std::vector]’: layer1/Color.cpp:304:35: required from here 304 | return findByCaseInsensitiveName(G, G->Color->Ext, name); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ layer1/Color.cpp:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 245 | for (int a = 0; a < seq.size(); ++a) { | ~~^~~~~~~~~~~~ layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitiveName(PyMOLGlobals*, const Sequence&, const char*) [with Sequence = std::vector]’: layer1/Color.cpp:626:38: required from here 626 | color = findByCaseInsensitiveName(G, I->Color, name); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ layer1/Color.cpp:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 245 | for (int a = 0; a < seq.size(); ++a) { | ~~^~~~~~~~~~~~ layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitivePrefix(PyMOLGlobals*, const Sequence&, const char*, int&) [with Sequence = std::vector]’: layer1/Color.cpp:741:42: required from here 741 | int color = findByCaseInsensitivePrefix(G, I->Color, name, best); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Color.cpp:275:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 275 | for (int a = 0; a < seq.size(); ++a) { | ~~^~~~~~~~~~~~ layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitivePrefix(PyMOLGlobals*, const Sequence&, const char*, int&) [with Sequence = std::vector]’: layer1/Color.cpp:743:54: required from here 743 | int const ext_color = findByCaseInsensitivePrefix(G, I->Ext, name, best); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ layer1/Color.cpp:275:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 275 | for (int a = 0; a < seq.size(); ++a) { | ~~^~~~~~~~~~~~ layer1/SceneMouse.cpp: In function ‘SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, NamedPicking const&, int, bool)’: layer1/SceneMouse.cpp:455:32: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=] 455 | " You clicked %s -> (%s)\n", buffer.c_str(), name ENDFB(G); | ^~ ~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from include/pymol/zstring_view.h:12, from layer1/SceneMouse.h:4, from layer1/SceneMouse.cpp:1: In function ‘snprintf’, inlined from ‘SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, NamedPicking const&, int, bool)’ at layer1/SceneMouse.cpp:454:11: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output 21 or more bytes (assuming 276) into a destination of size 255 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function ‘SceneRenderPickingMultiPick(PyMOLGlobals*, SceneUnitContext*, Multipick*, unsigned int)’, inlined from ‘SceneRenderPicking(PyMOLGlobals*, int, int*, int, Picking*, int, int, Multipick*, SceneUnitContext*, unsigned int)’ at layer1/ScenePicking.cpp:314:32: layer1/ScenePicking.cpp:249:7: warning: ‘previous.src.index’ may be used uninitialized [-Wmaybe-uninitialized] 249 | if (pik->src.index != previous.src.index || | ^~ layer1/ScenePicking.cpp: In function ‘SceneRenderPicking(PyMOLGlobals*, int, int*, int, Picking*, int, int, Multipick*, SceneUnitContext*, unsigned int)’: layer1/ScenePicking.cpp:238:11: note: ‘previous.src.index’ was declared here 238 | Picking previous; | ^~~~~~~~ In file included from layer0/vla.h:7, from layer1/Symmetry.h:26, from layer1/PyMOLObject.h:27, from layer1/Scene.h:22, from layer1/Control.cpp:25: layer1/Control.cpp: In function ‘void ControlFree(PyMOLGlobals*)’: layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CControl’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}} layer1/Control.cpp:410:3: note: in expansion of macro ‘DeleteP’ 410 | DeleteP(G->Control); | ^~~~~~~ layer1/Seq.cpp: In function ‘int SeqFindRowCol(PyMOLGlobals*, int, int, int*, int*, int)’: layer1/Seq.cpp:61:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘unsigned int’} [-Wsign-compare] 61 | if((char_num >= 0) && (char_num < row->ext_len) && (row->char2col)) { | ~~~~~~~~~^~~~~~~~~~~~~~ layer1/Seq.cpp: In member function ‘virtual void CSeq::reshape(int, int)’: layer1/Seq.cpp:114:28: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 114 | if(I->Row[a].ext_len > I->Size) layer1/Seq.cpp: In member function ‘virtual void CSeq::draw(CGO*)’: layer1/Seq.cpp:392:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘unsigned int’} [-Wsign-compare] 392 | if(max_len < row->ext_len) | ~~~~~~~~^~~~~~~~~~~~~~ In file included from layer0/vla.h:7, from layer1/Symmetry.h:26, from layer1/PyMOLObject.h:27, from layer1/Seq.h:21, from layer1/Seq.cpp:22: layer1/Seq.cpp: In function ‘void SeqFree(PyMOLGlobals*)’: layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CSeq’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}} layer1/Seq.cpp:731:3: note: in expansion of macro ‘DeleteP’ 731 | DeleteP(G->Seq); | ^~~~~~~ layer1/Seq.cpp: At global scope: layer1/Seq.cpp:717:13: warning: ‘void SeqPurgeRowVLA(PyMOLGlobals*)’ defined but not used [-Wunused-function] 717 | static void SeqPurgeRowVLA(PyMOLGlobals * G) | ^~~~~~~~~~~~~~ layer1/Extrude.cpp: In function ‘ExtrudeComputeTangents(CExtrude*)’: layer1/Extrude.cpp:741:13: warning: ‘*_62’ may be used uninitialized [-Wmaybe-uninitialized] 741 | *(v1++) = *(v++); /* first segment */ | ^~~~~~ layer1/Extrude.cpp:742:13: warning: ‘MEM[(float *)_62 + 4B]’ may be used uninitialized [-Wmaybe-uninitialized] 742 | *(v1++) = *(v++); | ^~~~~~ layer1/Extrude.cpp:743:13: warning: ‘MEM[(float *)_62 + 8B]’ may be used uninitialized [-Wmaybe-uninitialized] 743 | *(v1++) = *(v++); | ^~~~~~ layer1/Extrude.cpp: In function ‘ExtrudeCGOSurfaceTube(CExtrude const*, CGO*, cCylCap, float const*, bool, int)’: layer1/Extrude.cpp:948:37: warning: ‘start’ may be used uninitialized [-Wmaybe-uninitialized] 948 | if(color_override && (b > start) && (b < stop)) | ~~~^~~~~~~~ layer1/Extrude.cpp:875:7: note: ‘start’ was declared here 875 | int start, stop; | ^~~~~ layer1/Extrude.cpp:948:46: warning: ‘stop’ may be used uninitialized [-Wmaybe-uninitialized] 948 | if(color_override && (b > start) && (b < stop)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ layer1/Extrude.cpp:875:14: note: ‘stop’ was declared here 875 | int start, stop; | ^~~~ layer1/Setting.cpp: In function ‘void SettingGenerateSideEffects(PyMOLGlobals*, int, const char*, int, int)’: layer1/Setting.cpp:2070:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2070 | if (SettingGetGlobal_b(G, cSetting_precomputed_lighting)) | ^~ layer1/Setting.cpp:2072:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2072 | SceneInvalidate(G); | ^~~~~~~~~~~~~~~ layer1/Wizard.cpp: In member function ‘virtual int CWizard::release(int, int, int, int)’: layer1/Wizard.cpp:571:18: warning: unused variable ‘wiz’ [-Wunused-variable] 571 | if (auto wiz = WizardGet(G)) { | ^~~ layer1/Wizard.cpp: In member function ‘virtual void CWizard::draw(CGO*)’: layer1/Wizard.cpp:727:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 727 | else | ^~~~ layer1/Wizard.cpp:729:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 729 | drawTopEdge(); | ^~~~~~~~~~~ In file included from layer1/Wizard.cpp:27: layer1/Wizard.cpp: In function ‘void WizardFree(PyMOLGlobals*)’: layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CWizard’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}} layer1/Wizard.cpp:845:3: note: in expansion of macro ‘DeleteP’ 845 | DeleteP(G->Wizard); | ^~~~~~~ layer2/AtomInfo.cpp: In function ‘bool AtomResiFromResv(char*, size_t, int, char)’: layer2/AtomInfo.cpp:817:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 817 | return snprintf(resi, size, "%d%c", resv, inscode) < size; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ layer2/AtomInfo.cpp:818:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 818 | return snprintf(resi, size, "%d", resv) < size; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ layer2/CifMoleculeReader.cpp: In member function ‘void seqvec_t::set(int, const char*)’: layer2/CifMoleculeReader.cpp:108:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 108 | if (i > size()) | ~~^~~~~~~~ layer2/CifMoleculeReader.cpp: In member function ‘const char* seqvec_t::get(int) const’: layer2/CifMoleculeReader.cpp:114:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 114 | if (i < 1 || i > size()) | ~~^~~~~~~~ layer2/CifMoleculeReader.cpp: In function ‘CoordSet** read_pdbx_struct_assembly(PyMOLGlobals*, const pymol::cif_data*, const AtomInfoType*, const CoordSet*, const char*)’: layer2/CifMoleculeReader.cpp:827:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 827 | while (j < c_src_len * c_it->size()) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer2/CifMoleculeReader.cpp:31: layer2/CifBondDict.h: In member function ‘res_bond_dict_t::add_alt_name(char const*, char const*)’: layer2/CifBondDict.h:41:12: warning: ‘strncpy’ specified bound 4 equals destination size [-Wstringop-truncation] 41 | strncpy(s, name, sizeof(halfkey_t)); | ^ layer1/SymOp.cpp: In member function ‘pymol::SymOp::to_string[abi:cxx11]() const’: layer1/SymOp.cpp:37:32: warning: ‘%d’ directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=] 37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5); | ^~ layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132] 37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5); | ^~~~~~~~~~~ layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132] In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from layer1/SymOp.h:9, from layer1/SymOp.cpp:7: In function ‘snprintf’, inlined from ‘pymol::SymOp::to_string[abi:cxx11]() const’ at layer1/SymOp.cpp:37:16: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 6 and 17 bytes into a destination of size 8 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/CifBondDict.h: In function ‘read_chem_comp_bond_dict(pymol::cif_data const*, bond_dict_t&)’: layer2/CifBondDict.h:93:12: warning: ‘strncpy’ specified bound 8 equals destination size [-Wstringop-truncation] 93 | strncpy(s, s_, sizeof(s)); | ^ layer2/CifBondDict.h: In member function ‘bond_dict_t::get(PyMOLGlobals*, char const*, bool)’: layer2/CifBondDict.h:93:12: warning: ‘strncpy’ specified bound 8 equals destination size [-Wstringop-truncation] In file included from /usr/include/c++/14/cassert:44, from layer0/Field.h:24, from layer3/Executive.h:27, from layer2/CoordSet.cpp:54: layer2/CoordSet.cpp: In member function ‘int CoordSet::atmToIdx(int) const’: layer2/CoordSet.cpp:134:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 134 | assert(atm < AtmToIdx.size()); | ~~~~^~~~~~~~~~~~~~~~~ layer2/CoordSet.cpp: In member function ‘void CoordSet::updateNonDiscreteAtmToIdx(unsigned int)’: layer2/CoordSet.cpp:140:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 140 | assert(!Obj || natom == Obj->NAtom); | ~~~~~~^~~~~~~~~~~~~ layer2/CoordSet.cpp:145:16: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘unsigned int’ [-Wsign-compare] 145 | assert(atm < natom); | ~~~~^~~~~~~ layer2/CoordSet.cpp: In member function ‘int CoordSet::extendIndices(int)’: layer2/CoordSet.cpp:1572:21: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘int’ [-Wsign-compare] 1572 | assert(NAtIndex <= nAtom); | ~~~~~~~~~^~~~~~~~ layer2/CoordSet.cpp:1573:18: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘int’ [-Wsign-compare] 1573 | if (NAtIndex < nAtom) { | ~~~~~~~~~^~~~~~~ layer2/CoordSet.cpp: In function ‘void CoordSetAtomToPDBStrVLA(PyMOLGlobals*, char**, int*, const AtomInfoType*, const float*, int, const PDBInfoRec*, const double*)’: layer2/CoordSet.cpp:1014:14: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 1014 | strncpy(anisoline, "ANISOU", 6); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ layer2/DistSet.cpp: In function ‘int DistSetGetLabelVertex(DistSet*, int, float*)’: layer2/DistSet.cpp:43:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 43 | if (at >= 0 && at < I->LabCoord.size()) { | ~~~^~~~~~~~~~~~~~~~~~~~ layer2/DistSet.cpp: In member function ‘pymol::Result > DistSet::getLabelOffset(int) const’: layer2/DistSet.cpp:59:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 59 | if (atm < 0 || atm >= this->LabPos.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~ layer2/HydrogenAdder.cpp: In function ‘int ObjectMoleculeAddSeleHydrogensRefactored(ObjectMolecule*, int, int)’: layer2/HydrogenAdder.cpp:283:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 283 | for (unsigned atm = 0; atm < n_atom_old; atm++) { | ~~~~^~~~~~~~~~~~ layer2/HydrogenAdder.cpp:301:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 301 | for (unsigned atm = 0; atm < n_atom_old; ++atm) { | ~~~~^~~~~~~~~~~~ layer2/HydrogenAdder.cpp:349:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 349 | for (unsigned idx = 0; idx < cs->NIndex; ++idx) { | ~~~~^~~~~~~~~~~~ layer2/MmtfMoleculeReader.cpp: In function ‘ObjectMolecule* ObjectMoleculeReadMmtfStr(PyMOLGlobals*, ObjectMolecule*, const char*, int, int, int, int, int, int)’: layer2/MmtfMoleculeReader.cpp:171:18: warning: the address of ‘MMTF_container::unitCell’ will never be NULL [-Waddress] 171 | if (container->unitCell && | ~~~~~~~~~~~^~~~~~~~ In file included from layer2/MmtfMoleculeReader.cpp:14: contrib/mmtf-c/mmtf_parser.h:104:11: note: ‘MMTF_container::unitCell’ declared here 104 | float unitCell[6]; | ^~~~~~~~ layer2/MmtfMoleculeReader.cpp:223:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 223 | for (int l = 0, offset = atomIndex; l < group->bondAtomListCount / 2; ++l) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/cassert:44, from layer0/vla.h:10, from layer1/Symmetry.h:26, from layer1/PyMOLObject.h:27, from layer2/ObjectMolecule.h:24, from layer2/MmtfMoleculeReader.cpp:9: layer2/MmtfMoleculeReader.cpp:276:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 276 | assert(cset->IdxToAtm.size() == cset->getNIndex()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ layer2/MmtfMoleculeReader.cpp:287:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 287 | for (int l = 0; l < container->bondAtomListCount / 2; ++l) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectVolume.cpp: In function ‘PyObject* ObjectVolumeAllStatesAsPyList(ObjectVolume*)’: layer2/ObjectVolume.cpp:127:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 127 | for(int a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectVolume.cpp: In function ‘int ObjectVolumeAllStatesFromPyList(ObjectVolume*, PyObject*)’: layer2/ObjectVolume.cpp:248:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 248 | for(int a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectVolume.cpp: In function ‘int ObjectVolumeInvalidateMapName(ObjectVolume*, const char*, const char*)’: layer2/ObjectVolume.cpp:313:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 313 | for(int a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::invalidate(cRep_t, cRepInv_t, int)’: layer2/ObjectVolume.cpp:341:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 341 | for(a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::update()’: layer2/ObjectVolume.cpp:402:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 402 | for(int a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectVolume.cpp:440:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 440 | for (i = 0; i < vs->Ramp.size(); i += 5) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::render(RenderInfo*)’: layer2/ObjectVolume.cpp:759:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 759 | for(a = 0; a < I->State.size(); ++a) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectVolume.cpp: In function ‘ObjectVolume* ObjectVolumeFromXtalSym(PyMOLGlobals*, ObjectVolume*, ObjectMap*, CSymmetry*, int, int, float*, float*, float, int, float, float*, int)’: layer2/ObjectVolume.cpp:1131:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 1131 | if(I->State.size() <= state) { | ~~~~~~~~~~~~~~~~^~~~~~~~ layer2/ObjectVolume.cpp: In function ‘void ObjectVolumeRecomputeExtent(ObjectVolume*)’: layer2/ObjectVolume.cpp:1232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1232 | for(int a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/cassert:44, from layer0/Field.h:24, from layer0/Isosurf.h:24, from layer2/ObjectMap.h:25, from layer2/ObjectVolume.h:20, from layer2/ObjectVolume.cpp:29: layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = unsigned char; SizeTs = {int, int, int}]’: layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = unsigned char; SizeTs = {int, int, int}]’ 114 | return *ptr(pos...); | ~~~~~~^~~~~~~~ layer2/ObjectVolume.cpp:534:44: required from here 534 | vs->carvemask->get(x, y, z) = flag ? 0x0 : 0xFF; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ layer2/ObjectVolume.cpp: At global scope: layer2/ObjectVolume.cpp:657:15: warning: ‘size_t createPreintegrationTexture(PyMOLGlobals*, const float*, int)’ defined but not used [-Wunused-function] 657 | static size_t createPreintegrationTexture(PyMOLGlobals * G, const float *Table, const int count) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectCGO.cpp: In function ‘PyObject* ObjectCGOAllStatesAsPyList(ObjectCGO*)’: layer2/ObjectCGO.cpp:53:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 53 | for(a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectCGO.cpp: In function ‘int ObjectCGOAllStatesFromPyList(ObjectCGO*, PyObject*, int)’: layer2/ObjectCGO.cpp:104:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 104 | for(a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectCGO.cpp: In member function ‘virtual void ObjectCGO::invalidate(cRep_t, cRepInv_t, int)’: layer2/ObjectCGO.cpp:205:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 205 | if((state >= 0) && (state < I->State.size())) { | ~~~~~~^~~~~~~~~~~~~~~~~ layer2/ObjectCGO.cpp: In member function ‘virtual void ObjectCGO::render(RenderInfo*)’: layer2/ObjectCGO.cpp:488:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 488 | if (!ray) | ^~ layer2/ObjectCGO.cpp:490:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 490 | ObjectCGORenderState(G, pass, ray, I, info, sobj, color, ramp, use_shader, cgo_lighting); | ^~~~~~~~~~~~~~~~~~~~ In file included from layer2/ObjectCGO.cpp:24: layer2/ObjectCGO.h: In copy constructor ‘ObjectCGOState::ObjectCGOState(const ObjectCGOState&)’: layer2/ObjectCGO.h:28:17: warning: ‘ObjectCGOState::G’ will be initialized after [-Wreorder] 28 | PyMOLGlobals* G; | ^ layer2/ObjectCGO.h:27:25: warning: ‘pymol::cache_ptr ObjectCGOState::renderCGO’ [-Wreorder] 27 | pymol::cache_ptr renderCGO; | ^~~~~~~~~ layer2/ObjectCGO.cpp:517:1: warning: when initialized here [-Wreorder] 517 | ObjectCGOState::ObjectCGOState(const ObjectCGOState& other) | ^~~~~~~~~~~~~~ layer2/ObjectCGO.h:29:58: warning: ‘ObjectCGOState::hasOpaque’ will be initialized after [-Wreorder] 29 | bool renderWithShaders, hasTransparency, cgo_lighting, hasOpaque; | ^~~~~~~~~ layer2/ObjectCGO.h:29:44: warning: ‘bool ObjectCGOState::cgo_lighting’ [-Wreorder] 29 | bool renderWithShaders, hasTransparency, cgo_lighting, hasOpaque; | ^~~~~~~~~~~~ layer2/ObjectCGO.cpp:517:1: warning: when initialized here [-Wreorder] 517 | ObjectCGOState::ObjectCGOState(const ObjectCGOState& other) | ^~~~~~~~~~~~~~ layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGOFromCGO(PyMOLGlobals*, ObjectCGO*, CGO*, int)’: layer2/ObjectCGO.cpp:602:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 602 | if(I->State.size() <= state) { | ~~~~~~~~~~~~~~~~^~~~~~~~ layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGODefine(PyMOLGlobals*, ObjectCGO*, PyObject*, int)’: layer2/ObjectCGO.cpp:667:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 667 | if(I->State.size() <= state) { | ~~~~~~~~~~~~~~~~^~~~~~~~ layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGOFromFloatArray(PyMOLGlobals*, ObjectCGO*, float*, int, int, int)’: layer2/ObjectCGO.cpp:725:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 725 | if(I->State.size() <= state) { | ~~~~~~~~~~~~~~~~^~~~~~~~ layer2/ObjectVolume.cpp: In function ‘ObjectVolumeStateGetMapState(ObjectVolumeState*)’: layer2/ObjectVolume.cpp:74:33: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] 74 | "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName | ^~ In file included from /usr/include/stdio.h:970, from /usr/include/python3.13/Python.h:37, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: In function ‘snprintf’, inlined from ‘ObjectVolumeStateGetMapState(ObjectVolumeState*)’ at layer2/ObjectVolume.cpp:73:5: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 46 and 301 bytes into a destination of size 255 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectDist.cpp: In function ‘int ObjectDistMoveWithObject(ObjectDist*, ObjectMolecule*)’: layer2/ObjectDist.cpp:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 111 | for (int i=0; iDSet.size(); i++) { | ~^~~~~~~~~~~~~~~ layer2/ObjectDist.cpp: In function ‘void ObjectDistUpdateExtents(ObjectDist*)’: layer2/ObjectDist.cpp:136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 136 | for(int a = 0; a < I->DSet.size(); a++) { | ~~^~~~~~~~~~~~~~~~ layer2/ObjectDist.cpp: In function ‘PyObject* ObjectDistDSetAsPyList(ObjectDist*)’: layer2/ObjectDist.cpp:148:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 148 | for(int a = 0; a < I->DSet.size(); a++) { | ~~^~~~~~~~~~~~~~~~ layer2/ObjectDist.cpp: In function ‘int ObjectDistDSetFromPyList(ObjectDist*, PyObject*)’: layer2/ObjectDist.cpp:165:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 165 | for(int a = 0; a < I->DSet.size(); a++) { | ~~^~~~~~~~~~~~~~~~ layer2/ObjectDist.cpp: In member function ‘virtual void ObjectDist::update()’: layer2/ObjectDist.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 241 | for(int a = 0; a < I->DSet.size(); a++) | ~~^~~~~~~~~~~~~~~~ layer2/ObjectDist.cpp: In function ‘void ObjectDistInvalidateRep(ObjectDist*, cRep_t)’: layer2/ObjectDist.cpp:257:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 257 | for(a = 0; a < I->DSet.size(); a++) | ~~^~~~~~~~~~~~~~~~ layer2/RepCartoon.cpp: In function ‘Rep* RepCartoonNew(CoordSet*, int)’: layer2/RepCartoon.cpp:3731:11: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class CCInOut’; use assignment or value-initialization instead [-Wclass-memaccess] 3731 | memset(car, 0, sizeof(*car) * nAtIndex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/RepCartoon.cpp:44:7: note: ‘class CCInOut’ declared here 44 | class CCInOut { | ^~~~~~~ In file included from layer2/CoordSet.h:24, from layer2/RepCartoon.h:21, from layer2/RepCartoon.cpp:27: In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’, inlined from ‘SettingUniqueGetIfDefined(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39, inlined from ‘AtomSettingGetIfDefined(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33, inlined from ‘AtomSettingGetWD(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36, inlined from ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’ at layer2/RepCartoon.cpp:337:23: layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized] 436 | int i = *out; | ^~~~ In file included from layer2/ObjectMolecule.h:25, from layer2/CoordSet.h:25: layer2/AtomInfo.h: In function ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’: layer2/AtomInfo.h:505:5: note: ‘out’ was declared here 505 | V out; | ^~~ In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’, inlined from ‘SettingUniqueGetIfDefined(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39, inlined from ‘AtomSettingGetIfDefined(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33, inlined from ‘AtomSettingGetWD(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36, inlined from ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’ at layer2/RepCartoon.cpp:338:23: layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized] 436 | int i = *out; | ^~~~ layer2/AtomInfo.h: In function ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’: layer2/AtomInfo.h:505:5: note: ‘out’ was declared here 505 | V out; | ^~~ layer2/RepCartoon.cpp: In function ‘do_ring(PyMOLGlobals*, nuc_acid_data*, int, int*, ObjectMolecule*, CoordSet*, float, CGO*, int, float, int, int, int, float, float, int*, float*, float)’: layer2/RepCartoon.cpp:1007:65: warning: ‘i’ may be used uninitialized [-Wmaybe-uninitialized] 1007 | float ladder_alpha = 1.0f - AtomSettingGetWD(G, ai_i[i], cSetting_cartoon_transparency, 1.0f - alpha); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/RepCartoon.cpp:461:11: note: ‘i’ was declared here 461 | int i; | ^ layer2/ObjectMap.cpp: In function ‘int ObjectMapValidXtal(ObjectMap*, int)’: layer2/ObjectMap.cpp:133:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 133 | if((state >= 0) && (state < I->State.size())) { | ~~~~~~^~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapTrim(ObjectMap*, int, float*, float*, int)’: layer2/ObjectMap.cpp:914:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 914 | } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) { | ~~~~~~^~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapDouble(ObjectMap*, int)’: layer2/ObjectMap.cpp:931:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 931 | } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) { | ~~~~~~^~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapHalve(ObjectMap*, int, int)’: layer2/ObjectMap.cpp:946:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 946 | } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) { | ~~~~~~^~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘void ObjectMapRegeneratePoints(ObjectMap*)’: layer2/ObjectMap.cpp:1189:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1189 | for (i=0; iState.size();i++){ | ~^~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘PyObject* ObjectMapAllStatesAsPyList(ObjectMap*)’: layer2/ObjectMap.cpp:1279:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1279 | for(a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘int ObjectMapAllStatesFromPyList(ObjectMap*, PyObject*)’: layer2/ObjectMap.cpp:1437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1437 | for(a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘int ObjectMapNewCopy(PyMOLGlobals*, const ObjectMap*, ObjectMap**, int, int)’: layer2/ObjectMap.cpp:1509:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1509 | for(state = 0; state < src->State.size(); state++) { | ~~~~~~^~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:1518:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1518 | if(source_state < src->State.size()) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘ObjectMapState* ObjectMapStatePrime(ObjectMap*, int)’: layer2/ObjectMap.cpp:1535:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 1535 | if(I->State.size() <= state) { | ~~~~~~~~~~~~~~~~^~~~~~~~ layer2/ObjectMap.cpp: In function ‘void ObjectMapUpdateExtents(ObjectMap*)’: layer2/ObjectMap.cpp:1548:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1548 | for(a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In member function ‘virtual void ObjectMap::invalidate(cRep_t, cRepInv_t, int)’: layer2/ObjectMap.cpp:1674:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1674 | for(a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘int ObjectMapCCP4StrToMap(ObjectMap*, char*, int, int, int, int)’: layer2/ObjectMap.cpp:2297:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2297 | if(bytes < 256 * sizeof(int)) { | ~~~~~~^~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:2307:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2307 | if(I->State.size() <= state) { | ~~~~~~~~~~~~~~~~^~~~~~~~ layer2/ObjectMap.cpp: In function ‘int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’: layer2/ObjectMap.cpp:2942:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2942 | if(I->State.size() <= state) { | ~~~~~~~~~~~~~~~~^~~~~~~~ layer2/ObjectMap.cpp: In function ‘int ObjectMapXPLORStrToMap(ObjectMap*, char*, int, int)’: layer2/ObjectMap.cpp:3216:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 3216 | if(I->State.size() <= state) { | ~~~~~~~~~~~~~~~~^~~~~~~~ layer2/ObjectMap.cpp: In function ‘int ObjectMapFLDStrToMap(ObjectMap*, char*, int, int, int)’: layer2/ObjectMap.cpp:3437:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 3437 | if(I->State.size() <= state) { | ~~~~~~~~~~~~~~~~^~~~~~~~ layer2/ObjectMap.cpp: In function ‘int ObjectMapBRIXStrToMap(ObjectMap*, char*, int, int, int)’: layer2/ObjectMap.cpp:3766:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 3766 | if(I->State.size() <= state) { | ~~~~~~~~~~~~~~~~^~~~~~~~ layer2/ObjectMap.cpp: In function ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’: layer2/ObjectMap.cpp:4172:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 4172 | if(I->State.size() <= state) { | ~~~~~~~~~~~~~~~~^~~~~~~~ layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadCCP4(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int, int)’: layer2/ObjectMap.cpp:4694:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4694 | if(state < I->State.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘int ObjectMapACNTStrToMap(ObjectMap*, char*, int, int, int)’: layer2/ObjectMap.cpp:5245:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 5245 | if(I->State.size() <= state) { | ~~~~~~~~~~~~~~~~^~~~~~~~ layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadXPLOR(PyMOLGlobals*, ObjectMap*, const char*, int, int, int)’: layer2/ObjectMap.cpp:5557:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5557 | if(state < I->State.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadChemPyBrick(PyMOLGlobals*, ObjectMap*, PyObject*, int, int, int)’: layer2/ObjectMap.cpp:5711:24: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 5711 | if(I->State.size() <= state) { | ~~~~~~~~~~~~~~~~^~~~~~~~ layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadChemPyMap(PyMOLGlobals*, ObjectMap*, PyObject*, int, int, int)’: layer2/ObjectMap.cpp:5809:24: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 5809 | if(I->State.size() <= state) { | ~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/c++/14/cassert:44, from layer0/Field.h:24, from layer0/Isosurf.h:24, from layer2/ObjectMap.h:25, from layer2/ObjectMap.cpp:27: layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’: layer2/ObjectMap.cpp:198:30: required from here 158 | #define Ffloat4p(f, a, b, c, d) ((f)->ptr(a, b, c, d)) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’: layer2/ObjectMap.cpp:1605:14: required from here 155 | #define Ffloat3p(f, a, b, c) ((f)->ptr(a, b, c)) | ~~~~~~~~~~~~~~~^~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’: layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’ 114 | return *ptr(pos...); | ~~~~~~^~~~~~~~ layer2/ObjectMap.cpp:5967:46: required from here 5967 | int value = field->data->get(xi, yi, zi); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /usr/lib/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h:5, from layer0/os_numpy.h:8, from layer2/ObjectMap.cpp:22: /usr/lib/python3.13/site-packages/numpy/core/include/numpy/__multiarray_api.h: At global scope: /usr/lib/python3.13/site-packages/numpy/core/include/numpy/__multiarray_api.h:1483:1: warning: ‘int _import_array()’ defined but not used [-Wunused-function] 1483 | _import_array(void) | ^~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘ObjectMapDump(ObjectMap const*, char const*, int, int)’: layer2/ObjectMap.cpp:5982:24: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=] 5982 | " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G); | ^~ In file included from /usr/include/stdio.h:970, from /usr/include/python3.13/Python.h:37, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: In function ‘snprintf’, inlined from ‘ObjectMapDump(ObjectMap const*, char const*, int, int)’ at layer2/ObjectMap.cpp:5981:5: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output 30 or more bytes (assuming 285) into a destination of size 255 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’: layer2/ObjectMap.cpp:4290:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] 4290 | " ObjectMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function ‘snprintf’, inlined from ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’ at layer2/ObjectMap.cpp:4289:3: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’: layer2/ObjectMap.cpp:4290:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] 4290 | " ObjectMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function ‘snprintf’, inlined from ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’ at layer2/ObjectMap.cpp:4289:3: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’: layer2/ObjectMap.cpp:2961:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2961 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function ‘snprintf’, inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2960:5, inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25, inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’: layer2/ObjectMap.cpp:2970:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2970 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function ‘snprintf’, inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2969:5, inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25, inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’: layer2/ObjectMap.cpp:2976:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2976 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function ‘snprintf’, inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2975:5, inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25, inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’: layer2/ObjectMap.cpp:3058:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 3058 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function ‘snprintf’, inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:3057:5, inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25, inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/RepDot.cpp: In function ‘RepDotDoNew(CoordSet*, cRepDot_t, int)’: layer2/RepDot.cpp:436:17: warning: ‘vn’ may be used uninitialized [-Wmaybe-uninitialized] 436 | *(vn++) = sp->dot[b][2]; | ~~~~~~~~^~~~~~~~~~~~~~~ layer2/RepDot.cpp:263:14: note: ‘vn’ was declared here 263 | float *v, *vn; | ^~ layer2/ObjectMesh.cpp: In member function ‘ObjectMesh::update()’: layer2/ObjectMesh.cpp:502:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=] 502 | "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectMesh.cpp:33: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 50 and 305 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMesh.cpp:535:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=] 535 | " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G); | ^~ layer0/Feedback.h:274:15: note: ‘snprintf’ output between 27 and 282 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMesh.cpp: In function ‘ObjectMeshDump(ObjectMesh*, char const*, int, int)’: layer2/ObjectMesh.cpp:329:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] 329 | " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G); | ^~ layer0/Feedback.h:274:15: note: ‘snprintf’ output 31 or more bytes (assuming 286) into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMolecule.cpp: In function ‘int ObjectMoleculeFillOpenValences(ObjectMolecule*, int)’: layer2/ObjectMolecule.cpp:3531:14: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘signed char’ [-Wsign-compare] 3531 | if((nn >= ai->valence) || (!flag)) | ~~~^~~~~~~~~~~~~~ layer2/ObjectMolecule.cpp: In function ‘pymol::Result<> ObjectMoleculeAddBondByIndices(ObjectMolecule*, unsigned int, unsigned int, int)’: layer2/ObjectMolecule.cpp:4328:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 4328 | if (atm1 >= I->NAtom || atm2 >= I->NAtom) { | ~~~~~^~~~~~~~~~~ layer2/ObjectMolecule.cpp:4328:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 4328 | if (atm1 >= I->NAtom || atm2 >= I->NAtom) { | ~~~~~^~~~~~~~~~~ layer2/ObjectMolecule.cpp: In member function ‘bool ObjectMolecule::atomHasAnyCoordinates(size_t) const’: layer2/ObjectMolecule.cpp:11713:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 11713 | for (size_t i = 0; i < NCSet; ++i) { | ~~^~~~~~~ In file included from /usr/include/c++/14/cassert:44, from layer0/Field.h:24, from layer0/Isosurf.h:24, from layer2/RepMesh.cpp:28: layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’: layer2/RepMesh.cpp:970:27: required from here 155 | #define Ffloat3p(f, a, b, c) ((f)->ptr(a, b, c)) | ~~~~~~~~~~~~~~~^~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /usr/include/c++/14/memory:78, from layer0/os_python.h:23, from layer2/RepMesh.cpp:17: In member function ‘std::unique_ptr >::~unique_ptr()’, inlined from ‘pymol::cache_ptr >::~cache_ptr()’ at include/pymol/memory.h:89:7, inlined from ‘Isofield::~Isofield()’ at layer0/Isosurf.h:30:8, inlined from ‘RepMeshNew(CoordSet*, int)’ at layer2/RepMesh.cpp:1053:5: /usr/include/c++/14/bits/unique_ptr.h:397:19: warning: ‘field’ may be used uninitialized [-Wmaybe-uninitialized] 397 | if (__ptr != nullptr) | ~~~~~~^~~~~~~~~~ layer2/RepMesh.cpp: In function ‘RepMeshNew(CoordSet*, int)’: layer2/RepMesh.cpp:715:13: note: ‘field’ was declared here 715 | Isofield *field; | ^~~~~ layer2/ObjectMolecule.cpp: In function ‘ObjectMoleculeMOLStr2CoordSet(PyMOLGlobals*, char const*, AtomInfoType**, char const**) [clone .constprop.0]’: layer2/ObjectMolecule.cpp:7579:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=] 7579 | " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G) | ^~ ~~~~~~~ In file included from layer1/Ortho.h:32, from layer2/ObjectMolecule.cpp:31: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 34 and 289 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMolecule.cpp:7627:16: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 1023 [-Wstringop-truncation] 7627 | strncpy(atInfo[a].elem, cc, cElemNameLen); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule.cpp: In function ‘ObjectMoleculeLoadRSTFile(PyMOLGlobals*, ObjectMolecule*, char const*, int, int, char)’: layer2/ObjectMolecule.cpp:1382:10: warning: ‘buffer’ may be used uninitialized [-Wmaybe-uninitialized] 1382 | mfree(buffer); layer2/ObjectMolecule.cpp:1279:9: note: ‘buffer’ was declared here 1279 | char *buffer, *p; | ^~~~~~ layer2/ObjectMolecule.cpp: In member function ‘ObjectMolecule::update()’: layer2/ObjectMolecule.cpp:10605:82: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=] 10605 | " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n", | ^~ layer0/Feedback.h:274:15: note: ‘snprintf’ output between 68 and 333 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMolecule.cpp: In function ‘ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, float const*, int, int)’: layer2/ObjectMolecule.cpp:10731:43: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] 10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ^~ 10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0); | ~~~~~~ layer2/ObjectMolecule.cpp:10731:21: note: directive argument in the range [-2147483647, 2147483647] 10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule.cpp:10731:14: note: ‘sprintf’ output between 78 and 2036 bytes into a destination of size 1024 10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/RepRibbon.cpp: In function ‘RepRibbonNew(CoordSet*, int)’: layer2/RepRibbon.cpp:378:15: warning: ‘*_701’ may be used uninitialized [-Wmaybe-uninitialized] 378 | *(v1++) = *(v++); /* first segment */ | ^~~~~~ layer2/RepRibbon.cpp:379:15: warning: ‘MEM[(float *)_701 + 4B]’ may be used uninitialized [-Wmaybe-uninitialized] 379 | *(v1++) = *(v++); | ^~~~~~ layer2/RepRibbon.cpp:380:15: warning: ‘MEM[(float *)_701 + 8B]’ may be used uninitialized [-Wmaybe-uninitialized] 380 | *(v1++) = *(v++); | ^~~~~~ In function ‘ObjectMoleculeXYZStr2CoordSet(PyMOLGlobals*, char const*, AtomInfoType**, char const**)’, inlined from ‘ObjectMoleculeReadStr(PyMOLGlobals*, ObjectMolecule*, char const**, cLoadType_t, int, int, int, int, char*, short, _OVLexicon*)’ at layer2/ObjectMolecule.cpp:8551:43: layer2/ObjectMolecule.cpp:2898:16: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 1023 [-Wstringop-truncation] 2898 | strncpy(ai->elem, cc, cElemNameLen); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule2.cpp: In function ‘bool ObjectMoleculeConnect(ObjectMolecule*, int&, pymol::vla&, CoordSet*, int, int, bool)’: layer2/ObjectMolecule2.cpp:3750:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 3750 | for (unsigned i = 0; i < cs->NIndex; ++i) { | ~~^~~~~~~~~~~~ layer2/ObjectMolecule2.cpp: In lambda function: layer2/ObjectMolecule2.cpp:3779:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 3779 | if (i <= j && !symop) | ~~^~~~ layer2/ObjectMolecule2.cpp: In function ‘bool ObjectMoleculeConnect(ObjectMolecule*, int&, pymol::vla&, CoordSet*, int, int, bool)’: layer2/ObjectMolecule2.cpp:3884:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 3884 | for (unsigned i = 0; i < cs->NIndex; ++i) { | ~~^~~~~~~~~~~~ layer2/ObjectMolecule2.cpp:3900:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 3900 | for (unsigned a = 0; a < cs->NTmpBond; ++a) { | ~~^~~~~~~~~~~~~~ layer2/ObjectMolecule2.cpp:3950:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 3950 | for (unsigned a = 0; a < cs->NTmpLinkBond; ++a) { | ~~^~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule2.cpp: In function ‘ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, char const*, char const*, char const*, char const*, char const*, char const*, float, int, float, float, char const*, float const*, int, int, int, int)’: layer2/ObjectMolecule2.cpp:335:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] 335 | " ObjMol: created %s/%s/%s/%s`%d%c/%s\n", | ^~ In file included from /usr/include/stdio.h:970, from /usr/include/python3.13/Python.h:37, from layer0/os_python.h:34, from layer2/ObjectMolecule2.cpp:24: In function ‘snprintf’, inlined from ‘ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, char const*, char const*, char const*, char const*, char const*, char const*, float, int, float, float, char const*, float const*, int, int, int, int)’ at layer2/ObjectMolecule2.cpp:334:7: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 26 and 291 bytes into a destination of size 255 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/RepSurface.cpp: In function ‘void RepSurfaceSmoothEdges(RepSurface*)’: layer2/RepSurface.cpp:4403:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4403 | for (auto j = 0; j < edges[i].size(); j += 3) { | ~~^~~~~~~~~~~~~~~~~ layer2/RepSurface.cpp:4415:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4415 | for (auto j = 0; j < edges[i].size(); j += 3) { | ~~^~~~~~~~~~~~~~~~~ layer2/RepSurface.cpp:4426:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4426 | for (auto i = 0; i < unique_edges.size(); i += 2) { | ~~^~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule3.cpp: In function ‘std::vector ObjectMoleculeGetMolMappingVec(const ObjectMolecule&)’: layer2/ObjectMolecule3.cpp:42:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 42 | for (size_t b = 0; b < objmol.NBond; ++b) { | ~~^~~~~~~~~~~~~~ layer2/ObjectMolecule3.cpp: In function ‘void ObjectMoleculePBCUnwrap(ObjectMolecule&, bool)’: layer2/ObjectMolecule3.cpp:151:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 151 | for (unsigned atm = 0; atm != objmol.NAtom; ++atm) { | ~~~~^~~~~~~~~~~~~~~ layer2/ObjectSlice.cpp: In function ‘PyObject* ObjectSliceAllStatesAsPyList(ObjectSlice*)’: layer2/ObjectSlice.cpp:78:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 78 | for(a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::invalidate(cRep_t, cRepInv_t, int)’: layer2/ObjectSlice.cpp:210:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 210 | for(a = 0; a < State.size(); a++) { | ~~^~~~~~~~~~~~~~ layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::update()’: layer2/ObjectSlice.cpp:633:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 633 | for(a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectSlice.cpp: In function ‘void ObjectSliceDrag(ObjectSlice*, int, int, float*, float*, float*)’: layer2/ObjectSlice.cpp:679:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 679 | if(state < I->State.size()) | ~~~~~~^~~~~~~~~~~~~~~~~ layer2/ObjectSlice.cpp: In function ‘int ObjectSliceGetVertex(ObjectSlice*, int, int, float*)’: layer2/ObjectSlice.cpp:750:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 750 | if(state < I->State.size()) | ~~~~~~^~~~~~~~~~~~~~~~~ layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::render(RenderInfo*)’: layer2/ObjectSlice.cpp:925:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 925 | if(state < I->State.size()) | ~~~~~~^~~~~~~~~~~~~~~~~ layer2/ObjectSlice.cpp:967:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 967 | if(cur_state >= I->State.size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ layer2/ObjectSlice.cpp:981:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 981 | if(state < I->State.size()) | ~~~~~~^~~~~~~~~~~~~~~~~ layer2/ObjectSlice.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1226 | if(cur_state >= I->State.size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ layer2/ObjectSlice.cpp: In function ‘ObjectSliceState* ObjectSliceStateGetActive(ObjectSlice*, int)’: layer2/ObjectSlice.cpp:1244:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1244 | if(state < I->State.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~ layer2/ObjectSlice.cpp: In function ‘ObjectSlice* ObjectSliceFromMap(PyMOLGlobals*, ObjectSlice*, ObjectMap*, int, int)’: layer2/ObjectSlice.cpp:1285:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 1285 | if(I->State.size() <= state) { | ~~~~~~~~~~~~~~~~^~~~~~~~ layer2/ObjectSlice.cpp: In function ‘void ObjectSliceRecomputeExtent(ObjectSlice*)’: layer2/ObjectSlice.cpp:1362:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1362 | for(a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectSlice.cpp: In member function ‘ObjectSlice::update()’: layer2/ObjectSlice.cpp:639:42: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] 639 | "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectSlice.cpp:34: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 51 and 306 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSlice.cpp:650:39: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=] 650 | " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G); | ^~ layer0/Feedback.h:274:15: note: ‘snprintf’ output between 28 and 283 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSurface.cpp: In function ‘PyObject* ObjectSurfaceAllStatesAsPyList(ObjectSurface*)’: layer2/ObjectSurface.cpp:83:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 83 | for(int a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectSurface.cpp: In function ‘void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)’: layer2/ObjectSurface.cpp:236:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 236 | if(state < I->State.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~ layer2/ObjectSurface.cpp: In member function ‘virtual void ObjectSurface::invalidate(cRep_t, cRepInv_t, int)’: layer2/ObjectSurface.cpp:281:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 281 | for(int a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectSurface.cpp: In function ‘int ObjectSurfaceInvalidateMapName(ObjectSurface*, const char*, const char*)’: layer2/ObjectSurface.cpp:311:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 311 | for(int a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectSurface.cpp: In function ‘ObjectSurface* ObjectSurfaceFromBox(PyMOLGlobals*, ObjectSurface*, ObjectMap*, int, int, float*, float*, float, cIsosurfaceMode, float, pymol::vla&&, cIsosurfaceSide, int)’: layer2/ObjectSurface.cpp:1029:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 1029 | if(I->State.size() <= state) { | ~~~~~~~~~~~~~~~~^~~~~~~~ layer2/ObjectSurface.cpp: In function ‘int ObjectSurfaceSetLevel(ObjectSurface*, float, int, int)’: layer2/ObjectSurface.cpp:1125:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1125 | for(int a = 0; a < I->State.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer2/ObjectSurface.cpp: In function ‘ObjectSurfaceDump(ObjectSurface*, char const*, int, int)’: layer2/ObjectSurface.cpp:268:30: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] 268 | " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G); | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectSurface.cpp:35: layer0/Feedback.h:274:15: note: ‘snprintf’ output 34 or more bytes (assuming 289) into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSurface.cpp: In member function ‘ObjectSurface::update()’: layer2/ObjectSurface.cpp:493:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] 493 | " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G); | ^~ layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ In file included from layer1/PyMOLObject.h:26, from layer2/ObjectMolecule.h:24, from layer2/SideChainHelper.h:9, from layer2/SideChainHelper.cpp:10: In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’, inlined from ‘SettingUniqueGetIfDefined(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39, inlined from ‘AtomSettingGetIfDefined(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33, inlined from ‘AtomSettingGetWD(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36, inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:47:26: layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized] 436 | int i = *out; | ^~~~ In file included from layer2/ObjectMolecule.h:25: layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’: layer2/AtomInfo.h:505:5: note: ‘out’ was declared here 505 | V out; | ^~~ In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’, inlined from ‘SettingUniqueGetIfDefined(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39, inlined from ‘AtomSettingGetIfDefined(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33, inlined from ‘AtomSettingGetWD(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36, inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:49:26: layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized] 436 | int i = *out; | ^~~~ layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’: layer2/AtomInfo.h:505:5: note: ‘out’ was declared here 505 | V out; | ^~~ In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’, inlined from ‘SettingUniqueGetIfDefined(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39, inlined from ‘AtomSettingGetIfDefined(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33, inlined from ‘AtomSettingGetWD(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36, inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:55:26: layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized] 436 | int i = *out; | ^~~~ layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’: layer2/AtomInfo.h:505:5: note: ‘out’ was declared here 505 | V out; | ^~~ In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’, inlined from ‘SettingUniqueGetIfDefined(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39, inlined from ‘AtomSettingGetIfDefined(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33, inlined from ‘AtomSettingGetWD(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36, inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:57:26: layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized] 436 | int i = *out; | ^~~~ layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’: layer2/AtomInfo.h:505:5: note: ‘out’ was declared here 505 | V out; | ^~~ layer3/AtomIterators.cpp: In member function ‘virtual bool SeleAtomIterator::next()’: layer3/AtomIterators.cpp:61:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 61 | while ((++a) < I->Table.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~ layer3/AtomIterators.cpp: In member function ‘virtual bool SeleCoordIterator::next()’: layer3/AtomIterators.cpp:129:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 129 | for (a++; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Editor.cpp: In function ‘pymol::Result<> EditorSelect(PyMOLGlobals*, const char*, const char*, const char*, const char*, int, int, int)’: layer3/Editor.cpp:776:7: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 776 | int result = false; | ^~~~~~ layer3/Editor.cpp: In function ‘EditorDefineExtraPks(PyMOLGlobals*)’: layer3/Editor.cpp:335:29: warning: ‘%s’ directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=] 335 | sprintf(buffer, "(byres %s)", name); | ^~ ~~~~ layer3/Editor.cpp:335:12: note: ‘sprintf’ output between 9 and 264 bytes into a destination of size 256 335 | sprintf(buffer, "(byres %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:337:31: warning: ‘%s’ directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=] 337 | sprintf(buffer, "(bychain %s)", name); | ^~ ~~~~ layer3/Editor.cpp:337:12: note: ‘sprintf’ output between 11 and 266 bytes into a destination of size 256 337 | sprintf(buffer, "(bychain %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:339:32: warning: ‘%s’ directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=] 339 | sprintf(buffer, "(byobject %s)", name); | ^~ ~~~~ layer3/Editor.cpp:339:12: note: ‘sprintf’ output between 12 and 267 bytes into a destination of size 256 339 | sprintf(buffer, "(byobject %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp: In function ‘EditorPrepareDrag(PyMOLGlobals*, pymol::CObject*, int, int, int, int)’: layer3/Editor.cpp:1933:29: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] 1933 | " Editor: grabbing (%s).", name ENDFB(G); | ^~ ~~~~ In file included from layer1/Ortho.h:32, from layer1/ButMode.h:20, from layer3/Editor.cpp:28: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 22 and 277 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveIsosurfaceEtc(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int, int, int)’: layer3/Executive.cpp:986:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 986 | if(map_state >= mapObj->State.size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveIsomeshEtc(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int, int, float)’: layer3/Executive.cpp:1132:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1132 | if(map_state >= mapObj->State.size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveVolume(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int)’: layer3/Executive.cpp:1305:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1305 | if(map_state >= mapObj->State.size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/cassert:44, from /usr/include/glm/detail/func_exponential.inl:8, from /usr/include/glm/exponential.hpp:110, from /usr/include/glm/detail/func_geometric.inl:1, from /usr/include/glm/geometric.hpp:116, from /usr/include/glm/detail/func_matrix.inl:1, from /usr/include/glm/matrix.hpp:161, from /usr/include/glm/detail/type_mat2x2.inl:1, from /usr/include/glm/detail/type_mat2x2.hpp:176, from /usr/include/glm/ext/matrix_double2x2.hpp:5, from /usr/include/glm/mat2x2.hpp:5, from /usr/include/glm/glm.hpp:120, from layer3/Executive.cpp:114: layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSmooth(PyMOLGlobals*, const char*, int, int, int, int, int, int, float, bool)’: layer3/Executive.cpp:6095:17: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘int’ [-Wsign-compare] 6095 | assert(n_atom == SelectorCountAtoms(G, sele, cStateAll)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:6155:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 6155 | for (int c = 0; c < n_atom; ++c) { | ~~^~~~~~~~ layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveMapSet(PyMOLGlobals*, const char*, int, const char*, int, int, int, int)’: layer3/Executive.cpp:6325:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 6325 | if(obj->State.size() > max_n_state) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ layer3/Executive.cpp:6436:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6436 | if(src_state < obj->State.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function ‘float ExecutiveRMSPairs(PyMOLGlobals*, const std::vector&, int, bool)’: layer3/Executive.cpp:11035:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 11035 | for(a = 0; a < pairs; a++) { | ~~^~~~~~~ layer3/Executive.cpp:11040:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 11040 | if(a < (pairs - 1)) | ~~^~~~~~~~~~~~~ layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveColor(PyMOLGlobals*, const char*, const char*, int, int)’: layer3/Executive.cpp:12401:7: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable] 12401 | int ok = false; | ^~ layer3/Executive.cpp: In function ‘void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)’: layer3/Executive.cpp:14066:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 14066 | for (unsigned idx = 0; idx < cs->NIndex; ++idx) { | ~~~~^~~~~~~~~~~~ layer3/Executive.cpp:14093:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 14093 | for (unsigned atm = 0; atm < new_obj->NAtom; ++atm) { | ~~~~^~~~~~~~~~~~~~~~ In file included from layer3/Executive.cpp:51: layer3/Executive.cpp: In lambda function: layer0/ListMacros.h:100:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 100 | else \ | ^~~~ layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’ 141 | ListDetach(List,copy,Link,ElemType); \ | ^~~~~~~~~~ layer3/Executive.cpp:14194:7: note: in expansion of macro ‘ListDelete’ 14194 | ListDelete(I->Spec, rec, next, SpecRec); /* NOTE: order N in list length! TO FIX */ | ^~~~~~~~~~ layer0/ListMacros.h:102:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 102 | (Elem)->Link = NULL; \ | ^ layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’ 141 | ListDetach(List,copy,Link,ElemType); \ | ^~~~~~~~~~ layer3/Executive.cpp:14194:7: note: in expansion of macro ‘ListDelete’ 14194 | ListDelete(I->Spec, rec, next, SpecRec); /* NOTE: order N in list length! TO FIX */ | ^~~~~~~~~~ layer3/Executive.cpp: In lambda function: layer0/ListMacros.h:100:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 100 | else \ | ^~~~ layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’ 141 | ListDetach(List,copy,Link,ElemType); \ | ^~~~~~~~~~ layer3/Executive.cpp:14206:7: note: in expansion of macro ‘ListDelete’ 14206 | ListDelete(I->Spec, rec, next, SpecRec); /* NOTE: order N in list length! TO FIX */ | ^~~~~~~~~~ layer0/ListMacros.h:102:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 102 | (Elem)->Link = NULL; \ | ^ layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’ 141 | ListDetach(List,copy,Link,ElemType); \ | ^~~~~~~~~~ layer3/Executive.cpp:14206:7: note: in expansion of macro ‘ListDelete’ 14206 | ListDelete(I->Spec, rec, next, SpecRec); /* NOTE: order N in list length! TO FIX */ | ^~~~~~~~~~ layer3/Executive.cpp: In member function ‘virtual int CExecutive::click(int, int, int, int)’: layer3/Executive.cpp:14873:68: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 14873 | if(((panel->is_group) && (((xx) - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:14874:69: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 14874 | ((!panel->is_group) && (((xx) - 1) / DIP2PIXEL(8)) > panel->nest_level)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In member function ‘virtual int CExecutive::release(int, int, int, int)’: layer3/Executive.cpp:15162:65: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 15162 | (((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) || | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:15163:66: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 15163 | ((!panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > panel->nest_level))) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In member function ‘virtual int CExecutive::drag(int, int, int)’: layer3/Executive.cpp:15304:70: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 15304 | if(((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) || | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:15305:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 15305 | ((!panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > panel->nest_level)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:15340:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 15340 | if(!((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1))) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from layer0/OOMac.h:22, from layer3/Executive.cpp:37: layer3/Executive.cpp: In function ‘void ExecutiveFree(PyMOLGlobals*)’: layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CExecutive’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}} layer3/Executive.cpp:16294:3: note: in expansion of macro ‘DeleteP’ 16294 | DeleteP(G->Executive); | ^~~~~~~ layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSliceNew(PyMOLGlobals*, const char*, const char*, int, int)’: layer3/Executive.cpp:16607:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 16607 | if(map_state >= mapObj->State.size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from layer3/Executive.h:38, from layer3/Executive.cpp:38: layer0/TrackerList.h: In instantiation of ‘pymol::TrackerAdapter::TrackerAdapterIterator::TrackerAdapterIterator(CTracker*, int) [with bool IsConst = false; T = SpecRec]’: layer0/TrackerList.h:99:29: required from ‘pymol::TrackerAdapter::iterator pymol::TrackerAdapter::begin() [with T = SpecRec; iterator = pymol::TrackerAdapter::TrackerAdapterIterator]’ 99 | iterator begin() { return iterator(m_tracker, m_list_id); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:202:62: required from here 202 | for (auto& rec : ExecutiveGetSpecRecsFromPattern(G, pattern)) { | ^ layer0/TrackerList.h:80:15: warning: ‘pymol::TrackerAdapter::TrackerAdapterIterator::m_tracker’ will be initialized after [-Wreorder] 80 | CTracker* m_tracker; | ^~~~~~~~~ layer0/TrackerList.h:79:9: warning: ‘int pymol::TrackerAdapter::TrackerAdapterIterator::m_iter_id’ [-Wreorder] 79 | int m_iter_id = -1; | ^~~~~~~~~ layer0/TrackerList.h:35:14: warning: when initialized here [-Wreorder] 35 | explicit TrackerAdapterIterator(CTracker* tracker, int list_id) | ^~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function ‘ExecutiveRemoveAtoms(PyMOLGlobals*, char const*, int)’: layer3/Executive.cpp:9007:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=] 9007 | " Remove: eliminated %d atoms in model \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 42 and 307 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp: In function ‘ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, char const*, char const*, char const*, int, int, int)’: layer3/Executive.cpp:11424:28: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11424 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~ 11425 | name, nSet, obj->Name ENDF(G); | ~~~~ layer3/Executive.cpp:11424:17: note: directive argument in the range [1, 2147483647] 11424 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 560 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp: In function ‘ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, char const*, int, int, int)’: layer3/Executive.cpp:11505:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11505 | " Getting: %s for %d bonds in object \"%s\".\n", | ^~ 11506 | name, nSet, obj->Name ENDF(G); | ~~~~ layer3/Executive.cpp:11505:15: note: directive argument in the range [1, 2147483647] 11505 | " Getting: %s for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: ‘snprintf’ output between 38 and 556 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp: In function ‘ExecutiveSetBondSetting(PyMOLGlobals*, int, _object*, char const*, char const*, int, int, int)’: layer3/Executive.cpp:11605:62: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=] 11605 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~ layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 306) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp: In function ‘ExecutiveUnsetBondSetting(PyMOLGlobals*, int, char const*, char const*, int, int, int)’: layer3/Executive.cpp:11684:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11684 | " Setting: %s unset for %d bonds in object \"%s\".\n", | ^~ 11685 | name, nSet, rec->obj->Name ENDF(G); | ~~~~ layer3/Executive.cpp:11684:15: note: directive argument in the range [1, 2147483647] 11684 | " Setting: %s unset for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: ‘snprintf’ output between 44 and 562 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp: In function ‘ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, char const*, pymol::CObject*, int, int, int)’: layer3/Executive.cpp:12226:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12226 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 12227 | name, value2, obj->Name, state + 1 ENDF(G); | ~~~~ layer3/Executive.cpp:12226:19: note: directive argument in the range [1, 2147483647] 12226 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12218:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12218 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 12219 | name, value2, obj->Name ENDF(G); | ~~~~ layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12197:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12197 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~ ~~~~ layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp: In function ‘ExecutiveSetSettingFromString(PyMOLGlobals*, int, char const*, char const*, int, int, int)’: layer3/Executive.cpp:12129:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12129 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ 12130 | name, op.i4, rec->obj->Name ENDF(G); | ~~~~ layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 561 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12097:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12097 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~ 12098 | name, value2, nObj, state + 1 ENDF(G); | ~~~~ layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647] 12097 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647] layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1338 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12094:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G); | ^~ ~~~~ layer3/Executive.cpp:12094:21: note: directive argument in the range [1, 2147483647] 12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1320 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12161:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12161 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 12162 | name, value2, rec->obj->Name, state + 1 ENDF(G); | ~~~~ layer3/Executive.cpp:12161:25: note: directive argument in the range [1, 2147483647] 12161 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12153:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12153 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 12154 | name, value2, rec->obj->Name ENDF(G); | ~~~~ layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12057:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12057 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~ ~~~~ layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/PlugIOManager.cpp: In function ‘ObjectMap* PlugIOManagerLoadVol(PyMOLGlobals*, ObjectMap*, const char*, int, int, const char*)’: layer3/PlugIOManager.cpp:416:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 416 | if(obj->State.size() <= state) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/c++/14/cassert:44, from layer0/Field.h:24, from layer0/Isosurf.h:24, from layer2/ObjectMap.h:25, from layer3/PlugIOManager.h:23, from layer3/PlugIOManager.cpp:24: layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’: layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’ 114 | return *ptr(pos...); | ~~~~~~^~~~~~~~ layer3/PlugIOManager.cpp:541:21: required from here 156 | #define Ffloat3(f, a, b, c) ((f)->get(a, b, c)) | ~~~~~~~~~~~~~~~^~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ layer3/PlugIOManager.cpp: In function ‘PlugIOManagerLoad’: layer3/PlugIOManager.cpp:946:65: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=] 946 | " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G); | ^~ In file included from /usr/include/stdio.h:970, from /usr/include/python3.13/Python.h:37, from layer0/os_python.h:34, from layer3/PlugIOManager.cpp:20: In function ‘snprintf’, inlined from ‘PlugIOManagerLoad’ at layer3/PlugIOManager.cpp:945:7: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 58 and 313 bytes into a destination of size 255 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function ‘ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, CSymmetry const&, bool)’: layer3/Executive.cpp:5951:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=] 5951 | " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G); | ^~ layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 311 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5942:46: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=] 5942 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__, | ^~ layer0/Feedback.h:274:15: note: ‘snprintf’ output between 84 and 339 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/RingFinder.cpp: In member function ‘void AbstractRingFinder::recursion(int, int)’: layer3/RingFinder.cpp:23:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 23 | } else if (depth < m_indices.size() - 1) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function ‘ExecutiveSetSetting(PyMOLGlobals*, int, _object*, pymol::zstring_view, int, int, int)’: layer3/Executive.cpp:11877:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=] 11877 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 297) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11788:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11788 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~ 11789 | name, value, nObj, state + 1 ENDF(G); | ~~~~~ layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647] 11788 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647] layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1084) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11785:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G); | ^~ ~~~~~ layer3/Executive.cpp:11785:21: note: directive argument in the range [1, 2147483647] 11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1066) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11909:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11909 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 11910 | name, value, rec->obj->Name, state + 1 ENDF(G); | ~~~~~ layer3/Executive.cpp:11909:25: note: directive argument in the range [1, 2147483647] 11909 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1330) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11902:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11902 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 11903 | name, value, rec->obj->Name ENDF(G); | ~~~~~ layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1312) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11744:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11744 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G); | ^~ ~~~~~ layer0/Feedback.h:282:53: note: ‘snprintf’ output 21 or more bytes (assuming 1044) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp: In function ‘ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)’: layer3/Executive.cpp:12338:68: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=] 12338 | " Setting: %s unset for %d atoms in object \"%s\".\n", | ^~ layer0/Feedback.h:282:53: note: ‘snprintf’ output 44 or more bytes (assuming 299) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12360:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] 12360 | " Setting: %s unset in object \"%s\", state %d.\n", | ^~ layer3/Executive.cpp:12360:25: note: directive argument in the range [1, 2147483647] 12360 | " Setting: %s unset in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: ‘snprintf’ output 41 or more bytes (assuming 305) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12354:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] 12354 | " Setting: %s unset in object \"%s\".\n", | ^~ layer0/Feedback.h:282:53: note: ‘snprintf’ output 32 or more bytes (assuming 287) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Seeker.cpp: In function ‘void SeekerRefresh(PyMOLGlobals*, std::vector&)’: layer3/Seeker.cpp:485:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 485 | for(int b = 0; b < nRow; b++) { | ~~^~~~~~ layer3/Seeker.cpp: In function ‘void SeekerUpdate(PyMOLGlobals*)’: layer3/Seeker.cpp:1150:23: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 1150 | if(row->len < min_pad) { | ~~~~~~~~~^~~~~~~~~ layer3/Seeker.cpp:1186:23: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 1186 | if(row->len < min_pad) { | ~~~~~~~~~^~~~~~~~~ layer3/Seeker.cpp: In lambda function: layer3/Seeker.cpp:1248:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1248 | for(int i = 0; i < str_size; i++){ | ~~^~~~~~~~~~ layer3/Seeker.cpp: In function ‘void SeekerUpdate(PyMOLGlobals*)’: layer3/Seeker.cpp:1930:27: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 1930 | if(row->ext_len < stop) | ~~~~~~~~~~~~~^~~~~~ In file included from layer0/vla.h:7, from layer1/Symmetry.h:26, from layer1/PyMOLObject.h:27, from layer1/Seq.h:21, from layer3/Seeker.cpp:26: layer3/Seeker.cpp: In function ‘void SeekerFree(PyMOLGlobals*)’: layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CSeeker’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}} layer3/Seeker.cpp:1964:3: note: in expansion of macro ‘DeleteP’ 1964 | DeleteP(G->Seeker); | ^~~~~~~ layer3/Executive.cpp: In function ‘ExecutiveBond(PyMOLGlobals*, char const*, char const*, int, int, int, pymol::zstring_view)’: layer3/Executive.cpp:9358:53: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=] 9358 | " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name | ^~ layer0/Feedback.h:274:15: note: ‘snprintf’ output between 35 and 300 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9371:67: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=] 9371 | " Valence: %d bond valences adjusted in model \"%s\".\n", cnt, | ^~ layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 314 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9383:59: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=] 9383 | " Unbond: %d bonds removed from model \"%s\".\n", | ^~ layer0/Feedback.h:274:15: note: ‘snprintf’ output between 41 and 306 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp: In function ‘ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)’: layer3/Executive.cpp:14447:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] 14447 | " Executive-Warning: name \"%s\" collides with a selection language keyword.\n", | ^~ layer0/Feedback.h:274:15: note: ‘snprintf’ output between 73 and 328 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:14442:36: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] 14442 | " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name | ^~ layer0/Feedback.h:274:15: note: ‘snprintf’ output between 61 and 316 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:14473:11: warning: ‘strcpy’ offset 0 is out of the bounds [0, 0] [-Warray-bounds=] 14473 | strcpy(rec->name, obj->Name); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function ‘ExecutiveCopy(PyMOLGlobals*, char const*, char const*, int)’: layer3/Executive.cpp:9665:25: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] 9665 | " Executive: object %s created.\n", oDst->Name ENDFB(G); | ^~ layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp: In function ‘ExecutiveSpectrum(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, float, float, int, int, pymol::zstring_view, int, int, int)’: layer3/Executive.cpp:4764:24: warning: ‘strncpy’ specified bound 4 equals destination size [-Wstringop-truncation] 4764 | strncpy(value_s, raw_ptr, sizeof(value_e)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In member function ‘virtual bool SelectorAtomIterator::next()’: layer3/Selector.cpp:185:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 185 | if ((++a) >= selector->Table.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘bool SelectorIsSelectionDiscrete(PyMOLGlobals*, SelectorID_t, bool)’: layer3/Selector.cpp:1028:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1028 | for(int a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorClassifyAtoms(PyMOLGlobals*, int, int, ObjectMolecule*)’: layer3/Selector.cpp:1082:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1082 | while(a < I->Table.size()) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:1106:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1106 | while(a1 < I->Table.size()) { | ~~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘const char* SelectorGetNameFromIndex(PyMOLGlobals*, SelectorID_t)’: layer3/Selector.cpp:1519:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1519 | for(int a = 1; a < I->Info.size(); a++) { | ~~^~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’: layer3/Selector.cpp:1653:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1653 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:1680:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1680 | while(a1 < I->Table.size()) { | ~~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:1874:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1874 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘PyObject* SelectorColorectionGet(PyMOLGlobals*, const char*)’: layer3/Selector.cpp:2687:18: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2687 | for(b = 0; b < n_used; b++) { | ~~^~~~~~~~ layer3/Selector.cpp:2703:16: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2703 | for(a = 0; a < n_used; a++) { | ~~^~~~~~~~ layer3/Selector.cpp:2715:18: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2715 | for(b = 0; b < n_used; b++) { | ~~^~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorColorectionApply(PyMOLGlobals*, PyObject*, const char*)’: layer3/Selector.cpp:2763:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘unsigned int’} [-Wsign-compare] 2763 | for(b = 0; b < n_used; b++) { /* update selection indices */ | ~~^~~~~~~~ layer3/Selector.cpp:2768:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2768 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:2772:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘unsigned int’} [-Wsign-compare] 2772 | for(b = 0; b < n_used; b++) { | ~~^~~~~~~~ layer3/Selector.cpp: In function ‘PyObject* SelectorSecretsAsPyList(PyMOLGlobals*)’: layer3/Selector.cpp:2873:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2873 | for(int a = 0; a < I->Info.size(); a++) { | ~~^~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘PyObject* SelectorAsPyList(PyMOLGlobals*, SelectorID_t)’: layer3/Selector.cpp:2952:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2952 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorCountStates(PyMOLGlobals*, int)’: layer3/Selector.cpp:3446:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3446 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorCheckIntersection(PyMOLGlobals*, int, int)’: layer3/Selector.cpp:3470:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3470 | for(int a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorCountAtoms(PyMOLGlobals*, int, int)’: layer3/Selector.cpp:3488:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3488 | for(int a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘void SelectorSetDeleteFlagOnSelectionInObject(PyMOLGlobals*, int, ObjectMolecule*, signed char)’: layer3/Selector.cpp:3503:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3503 | for(int a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int* SelectorGetIndexVLAImpl(PyMOLGlobals*, CSelector*, SelectorID_t)’: layer3/Selector.cpp:3589:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3589 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘void SelectorLogSele(PyMOLGlobals*, const char*)’: layer3/Selector.cpp:3648:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3648 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘ObjectMolecule* SelectorGetSingleObjectMolecule(PyMOLGlobals*, SelectorID_t)’: layer3/Selector.cpp:3813:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3813 | for (a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘ObjectMolecule* SelectorGetFirstObjectMolecule(PyMOLGlobals*, SelectorID_t)’: layer3/Selector.cpp:3843:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3843 | for (a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘ObjectMolecule** SelectorGetObjectMoleculeVLA(PyMOLGlobals*, SelectorID_t)’: layer3/Selector.cpp:3867:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3867 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorSubdivide(PyMOLGlobals*, const char*, SelectorID_t, SelectorID_t, SelectorID_t, SelectorID_t, const char*, const char*, int*)’: layer3/Selector.cpp:4266:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4266 | for(a = 0; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorGetSeleNCSet(PyMOLGlobals*, SelectorID_t)’: layer3/Selector.cpp:4570:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4570 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorGetArrayNCSet(PyMOLGlobals*, const sele_array_t&, int)’: layer3/Selector.cpp:4600:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4600 | for(a = start; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorMapMaskVDW(PyMOLGlobals*, int, ObjectMapState*, float, int)’: layer3/Selector.cpp:4761:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4761 | for(a = 0; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorMapGaussian(PyMOLGlobals*, int, ObjectMapState*, float, int, int, int, int, float)’: layer3/Selector.cpp:5121:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5121 | for(a = 0; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:5165:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5165 | for(a = 0; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorMapCoulomb(PyMOLGlobals*, int, ObjectMapState*, float, int, int, int, float)’: layer3/Selector.cpp:5373:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5373 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorCreateObjectMolecule(PyMOLGlobals*, SelectorID_t, const char*, int, int, int, int, int, int, int)’: layer3/Selector.cpp:6062:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 6062 | if(ob) | ^~ layer3/Selector.cpp:6066:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 6066 | SelectorUpdateTable(G, source, -1); | ^~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp:6077:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6077 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In lambda function: layer3/Selector.cpp:6103:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6103 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:6133:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6133 | for(a = cNDummyModels; a < I->Obj.size(); a++) { /* find bonds wholly contained in the selection */ | ~~^~~~~~~~~~~~~~~ layer3/Selector.cpp:6159:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6159 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:6200:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6200 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:6224:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6224 | for(a = cNDummyAtoms; a < I->Table.size(); a++) /* any selected atoms in this state? */ | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorEmbedSelection(PyMOLGlobals*, const int*, pymol::zstring_view, ObjectMolecule*, int, int)’: layer3/Selector.cpp:6660:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6660 | for(a = start; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘sele_array_t SelectorSelectFromTagDict(PyMOLGlobals*, const std::unordered_map&)’: layer3/Selector.cpp:6755:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6755 | for(int a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/cassert:44, from layer0/Field.h:24, from layer0/Isosurf.h:24, from layer2/ObjectMap.h:25, from layer3/Selector.h:27, from layer3/Selector.cpp:39: layer3/Selector.cpp: In function ‘void SelectorUpdateTableSingleObject(PyMOLGlobals*, ObjectMolecule*, int, bool)’: layer3/Selector.cpp:6997:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6997 | assert(c == I->Table.size()); | ~~^~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘sele_array_t SelectorGetSeleArrayForAtomIndices(CSelector*, ObjectMolecule*, const int*, int, bool)’: layer3/Selector.cpp:7010:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 7010 | assert(I->Table.size() == cNDummyAtoms + obj->NAtom); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorModulate1(PyMOLGlobals*, EvalElem*, int)’: layer3/Selector.cpp:7293:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7293 | for (a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7316:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7316 | for(a = 0; ok && a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7379:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7379 | for(a = 0; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7393:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7393 | for(a = 0; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7416:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7416 | for(a = 0; ok && a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7457:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7457 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorSelect0(PyMOLGlobals*, EvalElem*)’: layer3/Selector.cpp:7490:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7490 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7501:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7501 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7506:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7506 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7513:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7513 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7517:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7517 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7521:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7521 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7525:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7525 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7529:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7529 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7538:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7538 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7555:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7555 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7560:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7560 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7565:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7565 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7570:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7570 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7575:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7575 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7580:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7580 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7585:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7585 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7589:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7589 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7593:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7593 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7598:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7598 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7603:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7603 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7610:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7610 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7626:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7626 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7632 | for(a = 0; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7641:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7641 | for(a = 0; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7653:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7653 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:7673:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7673 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘pymol::Result<> SelectorSelect1(PyMOLGlobals*, EvalElem*, int)’: layer3/Selector.cpp:8378:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 8378 | for(a = cNDummyModels; a < I->Obj.size(); a++) | ~~^~~~~~~~~~~~~~~ layer3/Selector.cpp:8388:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 8388 | else if(model > I->Obj.size()) | ~~~~~~^~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorSelect2(PyMOLGlobals*, EvalElem*, int)’: layer3/Selector.cpp:8470:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 8470 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:8474:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 8474 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:8522:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 8522 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:8533:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 8533 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:8544:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 8544 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:8555:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 8555 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:8570:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 8570 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:8581:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 8581 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:8592:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 8592 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:8603:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 8603 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:8618:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 8618 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:8629:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 8629 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:8640:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 8640 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:8651:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 8651 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorLogic1(PyMOLGlobals*, EvalElem*, int)’: layer3/Selector.cpp:9128:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 9128 | for(a = 0; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:9157:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 9157 | for(a = 0; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘int SelectorOperator22(PyMOLGlobals*, EvalElem*, int)’: layer3/Selector.cpp:9416:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const unsigned int’} [-Wsign-compare] 9416 | for(a = 0; a < table_size; a++) { | ~~^~~~~~~~~~~~ layer3/Selector.cpp:9438:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 9438 | for(a = 0; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:9468:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 9468 | for(a = 0; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:9473:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 9473 | for(a = cNDummyAtoms; a < I->Table.size(); a++) | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘pymol::Result > > SelectorEvaluate(PyMOLGlobals*, std::vector >&, int, int)’: layer3/Selector.cpp:9622:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 9622 | while(ok && c < word.size()) { | ~~^~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘DistSet* SelectorGetDistSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, float, float*)’: layer3/Selector.cpp:10213:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 10213 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘DistSet* SelectorGetAngleSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, int, int, float*, int*)’: layer3/Selector.cpp:10495:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 10495 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:10519:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 10519 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function ‘DistSet* SelectorGetDihedralSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, int, int, int, int, float*, int*)’: layer3/Selector.cpp:10724:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 10724 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer3/Selector.cpp:10801:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 10801 | for(a = cNDummyAtoms; a < I->Table.size(); a++) { | ~~^~~~~~~~~~~~~~~~~ layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’: layer3/Selector.cpp:4800:18: required from here 158 | #define Ffloat4p(f, a, b, c, d) ((f)->ptr(a, b, c, d)) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’: layer3/Selector.cpp:5309:20: required from here 155 | #define Ffloat3p(f, a, b, c) ((f)->ptr(a, b, c)) | ~~~~~~~~~~~~~~~^~~~~~~~~ layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 100 | assert(sizeof...(pos) <= n_dim()); | ~~~~~~~~~~~~~~~^~~~~~~~~~ layer3/Executive.cpp: In member function ‘CExecutive::drag(int, int, int)’: layer3/Executive.cpp:15471:55: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", | ^~ 15472 | order_input, (location == -2) ? "upper" : "current"); | ~~~~~~~~~~~ layer3/Executive.cpp:15471:26: note: ‘sprintf’ output between 32 and 1057 bytes into a destination of size 1024 15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 15472 | order_input, (location == -2) ? "upper" : "current"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function ‘ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)’: layer3/Executive.cpp:2259:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] 2259 | " Executive: adding '%s' to group '%s'.\n", rec.name, rec.group_name | ^~ layer0/Feedback.h:274:15: note: ‘snprintf’ output between 36 and 546 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp: In function ‘ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)’: layer3/Executive.cpp:3523:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=] 3523 | " Warning: Invalid characters in '%s' have been replaced or stripped\n", | ^~ 3524 | name ENDFB(G); | ~~~~ layer0/Feedback.h:274:15: note: ‘snprintf’ output between 67 and 322 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp: In function ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’: layer3/Executive.cpp:5070:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=] 5070 | " Executive: skipping unrecognized object \"%s\" of type %d.\n", | ^~ In function ‘ExecutiveSetNamedEntries(PyMOLGlobals*, _object*, int, int, int)’, inlined from ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’ at layer3/Executive.cpp:5696:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 321 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp: In function ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’: layer3/Executive.cpp:5095:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=] 5095 | "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G); | ^~ In function ‘ExecutiveSetNamedEntries(PyMOLGlobals*, _object*, int, int, int)’, inlined from ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’ at layer3/Executive.cpp:5696:38: layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 304 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Selector.cpp: In function ‘SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’: layer3/Selector.cpp:1722:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=] 1722 | " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n", | ^~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from layer3/Selector.cpp:20: In function ‘snprintf’, inlined from ‘SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’ at layer3/Selector.cpp:1721:19: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 59 and 324 bytes into a destination of size 255 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer3/ExecutivePython.cpp: In function ‘pymol::Result<> ExecutiveSetRawAlignment(PyMOLGlobals*, pymol::zstring_view, PyObject*, pymol::zstring_view, int, int)’: layer3/ExecutivePython.cpp:171:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 171 | for(size_t c = 0; c < n_cols; ++c) { | ~~^~~~~~~~ layer3/ExecutivePython.cpp:180:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 180 | for(size_t i = 0; i < n_idx; ++i) { | ~~^~~~~~~ In file included from layer2/AtomInfo.h:23, from layer3/MaeExportHelpers.h:11, from layer3/MaeExportHelpers.cpp:11: In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’, inlined from ‘SettingUniqueGetIfDefined(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39, inlined from ‘AtomSettingGetIfDefined(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33, inlined from ‘AtomSettingGetWD(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36, inlined from ‘SettingGet(PyMOLGlobals*, SeleCoordIterator const&, int)bool’ at layer3/MaeExportHelpers.cpp:24:26, inlined from ‘MaeExportGetAtomStyle(PyMOLGlobals*, SeleCoordIterator const&)’ at layer3/MaeExportHelpers.cpp:73:26: layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized] 436 | int i = *out; | ^~~~ layer2/AtomInfo.h: In function ‘MaeExportGetAtomStyle(PyMOLGlobals*, SeleCoordIterator const&)’: layer2/AtomInfo.h:505:5: note: ‘out’ was declared here 505 | V out; | ^~~ layer4/Cmd.cpp: In function ‘PyObject* CmdPushUndo(PyObject*, PyObject*)’: layer4/Cmd.cpp:2216:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2216 | if(ok) | ^~ layer4/Cmd.cpp:2218:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2218 | if(s0[0]) | ^~ layer4/Cmd.cpp: In function ‘PyObject* CmdGetMinMax(PyObject*, PyObject*)’: layer4/Cmd.cpp:4469:7: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable] 4469 | int ok = false; | ^~ In file included from layer4/Cmd.cpp:77: layer1/PConv.h: In instantiation of ‘PyObject* PConvToPyObject(const std::array<_Tp, _Nm>&) [with T = float; unsigned int N = 3; PyObject = _object]’: layer4/Cmd.cpp:380:27: required from ‘PyObject* APIResult(PyMOLGlobals*, pymol::Result&) [with T = std::array; PyObject = _object]’ 380 | return PConvToPyObject(res.result()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ layer4/Cmd.cpp:4034:19: required from here 4034 | return APIResult(G, result); | ~~~~~~~~~^~~~~~~~~~~ layer1/PConv.h:259:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 259 | for (int i = 0; i < N; ++i) { | ~~^~~ In file included from layer0/OOMac.h:22, from layer4/PopUp.cpp:23: layer4/PopUp.cpp: In function ‘void PopUpFree(Block*)’: layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CPopUp’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}} layer4/PopUp.cpp:401:3: note: in expansion of macro ‘DeleteP’ 401 | DeleteP(I); | ^~~~~~~ layer5/PyMOL.cpp: In function ‘PyMOLreturn_status Loader(CPyMOL*, const char*, const char*, int, const char*, const char*, int, int, int, int, int, int)’: layer5/PyMOL.cpp:1546:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1546 | if((stop - start) >= sizeof(WordType)) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from layer5/PyMOL.cpp:23: layer5/PyMOL.cpp: In function ‘void PyMOL_Stop(CPyMOL*)’: layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CMovie’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}} layer5/PyMOL.cpp:1987:3: note: in expansion of macro ‘DeleteP’ 1987 | DeleteP(G->Movie); | ^~~~~~~ ov/src/OVContext.cpp: In function ‘void OVContext_Del(OVContext*)’: ov/src/OVContext.cpp:21:13: warning: variable ‘heap’ set but not used [-Wunused-but-set-variable] 21 | OVHeap *heap = I->heap; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:62:16: warning: type ‘struct parm’ violates the C++ One Definition Rule [-Wodr] 62 | typedef struct parm { | ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:59:16: note: a different type is defined in another translation unit 59 | typedef struct parm { | ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:63:8: note: the first difference of corresponding definitions is field ‘title’ 63 | char title[85]; | ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:60:17: note: a field with different name is defined in another translation unit 60 | char ititl[81]; | ^ contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:33:3: warning: type ‘struct parmdata’ violates the C++ One Definition Rule [-Wodr] 33 | } parmdata; | ^ contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:32:3: note: a different type is defined in another translation unit 32 | } parmdata; | ^ contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:28:15: note: the first difference of corresponding definitions is field ‘prm’ 28 | parmstruct *prm; | ^ contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:28:13: note: a field with different name is defined in another translation unit 28 | ReadPARM *rp; | ^ layer0/Isosurf.cpp:47:16: warning: type ‘struct PointType’ violates the C++ One Definition Rule [-Wodr] 47 | typedef struct PointType { | ^ layer0/Tetsurf.cpp:46:3: note: a different type is defined in another translation unit 46 | } PointType; | ^ layer0/Isosurf.cpp:49:7: note: the first difference of corresponding definitions is field ‘NLink’ 49 | int NLink; | ^ layer0/Tetsurf.cpp:43:9: note: a field with different name is defined in another translation unit 43 | float Normal[3]; | ^ ov/src/OVOneToAny.cpp:15:3: warning: type ‘struct up_element’ violates the C++ One Definition Rule [-Wodr] 15 | } up_element; | ^ ov/src/OVOneToOne.cpp:15:3: note: a different type is defined in another translation unit 15 | } up_element; | ^ ov/src/OVOneToOne.cpp:14:25: note: the first difference of corresponding definitions is field ‘reverse_next’ 14 | ov_size forward_next, reverse_next; | ^ ov/src/OVOneToOne.cpp:15:3: note: a type with different number of fields is defined in another translation unit 15 | } up_element; | ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘recreate_command_line’: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1334 | line[0] = '\0'; | ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by ‘malloc’ 1333 | line = (char *) malloc (sizeof(char) * len); | ^ layer3/Executive.cpp: In function ‘ExecutiveManageObject’: layer3/Executive.cpp:14473:11: warning: ‘strcpy’ writing between 1 and 256 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 14473 | strcpy(rec->name, obj->Name); | ^ lto1: note: destination object is likely at address zero Exception ignored in: Traceback (most recent call last): File "/usr/lib/python3.13/multiprocessing/pool.py", line 271, in __del__ File "/usr/lib/python3.13/multiprocessing/queues.py", line 397, in put File "/usr/lib/python3.13/multiprocessing/connection.py", line 200, in send_bytes File "/usr/lib/python3.13/multiprocessing/connection.py", line 416, in _send_bytes AttributeError: 'NoneType' object has no attribute 'pack' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.bxFSIu + umask 022 + cd /builddir/build/BUILD/pymol-2.5.0-build + '[' /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/pymol-2.5.0-build + mkdir /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pymol-open-source-2.5.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT --prefix /usr --use-msgpackc=c++11 --use-openmp=yes --pymol-path=/usr/lib/python3.13/site-packages/pymol /usr/lib/python3.13/site-packages/chempy/sdf.py:23: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/site-packages/chempy/sdf.py:24: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/site-packages/pmg_tk/skins/normal/__init__.py:849: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pmg_tk/skins/normal/__init__.py:889: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/internal.py:252: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/internal.py:253: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/internal.py:254: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/internal.py:257: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/movie.py:818: SyntaxWarning: invalid escape sequence '\W' /usr/lib/python3.13/site-packages/pymol/moving.py:733: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/site-packages/pymol/parser.py:48: SyntaxWarning: invalid escape sequence '\[' /usr/lib/python3.13/site-packages/pymol/parser.py:408: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/viewing.py:899: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/viewing.py:912: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/viewing.py:914: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/plugins/installation.py:23: SyntaxWarning: invalid escape sequence '\p' /usr/lib/python3.13/site-packages/pymol/wizard/pseudoatom.py:13: SyntaxWarning: invalid escape sequence '\8' /usr/lib/python3.13/site-packages/chempy/sdf.py:23: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/site-packages/chempy/sdf.py:24: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/site-packages/pmg_tk/skins/normal/__init__.py:849: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pmg_tk/skins/normal/__init__.py:889: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/internal.py:252: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/internal.py:253: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/internal.py:254: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/internal.py:257: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/movie.py:818: SyntaxWarning: invalid escape sequence '\W' /usr/lib/python3.13/site-packages/pymol/moving.py:733: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/site-packages/pymol/parser.py:48: SyntaxWarning: invalid escape sequence '\[' /usr/lib/python3.13/site-packages/pymol/parser.py:408: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/viewing.py:899: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/viewing.py:912: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/viewing.py:914: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/plugins/installation.py:23: SyntaxWarning: invalid escape sequence '\p' /usr/lib/python3.13/site-packages/pymol/wizard/pseudoatom.py:13: SyntaxWarning: invalid escape sequence '\8' /usr/lib/python3.13/site-packages/setuptools/command/sdist.py:115: SetuptoolsDeprecationWarning: `build_py` command does not inherit from setuptools' `build_py`. !! ******************************************************************************** Custom 'build_py' does not implement 'get_data_files_without_manifest'. Please extend command classes from setuptools instead of distutils. See https://peps.python.org/pep-0632/ for details. ******************************************************************************** !! self._add_data_files(self._safe_data_files(build_py)) copying data -> /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pymol/data copying test -> /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pymol/test copying examples -> /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pymol/examples Exception ignored in: Traceback (most recent call last): File "/usr/lib/python3.13/multiprocessing/pool.py", line 271, in __del__ File "/usr/lib/python3.13/multiprocessing/queues.py", line 397, in put File "/usr/lib/python3.13/multiprocessing/connection.py", line 200, in send_bytes File "/usr/lib/python3.13/multiprocessing/connection.py", line 416, in _send_bytes AttributeError: 'NoneType' object has no attribute 'pack' + rm -rfv /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/bin/__pycache__ + echo '#!/bin/sh' + echo 'export PYMOL_PATH=/usr/lib/python3.13/site-packages/pymol' + echo 'exec /usr/bin/python3 /usr/lib/python3.13/site-packages/pymol/__init__.py "$@"' + cp -a data examples test /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pymol/ + rm -f /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pymol/examples/devel/link_demo.py + rm -f /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pymol/examples/devel/particle01.py + rm -f /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pymol/examples/devel/particle02.py + rm -f /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pymol/test/inp/B03.py + rm -f /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pymol/test/inp/B05.py + rm -f /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pymol/test/inp/B11.py + rm -f /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pymol/test/ref/T01.log + rm -f /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pymol/pymol_path/examples/devel/link_demo.py + rm -f /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pymol/pymol_path/examples/devel/particle01.py + rm -f /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pymol/pymol_path/examples/devel/particle02.py + rm -f /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pymol/pymol_path/test/inp/B03.py + rm -f /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pymol/pymol_path/test/inp/B05.py + rm -f /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pymol/pymol_path/test/inp/B11.py + rm -f /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/pymol/pymol_path/test/ref/T01.log + mkdir -p /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/bin + install -p -m 755 pymol /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/bin/ + desktop-file-install --vendor= --dir=/builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/share/applications /builddir/build/SOURCES/pymol.desktop + mkdir -p /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/share/pixmaps + install -p -m 644 /builddir/build/SOURCES/pymol.png /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/share/pixmaps/ + mkdir -p /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/share/metainfo + install -p -m 644 /builddir/build/SOURCES/pymol.appdata.xml /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/share/metainfo/ + appstream-util validate-relax --nonet /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT//usr/share/metainfo/pymol.appdata.xml /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT//usr/share/metainfo/pymol.appdata.xml: OK + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.5.0-13.fc42 --unique-debug-suffix -2.5.0-13.fc42.i386 --unique-debug-src-base pymol-2.5.0-13.fc42.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/pymol-2.5.0-build/pymol-open-source-2.5.0 find-debuginfo: starting Extracting debug info from 2 files DWARF-compressing 2 files sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/pymol-2.5.0-13.fc42.i386 51230 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/pymol from /bin/sh to #!/usr/bin/sh *** WARNING: ./usr/src/debug/pymol-2.5.0-13.fc42.i386/layer0/GraphicsUtil.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/pymol-2.5.0-13.fc42.i386/layer0/GraphicsUtil.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/pymol-2.5.0-13.fc42.i386/layer3/MaeExportHelpers.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/pymol-2.5.0-13.fc42.i386/layer3/MaeExportHelpers.h is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13 using python3.13 /usr/lib/python3.13/site-packages/chempy/sdf.py:23: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/site-packages/chempy/sdf.py:24: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/site-packages/chempy/sdf.py:23: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/site-packages/chempy/sdf.py:24: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/site-packages/pmg_tk/skins/normal/__init__.py:849: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pmg_tk/skins/normal/__init__.py:889: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pmg_tk/skins/normal/__init__.py:849: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pmg_tk/skins/normal/__init__.py:889: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/data/chempy/tinker/make_simple.py:147: SyntaxWarning: invalid escape sequence '\*' /usr/lib/python3.13/site-packages/pymol/data/chempy/tinker/make_simple.py:151: SyntaxWarning: invalid escape sequence '\*' /usr/lib/python3.13/site-packages/pymol/data/chempy/tinker/make_simple.py:147: SyntaxWarning: invalid escape sequence '\*' /usr/lib/python3.13/site-packages/pymol/data/chempy/tinker/make_simple.py:151: SyntaxWarning: invalid escape sequence '\*' /usr/lib/python3.13/site-packages/pymol/examples/devel/webgui02.py:156: SyntaxWarning: invalid escape sequence '\=' /usr/lib/python3.13/site-packages/pymol/examples/devel/webgui02.py:156: SyntaxWarning: invalid escape sequence '\=' /usr/lib/python3.13/site-packages/pymol/internal.py:252: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/internal.py:253: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/internal.py:254: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/internal.py:257: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/internal.py:252: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/internal.py:253: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/internal.py:254: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/internal.py:257: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/movie.py:818: SyntaxWarning: invalid escape sequence '\W' /usr/lib/python3.13/site-packages/pymol/movie.py:818: SyntaxWarning: invalid escape sequence '\W' /usr/lib/python3.13/site-packages/pymol/moving.py:733: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/site-packages/pymol/moving.py:733: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/site-packages/pymol/parser.py:48: SyntaxWarning: invalid escape sequence '\[' /usr/lib/python3.13/site-packages/pymol/parser.py:408: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/parser.py:48: SyntaxWarning: invalid escape sequence '\[' /usr/lib/python3.13/site-packages/pymol/parser.py:408: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/plugins/installation.py:23: SyntaxWarning: invalid escape sequence '\p' /usr/lib/python3.13/site-packages/pymol/plugins/installation.py:23: SyntaxWarning: invalid escape sequence '\p' /usr/lib/python3.13/site-packages/pymol/viewing.py:899: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/viewing.py:912: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/viewing.py:914: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/viewing.py:899: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/viewing.py:912: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/viewing.py:914: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/pymol/wizard/pseudoatom.py:13: SyntaxWarning: invalid escape sequence '\8' /usr/lib/python3.13/site-packages/pymol/wizard/pseudoatom.py:13: SyntaxWarning: invalid escape sequence '\8' Bytecompiling .py files below /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/debug/usr/lib/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/chempy/bmin/__pycache__/realtime.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/chempy/bmin/__pycache__/state.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/chempy/bmin/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/chempy/bmin/__pycache__/util.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/chempy/bmin/__pycache__/commands.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/chempy/champ/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/chempy/champ/__pycache__/formal_charges.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/chempy/champ/__pycache__/assign.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/chempy/fast/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/chempy/fragments/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/chempy/mmtf/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/chempy/mmtf/__pycache__/io.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/lib/python3.13/site-packages/chempy/tinker/__pycache__/__init__.cpython-313.pyc: rewriting with 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/builddir/build/BUILD/pymol-2.5.0-build/pymol-open-source-2.5.0/AUTHORS /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/share/doc/pymol + cp -pr /builddir/build/BUILD/pymol-2.5.0-build/pymol-open-source-2.5.0/DEVELOPERS /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/share/doc/pymol + cp -pr /builddir/build/BUILD/pymol-2.5.0-build/pymol-open-source-2.5.0/README.md /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/share/doc/pymol + cp -pr /builddir/build/BUILD/pymol-2.5.0-build/pymol-open-source-2.5.0/ChangeLog /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/share/doc/pymol + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.WBMFBz + umask 022 + cd /builddir/build/BUILD/pymol-2.5.0-build + cd pymol-open-source-2.5.0 + LICENSEDIR=/builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/share/licenses/pymol + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/share/licenses/pymol + cp -pr /builddir/build/BUILD/pymol-2.5.0-build/pymol-open-source-2.5.0/LICENSE /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT/usr/share/licenses/pymol + RPM_EC=0 ++ jobs -p + exit 0 Provides: PyMOL(x86-32) = 0:2.5.0-13.fc42 application() application(pymol.desktop) metainfo() metainfo(pymol.appdata.xml) pymol = 2.5.0-13.fc42 pymol(x86-32) = 2.5.0-13.fc42 python3.13dist(pymol) = 2.5 python3dist(pymol) = 2.5 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh libGL.so.1 libGLEW.so.2.2 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.32) libc.so.6(GLIBC_2.33) libc.so.6(GLIBC_2.38) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libc.so.6(GLIBC_ABI_DT_RELR) libfreetype.so.6 libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_3.3.1) libgomp.so.1 libgomp.so.1(GOMP_1.0) libgomp.so.1(GOMP_4.0) libgomp.so.1(OMP_1.0) libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.27) libm.so.6(GLIBC_2.29) libm.so.6(GLIBC_2.35) libnetcdf.so.19 libpng16.so.16 libpng16.so.16(PNG16_0) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.5) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.14) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.18) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.26) libstdc++.so.6(GLIBCXX_3.4.29) libstdc++.so.6(GLIBCXX_3.4.30) libstdc++.so.6(GLIBCXX_3.4.32) libstdc++.so.6(GLIBCXX_3.4.9) libxml2.so.2 libxml2.so.2(LIBXML2_2.4.30) libxml2.so.2(LIBXML2_2.6.0) libxml2.so.2(LIBXML2_2.6.3) python(abi) = 3.13 rtld(GNU_HASH) Processing files: pymol-debugsource-2.5.0-13.fc42.i686 Provides: pymol-debugsource = 2.5.0-13.fc42 pymol-debugsource(x86-32) = 2.5.0-13.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: pymol-debuginfo-2.5.0-13.fc42.i686 Provides: debuginfo(build-id) = 00e4312447921274f31963d59be69b7451f570e5 debuginfo(build-id) = ffe2a8da1983d27cca62ebc85687b1e221e334c0 pymol-debuginfo = 2.5.0-13.fc42 pymol-debuginfo(x86-32) = 2.5.0-13.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: pymol-debugsource(x86-32) = 2.5.0-13.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/pymol-2.5.0-build/BUILDROOT Wrote: /builddir/build/RPMS/pymol-debugsource-2.5.0-13.fc42.i686.rpm Wrote: /builddir/build/RPMS/pymol-debuginfo-2.5.0-13.fc42.i686.rpm Wrote: /builddir/build/RPMS/pymol-2.5.0-13.fc42.i686.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.719KmC + umask 022 + cd /builddir/build/BUILD/pymol-2.5.0-build + test -d /builddir/build/BUILD/pymol-2.5.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/pymol-2.5.0-build + rm -rf /builddir/build/BUILD/pymol-2.5.0-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild pymol-2.5.0-13.fc42.src.rpm Finish: build phase for pymol-2.5.0-13.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1725482711.328960/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/pymol-2.5.0-13.fc42.src.rpm) Config(child) 5 minutes 38 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "pymol", "epoch": null, "version": "2.5.0", "release": "13.fc42", "arch": "src" }, { "name": "pymol-debugsource", "epoch": null, "version": "2.5.0", "release": "13.fc42", "arch": "i686" }, { "name": "pymol-debuginfo", "epoch": null, "version": "2.5.0", "release": "13.fc42", "arch": "i686" }, { "name": "pymol", "epoch": null, "version": "2.5.0", "release": "13.fc42", "arch": "i686" } ] } RPMResults finished