Warning: Permanently added '54.86.215.14' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7982831-fedora-rawhide-i386 --chroot fedora-rawhide-i386 Version: 0.73 PID: 7382 Logging PID: 7383 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7982831, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-i386', 'enable_net': False, 'fedora_review': False, 'git_hash': 'bf6fad042dc8dcd7043999103467acae7fb3b387', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/smoldyn', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'smoldyn', 'package_version': '2.72-6', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-rawhide-i386/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/msuchy', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/msuchy', 'tags': [], 'task_id': '7982831-fedora-rawhide-i386', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/smoldyn /var/lib/copr-rpmbuild/workspace/workdir-tluw9s5j/smoldyn --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/smoldyn', '/var/lib/copr-rpmbuild/workspace/workdir-tluw9s5j/smoldyn', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-tluw9s5j/smoldyn'... Running: git checkout bf6fad042dc8dcd7043999103467acae7fb3b387 -- cmd: ['git', 'checkout', 'bf6fad042dc8dcd7043999103467acae7fb3b387', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-tluw9s5j/smoldyn rc: 0 stdout: stderr: Note: switching to 'bf6fad042dc8dcd7043999103467acae7fb3b387'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at bf6fad0 automatic import of smoldyn Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-tluw9s5j/smoldyn rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Smoldyn-2.72.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o Smoldyn-2.72.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/smoldyn/Smoldyn-2.72.tar.gz/md5/55177f82859a034ac5418e6894089192/Smoldyn-2.72.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated 100 96.4M 100 96.4M 0 0 433M 0 --:--:-- --:--:-- --:--:-- 432M INFO: Reading stdout from command: md5sum Smoldyn-2.72.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-tluw9s5j/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-tluw9s5j/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725502817.250891 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-tluw9s5j/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-tluw9s5j/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725502817.250891 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-tluw9s5j/smoldyn/smoldyn.spec) Config(fedora-rawhide-i686) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1725502817.250891/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-i686-bootstrap-1725502817.250891/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/d3c513cc9c079daa4915dff871501a2918b9936f70c4e817aef7ba20374f3661/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/d3c513cc9c079daa4915dff871501a2918b9936f70c4e817aef7ba20374f3661/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1725502817.250891/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-6.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.5.0-2.fc41.x86_64 dnf5-plugins-5.2.5.0-2.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: local 100% | 149.4 MiB/s | 12.7 MiB | 00m00s Copr repository 100% | 56.6 MiB/s | 2.8 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 56.3 MiB/s | 12.7 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash i686 5.2.32-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.3 MiB bzip2 i686 1.0.8-19.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 93.9 KiB coreutils i686 9.5-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.7 MiB cpio i686 2.15-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB diffutils i686 3.10-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB fedora-release noarch 42-0.3 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B findutils i686 1:4.10.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 MiB gawk i686 5.3.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB glibc-minimal-langpack i686 2.40-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B grep i686 3.11-9.fc41 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.5 MiB which i686 2.21-42.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.9 KiB xz i686 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB Installing dependencies: add-determinism i686 0.3.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB alternatives i686 1.30-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 65.5 KiB ansible-srpm-macros noarch 1-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.7 KiB audit-libs i686 4.0.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 341.8 KiB authselect i686 1.5.0-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 160.6 KiB authselect-libs i686 1.5.0-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 821.4 KiB basesystem noarch 11-21.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B 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openblas-srpm-macros noarch 2-18.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0 B openldap i686 2.6.8-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 677.7 KiB openssl-libs i686 1:3.2.2-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.3 MiB p11-kit i686 0.25.5-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB p11-kit-trust i686 0.25.5-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 361.6 KiB package-notes-srpm-macros noarch 0.5-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam i686 1.6.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB pam-libs i686 1.6.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 132.7 KiB pcre2 i686 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 660.1 KiB pcre2-syntax noarch 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-56.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf i686 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 87.0 KiB pkgconf-m4 noarch 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB pkgconf-pkg-config i686 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 979.0 B popt i686 1.19-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.0 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.14.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.14-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.7.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline i686 8.2-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 465.5 KiB rpm i686 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB rpm-build-libs i686 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.4 KiB rpm-libs i686 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 764.8 KiB rpm-sequoia i686 1.7.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB rust-srpm-macros noarch 26.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs i686 3.46.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB systemd-libs i686 256.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB util-linux-core i686 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB xxhash-libs i686 0.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 115.9 KiB xz-libs i686 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 229.8 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip i686 3.0-41.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 707.1 KiB zlib-ng-compat i686 2.1.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.4 KiB zstd i686 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB Installing groups: build Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation 176 MiB will be used (install 176 MiB, remove 0 B). [ 1/153] bzip2-0:1.0.8-19.fc41.i686 100% | 2.1 MiB/s | 52.8 KiB | 00m00s [ 2/153] cpio-0:2.15-2.fc41.i686 100% | 25.8 MiB/s | 290.8 KiB | 00m00s [ 3/153] coreutils-0:9.5-9.fc42.i686 100% | 25.9 MiB/s | 1.2 MiB | 00m00s [ 4/153] diffutils-0:3.10-8.fc41.i686 100% | 32.8 MiB/s | 403.3 KiB | 00m00s [ 5/153] fedora-release-0:42-0.3.noarc 100% | 2.0 MiB/s | 12.2 KiB | 00m00s [ 6/153] findutils-1:4.10.0-4.fc41.i68 100% | 41.4 MiB/s | 551.1 KiB | 00m00s [ 7/153] gawk-0:5.3.0-4.fc41.i686 100% | 95.1 MiB/s | 1.0 MiB | 00m00s [ 8/153] glibc-minimal-langpack-0:2.40 100% | 17.3 MiB/s | 124.0 KiB | 00m00s [ 9/153] grep-0:3.11-9.fc41.i686 100% | 36.1 MiB/s | 295.5 KiB | 00m00s [ 10/153] gzip-0:1.13-2.fc41.i686 100% | 22.7 MiB/s | 162.6 KiB | 00m00s [ 11/153] info-0:7.1-3.fc41.i686 100% | 22.7 MiB/s | 186.0 KiB | 00m00s [ 12/153] patch-0:2.7.6-25.fc41.i686 100% | 19.8 MiB/s | 142.2 KiB | 00m00s [ 13/153] bash-0:5.2.32-2.fc42.i686 100% | 20.6 MiB/s | 1.8 MiB | 00m00s [ 14/153] redhat-rpm-config-0:294-1.fc4 100% | 12.3 MiB/s | 75.5 KiB | 00m00s [ 15/153] rpm-build-0:4.19.93-1.fc42.i6 100% | 9.3 MiB/s | 76.5 KiB | 00m00s [ 16/153] sed-0:4.9-3.fc41.i686 100% | 43.4 MiB/s | 311.4 KiB | 00m00s [ 17/153] unzip-0:6.0-64.fc41.i686 100% | 25.2 MiB/s | 180.7 KiB | 00m00s [ 18/153] tar-2:1.35-4.fc41.i686 100% | 60.5 MiB/s | 866.7 KiB | 00m00s [ 19/153] which-0:2.21-42.fc41.i686 100% | 8.1 MiB/s | 41.5 KiB | 00m00s [ 20/153] util-linux-0:2.40.2-8.fc42.i6 100% | 115.8 MiB/s | 1.2 MiB | 00m00s [ 21/153] shadow-utils-2:4.15.1-9.fc41. 100% | 48.4 MiB/s | 1.3 MiB | 00m00s [ 22/153] xz-1:5.6.2-2.fc41.i686 100% | 50.2 MiB/s | 462.9 KiB | 00m00s [ 23/153] xz-libs-1:5.6.2-2.fc41.i686 100% | 15.0 MiB/s | 122.7 KiB | 00m00s [ 24/153] audit-libs-0:4.0.2-1.fc41.i68 100% | 15.8 MiB/s | 129.0 KiB | 00m00s [ 25/153] authselect-libs-0:1.5.0-7.fc4 100% | 22.5 MiB/s | 207.5 KiB | 00m00s [ 26/153] glibc-0:2.40-3.fc41.i686 100% | 96.3 MiB/s | 2.0 MiB | 00m00s [ 27/153] libblkid-0:2.40.2-8.fc42.i686 100% | 19.2 MiB/s | 137.5 KiB | 00m00s [ 28/153] libcap-ng-0:0.8.5-3.fc41.i686 100% | 6.5 MiB/s | 33.2 KiB | 00m00s [ 29/153] libfdisk-0:2.40.2-8.fc42.i686 100% | 28.6 MiB/s | 176.0 KiB | 00m00s [ 30/153] libmount-0:2.40.2-8.fc42.i686 100% | 26.6 MiB/s | 163.3 KiB | 00m00s [ 31/153] libselinux-0:3.7-5.fc41.i686 100% | 15.0 MiB/s | 92.4 KiB | 00m00s [ 32/153] libsmartcols-0:2.40.2-8.fc42. 100% | 14.0 MiB/s | 86.2 KiB | 00m00s [ 33/153] libuuid-0:2.40.2-8.fc42.i686 100% | 5.0 MiB/s | 30.6 KiB | 00m00s [ 34/153] ncurses-libs-0:6.5-2.20240629 100% | 57.8 MiB/s | 355.3 KiB | 00m00s [ 35/153] pam-libs-0:1.6.1-6.fc42.i686 100% | 11.6 MiB/s | 59.6 KiB | 00m00s [ 36/153] pam-0:1.6.1-6.fc42.i686 100% | 64.9 MiB/s | 531.9 KiB | 00m00s [ 37/153] readline-0:8.2-11.fc42.i686 100% | 30.5 MiB/s | 219.0 KiB | 00m00s [ 38/153] systemd-libs-0:256.5-1.fc42.i 100% | 83.9 MiB/s | 772.8 KiB | 00m00s [ 39/153] zlib-ng-compat-0:2.1.7-2.fc41 100% | 13.4 MiB/s | 82.1 KiB | 00m00s [ 40/153] util-linux-core-0:2.40.2-8.fc 100% | 65.4 MiB/s | 535.7 KiB | 00m00s [ 41/153] libcap-0:2.70-4.fc41.i686 100% | 21.6 MiB/s | 88.3 KiB | 00m00s [ 42/153] bzip2-libs-0:1.0.8-19.fc41.i6 100% | 6.7 MiB/s | 41.3 KiB | 00m00s [ 43/153] libacl-0:2.3.2-2.fc41.i686 100% | 4.2 MiB/s | 26.0 KiB | 00m00s [ 44/153] libeconf-0:0.6.2-3.fc41.i686 100% | 8.3 MiB/s | 34.1 KiB | 00m00s [ 45/153] libattr-0:2.5.2-4.fc41.i686 100% | 3.6 MiB/s | 18.5 KiB | 00m00s [ 46/153] libgcc-0:14.2.1-1.fc42.i686 100% | 21.0 MiB/s | 150.2 KiB | 00m00s [ 47/153] libsemanage-0:3.7-2.fc41.i686 100% | 20.5 MiB/s | 125.8 KiB | 00m00s [ 48/153] setup-0:2.15.0-5.fc41.noarch 100% | 29.0 MiB/s | 148.3 KiB | 00m00s [ 49/153] libxcrypt-0:4.4.36-7.fc41.i68 100% | 19.6 MiB/s | 120.6 KiB | 00m00s [ 50/153] debugedit-0:5.0-17.fc41.i686 100% | 13.2 MiB/s | 81.1 KiB | 00m00s [ 51/153] elfutils-0:0.191-8.fc41.i686 100% | 49.9 MiB/s | 561.9 KiB | 00m00s [ 52/153] elfutils-libelf-0:0.191-8.fc4 100% | 23.2 MiB/s | 214.0 KiB | 00m00s [ 53/153] file-0:5.45-7.fc41.i686 100% | 8.0 MiB/s | 49.1 KiB | 00m00s [ 54/153] binutils-0:2.43.1-1.fc42.i686 100% | 204.6 MiB/s | 5.9 MiB | 00m00s [ 55/153] pkgconf-pkg-config-0:2.3.0-1. 100% | 1.1 MiB/s | 10.0 KiB | 00m00s [ 56/153] libarchive-0:3.7.4-3.fc41.i68 100% | 33.9 MiB/s | 451.3 KiB | 00m00s [ 57/153] popt-0:1.19-7.fc41.i686 100% | 10.0 MiB/s | 61.5 KiB | 00m00s [ 58/153] rpm-build-libs-0:4.19.93-1.fc 100% | 17.2 MiB/s | 105.5 KiB | 00m00s [ 59/153] rpm-0:4.19.93-1.fc42.i686 100% | 46.5 MiB/s | 523.5 KiB | 00m00s [ 60/153] rpm-libs-0:4.19.93-1.fc42.i68 100% | 36.9 MiB/s | 340.1 KiB | 00m00s [ 61/153] zstd-0:1.5.6-2.fc41.i686 100% | 55.6 MiB/s | 455.8 KiB | 00m00s [ 62/153] curl-0:8.9.1-3.fc42.i686 100% | 39.2 MiB/s | 321.4 KiB | 00m00s [ 63/153] ansible-srpm-macros-0:1-16.fc 100% | 3.4 MiB/s | 20.8 KiB | 00m00s [ 64/153] build-reproducibility-srpm-ma 100% | 2.1 MiB/s | 10.6 KiB | 00m00s [ 65/153] glibc-gconv-extra-0:2.40-3.fc 100% | 119.5 MiB/s | 1.7 MiB | 00m00s [ 66/153] dwz-0:0.15-7.fc41.i686 100% | 17.8 MiB/s | 145.9 KiB | 00m00s [ 67/153] efi-srpm-macros-0:5-12.fc41.n 100% | 4.4 MiB/s | 22.4 KiB | 00m00s [ 68/153] forge-srpm-macros-0:0.3.2-1.f 100% | 3.8 MiB/s | 19.7 KiB | 00m00s [ 69/153] fpc-srpm-macros-0:1.3-13.fc41 100% | 1.6 MiB/s | 8.0 KiB | 00m00s [ 70/153] fonts-srpm-macros-1:2.0.5-17. 100% | 5.3 MiB/s | 27.0 KiB | 00m00s [ 71/153] gnat-srpm-macros-0:6-6.fc41.n 100% | 1.7 MiB/s | 9.0 KiB | 00m00s [ 72/153] go-srpm-macros-0:3.6.0-3.fc41 100% | 5.5 MiB/s | 28.0 KiB | 00m00s [ 73/153] ghc-srpm-macros-0:1.9.1-2.fc4 100% | 1.5 MiB/s | 9.1 KiB | 00m00s [ 74/153] kernel-srpm-macros-0:1.0-24.f 100% | 1.9 MiB/s | 9.9 KiB | 00m00s [ 75/153] lua-srpm-macros-0:1-14.fc41.n 100% | 1.7 MiB/s | 8.9 KiB | 00m00s [ 76/153] ocaml-srpm-macros-0:10-3.fc41 100% | 1.8 MiB/s | 9.2 KiB | 00m00s [ 77/153] perl-srpm-macros-0:1-56.fc41. 100% | 2.8 MiB/s | 8.5 KiB | 00m00s [ 78/153] openblas-srpm-macros-0:2-18.f 100% | 1.3 MiB/s | 7.7 KiB | 00m00s [ 79/153] package-notes-srpm-macros-0:0 100% | 1.6 MiB/s | 9.8 KiB | 00m00s [ 80/153] qt5-srpm-macros-0:5.15.14-3.f 100% | 2.2 MiB/s | 9.0 KiB | 00m00s [ 81/153] pyproject-srpm-macros-0:1.14. 100% | 2.2 MiB/s | 13.4 KiB | 00m00s [ 82/153] python-srpm-macros-0:3.13-3.f 100% | 3.9 MiB/s | 23.7 KiB | 00m00s [ 83/153] zig-srpm-macros-0:1-3.fc41.no 100% | 2.0 MiB/s | 8.1 KiB | 00m00s [ 84/153] rust-srpm-macros-0:26.3-3.fc4 100% | 2.0 MiB/s | 12.1 KiB | 00m00s [ 85/153] qt6-srpm-macros-0:6.7.2-3.fc4 100% | 1.5 MiB/s | 9.1 KiB | 00m00s [ 86/153] pkgconf-m4-0:2.3.0-1.fc42.noa 100% | 3.5 MiB/s | 14.3 KiB | 00m00s [ 87/153] zip-0:3.0-41.fc41.i686 100% | 37.3 MiB/s | 267.5 KiB | 00m00s [ 88/153] pkgconf-0:2.3.0-1.fc42.i686 100% | 7.4 MiB/s | 45.5 KiB | 00m00s [ 89/153] libpkgconf-0:2.3.0-1.fc42.i68 100% | 5.8 MiB/s | 41.7 KiB | 00m00s [ 90/153] authselect-0:1.5.0-7.fc41.i68 100% | 27.8 MiB/s | 142.3 KiB | 00m00s [ 91/153] ed-0:1.20.2-2.fc41.i686 100% | 13.2 MiB/s | 81.2 KiB | 00m00s [ 92/153] libnsl2-0:2.0.1-2.fc41.i686 100% | 7.5 MiB/s | 30.7 KiB | 00m00s [ 93/153] gdbm-libs-1:1.23-7.fc41.i686 100% | 9.7 MiB/s | 59.8 KiB | 00m00s [ 94/153] gdbm-1:1.23-7.fc41.i686 100% | 20.9 MiB/s | 149.5 KiB | 00m00s [ 95/153] libpwquality-0:1.4.5-11.fc41. 100% | 17.7 MiB/s | 109.0 KiB | 00m00s [ 96/153] libtirpc-0:1.3.5-0.fc41.i686 100% | 16.6 MiB/s | 102.0 KiB | 00m00s [ 97/153] crypto-policies-0:20240828-1. 100% | 9.7 MiB/s | 69.9 KiB | 00m00s [ 98/153] openssl-libs-1:3.2.2-5.fc41.i 100% | 135.3 MiB/s | 2.3 MiB | 00m00s [ 99/153] ca-certificates-0:2024.2.68_v 100% | 65.2 MiB/s | 868.2 KiB | 00m00s [100/153] ncurses-base-0:6.5-2.20240629 100% | 8.9 MiB/s | 63.8 KiB | 00m00s [101/153] libcom_err-0:1.47.1-3.fc41.i6 100% | 5.2 MiB/s | 26.9 KiB | 00m00s [102/153] krb5-libs-0:1.21.3-2.fc41.i68 100% | 78.6 MiB/s | 804.5 KiB | 00m00s [103/153] libsepol-0:3.7-2.fc41.i686 100% | 43.4 MiB/s | 355.7 KiB | 00m00s [104/153] pcre2-0:10.44-1.fc41.1.i686 100% | 39.1 MiB/s | 240.0 KiB | 00m00s [105/153] cracklib-0:2.9.11-6.fc41.i686 100% | 11.5 MiB/s | 82.5 KiB | 00m00s [106/153] libxml2-0:2.12.8-2.fc41.i686 100% | 71.4 MiB/s | 730.6 KiB | 00m00s [107/153] libzstd-0:1.5.6-2.fc41.i686 100% | 27.9 MiB/s | 285.8 KiB | 00m00s [108/153] lz4-libs-0:1.10.0-1.fc41.i686 100% | 9.0 MiB/s | 73.5 KiB | 00m00s [109/153] keyutils-libs-0:1.6.3-4.fc41. 100% | 6.2 MiB/s | 32.0 KiB | 00m00s [110/153] libverto-0:0.3.2-9.fc41.i686 100% | 4.1 MiB/s | 21.2 KiB | 00m00s [111/153] basesystem-0:11-21.fc41.noarc 100% | 1.8 MiB/s | 7.4 KiB | 00m00s [112/153] glibc-common-0:2.40-3.fc41.i6 100% | 50.6 MiB/s | 414.9 KiB | 00m00s [113/153] filesystem-0:3.18-23.fc41.i68 100% | 106.9 MiB/s | 1.1 MiB | 00m00s [114/153] gmp-1:6.3.0-2.fc41.i686 100% | 33.8 MiB/s | 311.3 KiB | 00m00s [115/153] mpfr-0:4.2.1-5.fc41.i686 100% | 47.0 MiB/s | 385.0 KiB | 00m00s [116/153] file-libs-0:5.45-7.fc41.i686 100% | 94.1 MiB/s | 770.6 KiB | 00m00s [117/153] fedora-release-common-0:42-0. 100% | 2.8 MiB/s | 23.0 KiB | 00m00s [118/153] elfutils-debuginfod-client-0: 100% | 7.3 MiB/s | 37.6 KiB | 00m00s [119/153] elfutils-libs-0:0.191-8.fc41. 100% | 31.6 MiB/s | 290.9 KiB | 00m00s [120/153] libstdc++-0:14.2.1-1.fc42.i68 100% | 77.7 MiB/s | 954.8 KiB | 00m00s [121/153] coreutils-common-0:9.5-9.fc42 100% | 139.8 MiB/s | 2.1 MiB | 00m00s [122/153] p11-kit-0:0.25.5-3.fc41.i686 100% | 67.2 MiB/s | 481.9 KiB | 00m00s [123/153] p11-kit-trust-0:0.25.5-3.fc41 100% | 19.2 MiB/s | 137.8 KiB | 00m00s [124/153] alternatives-0:1.30-1.fc41.i6 100% | 7.0 MiB/s | 42.8 KiB | 00m00s [125/153] add-determinism-0:0.3.6-1.fc4 100% | 106.0 MiB/s | 868.7 KiB | 00m00s [126/153] jansson-0:2.13.1-10.fc41.i686 100% | 7.5 MiB/s | 45.9 KiB | 00m00s [127/153] lua-libs-0:5.4.6-6.fc41.i686 100% | 24.2 MiB/s | 149.0 KiB | 00m00s [128/153] sqlite-libs-0:3.46.0-4.fc41.i 100% | 82.0 MiB/s | 755.6 KiB | 00m00s [129/153] rpm-sequoia-0:1.7.0-2.fc41.i6 100% | 79.8 MiB/s | 980.1 KiB | 00m00s [130/153] libgomp-0:14.2.1-1.fc42.i686 100% | 38.6 MiB/s | 355.4 KiB | 00m00s [131/153] pcre2-syntax-0:10.44-1.fc41.1 100% | 20.9 MiB/s | 149.9 KiB | 00m00s [132/153] libtasn1-0:4.19.0-9.fc41.i686 100% | 10.5 MiB/s | 75.3 KiB | 00m00s [133/153] libffi-0:3.4.6-3.fc42.i686 100% | 5.3 MiB/s | 38.0 KiB | 00m00s [134/153] fedora-repos-0:42-0.1.noarch 100% | 1.8 MiB/s | 9.2 KiB | 00m00s [135/153] fedora-release-identity-basic 100% | 2.1 MiB/s | 13.0 KiB | 00m00s [136/153] elfutils-default-yama-scope-0 100% | 2.4 MiB/s | 12.3 KiB | 00m00s [137/153] fedora-repos-rawhide-0:42-0.1 100% | 2.1 MiB/s | 8.7 KiB | 00m00s [138/153] fedora-gpg-keys-0:42-0.1.noar 100% | 17.2 MiB/s | 123.3 KiB | 00m00s [139/153] xxhash-libs-0:0.8.2-3.fc41.i6 100% | 9.1 MiB/s | 46.8 KiB | 00m00s [140/153] libcurl-0:8.9.1-3.fc42.i686 100% | 47.6 MiB/s | 389.7 KiB | 00m00s [141/153] libidn2-0:2.3.7-2.fc41.i686 100% | 18.4 MiB/s | 113.0 KiB | 00m00s [142/153] libbrotli-0:1.1.0-5.fc41.i686 100% | 41.4 MiB/s | 339.4 KiB | 00m00s [143/153] libpsl-0:0.21.5-4.fc41.i686 100% | 12.6 MiB/s | 64.7 KiB | 00m00s [144/153] libnghttp2-0:1.63.0-1.fc42.i6 100% | 11.5 MiB/s | 82.3 KiB | 00m00s [145/153] openldap-0:2.6.8-5.fc41.i686 100% | 38.0 MiB/s | 272.3 KiB | 00m00s [146/153] libssh-0:0.11.1-1.fc42.i686 100% | 30.5 MiB/s | 250.0 KiB | 00m00s [147/153] gdb-minimal-0:15.1-1.fc42.i68 100% | 118.0 MiB/s | 4.7 MiB | 00m00s [148/153] libevent-0:2.1.12-14.fc41.i68 100% | 33.8 MiB/s | 277.0 KiB | 00m00s [149/153] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 76.3 MiB/s | 860.0 KiB | 00m00s [150/153] libtool-ltdl-0:2.4.7-12.fc41. 100% | 7.4 MiB/s | 37.7 KiB | 00m00s [151/153] libssh-config-0:0.11.1-1.fc42 100% | 1.5 MiB/s | 9.4 KiB | 00m00s [152/153] libunistring-0:1.1-8.fc41.i68 100% | 67.5 MiB/s | 553.3 KiB | 00m00s [153/153] publicsuffix-list-dafsa-0:202 100% | 9.5 MiB/s | 58.3 KiB | 00m00s -------------------------------------------------------------------------------- [153/153] Total 100% | 112.0 MiB/s | 53.4 MiB | 00m00s Running transaction [ 1/155] Verify package files 100% | 938.0 B/s | 153.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-23.fc41.i686 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-23.fc41.i686 [ 2/155] Prepare transaction 100% | 4.7 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:14.2.1-1. 100% | 296.2 MiB/s | 303.4 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.2.1-1.fc42.i686 >>> Stop post-install scriptlet: libgcc-0:14.2.1-1.fc42.i686 [ 4/155] Installing publicsuffix-list- 100% | 0.0 B/s | 68.3 KiB | 00m00s [ 5/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/155] Installing fedora-release-ide 100% | 0.0 B/s | 952.0 B | 00m00s [ 7/155] Installing fedora-gpg-keys-0: 100% | 56.1 MiB/s | 172.2 KiB | 00m00s [ 8/155] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 9/155] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/155] Installing fedora-release-com 100% | 23.1 MiB/s | 23.7 KiB | 00m00s [ 11/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/155] Installing setup-0:2.15.0-5.f 100% | 70.9 MiB/s | 726.1 KiB | 00m00s >>> Running post-install scriptlet: setup-0:2.15.0-5.fc41.noarch >>> Stop post-install scriptlet: setup-0:2.15.0-5.fc41.noarch [ 13/155] Installing filesystem-0:3.18- 100% | 3.7 MiB/s | 212.0 KiB | 00m00s [ 14/155] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 15/155] Installing pcre2-syntax-0:10. 100% | 248.1 MiB/s | 254.1 KiB | 00m00s [ 16/155] Installing coreutils-common-0 100% | 414.5 MiB/s | 11.2 MiB | 00m00s [ 17/155] Installing ncurses-base-0:6.5 100% | 114.5 MiB/s | 351.7 KiB | 00m00s [ 18/155] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 19/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [ 20/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [ 21/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [ 22/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [ 23/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [ 24/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [ 25/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [ 26/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [ 27/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [ 28/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 29/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [ 30/155] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [ 31/155] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 32/155] Installing ncurses-libs-0:6.5 100% | 238.7 MiB/s | 977.6 KiB | 00m00s >>> Running pre-install scriptlet: glibc-0:2.40-3.fc41.i686 >>> Stop pre-install scriptlet: glibc-0:2.40-3.fc41.i686 warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 33/155] Installing glibc-0:2.40-3.fc4 100% | 230.1 MiB/s | 5.5 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.40-3.fc41.i686 >>> Stop post-install scriptlet: glibc-0:2.40-3.fc41.i686 [ 34/155] Installing bash-0:5.2.32-2.fc 100% | 436.9 MiB/s | 8.3 MiB | 00m00s >>> Running post-install scriptlet: bash-0:5.2.32-2.fc42.i686 >>> Stop post-install scriptlet: bash-0:5.2.32-2.fc42.i686 [ 35/155] Installing glibc-common-0:2.4 100% | 208.1 MiB/s | 1.0 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 36/155] Installing glibc-gconv-extra- 100% | 257.3 MiB/s | 7.5 MiB | 00m00s >>> Running post-install scriptlet: glibc-gconv-extra-0:2.40-3.fc41.i686 >>> Stop post-install scriptlet: glibc-gconv-extra-0:2.40-3.fc41.i686 [ 37/155] Installing zlib-ng-compat-0:2 100% | 146.7 MiB/s | 150.2 KiB | 00m00s [ 38/155] Installing xz-libs-1:5.6.2-2. 100% | 225.4 MiB/s | 230.9 KiB | 00m00s [ 39/155] Installing bzip2-libs-0:1.0.8 100% | 0.0 B/s | 77.1 KiB | 00m00s [ 40/155] Installing libuuid-0:2.40.2-8 100% | 40.8 MiB/s | 41.8 KiB | 00m00s [ 41/155] Installing readline-0:8.2-11. 100% | 456.7 MiB/s | 467.6 KiB | 00m00s [ 42/155] Installing popt-0:1.19-7.fc41 100% | 69.6 MiB/s | 142.6 KiB | 00m00s [ 43/155] Installing libblkid-0:2.40.2- 100% | 279.9 MiB/s | 286.6 KiB | 00m00s [ 44/155] Installing libattr-0:2.5.2-4. 100% | 0.0 B/s | 24.7 KiB | 00m00s [ 45/155] Installing libacl-0:2.3.2-2.f 100% | 0.0 B/s | 40.1 KiB | 00m00s [ 46/155] Installing libxcrypt-0:4.4.36 100% | 274.3 MiB/s | 280.9 KiB | 00m00s [ 47/155] Installing libzstd-0:1.5.6-2. 100% | 355.7 MiB/s | 728.4 KiB | 00m00s [ 48/155] Installing elfutils-libelf-0: 100% | 392.2 MiB/s | 1.2 MiB | 00m00s [ 49/155] Installing gmp-1:6.3.0-2.fc41 100% | 361.7 MiB/s | 740.7 KiB | 00m00s [ 50/155] Installing libstdc++-0:14.2.1 100% | 401.1 MiB/s | 2.8 MiB | 00m00s [ 51/155] Installing libeconf-0:0.6.2-3 100% | 0.0 B/s | 62.9 KiB | 00m00s [ 52/155] Installing gdbm-libs-1:1.23-7 100% | 20.6 MiB/s | 126.3 KiB | 00m00s >>> Running pre-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42. >>> Stop pre-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.noa [ 53/155] Installing crypto-policies-0: 100% | 39.8 MiB/s | 163.2 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42 >>> Stop post-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.no [ 54/155] Installing mpfr-0:4.2.1-5.fc4 100% | 315.2 MiB/s | 968.2 KiB | 00m00s [ 55/155] Installing gawk-0:5.3.0-4.fc4 100% | 346.3 MiB/s | 1.7 MiB | 00m00s [ 56/155] Installing dwz-0:0.15-7.fc41. 100% | 322.5 MiB/s | 330.3 KiB | 00m00s [ 57/155] Installing unzip-0:6.0-64.fc4 100% | 390.4 MiB/s | 399.8 KiB | 00m00s [ 58/155] Installing file-libs-0:5.45-7 100% | 710.4 MiB/s | 9.9 MiB | 00m00s [ 59/155] Installing file-0:5.45-7.fc41 100% | 0.0 B/s | 96.0 KiB | 00m00s [ 60/155] Installing libcap-ng-0:0.8.5- 100% | 0.0 B/s | 69.5 KiB | 00m00s [ 61/155] Installing audit-libs-0:4.0.2 100% | 335.9 MiB/s | 343.9 KiB | 00m00s [ 62/155] Installing pam-libs-0:1.6.1-6 100% | 131.8 MiB/s | 134.9 KiB | 00m00s [ 63/155] Installing libcap-0:2.70-4.fc 100% | 205.1 MiB/s | 210.0 KiB | 00m00s [ 64/155] Installing systemd-libs-0:256 100% | 404.2 MiB/s | 2.0 MiB | 00m00s [ 65/155] Installing libsmartcols-0:2.4 100% | 180.5 MiB/s | 184.8 KiB | 00m00s [ 66/155] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 59.6 KiB | 00m00s [ 67/155] Installing libsepol-0:3.7-2.f 100% | 426.9 MiB/s | 874.4 KiB | 00m00s [ 68/155] Installing pcre2-0:10.44-1.fc 100% | 323.0 MiB/s | 661.5 KiB | 00m00s [ 69/155] Installing libselinux-0:3.7-5 100% | 189.0 MiB/s | 193.5 KiB | 00m00s [ 70/155] Installing sed-0:4.9-3.fc41.i 100% | 282.8 MiB/s | 868.8 KiB | 00m00s [ 71/155] Installing grep-0:3.11-9.fc41 100% | 251.6 MiB/s | 1.0 MiB | 00m00s [ 72/155] Installing findutils-1:4.10.0 100% | 375.9 MiB/s | 1.9 MiB | 00m00s [ 73/155] Installing xz-1:5.6.2-2.fc41. 100% | 301.8 MiB/s | 1.2 MiB | 00m00s [ 74/155] Installing libmount-0:2.40.2- 100% | 378.9 MiB/s | 388.0 KiB | 00m00s [ 75/155] Installing lz4-libs-0:1.10.0- 100% | 0.0 B/s | 145.9 KiB | 00m00s [ 76/155] Installing alternatives-0:1.3 100% | 0.0 B/s | 67.0 KiB | 00m00s [ 77/155] Installing lua-libs-0:5.4.6-6 100% | 302.5 MiB/s | 309.8 KiB | 00m00s [ 78/155] Installing libtasn1-0:4.19.0- 100% | 176.6 MiB/s | 180.8 KiB | 00m00s [ 79/155] Installing libunistring-0:1.1 100% | 433.5 MiB/s | 1.7 MiB | 00m00s [ 80/155] Installing elfutils-default-y 100% | 408.6 KiB/s | 2.0 KiB | 00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.noar [ 81/155] Installing elfutils-libs-0:0. 100% | 343.1 MiB/s | 702.6 KiB | 00m00s [ 82/155] Installing libidn2-0:2.3.7-2. 100% | 161.3 MiB/s | 330.3 KiB | 00m00s [ 83/155] Installing libpsl-0:0.21.5-4. 100% | 0.0 B/s | 76.9 KiB | 00m00s [ 84/155] Installing zstd-0:1.5.6-2.fc4 100% | 390.9 MiB/s | 1.6 MiB | 00m00s [ 85/155] Installing util-linux-core-0: 100% | 289.3 MiB/s | 1.4 MiB | 00m00s [ 86/155] Installing tar-2:1.35-4.fc41. 100% | 374.9 MiB/s | 3.0 MiB | 00m00s [ 87/155] Installing libsemanage-0:3.7- 100% | 149.3 MiB/s | 305.9 KiB | 00m00s [ 88/155] Installing shadow-utils-2:4.1 100% | 271.9 MiB/s | 4.1 MiB | 00m00s [ 89/155] Installing zip-0:3.0-41.fc41. 100% | 347.1 MiB/s | 711.0 KiB | 00m00s [ 90/155] Installing gdbm-1:1.23-7.fc41 100% | 222.0 MiB/s | 454.7 KiB | 00m00s [ 91/155] Installing cyrus-sasl-lib-0:2 100% | 413.4 MiB/s | 2.5 MiB | 00m00s [ 92/155] Installing libfdisk-0:2.40.2- 100% | 401.8 MiB/s | 411.5 KiB | 00m00s [ 93/155] Installing bzip2-0:1.0.8-19.f 100% | 96.1 MiB/s | 98.4 KiB | 00m00s [ 94/155] Installing libxml2-0:2.12.8-2 100% | 452.7 MiB/s | 1.8 MiB | 00m00s [ 95/155] Installing add-determinism-0: 100% | 414.3 MiB/s | 2.1 MiB | 00m00s [ 96/155] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 97/155] Installing sqlite-libs-0:3.46 100% | 375.0 MiB/s | 1.5 MiB | 00m00s [ 98/155] Installing ed-0:1.20.2-2.fc41 100% | 140.6 MiB/s | 144.0 KiB | 00m00s [ 99/155] Installing patch-0:2.7.6-25.f 100% | 292.5 MiB/s | 299.5 KiB | 00m00s [100/155] Installing cpio-0:2.15-2.fc41 100% | 276.3 MiB/s | 1.1 MiB | 00m00s [101/155] Installing diffutils-0:3.10-8 100% | 398.7 MiB/s | 1.6 MiB | 00m00s [102/155] Installing libpkgconf-0:2.3.0 100% | 0.0 B/s | 81.8 KiB | 00m00s [103/155] Installing pkgconf-0:2.3.0-1. 100% | 87.4 MiB/s | 89.5 KiB | 00m00s [104/155] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s [105/155] Installing keyutils-libs-0:1. 100% | 0.0 B/s | 59.1 KiB | 00m00s [106/155] Installing libverto-0:0.3.2-9 100% | 0.0 B/s | 30.6 KiB | 00m00s [107/155] Installing jansson-0:2.13.1-1 100% | 0.0 B/s | 89.0 KiB | 00m00s [108/155] Installing libgomp-0:14.2.1-1 100% | 511.6 MiB/s | 523.9 KiB | 00m00s [109/155] Installing libffi-0:3.4.6-3.f 100% | 0.0 B/s | 82.9 KiB | 00m00s [110/155] Installing p11-kit-0:0.25.5-3 100% | 333.2 MiB/s | 2.3 MiB | 00m00s [111/155] Installing p11-kit-trust-0:0. 100% | 50.7 MiB/s | 363.2 KiB | 00m00s >>> Running post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.i686 >>> Stop post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.i686 [112/155] Installing openssl-libs-1:3.2 100% | 368.6 MiB/s | 6.3 MiB | 00m00s [113/155] Installing coreutils-0:9.5-9. 100% | 300.3 MiB/s | 5.7 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.n >>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar [114/155] Installing ca-certificates-0: 100% | 2.6 MiB/s | 2.4 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41. >>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noa [115/155] Installing krb5-libs-0:1.21.3 100% | 292.1 MiB/s | 2.3 MiB | 00m00s [116/155] Installing libarchive-0:3.7.4 100% | 324.3 MiB/s | 996.4 KiB | 00m00s [117/155] Installing libtirpc-0:1.3.5-0 100% | 210.6 MiB/s | 215.6 KiB | 00m00s [118/155] Installing gzip-0:1.13-2.fc41 100% | 192.2 MiB/s | 393.6 KiB | 00m00s [119/155] Installing authselect-libs-0: 100% | 204.2 MiB/s | 836.4 KiB | 00m00s [120/155] Installing cracklib-0:2.9.11- 100% | 80.4 MiB/s | 247.1 KiB | 00m00s [121/155] Installing libpwquality-0:1.4 100% | 137.7 MiB/s | 423.0 KiB | 00m00s [122/155] Installing libnsl2-0:2.0.1-2. 100% | 56.9 MiB/s | 58.3 KiB | 00m00s [123/155] Installing pam-0:1.6.1-6.fc42 100% | 181.0 MiB/s | 1.8 MiB | 00m00s [124/155] Installing libssh-0:0.11.1-1. 100% | 299.6 MiB/s | 613.7 KiB | 00m00s [125/155] Installing rpm-sequoia-0:1.7. 100% | 375.1 MiB/s | 2.6 MiB | 00m00s [126/155] Installing rpm-libs-0:4.19.93 100% | 374.2 MiB/s | 766.4 KiB | 00m00s [127/155] Installing rpm-build-libs-0:4 100% | 205.3 MiB/s | 210.2 KiB | 00m00s [128/155] Installing libevent-0:2.1.12- 100% | 311.2 MiB/s | 955.9 KiB | 00m00s [129/155] Installing xxhash-libs-0:0.8. 100% | 114.5 MiB/s | 117.3 KiB | 00m00s [130/155] Installing libbrotli-0:1.1.0- 100% | 420.8 MiB/s | 861.8 KiB | 00m00s [131/155] Installing libnghttp2-0:1.63. 100% | 170.5 MiB/s | 174.6 KiB | 00m00s [132/155] Installing libtool-ltdl-0:2.4 100% | 0.0 B/s | 70.6 KiB | 00m00s [133/155] Installing openldap-0:2.6.8-5 100% | 332.7 MiB/s | 681.5 KiB | 00m00s [134/155] Installing libcurl-0:8.9.1-3. 100% | 413.7 MiB/s | 847.2 KiB | 00m00s [135/155] Installing elfutils-debuginfo 100% | 55.9 MiB/s | 57.3 KiB | 00m00s [136/155] Installing binutils-0:2.43.1- 100% | 403.7 MiB/s | 25.4 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.43.1-1.fc42.i686 >>> Stop post-install scriptlet: binutils-0:2.43.1-1.fc42.i686 [137/155] Installing elfutils-0:0.191-8 100% | 362.9 MiB/s | 2.5 MiB | 00m00s [138/155] Installing gdb-minimal-0:15.1 100% | 424.9 MiB/s | 13.6 MiB | 00m00s [139/155] Installing debugedit-0:5.0-17 100% | 191.0 MiB/s | 195.6 KiB | 00m00s [140/155] Installing curl-0:8.9.1-3.fc4 100% | 78.3 MiB/s | 801.9 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.93-1.fc42.i686 >>> Stop pre-install scriptlet: rpm-0:4.19.93-1.fc42.i686 [141/155] Installing rpm-0:4.19.93-1.fc 100% | 190.8 MiB/s | 2.5 MiB | 00m00s [142/155] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.2 KiB | 00m00s [143/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [144/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [145/155] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.4 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 62.0 KiB | 00m00s [148/155] Installing python-srpm-macros 100% | 0.0 B/s | 52.2 KiB | 00m00s [149/155] Installing redhat-rpm-config- 100% | 188.4 MiB/s | 192.9 KiB | 00m00s [150/155] Installing rpm-build-0:4.19.9 100% | 182.4 MiB/s | 186.8 KiB | 00m00s [151/155] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [152/155] Installing util-linux-0:2.40. 100% | 177.8 MiB/s | 3.6 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-8.fc42.i686 >>> Stop post-install scriptlet: util-linux-0:2.40.2-8.fc42.i686 [153/155] Installing authselect-0:1.5.0 100% | 80.6 MiB/s | 165.0 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 79.2 MiB/s | 81.1 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [155/155] Installing info-0:7.1-3.fc41. 100% | 321.0 KiB/s | 360.8 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.i686 >>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.i686 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.i686 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.i686 >>> Running post-transaction scriptlet: rpm-0:4.19.93-1.fc42.i686 >>> Stop post-transaction scriptlet: rpm-0:4.19.93-1.fc42.i686 >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.i686 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.i686 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.i686 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.i686 Complete! Warning: skipped PGP checks for 153 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.i686 alternatives-1.30-1.fc41.i686 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.i686 authselect-1.5.0-7.fc41.i686 authselect-libs-1.5.0-7.fc41.i686 basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.i686 binutils-2.43.1-1.fc42.i686 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.i686 bzip2-libs-1.0.8-19.fc41.i686 ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch coreutils-9.5-9.fc42.i686 coreutils-common-9.5-9.fc42.i686 cpio-2.15-2.fc41.i686 cracklib-2.9.11-6.fc41.i686 crypto-policies-20240828-1.git5f66e81.fc42.noarch curl-8.9.1-3.fc42.i686 cyrus-sasl-lib-2.1.28-27.fc41.i686 debugedit-5.0-17.fc41.i686 diffutils-3.10-8.fc41.i686 dwz-0.15-7.fc41.i686 ed-1.20.2-2.fc41.i686 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.i686 elfutils-debuginfod-client-0.191-8.fc41.i686 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.i686 elfutils-libs-0.191-8.fc41.i686 fedora-gpg-keys-42-0.1.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.1.noarch fedora-repos-rawhide-42-0.1.noarch file-5.45-7.fc41.i686 file-libs-5.45-7.fc41.i686 filesystem-3.18-23.fc41.i686 findutils-4.10.0-4.fc41.i686 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.i686 gdb-minimal-15.1-1.fc42.i686 gdbm-1.23-7.fc41.i686 gdbm-libs-1.23-7.fc41.i686 ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40-3.fc41.i686 glibc-common-2.40-3.fc41.i686 glibc-gconv-extra-2.40-3.fc41.i686 glibc-minimal-langpack-2.40-3.fc41.i686 gmp-6.3.0-2.fc41.i686 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch grep-3.11-9.fc41.i686 gzip-1.13-2.fc41.i686 info-7.1-3.fc41.i686 jansson-2.13.1-10.fc41.i686 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.i686 krb5-libs-1.21.3-2.fc41.i686 libacl-2.3.2-2.fc41.i686 libarchive-3.7.4-3.fc41.i686 libattr-2.5.2-4.fc41.i686 libblkid-2.40.2-8.fc42.i686 libbrotli-1.1.0-5.fc41.i686 libcap-2.70-4.fc41.i686 libcap-ng-0.8.5-3.fc41.i686 libcom_err-1.47.1-3.fc41.i686 libcurl-8.9.1-3.fc42.i686 libeconf-0.6.2-3.fc41.i686 libevent-2.1.12-14.fc41.i686 libfdisk-2.40.2-8.fc42.i686 libffi-3.4.6-3.fc42.i686 libgcc-14.2.1-1.fc42.i686 libgomp-14.2.1-1.fc42.i686 libidn2-2.3.7-2.fc41.i686 libmount-2.40.2-8.fc42.i686 libnghttp2-1.63.0-1.fc42.i686 libnsl2-2.0.1-2.fc41.i686 libpkgconf-2.3.0-1.fc42.i686 libpsl-0.21.5-4.fc41.i686 libpwquality-1.4.5-11.fc41.i686 libselinux-3.7-5.fc41.i686 libsemanage-3.7-2.fc41.i686 libsepol-3.7-2.fc41.i686 libsmartcols-2.40.2-8.fc42.i686 libssh-0.11.1-1.fc42.i686 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-1.fc42.i686 libtasn1-4.19.0-9.fc41.i686 libtirpc-1.3.5-0.fc41.i686 libtool-ltdl-2.4.7-12.fc41.i686 libunistring-1.1-8.fc41.i686 libuuid-2.40.2-8.fc42.i686 libverto-0.3.2-9.fc41.i686 libxcrypt-4.4.36-7.fc41.i686 libxml2-2.12.8-2.fc41.i686 libzstd-1.5.6-2.fc41.i686 lua-libs-5.4.6-6.fc41.i686 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.i686 mpfr-4.2.1-5.fc41.i686 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.i686 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.i686 openssl-libs-3.2.2-5.fc41.i686 p11-kit-0.25.5-3.fc41.i686 p11-kit-trust-0.25.5-3.fc41.i686 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-6.fc42.i686 pam-libs-1.6.1-6.fc42.i686 patch-2.7.6-25.fc41.i686 pcre2-10.44-1.fc41.1.i686 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.i686 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.i686 popt-1.19-7.fc41.i686 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.14.0-1.fc41.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.14-3.fc41.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-11.fc42.i686 redhat-rpm-config-294-1.fc42.noarch rpm-4.19.93-1.fc42.i686 rpm-build-4.19.93-1.fc42.i686 rpm-build-libs-4.19.93-1.fc42.i686 rpm-libs-4.19.93-1.fc42.i686 rpm-sequoia-1.7.0-2.fc41.i686 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.i686 setup-2.15.0-5.fc41.noarch shadow-utils-4.15.1-9.fc41.i686 sqlite-libs-3.46.0-4.fc41.i686 systemd-libs-256.5-1.fc42.i686 tar-1.35-4.fc41.i686 unzip-6.0-64.fc41.i686 util-linux-2.40.2-8.fc42.i686 util-linux-core-2.40.2-8.fc42.i686 which-2.21-42.fc41.i686 xxhash-libs-0.8.2-3.fc41.i686 xz-5.6.2-2.fc41.i686 xz-libs-5.6.2-2.fc41.i686 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.i686 zlib-ng-compat-2.1.7-2.fc41.i686 zstd-1.5.6-2.fc41.i686 Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1725408000 Wrote: /builddir/build/SRPMS/smoldyn-2.72-6.fc42.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-i686-1725502817.250891/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1725502817.250891/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-tluw9s5j/smoldyn/smoldyn.spec) Config(child) 0 minutes 20 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/smoldyn-2.72-6.fc42.src.rpm) Config(fedora-rawhide-i686) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1725502817.250891/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1725502817.250891/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1725502817.250891/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-6.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.5.0-2.fc41.x86_64 dnf5-plugins-5.2.5.0-2.fc41.x86_64 Finish: chroot init Start: build phase for smoldyn-2.72-6.fc42.src.rpm Start: build setup for smoldyn-2.72-6.fc42.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1725408000 Wrote: /builddir/build/SRPMS/smoldyn-2.72-6.fc42.src.rpm Updating and loading repositories: Copr repository 100% | 109.7 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 225.1 KiB/s | 3.8 KiB | 00m00s local 100% | 2.3 KiB/s | 3.5 KiB | 00m02s Repositories loaded. Package Arch Version Repository Size Installing: boost-devel i686 1.83.0-8.fc41 copr_base 143.0 MiB cmake i686 3.28.3-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 32.4 MiB freeglut-devel i686 3.6.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB gcc i686 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101.7 MiB gcc-c++ i686 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38.9 MiB libXi-devel i686 1.8.1-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 132.6 KiB libXmu-devel i686 1.2.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 66.2 KiB libglvnd-devel i686 1:1.7.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB libtiff-devel i686 4.6.0-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 709.2 KiB make i686 1:4.4.1-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB perl-macros noarch 4:5.40.0-511.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.5 KiB pybind11-devel i686 2.13.1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 846.0 KiB python3-devel i686 3.13.0~rc1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB python3-flaky noarch 3.8.1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 129.4 KiB python3-matplotlib i686 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21.1 MiB python3-setuptools noarch 69.2.0-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 MiB python3-wheel noarch 1:0.43.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 516.1 KiB xorg-x11-server-Xvfb i686 1.20.14-37.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB zlib-ng-compat-devel i686 2.1.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.7 KiB Installing dependencies: 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noarch 2024.1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB xorg-x11-server-common i686 1.20.14-37.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 127.3 KiB xorg-x11-xauth i686 1:1.1.3-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.1 KiB Transaction Summary: Installing: 274 packages Total size of inbound packages is 262 MiB. Need to download 262 MiB. After this operation 1 GiB will be used (install 1 GiB, remove 0 B). [ 1/274] boost-devel-0:1.83.0-8.fc41.i 100% | 213.5 MiB/s | 11.7 MiB | 00m00s [ 2/274] freeglut-devel-0:3.6.0-2.fc41 100% | 14.7 MiB/s | 886.8 KiB | 00m00s [ 3/274] cmake-0:3.28.3-7.fc41.i686 100% | 67.0 MiB/s | 11.2 MiB | 00m00s [ 4/274] libXi-devel-0:1.8.1-6.fc41.i6 100% | 7.7 MiB/s | 103.1 KiB | 00m00s [ 5/274] libXmu-devel-0:1.2.1-2.fc41.i 100% | 1.7 MiB/s | 22.6 KiB | 00m00s [ 6/274] libglvnd-devel-1:1.7.0-5.fc41 100% | 10.2 MiB/s | 157.0 KiB | 00m00s [ 7/274] libtiff-devel-0:4.6.0-6.fc42. 100% | 24.1 MiB/s | 247.0 KiB | 00m00s [ 8/274] make-1:4.4.1-8.fc41.i686 100% | 44.3 MiB/s | 589.1 KiB | 00m00s [ 9/274] perl-macros-4:5.40.0-511.fc41 100% | 2.4 MiB/s | 12.3 KiB | 00m00s [ 10/274] pybind11-devel-0:2.13.1-3.fc4 100% | 11.4 MiB/s | 175.1 KiB | 00m00s [ 11/274] python3-devel-0:3.13.0~rc1-3. 100% | 43.5 MiB/s | 356.5 KiB | 00m00s [ 12/274] python3-flaky-0:3.8.1-3.fc41. 100% | 5.6 MiB/s | 40.5 KiB | 00m00s [ 13/274] gcc-c++-0:14.2.1-1.fc42.i686 100% | 56.3 MiB/s | 14.3 MiB | 00m00s [ 14/274] python3-matplotlib-0:3.9.1-2. 100% | 67.6 MiB/s | 4.5 MiB | 00m00s [ 15/274] python3-setuptools-0:69.2.0-8 100% | 46.7 MiB/s | 1.4 MiB | 00m00s [ 16/274] python3-wheel-1:0.43.0-4.fc41 100% | 18.4 MiB/s | 151.0 KiB | 00m00s [ 17/274] zlib-ng-compat-devel-0:2.1.7- 100% | 6.2 MiB/s | 38.1 KiB | 00m00s [ 18/274] cmake-filesystem-0:3.28.3-7.f 100% | 3.0 MiB/s | 18.2 KiB | 00m00s [ 19/274] xorg-x11-server-Xvfb-0:1.20.1 100% | 41.9 MiB/s | 943.0 KiB | 00m00s [ 20/274] libXau-0:1.0.11-7.fc41.i686 100% | 5.3 MiB/s | 32.4 KiB | 00m00s [ 21/274] libXdmcp-0:1.1.5-2.fc41.i686 100% | 3.1 MiB/s | 37.8 KiB | 00m00s [ 22/274] libXfont2-0:2.0.7-1.fc41.i686 100% | 11.2 MiB/s | 148.9 KiB | 00m00s [ 23/274] libglvnd-glx-1:1.7.0-5.fc41.i 100% | 16.3 MiB/s | 133.5 KiB | 00m00s [ 24/274] libunwind-0:1.8.0-4.fc41.i686 100% | 8.6 MiB/s | 70.3 KiB | 00m00s [ 25/274] pixman-0:0.43.4-2.fc41.i686 100% | 27.0 MiB/s | 304.1 KiB | 00m00s [ 26/274] xorg-x11-server-common-0:1.20 100% | 2.3 MiB/s | 36.0 KiB | 00m00s [ 27/274] xorg-x11-xauth-1:1.1.3-2.fc41 100% | 3.8 MiB/s | 35.0 KiB | 00m00s [ 28/274] python3-0:3.13.0~rc1-3.fc42.i 100% | 3.0 MiB/s | 27.3 KiB | 00m00s [ 29/274] python3-contourpy-0:1.3.0-1.f 100% | 66.2 MiB/s | 271.3 KiB | 00m00s [ 30/274] python3-fonttools-0:4.53.1-2. 100% | 317.8 MiB/s | 2.9 MiB | 00m00s [ 31/274] dejavu-sans-fonts-0:2.37-24.f 100% | 66.3 MiB/s | 1.3 MiB | 00m00s [ 32/274] freetype-0:2.13.2-6.fc41.i686 100% | 29.3 MiB/s | 420.5 KiB | 00m00s [ 33/274] libqhull_r-1:8.0.2-5.fc41.i68 100% | 19.2 MiB/s | 215.7 KiB | 00m00s [ 34/274] python3-cairo-0:1.25.1-5.fc41 100% | 14.0 MiB/s | 129.4 KiB | 00m00s [ 35/274] python3-cycler-0:0.11.0-13.fc 100% | 2.1 MiB/s | 21.3 KiB | 00m00s [ 36/274] python3-dateutil-1:2.8.2-16.f 100% | 21.3 MiB/s | 349.0 KiB | 00m00s [ 37/274] python3-kiwisolver-0:1.4.7-1. 100% | 5.9 MiB/s | 72.8 KiB | 00m00s [ 38/274] python3-matplotlib-tk-0:3.9.1 100% | 10.0 MiB/s | 113.2 KiB | 00m00s [ 39/274] python3-matplotlib-data-0:3.9 100% | 22.6 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99.3 KiB | 00m00s [220/274] tcl-1:8.6.14-2.fc41.i686 100% | 66.3 MiB/s | 1.1 MiB | 00m00s [221/274] python3-idna-0:3.8-1.fc42.noa 100% | 15.4 MiB/s | 110.5 KiB | 00m00s [222/274] perl-mro-0:1.29-511.fc41.i686 100% | 5.9 MiB/s | 30.2 KiB | 00m00s [223/274] python3-urllib3-0:1.26.19-2.f 100% | 31.6 MiB/s | 259.0 KiB | 00m00s [224/274] perl-overloading-0:0.02-511.f 100% | 2.5 MiB/s | 12.9 KiB | 00m00s [225/274] tk-1:8.6.14-2.fc41.i686 100% | 52.4 MiB/s | 1.6 MiB | 00m00s [226/274] perl-Fcntl-0:1.18-511.fc41.i6 100% | 4.9 MiB/s | 29.9 KiB | 00m00s [227/274] perl-SelectSaver-0:1.02-511.f 100% | 2.9 MiB/s | 11.7 KiB | 00m00s [228/274] perl-IO-0:1.55-511.fc41.i686 100% | 9.6 MiB/s | 78.5 KiB | 00m00s [229/274] perl-File-stat-0:1.14-511.fc4 100% | 3.3 MiB/s | 17.0 KiB | 00m00s [230/274] perl-Pod-Usage-4:2.03-511.fc4 100% | 9.8 MiB/s | 40.0 KiB | 00m00s [231/274] perl-Symbol-0:1.09-511.fc41.n 100% | 3.5 MiB/s | 14.2 KiB | 00m00s [232/274] perl-Socket-4:2.038-511.fc41. 100% | 9.1 MiB/s | 55.7 KiB | 00m00s [233/274] perl-Class-Struct-0:0.68-511. 100% | 5.4 MiB/s | 22.0 KiB | 00m00s [234/274] perl-Text-ParseWords-0:3.31-5 100% | 3.2 MiB/s | 16.6 KiB | 00m00s [235/274] perl-base-0:2.27-511.fc41.noa 100% | 3.2 MiB/s | 16.2 KiB | 00m00s [236/274] libwayland-server-0:1.23.0-2. 100% | 6.1 MiB/s | 43.5 KiB | 00m00s [237/274] hwdata-0:0.386-1.fc42.noarch 100% | 72.1 MiB/s | 517.0 KiB | 00m00s [238/274] libwayland-client-0:1.23.0-2. 100% | 4.1 MiB/s | 33.7 KiB | 00m00s [239/274] google-noto-fonts-common-0:20 100% | 4.3 MiB/s | 17.8 KiB | 00m00s [240/274] nettle-0:3.10-3.fc41.i686 100% | 61.7 MiB/s | 442.4 KiB | 00m00s [241/274] libXft-0:2.3.8-7.fc41.i686 100% | 10.2 MiB/s | 73.3 KiB | 00m00s [242/274] perl-Pod-Perldoc-0:3.28.01-51 100% | 15.7 MiB/s | 80.5 KiB | 00m00s [243/274] perl-podlators-1:6.0.2-2.fc41 100% | 20.3 MiB/s | 124.8 KiB | 00m00s [244/274] perl-File-Temp-1:0.231.100-51 100% | 11.5 MiB/s | 59.1 KiB | 00m00s [245/274] groff-base-0:1.23.0-7.fc41.i6 100% | 84.2 MiB/s | 1.1 MiB | 00m00s [246/274] perl-HTTP-Tiny-0:0.088-512.fc 100% | 13.6 MiB/s | 55.8 KiB | 00m00s [247/274] perl-IPC-Open3-0:1.22-511.fc4 100% | 4.3 MiB/s | 21.8 KiB | 00m00s [248/274] perl-Pod-Simple-1:3.45-511.fc 100% | 40.9 MiB/s | 209.6 KiB | 00m00s [249/274] perl-POSIX-0:2.20-511.fc41.i6 100% | 16.4 MiB/s | 100.7 KiB | 00m00s [250/274] perl-IO-Socket-SSL-0:2.089-1. 100% | 37.6 MiB/s | 231.2 KiB | 00m00s [251/274] perl-Mozilla-CA-0:20240730-1. 100% | 2.8 MiB/s | 14.3 KiB | 00m00s [252/274] perl-Time-Local-2:1.350-511.f 100% | 5.6 MiB/s | 34.5 KiB | 00m00s [253/274] perl-Net-SSLeay-0:1.94-7.fc41 100% | 30.4 MiB/s | 374.1 KiB | 00m00s [254/274] perl-File-Path-0:2.18-511.fc4 100% | 3.1 MiB/s | 35.3 KiB | 00m00s [255/274] openblas-0:0.3.26-5.fc41.i686 100% | 3.8 MiB/s | 38.7 KiB | 00m00s [256/274] openblas-openmp-0:0.3.26-5.fc 100% | 59.7 MiB/s | 4.0 MiB | 00m00s [257/274] perl-Term-ANSIColor-0:5.01-51 100% | 7.8 MiB/s | 47.7 KiB | 00m00s [258/274] perl-Term-Cap-0:1.18-511.fc41 100% | 3.1 MiB/s | 22.1 KiB | 00m00s [259/274] perl-Pod-Escapes-1:1.07-511.f 100% | 4.8 MiB/s | 19.8 KiB | 00m00s [260/274] ncurses-0:6.5-2.20240629.fc41 100% | 51.4 MiB/s | 421.3 KiB | 00m00s [261/274] perl-Text-Tabs+Wrap-0:2024.00 100% | 3.6 MiB/s | 21.9 KiB | 00m00s [262/274] perl-if-0:0.61.000-511.fc41.n 100% | 3.4 MiB/s | 14.0 KiB | 00m00s [263/274] perl-AutoLoader-0:5.74-511.fc 100% | 5.2 MiB/s | 21.2 KiB | 00m00s [264/274] perl-locale-0:1.12-511.fc41.n 100% | 2.7 MiB/s | 13.6 KiB | 00m00s [265/274] perl-IO-Socket-IP-0:0.42-512. 100% | 10.2 MiB/s | 41.8 KiB | 00m00s [266/274] perl-URI-0:5.28-2.fc41.noarch 100% | 23.5 MiB/s | 120.1 KiB | 00m00s [267/274] perl-Data-Dumper-0:2.189-512. 100% | 11.4 MiB/s | 58.2 KiB | 00m00s [268/274] perl-libnet-0:3.15-512.fc41.n 100% | 30.0 MiB/s | 123.0 KiB | 00m00s [269/274] perl-FileHandle-0:2.05-511.fc 100% | 3.0 MiB/s | 15.5 KiB | 00m00s [270/274] perl-Digest-MD5-0:2.59-5.fc41 100% | 5.1 MiB/s | 36.3 KiB | 00m00s [271/274] perl-B-0:1.89-511.fc41.i686 100% | 25.2 MiB/s | 180.9 KiB | 00m00s [272/274] perl-Digest-0:1.20-511.fc41.n 100% | 4.9 MiB/s | 24.9 KiB | 00m00s [273/274] libedit-0:3.1-53.20240808cvs. 100% | 15.3 MiB/s | 109.8 KiB | 00m00s [274/274] llvm-libs-0:18.1.8-2.fc41.i68 100% | 71.7 MiB/s | 28.0 MiB | 00m00s -------------------------------------------------------------------------------- [274/274] Total 100% | 135.2 MiB/s | 262.2 MiB | 00m02s Running transaction [ 1/276] Verify package files 100% | 370.0 B/s | 274.0 B | 00m01s [ 2/276] Prepare transaction 100% | 1.7 KiB/s | 274.0 B | 00m00s [ 3/276] Installing xorg-x11-proto-dev 100% | 297.1 MiB/s | 1.8 MiB | 00m00s [ 4/276] Installing cmake-filesystem-0 100% | 7.0 MiB/s | 7.1 KiB | 00m00s [ 5/276] Installing boost-system-0:1.8 100% | 0.0 B/s | 16.6 KiB | 00m00s [ 6/276] Installing boost-chrono-0:1.8 100% | 0.0 B/s | 37.8 KiB | 00m00s [ 7/276] Installing expat-0:2.6.2-2.fc 100% | 286.5 MiB/s | 293.4 KiB | 00m00s [ 8/276] Installing boost-thread-0:1.8 100% | 133.8 MiB/s | 137.1 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.wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [276/276] Installing gcc-plugin-annobin 100% | 276.7 KiB/s | 61.4 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Running post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.i686 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.i686 >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.i686 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.i686 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.i686 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.i686 >>> Running trigger-install scriptlet: glib2-0:2.82.0-1.fc42.i686 >>> Stop trigger-install scriptlet: glib2-0:2.82.0-1.fc42.i686 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.i686 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.i686 Complete! Warning: skipped PGP checks for 274 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: build setup for smoldyn-2.72-6.fc42.src.rpm Start: rpmbuild smoldyn-2.72-6.fc42.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1725408000 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.qc9sWO + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + test -d /builddir/build/BUILD/smoldyn-2.72-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/smoldyn-2.72-build + /usr/bin/rm -rf /builddir/build/BUILD/smoldyn-2.72-build + /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build + /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.f3mUBX + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + cd /builddir/build/BUILD/smoldyn-2.72-build + rm -rf Smoldyn-2.72 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Smoldyn-2.72.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd Smoldyn-2.72 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (smoldyn-fix_libpaths.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_libpaths --fuzz=0 Patch #0 (smoldyn-fix_libpaths.patch): patching file CMakeLists.txt Patch #1 (smoldyn-freeglut.patch): + echo 'Patch #1 (smoldyn-freeglut.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .freeglut --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 370 (offset 44 lines). Patch #2 (smoldyn-create_soname.patch): + echo 'Patch #2 (smoldyn-create_soname.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .create_soname --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 490 (offset 5 lines). Hunk #2 succeeded at 522 (offset 52 lines). Patch #3 (smoldyn-avoid_automatic_wheel.patch): + echo 'Patch #3 (smoldyn-avoid_automatic_wheel.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .avoid_automatic_wheel --fuzz=0 patching file source/python/CMakeLists.txt Hunk #1 succeeded at 20 (offset -3 lines). + rm -rf source/MSVClibs + rm -rf source/pybind11 + rm -rf source/BioNetGen source/MinGWlibs Toolchain-mingw32.cmake + rm -rf source/vcell/SimpleMesh.cpp source/vcell/SimpleMesh.h source/vcell/SimpleValueProvider.cpp source/vcell/SimpleValueProvider.h source/vcell/zconf.h source/vcell/zlib.h source/vcell/zlib.lib source/NextSubVolume/Eigen + rm -rf source/NextSubVolume/boost_include + rm -f 'source/vtk/*' + find . -type f -name '*.h' -exec chmod 0644 '{}' ';' + find . -type f -name '*.c' -exec chmod 0644 '{}' ';' + find . -type f -name '*.pdf' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec sed -i 's/\r$//' '{}' ';' + sed -e 's|../../../source/BioNetGen/BNG2.pl|/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl|g' -i examples/S95_regression/lrmsim.txt examples/S12_bionetgen/lrm/lrmsim.txt examples/S12_bionetgen/abba/abbasim.txt examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt + cp -p source/libSteve/SFMT/LICENSE.txt source/libSteve/SFMT/SFMT-LICENSE.txt + cp -p source/libSteve/SFMT/README.txt source/libSteve/SFMT/SFMT-README.txt + find -name '*.pyc' -delete + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.NymkMX + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.72 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCPACK_BINARY_STGZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TXZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DOPTION_VCELL:BOOL=OFF -DOPTION_VTK:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DSMOLDYN_VERSION:STRING=2.72 -DSMOLDYN_VERSION_MAJOR:STRING=2 -DOPTION_TARGET_LIBSMOLDYN:BOOL=ON -DOPTION_STATIC:BOOL=OFF -DOPTION_PYTHON:BOOL=ON -DPYBIND11_FINDPYTHON:BOOL=ON -Dpybind11_DIR:PATH=/usr/share/cmake/pybind11 -DOPTION_USE_ZLIB:BOOL=ON -DOPTION_PDE:BOOL=ON -DPERL_VENDORLIB:PATH=/usr/share/perl5/vendor_perl -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DHAVE_GL_FREEGLUT_H=TRUE -DOPTION_EXAMPLES:BOOL=OFF -DOPTION_DOCS:BOOL=OFF -- The CXX compiler identification is GNU 14.2.1 -- The C compiler identification is GNU 14.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Smoldyn version is set to: '2.72' -- Compiling for Smoldyn: ON -- Compiling for Libsmoldyn: ON -- Option to compile Smoldyn for VCell: OFF -- Option to cross-compile for Windows using MinGW: OFF -- Option to include NextSubvolume: ON -- Option to include VTK: OFF -- Option to compile with static libraries: OFF -- Option to include OpenGL support: ON -- Option to include LibTiff: ON -- Option to include Zlib: ON -- Option to incude Python module: ON -- Option to run Libsmoldyn examples: OFF -- Option to build documentation: OFF -- Performing Test C_FLAG_EXISTS -- Performing Test C_FLAG_EXISTS - Success -- Performing Test CXX_FLAG_EXISTS -- Performing Test CXX_FLAG_EXISTS - Success -- [COMPILER] Adding -Wno-unused-parameter -- Build type: Release -- Compiling on a Linux computer -- CMAKE_CXX_FLAGS variable: '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection' -- BioNetGen path: '/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl' -- Found OpenGL: /usr/lib/libOpenGL.so -- OpenGL found: '/usr/include', '/usr/lib/libGL.so;/usr/lib/libGLU.so' -- Found GLUT: /usr/lib/libglut.so -- Found TIFF: /usr/lib/libtiff.so (found version "4.6.0") -- Found Libtiff: '/usr/include', '/usr/lib/libtiff.so' -- Found Zlib: '/usr/include', '/usr/lib/libz.so' -- Boost headers found: '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include' -- Found Python3: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter Development Development.Module Development.Embed -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.1") -- [TEST] Found 15 test scripts -- Configuring done (1.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j4 --verbose Change Dir: '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4 /usr/bin/cmake -S/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 -B/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CMakeFiles /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend /usr/bin/gmake -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 1%] Building C object source/libSteve/CMakeFiles/Steve.dir/List.c.o [ 3%] Building C object source/libSteve/CMakeFiles/Steve.dir/math2.c.o [ 3%] Building C object source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o [ 4%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o -MF CMakeFiles/Steve.dir/Geometry.c.o.d -o CMakeFiles/Steve.dir/Geometry.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/Geometry.c cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o -MF CMakeFiles/nsv.dir/StructuredGrid.cpp.o.d -o CMakeFiles/nsv.dir/StructuredGrid.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/StructuredGrid.cpp cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o -MF CMakeFiles/Steve.dir/opengl2.c.o.d -o CMakeFiles/Steve.dir/opengl2.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/opengl2.c [ 7%] Building C object source/libSteve/CMakeFiles/Steve.dir/parse.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS 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-I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/queue.c.o -MF CMakeFiles/Steve.dir/queue.c.o.d -o CMakeFiles/Steve.dir/queue.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/queue.c [ 9%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ 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-I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o -MF CMakeFiles/Steve.dir/RnSort.c.o.d -o CMakeFiles/Steve.dir/RnSort.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/RnSort.c [ 16%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o [ 16%] Building C object source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o -MF CMakeFiles/nsv.dir/ReactionEquation.cpp.o.d -o CMakeFiles/nsv.dir/ReactionEquation.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/ReactionEquation.cpp [ 17%] Building C object source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o -MF CMakeFiles/Steve.dir/SimCommand.c.o.d -o CMakeFiles/Steve.dir/SimCommand.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SimCommand.c [ 18%] Building C object source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o cd 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source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o -MF CMakeFiles/Steve.dir/Sphere.c.o.d -o CMakeFiles/Steve.dir/Sphere.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/Sphere.c [ 19%] Building C object source/libSteve/CMakeFiles/Steve.dir/string2.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/string2.c.o -MF CMakeFiles/Steve.dir/string2.c.o.d -o CMakeFiles/Steve.dir/string2.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/string2.c [ 20%] Building C object source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o -MF CMakeFiles/Steve.dir/SurfaceParam.c.o.d -o CMakeFiles/Steve.dir/SurfaceParam.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SurfaceParam.c [ 22%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -MF CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o.d -o CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.cpp [ 23%] Building C object source/libSteve/CMakeFiles/Steve.dir/Zn.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Zn.c.o -MF CMakeFiles/Steve.dir/Zn.c.o.d -o CMakeFiles/Steve.dir/Zn.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/Zn.c [ 24%] Building C object source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o -MF CMakeFiles/Steve.dir/SFMT/SFMT.c.o.d -o CMakeFiles/Steve.dir/SFMT/SFMT.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SFMT/SFMT.c [ 25%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o -MF CMakeFiles/nsv.dir/Kairos.cpp.o.d -o CMakeFiles/nsv.dir/Kairos.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/Kairos.cpp /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/string2.c: In function ‘strmatheval’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/string2.c:1415:9: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation] 1415 | strncpy(expr,expression,STRCHAR); | ^ [ 27%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o -MF CMakeFiles/nsv.dir/Io.cpp.o.d -o CMakeFiles/nsv.dir/Io.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/Io.cpp [ 28%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o -MF CMakeFiles/nsv.dir/Geometry.cpp.o.d -o CMakeFiles/nsv.dir/Geometry.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/Geometry.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 28%] Built target Steve [ 29%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o -MF CMakeFiles/nsv.dir/nsvc.cpp.o.d -o CMakeFiles/nsv.dir/nsvc.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/nsvc.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 29%] Built target nsv /usr/bin/gmake -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend /usr/bin/gmake -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend /usr/bin/gmake -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build /usr/bin/gmake -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 30%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o [ 32%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c [ 33%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o [ 34%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [2147483648, 4294967294] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/random2.h:17, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ [ 35%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcmd.c In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:14: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:14: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=] 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=] 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:8: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:8: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=] 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=] 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=] 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=] 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:14: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=] 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=] 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:8: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=] 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=] 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=] 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=] 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=] 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=] 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=] 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 37%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c [ 38%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c [ 39%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9: In function ‘snprintf’, inlined from ‘compartreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [2147483648, 4294967294] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/random2.h:17, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [2147483648, 4294967294] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/random2.h:17, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ [ 40%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolfilament.c [ 41%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcmd.c [ 43%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcmd.c [ 44%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolgraphics.c [ 45%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolmolec.c [ 46%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolport.c [ 48%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smollattice.c [ 49%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c [ 50%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c [ 51%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolreact.c In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9: In function ‘snprintf’, inlined from ‘compartreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~ In file included from /usr/include/stdio.h:970, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9: In function ‘snprintf’, inlined from ‘compartreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3: /usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 53%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolrule.c [ 54%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolfilament.c [ 55%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolfilament.c [ 56%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=] 166 | sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString); | ^~ ~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12: In function ‘sprintf’, inlined from ‘simParseError’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 58%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolgraphics.c [ 59%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolgraphics.c [ 60%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsurface.c [ 61%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o [ 62%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolmolec.c /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolmolec.c [ 64%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolwall.c [ 65%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o /usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp [ 66%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolport.c [ 67%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smollattice.c [ 69%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o [ 70%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolport.c cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolreact.c [ 71%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smollattice.c [ 72%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolrule.c [ 74%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp [ 75%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolreact.c [ 76%] Linking CXX shared library libsmoldyn_shared.so /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_shared.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsmoldyn_shared.so.2 -o libsmoldyn_shared.so.2.72 CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/lib/libGL.so /usr/lib/libGLU.so -lglut /usr/lib/libtiff.so /usr/lib/libz.so /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: warning: type ‘struct latticestruct’ violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field ‘nsv’ 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: type name ‘NextSubvolumeMethod’ should match type name ‘Kairos::NextSubvolumeMethod’ 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:27: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::func_’ [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::target_’ [-Wattributes] /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::args_’ [-Wattributes] [ 77%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsurface.c [ 79%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolrule.c [ 80%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=] 166 | sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString); | ^~ ~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12: In function ‘sprintf’, inlined from ‘simParseError’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=] 166 | sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString); | ^~ ~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12: In function ‘sprintf’, inlined from ‘simParseError’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 81%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsurface.c [ 82%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolwall.c [ 83%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp:15: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::func_’ [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::target_’ [-Wattributes] /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::args_’ [-Wattributes] [ 85%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolwall.c [ 86%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve 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source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib libsmoldyn_static.a gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 87%] Built target smoldyn_static [ 88%] Linking CXX static library lib_pysmoldyn.a cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -P CMakeFiles/_pysmoldyn.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_pysmoldyn.dir/link.txt --verbose=1 /usr/bin/ar qc lib_pysmoldyn.a CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o ../libSteve/CMakeFiles/Steve.dir/Geometry.c.o ../libSteve/CMakeFiles/Steve.dir/List.c.o ../libSteve/CMakeFiles/Steve.dir/math2.c.o 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/usr/bin/ranlib lib_pysmoldyn.a gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 88%] Built target _pysmoldyn /usr/bin/gmake -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory 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-I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.13 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -MF CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o.d -o CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.cpp [ 95%] Linking CXX executable smoldyn /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -o smoldyn libsmoldyn_shared.so.2.72 /usr/lib/libGL.so /usr/lib/libGLU.so -lglut /usr/lib/libtiff.so /usr/lib/libz.so [ 96%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/module.cpp.o cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.13 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/module.cpp.o -MF CMakeFiles/_smoldyn.dir/module.cpp.o.d -o CMakeFiles/_smoldyn.dir/module.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/module.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 96%] Built target smoldyn [ 97%] Linking CXX shared module /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-313-i386-linux-gnu.so cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-313-i386-linux-gnu.so CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o CMakeFiles/_smoldyn.dir/Command.cpp.o CMakeFiles/_smoldyn.dir/Simulation.cpp.o CMakeFiles/_smoldyn.dir/module.cpp.o lib_pysmoldyn.a /usr/lib/libGL.so /usr/lib/libGLU.so -lglut /usr/lib/libtiff.so /usr/lib/libz.so /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/../Smoldyn/smoldyn.h:1045:16: warning: type ‘struct simstruct’ violates the C++ One Definition Rule [-Wodr] 1045 | typedef struct simstruct | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:1045:16: note: a different type is defined in another translation unit 1045 | typedef struct simstruct | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/../Smoldyn/smoldyn.h:1106:19: note: the first difference of corresponding definitions is field ‘callbacks’ 1106 | CallbackFunc* callbacks[MAX_PY_CALLBACK]; // Python callback. | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:1045:16: note: a type with different number of fields is defined in another translation unit 1045 | typedef struct simstruct | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: warning: type ‘struct latticestruct’ violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field ‘nsv’ 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: type name ‘NextSubvolumeMethod’ should match type name ‘Kairos::NextSubvolumeMethod’ 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [2147483648, 4294967294] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/strip /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-313-i386-linux-gnu.so gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 97%] Built target _smoldyn /usr/bin/gmake -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend /usr/bin/gmake -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [ 98%] Copying python source tree to binary directory [100%] Generating wheel in /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/smoldyn /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py/smoldyn cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py && /usr/bin/python3.13 setup.py bdist_wheel -d /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [100%] Built target copy_python_tree running bdist_wheel running build running build_py creating build creating build/lib.linux-i686-cpython-313 creating build/lib.linux-i686-cpython-313/smoldyn copying smoldyn/__init__.py -> build/lib.linux-i686-cpython-313/smoldyn copying smoldyn/__main__.py -> build/lib.linux-i686-cpython-313/smoldyn copying smoldyn/smoldyn.py -> build/lib.linux-i686-cpython-313/smoldyn copying smoldyn/types.py -> build/lib.linux-i686-cpython-313/smoldyn copying smoldyn/utils.py -> build/lib.linux-i686-cpython-313/smoldyn creating build/lib.linux-i686-cpython-313/smoldyn/biosimulators copying smoldyn/biosimulators/__init__.py -> build/lib.linux-i686-cpython-313/smoldyn/biosimulators copying smoldyn/biosimulators/__main__.py -> build/lib.linux-i686-cpython-313/smoldyn/biosimulators copying smoldyn/biosimulators/_version.py -> build/lib.linux-i686-cpython-313/smoldyn/biosimulators copying smoldyn/biosimulators/combine.py -> build/lib.linux-i686-cpython-313/smoldyn/biosimulators copying smoldyn/biosimulators/data_model.py -> build/lib.linux-i686-cpython-313/smoldyn/biosimulators copying smoldyn/biosimulators/utils.py -> build/lib.linux-i686-cpython-313/smoldyn/biosimulators copying smoldyn/_smoldyn.cpython-313-i386-linux-gnu.so -> build/lib.linux-i686-cpython-313/smoldyn running build_ext /usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686 creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/smoldyn copying build/lib.linux-i686-cpython-313/smoldyn/_smoldyn.cpython-313-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/smoldyn creating build/bdist.linux-i686/wheel/smoldyn/biosimulators copying build/lib.linux-i686-cpython-313/smoldyn/biosimulators/utils.py -> build/bdist.linux-i686/wheel/smoldyn/biosimulators copying build/lib.linux-i686-cpython-313/smoldyn/biosimulators/data_model.py -> build/bdist.linux-i686/wheel/smoldyn/biosimulators copying build/lib.linux-i686-cpython-313/smoldyn/biosimulators/combine.py -> build/bdist.linux-i686/wheel/smoldyn/biosimulators copying build/lib.linux-i686-cpython-313/smoldyn/biosimulators/_version.py -> build/bdist.linux-i686/wheel/smoldyn/biosimulators copying build/lib.linux-i686-cpython-313/smoldyn/biosimulators/__main__.py -> build/bdist.linux-i686/wheel/smoldyn/biosimulators copying build/lib.linux-i686-cpython-313/smoldyn/biosimulators/__init__.py -> build/bdist.linux-i686/wheel/smoldyn/biosimulators copying build/lib.linux-i686-cpython-313/smoldyn/utils.py -> build/bdist.linux-i686/wheel/smoldyn copying build/lib.linux-i686-cpython-313/smoldyn/types.py -> build/bdist.linux-i686/wheel/smoldyn copying build/lib.linux-i686-cpython-313/smoldyn/smoldyn.py -> build/bdist.linux-i686/wheel/smoldyn copying build/lib.linux-i686-cpython-313/smoldyn/__main__.py -> build/bdist.linux-i686/wheel/smoldyn copying build/lib.linux-i686-cpython-313/smoldyn/__init__.py -> build/bdist.linux-i686/wheel/smoldyn running install_egg_info running egg_info creating smoldyn.egg-info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt writing manifest file 'smoldyn.egg-info/SOURCES.txt' reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-i686/wheel/smoldyn-2.72-py3.13.egg-info running install_scripts creating build/bdist.linux-i686/wheel/smoldyn-2.72.dist-info/WHEEL creating '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/smoldyn-2.72-cp313-cp313-linux_i686.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-313-i386-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.72.dist-info/METADATA' adding 'smoldyn-2.72.dist-info/WHEEL' adding 'smoldyn-2.72.dist-info/top_level.txt' adding 'smoldyn-2.72.dist-info/RECORD' removing build/bdist.linux-i686/wheel gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' [100%] Built target wheel gmake[1]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.fVG4iI + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + '[' /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT ++ dirname /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT + mkdir -p /builddir/build/BUILD/smoldyn-2.72-build + mkdir /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.72 + DESTDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/bin/smoldyn -- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/libsmoldyn_shared.so.2.72 -- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/libsmoldyn_shared.so.2 -- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/libsmoldyn_shared.so -- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/libsmoldyn_static.a -- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/include/smoldyn/libsmoldyn.h -- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/include/smoldyn/smoldyn.h -- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/include/smoldyn/smoldynconfigure.h + pushd redhat-linux-build/py ~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py ~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 + mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/python3.13/site-packages + cp -a smoldyn smoldyn.egg-info /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/python3.13/site-packages/ + popd ~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.72-6.fc42 --unique-debug-suffix -2.72-6.fc42.i386 --unique-debug-src-base smoldyn-2.72-6.fc42.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 find-debuginfo: starting Extracting debug info from 2 files DWARF-compressing 2 files sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/smoldyn-2.72-6.fc42.i386 3558 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/python3.13/site-packages/smoldyn/__pycache__/utils.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/python3.13/site-packages/smoldyn/__pycache__/types.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/python3.13/site-packages/smoldyn/__pycache__/types.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/python3.13/site-packages/smoldyn/__pycache__/__main__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/python3.13/site-packages/smoldyn/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/python3.13/site-packages/smoldyn/biosimulators/__pycache__/data_model.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/python3.13/site-packages/smoldyn/__pycache__/smoldyn.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/python3.13/site-packages/smoldyn/biosimulators/__pycache__/combine.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/python3.13/site-packages/smoldyn/__pycache__/smoldyn.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/python3.13/site-packages/smoldyn/biosimulators/__pycache__/_version.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/python3.13/site-packages/smoldyn/biosimulators/__pycache__/__main__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/python3.13/site-packages/smoldyn/biosimulators/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/python3.13/site-packages/smoldyn/biosimulators/__pycache__/utils.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/libsmoldyn_static.a: replacing with normalized version Scanned 30 directories and 119 files, processed 14 inodes, 14 modified (5 replaced + 9 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/smoldyn-2.72-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.mPfRwi + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.72 ~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build ~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 + pushd redhat-linux-build + export LD_LIBRARY_PATH=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib + LD_LIBRARY_PATH=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib + export PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib/python3.13/site-packages + xvfb-run ctest -j1 -VV -R 'test_api|test_sanity|test_biosimulator' --output-on-failure --debug /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:425 Here: 425 /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:710 UpdateCTestConfiguration from :/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:437 Here: 437 /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:3036 * Read custom CTest configuration directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:3041 * Check for file: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CTestCustom.cmake /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:3061 * Check for file: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CTestCustom.ctest /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:710 UpdateCTestConfiguration from :/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:407 Test project /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:1770 Constructing a list of tests /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_actions /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_api /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_biosimulators /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_concurrent_simulation /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_connect_func /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_connect_var /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_data_in_array /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_data_outputfile /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_getters /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_issue_118 /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_libsmoldyn /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_multiple_iterations /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_prd_placement /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_sanity /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_sim_from_file /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:1821 Done constructing a list of tests /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:984 Updating test list for fixtures /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:1207 Added 0 tests to meet fixture requirements /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:22 UTC /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:22 UTC /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestMultiProcessHandler.cxx:1418 Checking test dependency graph... /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestMultiProcessHandler.cxx:1447 Checking test dependency graph end /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestMultiProcessHandler.cxx:172 test 2 /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:549 Start 2: test_api /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:710 2: Test command: /usr/bin/python3.13 "/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests/test_api.py" /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:718 2: Working Directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:726 2: Environment variables: /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:731 2: PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:731 2: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:22 UTC /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:830 2: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:1009 1/3 Test #2: test_api ......................... /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:1012 Testing test_api ... /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:268 Passed 0.21 sec /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:22 UTC /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestMultiProcessHandler.cxx:172 test 3 /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:549 Start 3: test_biosimulators /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:710 3: Test command: /usr/bin/python3.13 "/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests/test_biosimulators.py" /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:718 3: Working Directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:726 3: Environment variables: /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:731 3: PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:731 3: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:22 UTC /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:830 3: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 3: ssssssssssssssssssssssss /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 3: ---------------------------------------------------------------------- /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 3: Ran 24 tests in 0.000s /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 3: /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 3: OK (skipped=24) /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:1009 2/3 Test #3: test_biosimulators ............... /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:1012 Testing test_biosimulators ... /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:268 Passed 0.24 sec /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:22 UTC /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestMultiProcessHandler.cxx:172 test 14 /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:549 Start 14: test_sanity /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:710 14: Test command: /usr/bin/python3.13 "/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests/test_sanity.py" /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:718 14: Working Directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:726 14: Environment variables: /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:731 14: PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:731 14: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:22 UTC /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:830 14: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 14: Using smoldyn from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py/smoldyn/__init__.py /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 14: test_newcursim /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 14: /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 14: Testing test_get_err /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 14: (, '') /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:1009 3/3 Test #14: test_sanity ...................... /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:1012 Testing test_sanity ... /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:268 Passed 0.19 sec /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:22 UTC /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:22 UTC /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:22 UTC /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:446 The following tests passed: /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:451 test_api /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:451 test_biosimulators /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:451 test_sanity /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:612 100% tests passed, 0 tests failed out of 3 /builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:628 Total Test time (real) = 0.65 sec + popd + RPM_EC=0 ~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 ++ jobs -p + exit 0 Processing files: smoldyn-2.72-6.fc42.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.T9s1ts + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + cd Smoldyn-2.72 + DOCDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/Using-Smoldyn-with-SED-ML-COMBINE-BioSimulators.md /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/README.md /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(SFMT) = 1.3.3 smoldyn = 2.72-6.fc42 smoldyn(x86-32) = 2.72-6.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_ABI_DT_RELR) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libsmoldyn_shared.so.2 libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) rtld(GNU_HASH) Processing files: smoldyn-doc-2.72-6.fc42.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.JvztN5 + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + cd Smoldyn-2.72 + DOCDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/BioNetGen /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/CMakeLists.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/Doxyfile.in /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/README.md /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/SmolCrowd /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/SmolEmulate /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/Smoldyn /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/_static /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/build_doxygen /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/conf.py /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/doxygen /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/examples /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/index.rst /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/libSteve /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/python /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/requirements.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/tikz /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/user /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/wrl2smol /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: smoldyn-doc = 2.72-6.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-libs-2.72-6.fc42.i686 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.4xyihC + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + cd Smoldyn-2.72 + LICENSEDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/License.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/LICENSE /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsmoldyn_shared.so.2 smoldyn-libs = 2.72-6.fc42 smoldyn-libs(x86-32) = 2.72-6.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libGL.so.1 libGLU.so.1 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.38) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libc.so.6(GLIBC_ABI_DT_RELR) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_3.3.1) libglut.so.3 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.29) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.29) libstdc++.so.6(GLIBCXX_3.4.30) libstdc++.so.6(GLIBCXX_3.4.32) libstdc++.so.6(GLIBCXX_3.4.9) libtiff.so.6 libtiff.so.6(LIBTIFF_4.0) rtld(GNU_HASH) Processing files: smoldyn-libs-devel-2.72-6.fc42.i686 Provides: smoldyn-libs-devel = 2.72-6.fc42 smoldyn-libs-devel(x86-32) = 2.72-6.fc42 smoldyn-libs-static = 0:2.72-6.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsmoldyn_shared.so.2 Processing files: python3-smoldyn-2.72-6.fc42.i686 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.b3Dqw3 + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + cd Smoldyn-2.72 + LICENSEDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/License.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/LICENSE /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-smoldyn = 2.72-6.fc42 python3-smoldyn = 2.72-6.fc42 python3-smoldyn(x86-32) = 2.72-6.fc42 python3.13-smoldyn = 2.72-6.fc42 python3.13dist(smoldyn) = 2.72 python3dist(smoldyn) = 2.72 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libGL.so.1 libGLU.so.1 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.32) libc.so.6(GLIBC_2.38) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libc.so.6(GLIBC_ABI_DT_RELR) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_3.3.1) libglut.so.3 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.29) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.13) libstdc++.so.6(CXXABI_1.3.15) libstdc++.so.6(CXXABI_1.3.2) libstdc++.so.6(CXXABI_1.3.3) libstdc++.so.6(CXXABI_1.3.5) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.18) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.29) libstdc++.so.6(GLIBCXX_3.4.30) libstdc++.so.6(GLIBCXX_3.4.32) libstdc++.so.6(GLIBCXX_3.4.9) libtiff.so.6 libtiff.so.6(LIBTIFF_4.0) python(abi) = 3.13 rtld(GNU_HASH) Obsoletes: python-smoldyn < 2.72-6.fc42 Processing files: smoldyn-debugsource-2.72-6.fc42.i686 Provides: smoldyn-debugsource = 2.72-6.fc42 smoldyn-debugsource(x86-32) = 2.72-6.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-debuginfo-2.72-6.fc42.i686 Provides: debuginfo(build-id) = d82f0b8b6d441ebf3090a19ec7d52ff2b116d617 smoldyn-debuginfo = 2.72-6.fc42 smoldyn-debuginfo(x86-32) = 2.72-6.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(x86-32) = 2.72-6.fc42 Processing files: smoldyn-libs-debuginfo-2.72-6.fc42.i686 Provides: debuginfo(build-id) = eff8498acb959687b4285841d651406488810219 libsmoldyn_shared.so.2.72-2.72-6.fc42.i386.debug smoldyn-libs-debuginfo = 2.72-6.fc42 smoldyn-libs-debuginfo(x86-32) = 2.72-6.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(x86-32) = 2.72-6.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT Wrote: /builddir/build/RPMS/smoldyn-libs-devel-2.72-6.fc42.i686.rpm Wrote: /builddir/build/RPMS/python3-smoldyn-2.72-6.fc42.i686.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-debuginfo-2.72-6.fc42.i686.rpm Wrote: /builddir/build/RPMS/smoldyn-debuginfo-2.72-6.fc42.i686.rpm Wrote: /builddir/build/RPMS/smoldyn-2.72-6.fc42.i686.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-2.72-6.fc42.i686.rpm Wrote: /builddir/build/RPMS/smoldyn-debugsource-2.72-6.fc42.i686.rpm Wrote: /builddir/build/RPMS/smoldyn-doc-2.72-6.fc42.noarch.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Utg0RN + umask 022 + cd /builddir/build/BUILD/smoldyn-2.72-build + test -d /builddir/build/BUILD/smoldyn-2.72-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/smoldyn-2.72-build + rm -rf /builddir/build/BUILD/smoldyn-2.72-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild smoldyn-2.72-6.fc42.src.rpm Finish: build phase for smoldyn-2.72-6.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1725502817.250891/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/smoldyn-2.72-6.fc42.src.rpm) Config(child) 1 minutes 34 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "smoldyn-libs-devel", "epoch": null, "version": "2.72", "release": "6.fc42", "arch": "i686" }, { "name": "smoldyn-libs-debuginfo", "epoch": null, "version": "2.72", "release": "6.fc42", "arch": "i686" }, { "name": "smoldyn-doc", "epoch": null, "version": "2.72", "release": "6.fc42", "arch": "noarch" }, { "name": "smoldyn-libs", "epoch": null, "version": "2.72", "release": "6.fc42", "arch": "i686" }, { "name": "smoldyn-debuginfo", "epoch": null, "version": "2.72", "release": "6.fc42", "arch": "i686" }, { "name": "python3-smoldyn", "epoch": null, "version": "2.72", "release": "6.fc42", "arch": "i686" }, { "name": "smoldyn", "epoch": null, "version": "2.72", "release": "6.fc42", "arch": "i686" }, { "name": "smoldyn", "epoch": null, "version": "2.72", "release": "6.fc42", "arch": "src" }, { "name": "smoldyn-debugsource", "epoch": null, "version": "2.72", "release": "6.fc42", "arch": "i686" } ] } RPMResults finished