Warning: Permanently added '169.63.178.173' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7791560-fedora-rawhide-s390x --chroot fedora-rawhide-s390x


Version: 0.73
PID: 7090
Logging PID: 7091
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 7791560,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-s390x',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'ac50afd4de554bca5b35a7cc879e258eccc429fc',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'mmseq',
 'package_version': '1.0.11-21',
 'project_dirname': 'openblas-0.3.23',
 'project_name': 'openblas-0.3.23',
 'project_owner': 'psimovec',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-rawhide-s390x/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/',
            'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch',
            'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}],
 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/msuchy',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'submitter': 'https://src.fedoraproject.org/user/msuchy',
 'tags': [],
 'task_id': '7791560-fedora-rawhide-s390x',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq /var/lib/copr-rpmbuild/workspace/workdir-beql7hc3/mmseq --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq', '/var/lib/copr-rpmbuild/workspace/workdir-beql7hc3/mmseq', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-beql7hc3/mmseq'...

Running: git checkout ac50afd4de554bca5b35a7cc879e258eccc429fc --

cmd: ['git', 'checkout', 'ac50afd4de554bca5b35a7cc879e258eccc429fc', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-beql7hc3/mmseq
rc: 0
stdout: 
stderr: Note: switching to 'ac50afd4de554bca5b35a7cc879e258eccc429fc'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at ac50afd automatic import of mmseq

Running: copr-distgit-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-beql7hc3/mmseq
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading 1.0.11.zip
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o 1.0.11.zip --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/mmseq/1.0.11.zip/md5/c727916d339d7a2111523800b621ce2b/1.0.11.zip
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 2781k  100 2781k    0     0  7894k      0 --:--:-- --:--:-- --:--:-- 7901k
INFO: Reading stdout from command: md5sum 1.0.11.zip

Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-beql7hc3/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-beql7hc3/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1721949977.378463 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-beql7hc3/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-beql7hc3/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1721949977.378463 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-beql7hc3/mmseq/mmseq.spec)  Config(fedora-rawhide-s390x)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.6
INFO: Mock Version: 5.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1721949977.378463/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-s390x-bootstrap-1721949977.378463/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/84b3629289cf09702d338347b4f443df4151d73560b796c15710610b0243d5fd/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/84b3629289cf09702d338347b4f443df4151d73560b796c15710610b0243d5fd/merged) with podman image umount
INFO: Package manager dnf5 detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf5 tooling
Updating and loading repositories:
 Additional repo http_kojipkgs_fedorapr 100% |   1.3 MiB/s |  13.5 MiB |  00m10s
 Copr repository                        100% | 602.3 KiB/s |   3.2 MiB |  00m05s
 fedora                                 100% |   3.2 MiB/s |  19.5 MiB |  00m06s
Repositories loaded.
Package "dnf5-5.2.5.0-1.fc41.s390x" is already installed.
Package "dnf5-plugins-5.2.5.0-1.fc41.s390x" is already installed.

Nothing to do.
Finish(bootstrap): installing dnf5 tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1721949977.378463/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.92-5.fc41.s390x
  rpm-sequoia-1.7.0-2.fc41.s390x
  dnf5-5.2.5.0-1.fc41.s390x
  dnf5-plugins-5.2.5.0-1.fc41.s390x
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% |   2.8 MiB/s |  19.5 MiB |  00m07s
 Copr repository                        100% | 608.4 KiB/s |   3.2 MiB |  00m05s
 Additional repo http_kojipkgs_fedorapr 100% |  70.5 MiB/s |  13.5 MiB |  00m00s
Repositories loaded.
Package                            Arch   Version                    Repository                                                         Size
Installing group/module packages:
 bash                              s390x  5.2.26-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.3 MiB
 bzip2                             s390x  1.0.8-19.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  99.2 KiB
 coreutils                         s390x  9.5-7.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.0 MiB
 cpio                              s390x  2.15-2.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 diffutils                         s390x  3.10-7.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 fedora-release-common             noarch 41-0.16                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.2 KiB
 findutils                         s390x  1:4.10.0-4.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 gawk                              s390x  5.3.0-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 glibc-minimal-langpack            s390x  2.39.9000-35.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 grep                              s390x  3.11-9.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 gzip                              s390x  1.13-2.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 400.8 KiB
 info                              s390x  7.1-3.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 405.1 KiB
 patch                             s390x  2.7.6-25.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 298.3 KiB
 redhat-rpm-config                 noarch 293-1.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183.5 KiB
 rpm-build                         s390x  4.19.92-5.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 196.4 KiB
 sed                               s390x  4.9-3.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 873.2 KiB
 shadow-utils                      s390x  2:4.15.1-9.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.2 MiB
 tar                               s390x  2:1.35-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.0 MiB
 unzip                             s390x  6.0-64.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 410.0 KiB
 util-linux                        s390x  2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.7 MiB
 which                             s390x  2.21-42.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  83.9 KiB
 xz                                s390x  1:5.6.2-2.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
Installing dependencies:
 add-determinism                   s390x  0.3.5-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.1 MiB
 alternatives                      s390x  1.28-3.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  66.1 KiB
 ansible-srpm-macros               noarch 1-16.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.7 KiB
 audit-libs                        s390x  4.0.1-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 343.0 KiB
 authselect                        s390x  1.5.0-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 153.3 KiB
 authselect-libs                   s390x  1.5.0-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 819.6 KiB
 basesystem                        noarch 11-21.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 binutils                          s390x  2.42.50-20.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  26.8 MiB
 build-reproducibility-srpm-macros noarch 0.3.5-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 735.0   B
 bzip2-libs                        s390x  1.0.8-19.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  88.5 KiB
 ca-certificates                   noarch 2024.2.68_v8.0.302-3.fc41  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 coreutils-common                  s390x  9.5-7.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.2 MiB
 cracklib                          s390x  2.9.11-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 250.0 KiB
 crypto-policies                   noarch 20240717-2.git154fd4e.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 130.4 KiB
 curl                              s390x  8.9.0-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 824.3 KiB
 cyrus-sasl-lib                    s390x  2.1.28-27.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.4 MiB
 debugedit                         s390x  5.0-17.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 202.8 KiB
 dwz                               s390x  0.15-7.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 318.6 KiB
 ed                                s390x  1.20.2-2.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 150.6 KiB
 efi-srpm-macros                   noarch 5-12.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.1 KiB
 elfutils                          s390x  0.191-8.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.0 MiB
 elfutils-debuginfod-client        s390x  0.191-8.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  64.4 KiB
 elfutils-default-yama-scope       noarch 0.191-8.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 KiB
 elfutils-libelf                   s390x  0.191-8.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 elfutils-libs                     s390x  0.191-8.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 746.0 KiB
 fedora-gpg-keys                   noarch 41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 124.7 KiB
 fedora-release                    noarch 41-0.16                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 fedora-release-identity-basic     noarch 41-0.16                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0   B
 fedora-repos                      noarch 41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.9 KiB
 fedora-repos-rawhide              noarch 41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 file                              s390x  5.45-7.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.3 KiB
 file-libs                         s390x  5.45-7.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.9 MiB
 filesystem                        s390x  3.18-23.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.0   B
 fonts-srpm-macros                 noarch 1:2.0.5-17.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.8 KiB
 forge-srpm-macros                 noarch 0.3.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.0 KiB
 fpc-srpm-macros                   noarch 1.3-13.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0   B
 gdb-minimal                       s390x  14.2-15.fc41               copr_base                                                      13.1 MiB
 gdbm                              s390x  1:1.23-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 483.9 KiB
 gdbm-libs                         s390x  1:1.23-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 133.4 KiB
 ghc-srpm-macros                   noarch 1.9.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 747.0   B
 glibc                             s390x  2.39.9000-35.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.2 MiB
 glibc-common                      s390x  2.39.9000-35.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 glibc-gconv-extra                 s390x  2.39.9000-35.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.7 MiB
 gmp                               s390x  1:6.3.0-2.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 770.0 KiB
 gnat-srpm-macros                  noarch 6-6.fc41                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 KiB
 go-srpm-macros                    noarch 3.6.0-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  60.8 KiB
 jansson                           s390x  2.13.1-10.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  92.1 KiB
 kernel-srpm-macros                noarch 1.0-24.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 keyutils-libs                     s390x  1.6.3-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  54.2 KiB
 krb5-libs                         s390x  1.21.3-2.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.4 MiB
 libacl                            s390x  2.3.2-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  43.8 KiB
 libarchive                        s390x  3.7.4-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 libattr                           s390x  2.5.2-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.3 KiB
 libblkid                          s390x  2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 286.5 KiB
 libbrotli                         s390x  1.1.0-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 925.1 KiB
 libcap                            s390x  2.70-4.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 234.2 KiB
 libcap-ng                         s390x  0.8.5-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  76.7 KiB
 libcom_err                        s390x  1.47.1-3.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.0 KiB
 libcurl                           s390x  8.9.0-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 866.1 KiB
 libeconf                          s390x  0.6.2-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  61.8 KiB
 libevent                          s390x  2.1.12-14.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 938.8 KiB
 libfdisk                          s390x  2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 394.8 KiB
 libffi                            s390x  3.4.6-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  65.9 KiB
 libgcc                            s390x  14.1.1-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 173.2 KiB
 libgomp                           s390x  14.1.1-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 531.2 KiB
 libidn2                           s390x  2.3.7-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 328.9 KiB
 libmount                          s390x  2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 375.8 KiB
 libnghttp2                        s390x  1.62.1-2.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 178.0 KiB
 libnsl2                           s390x  2.0.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  61.7 KiB
 libpkgconf                        s390x  2.1.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  85.9 KiB
 libpsl                            s390x  0.21.5-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.3 KiB
 libpwquality                      s390x  1.4.5-11.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 420.9 KiB
 libselinux                        s390x  3.7-5.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 188.9 KiB
 libsemanage                       s390x  3.7-2.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 301.3 KiB
 libsepol                          s390x  3.7-2.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 849.7 KiB
 libsmartcols                      s390x  2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.2 KiB
 libssh                            s390x  0.10.6-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 529.1 KiB
 libssh-config                     noarch 0.10.6-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.0   B
 libstdc++                         s390x  14.1.1-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.1 MiB
 libtasn1                          s390x  4.19.0-9.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 187.5 KiB
 libtirpc                          s390x  1.3.5-0.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 218.5 KiB
 libtool-ltdl                      s390x  2.4.7-12.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  74.0 KiB
 libunistring                      s390x  1.1-8.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 libutempter                       s390x  1.2.1-15.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.3 KiB
 libuuid                           s390x  2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.3 KiB
 libverto                          s390x  0.3.2-9.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.3 KiB
 libxcrypt                         s390x  4.4.36-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 274.7 KiB
 libxml2                           s390x  2.12.8-2.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 libzstd                           s390x  1.5.6-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 875.7 KiB
 lua-libs                          s390x  5.4.6-6.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 320.9 KiB
 lua-srpm-macros                   noarch 1-14.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 KiB
 lz4-libs                          s390x  1.10.0-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 201.3 KiB
 mpfr                              s390x  4.2.1-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 698.7 KiB
 ncurses-base                      noarch 6.5-2.20240629.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.3 KiB
 ncurses-libs                      s390x  6.5-2.20240629.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 ocaml-srpm-macros                 noarch 10-3.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 openblas-srpm-macros              noarch 2-18.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0   B
 openldap                          s390x  2.6.8-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 683.6 KiB
 openssl-libs                      s390x  1:3.2.2-5.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.1 MiB
 p11-kit                           s390x  0.25.5-3.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.5 MiB
 p11-kit-trust                     s390x  0.25.5-3.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 475.2 KiB
 package-notes-srpm-macros         noarch 0.5-12.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 KiB
 pam                               s390x  1.6.1-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 pam-libs                          s390x  1.6.1-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 130.4 KiB
 pcre2                             s390x  10.44-1.fc41.1             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 684.9 KiB
 pcre2-syntax                      noarch 10.44-1.fc41.1             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB
 perl-srpm-macros                  noarch 1-56.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0   B
 pkgconf                           s390x  2.1.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  86.6 KiB
 pkgconf-m4                        noarch 2.1.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.9 KiB
 pkgconf-pkg-config                s390x  2.1.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 988.0   B
 popt                              s390x  1.19-7.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.7 KiB
 publicsuffix-list-dafsa           noarch 20240107-4.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.5 KiB
 pyproject-srpm-macros             noarch 1.14.0-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 python-srpm-macros                noarch 3.13-3.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  51.0 KiB
 qt5-srpm-macros                   noarch 5.15.14-3.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0   B
 qt6-srpm-macros                   noarch 6.7.2-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0   B
 readline                          s390x  8.2-9.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 552.8 KiB
 rpm                               s390x  4.19.92-5.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.0 MiB
 rpm-build-libs                    s390x  4.19.92-5.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 218.4 KiB
 rpm-libs                          s390x  4.19.92-5.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 809.6 KiB
 rpm-sequoia                       s390x  1.7.0-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.2 MiB
 rust-srpm-macros                  noarch 26.3-1.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.8 KiB
 setup                             noarch 2.15.0-5.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB
 sqlite-libs                       s390x  3.46.0-3.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 systemd-libs                      s390x  256.4-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.1 MiB
 util-linux-core                   s390x  2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 xxhash-libs                       s390x  0.8.2-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  68.0 KiB
 xz-libs                           s390x  1:5.6.2-2.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 226.1 KiB
 zig-srpm-macros                   noarch 1-3.fc41                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 KiB
 zip                               s390x  3.0-41.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 750.2 KiB
 zlib-ng-compat                    s390x  2.1.7-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 113.3 KiB
 zstd                              s390x  1.5.6-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
Installing groups:
 Buildsystem building group                                                                                                                 

Transaction Summary:
 Installing:      154 packages

Total size of inbound packages is 53 MiB. Need to download 53 MiB.
After this operation 182 MiB will be used (install 182 MiB, remove 0 B).
[  1/154] bzip2-0:1.0.8-19.fc41.s390x   100% |   2.1 MiB/s |  53.2 KiB |  00m00s
[  2/154] cpio-0:2.15-2.fc41.s390x      100% |  15.7 MiB/s | 290.0 KiB |  00m00s
[  3/154] diffutils-0:3.10-7.fc41.s390x 100% |  23.6 MiB/s | 410.9 KiB |  00m00s
[  4/154] coreutils-0:9.5-7.fc41.s390x  100% |  17.5 MiB/s |   1.2 MiB |  00m00s
[  5/154] fedora-release-common-0:41-0. 100% |   5.5 MiB/s |  22.5 KiB |  00m00s
[  6/154] bash-0:5.2.26-4.fc41.s390x    100% |  22.9 MiB/s |   1.8 MiB |  00m00s
[  7/154] findutils-1:4.10.0-4.fc41.s39 100% |  28.2 MiB/s | 548.8 KiB |  00m00s
[  8/154] glibc-minimal-langpack-0:2.39 100% |  15.0 MiB/s | 122.9 KiB |  00m00s
[  9/154] gawk-0:5.3.0-4.fc41.s390x     100% |  40.3 MiB/s |   1.1 MiB |  00m00s
[ 10/154] gzip-0:1.13-2.fc41.s390x      100% |  20.9 MiB/s | 171.1 KiB |  00m00s
[ 11/154] grep-0:3.11-9.fc41.s390x      100% |  26.3 MiB/s | 296.5 KiB |  00m00s
[ 12/154] info-0:7.1-3.fc41.s390x       100% |  27.0 MiB/s | 193.4 KiB |  00m00s
[ 13/154] redhat-rpm-config-0:293-1.fc4 100% |  18.4 MiB/s |  75.5 KiB |  00m00s
[ 14/154] patch-0:2.7.6-25.fc41.s390x   100% |  22.8 MiB/s | 140.4 KiB |  00m00s
[ 15/154] rpm-build-0:4.19.92-5.fc41.s3 100% |  14.9 MiB/s |  76.3 KiB |  00m00s
[ 16/154] sed-0:4.9-3.fc41.s390x        100% |  27.7 MiB/s | 311.8 KiB |  00m00s
[ 17/154] unzip-0:6.0-64.fc41.s390x     100% |  23.7 MiB/s | 194.1 KiB |  00m00s
[ 18/154] tar-2:1.35-4.fc41.s390x       100% |  49.9 MiB/s | 869.1 KiB |  00m00s
[ 19/154] shadow-utils-2:4.15.1-9.fc41. 100% |  48.8 MiB/s |   1.3 MiB |  00m00s
[ 20/154] which-0:2.21-42.fc41.s390x    100% |  10.5 MiB/s |  43.0 KiB |  00m00s
[ 21/154] util-linux-0:2.40.2-4.fc41.s3 100% |  57.1 MiB/s |   1.1 MiB |  00m00s
[ 22/154] xz-1:5.6.2-2.fc41.s390x       100% |  32.1 MiB/s | 459.5 KiB |  00m00s
[ 23/154] xz-libs-1:5.6.2-2.fc41.s390x  100% |  16.5 MiB/s | 118.0 KiB |  00m00s
[ 24/154] audit-libs-0:4.0.1-4.fc41.s39 100% |  15.4 MiB/s | 126.5 KiB |  00m00s
[ 25/154] glibc-0:2.39.9000-35.fc41.s39 100% |  72.3 MiB/s |   1.9 MiB |  00m00s
[ 26/154] authselect-libs-0:1.5.0-7.fc4 100% |  28.5 MiB/s | 204.0 KiB |  00m00s
[ 27/154] libblkid-0:2.40.2-4.fc41.s390 100% |  21.3 MiB/s | 130.7 KiB |  00m00s
[ 28/154] libcap-ng-0:0.8.5-3.fc41.s390 100% |   5.4 MiB/s |  33.2 KiB |  00m00s
[ 29/154] libfdisk-0:2.40.2-4.fc41.s390 100% |  32.3 MiB/s | 165.5 KiB |  00m00s
[ 30/154] libmount-0:2.40.2-4.fc41.s390 100% |  26.0 MiB/s | 159.5 KiB |  00m00s
[ 31/154] libselinux-0:3.7-5.fc41.s390x 100% |  14.9 MiB/s |  91.6 KiB |  00m00s
[ 32/154] libsmartcols-0:2.40.2-4.fc41. 100% |  14.0 MiB/s |  86.0 KiB |  00m00s
[ 33/154] libutempter-0:1.2.1-15.fc41.s 100% |   5.2 MiB/s |  26.5 KiB |  00m00s
[ 34/154] libuuid-0:2.40.2-4.fc41.s390x 100% |   5.7 MiB/s |  29.4 KiB |  00m00s
[ 35/154] ncurses-libs-0:6.5-2.20240629 100% |  39.1 MiB/s | 360.6 KiB |  00m00s
[ 36/154] pam-0:1.6.1-4.fc41.s390x      100% |  51.4 MiB/s | 526.1 KiB |  00m00s
[ 37/154] pam-libs-0:1.6.1-4.fc41.s390x 100% |   8.1 MiB/s |  58.3 KiB |  00m00s
[ 38/154] readline-0:8.2-9.fc41.s390x   100% |  32.0 MiB/s | 229.5 KiB |  00m00s
[ 39/154] util-linux-core-0:2.40.2-4.fc 100% |  51.6 MiB/s | 528.2 KiB |  00m00s
[ 40/154] zlib-ng-compat-0:2.1.7-2.fc41 100% |  10.7 MiB/s |  65.9 KiB |  00m00s
[ 41/154] systemd-libs-0:256.4-1.fc41.s 100% |  56.0 MiB/s | 745.4 KiB |  00m00s
[ 42/154] bzip2-libs-0:1.0.8-19.fc41.s3 100% |   9.0 MiB/s |  46.3 KiB |  00m00s
[ 43/154] libacl-0:2.3.2-2.fc41.s390x   100% |   4.1 MiB/s |  25.4 KiB |  00m00s
[ 44/154] libcap-0:2.70-4.fc41.s390x    100% |  14.5 MiB/s |  89.0 KiB |  00m00s
[ 45/154] libgcc-0:14.1.1-7.fc41.s390x  100% |  17.1 MiB/s |  87.6 KiB |  00m00s
[ 46/154] libattr-0:2.5.2-4.fc41.s390x  100% |   3.6 MiB/s |  18.4 KiB |  00m00s
[ 47/154] libsemanage-0:3.7-2.fc41.s390 100% |  23.3 MiB/s | 119.2 KiB |  00m00s
[ 48/154] libeconf-0:0.6.2-3.fc41.s390x 100% |   4.8 MiB/s |  34.1 KiB |  00m00s
[ 49/154] libxcrypt-0:4.4.36-7.fc41.s39 100% |  20.1 MiB/s | 123.7 KiB |  00m00s
[ 50/154] setup-0:2.15.0-5.fc41.noarch  100% |  29.0 MiB/s | 148.3 KiB |  00m00s
[ 51/154] debugedit-0:5.0-17.fc41.s390x 100% |  13.4 MiB/s |  82.4 KiB |  00m00s
[ 52/154] elfutils-libelf-0:0.191-8.fc4 100% |  29.8 MiB/s | 213.4 KiB |  00m00s
[ 53/154] elfutils-0:0.191-8.fc41.s390x 100% |  40.5 MiB/s | 581.2 KiB |  00m00s
[ 54/154] file-0:5.45-7.fc41.s390x      100% |   6.0 MiB/s |  49.2 KiB |  00m00s
[ 55/154] pkgconf-pkg-config-0:2.1.1-2. 100% |   1.9 MiB/s |   9.9 KiB |  00m00s
[ 56/154] libarchive-0:3.7.4-3.fc41.s39 100% |  36.0 MiB/s | 442.5 KiB |  00m00s
[ 57/154] popt-0:1.19-7.fc41.s390x      100% |   7.6 MiB/s |  61.9 KiB |  00m00s
[ 58/154] binutils-0:2.42.50-20.fc41.s3 100% | 131.0 MiB/s |   6.0 MiB |  00m00s
[ 59/154] rpm-build-libs-0:4.19.92-5.fc 100% |  14.1 MiB/s | 101.2 KiB |  00m00s
[ 60/154] rpm-0:4.19.92-5.fc41.s390x    100% |  31.9 MiB/s | 523.3 KiB |  00m00s
[ 61/154] rpm-libs-0:4.19.92-5.fc41.s39 100% |  39.6 MiB/s | 324.7 KiB |  00m00s
[ 62/154] curl-0:8.9.0-1.fc41.s390x     100% |  34.5 MiB/s | 318.1 KiB |  00m00s
[ 63/154] zstd-0:1.5.6-2.fc41.s390x     100% |  46.0 MiB/s | 517.6 KiB |  00m00s
[ 64/154] build-reproducibility-srpm-ma 100% |   2.6 MiB/s |  10.5 KiB |  00m00s
[ 65/154] ansible-srpm-macros-0:1-16.fc 100% |   4.1 MiB/s |  20.8 KiB |  00m00s
[ 66/154] efi-srpm-macros-0:5-12.fc41.n 100% |   5.5 MiB/s |  22.4 KiB |  00m00s
[ 67/154] dwz-0:0.15-7.fc41.s390x       100% |  20.1 MiB/s | 144.0 KiB |  00m00s
[ 68/154] glibc-gconv-extra-0:2.39.9000 100% |  98.5 MiB/s |   1.7 MiB |  00m00s
[ 69/154] fonts-srpm-macros-1:2.0.5-17. 100% |   6.6 MiB/s |  27.0 KiB |  00m00s
[ 70/154] forge-srpm-macros-0:0.3.1-2.f 100% |   4.8 MiB/s |  19.5 KiB |  00m00s
[ 71/154] fpc-srpm-macros-0:1.3-13.fc41 100% |   2.6 MiB/s |   8.0 KiB |  00m00s
[ 72/154] ghc-srpm-macros-0:1.9.1-2.fc4 100% |   2.9 MiB/s |   9.1 KiB |  00m00s
[ 73/154] gnat-srpm-macros-0:6-6.fc41.n 100% |   2.9 MiB/s |   9.0 KiB |  00m00s
[ 74/154] go-srpm-macros-0:3.6.0-3.fc41 100% |   9.1 MiB/s |  28.0 KiB |  00m00s
[ 75/154] kernel-srpm-macros-0:1.0-24.f 100% |   3.2 MiB/s |   9.9 KiB |  00m00s
[ 76/154] lua-srpm-macros-0:1-14.fc41.n 100% |   2.9 MiB/s |   8.9 KiB |  00m00s
[ 77/154] ocaml-srpm-macros-0:10-3.fc41 100% |   3.0 MiB/s |   9.2 KiB |  00m00s
[ 78/154] openblas-srpm-macros-0:2-18.f 100% |   2.5 MiB/s |   7.7 KiB |  00m00s
[ 79/154] package-notes-srpm-macros-0:0 100% |   3.2 MiB/s |   9.8 KiB |  00m00s
[ 80/154] perl-srpm-macros-0:1-56.fc41. 100% |   2.8 MiB/s |   8.5 KiB |  00m00s
[ 81/154] pyproject-srpm-macros-0:1.14. 100% |   4.4 MiB/s |  13.4 KiB |  00m00s
[ 82/154] python-srpm-macros-0:3.13-3.f 100% |   5.8 MiB/s |  23.7 KiB |  00m00s
[ 83/154] qt5-srpm-macros-0:5.15.14-3.f 100% |   2.9 MiB/s |   9.0 KiB |  00m00s
[ 84/154] qt6-srpm-macros-0:6.7.2-3.fc4 100% |   3.0 MiB/s |   9.1 KiB |  00m00s
[ 85/154] rust-srpm-macros-0:26.3-1.fc4 100% |   4.1 MiB/s |  12.5 KiB |  00m00s
[ 86/154] zig-srpm-macros-0:1-3.fc41.no 100% |   2.6 MiB/s |   8.1 KiB |  00m00s
[ 87/154] pkgconf-0:2.1.1-2.fc41.s390x  100% |   8.7 MiB/s |  44.5 KiB |  00m00s
[ 88/154] pkgconf-m4-0:2.1.1-2.fc41.noa 100% |   3.5 MiB/s |  14.2 KiB |  00m00s
[ 89/154] zip-0:3.0-41.fc41.s390x       100% |  34.4 MiB/s | 282.1 KiB |  00m00s
[ 90/154] libpkgconf-0:2.1.1-2.fc41.s39 100% |   9.4 MiB/s |  38.7 KiB |  00m00s
[ 91/154] ed-0:1.20.2-2.fc41.s390x      100% |  13.6 MiB/s |  83.3 KiB |  00m00s
[ 92/154] authselect-0:1.5.0-7.fc41.s39 100% |  22.9 MiB/s | 140.7 KiB |  00m00s
[ 93/154] gdbm-1:1.23-7.fc41.s390x      100% |  24.6 MiB/s | 150.9 KiB |  00m00s
[ 94/154] gdbm-libs-1:1.23-7.fc41.s390x 100% |  11.3 MiB/s |  58.0 KiB |  00m00s
[ 95/154] libnsl2-0:2.0.1-2.fc41.s390x  100% |   5.8 MiB/s |  29.5 KiB |  00m00s
[ 96/154] libpwquality-0:1.4.5-11.fc41. 100% |  17.8 MiB/s | 109.1 KiB |  00m00s
[ 97/154] libtirpc-0:1.3.5-0.fc41.s390x 100% |  18.9 MiB/s |  96.7 KiB |  00m00s
[ 98/154] crypto-policies-0:20240717-2. 100% |   9.1 MiB/s |  65.5 KiB |  00m00s
[ 99/154] openssl-libs-1:3.2.2-5.fc41.s 100% | 127.9 MiB/s |   2.0 MiB |  00m00s
[100/154] ncurses-base-0:6.5-2.20240629 100% |  15.6 MiB/s |  63.8 KiB |  00m00s
[101/154] ca-certificates-0:2024.2.68_v 100% |  65.2 MiB/s | 868.2 KiB |  00m00s
[102/154] libcom_err-0:1.47.1-3.fc41.s3 100% |   3.7 MiB/s |  26.4 KiB |  00m00s
[103/154] krb5-libs-0:1.21.3-2.fc41.s39 100% |  58.4 MiB/s | 777.9 KiB |  00m00s
[104/154] libsepol-0:3.7-2.fc41.s390x   100% |  30.9 MiB/s | 347.7 KiB |  00m00s
[105/154] pcre2-0:10.44-1.fc41.1.s390x  100% |  31.8 MiB/s | 260.8 KiB |  00m00s
[106/154] cracklib-0:2.9.11-6.fc41.s390 100% |  16.3 MiB/s |  83.7 KiB |  00m00s
[107/154] libxml2-0:2.12.8-2.fc41.s390x 100% |  69.0 MiB/s | 707.0 KiB |  00m00s
[108/154] lz4-libs-0:1.10.0-1.fc41.s390 100% |  15.4 MiB/s |  94.7 KiB |  00m00s
[109/154] libzstd-0:1.5.6-2.fc41.s390x  100% |  42.4 MiB/s | 346.9 KiB |  00m00s
[110/154] keyutils-libs-0:1.6.3-4.fc41. 100% |   6.2 MiB/s |  31.5 KiB |  00m00s
[111/154] libverto-0:0.3.2-9.fc41.s390x 100% |   3.4 MiB/s |  20.9 KiB |  00m00s
[112/154] basesystem-0:11-21.fc41.noarc 100% |   1.8 MiB/s |   7.4 KiB |  00m00s
[113/154] glibc-common-0:2.39.9000-35.f 100% |  45.8 MiB/s | 421.7 KiB |  00m00s
[114/154] gmp-1:6.3.0-2.fc41.s390x      100% |  35.4 MiB/s | 326.3 KiB |  00m00s
[115/154] mpfr-0:4.2.1-5.fc41.s390x     100% |  32.3 MiB/s | 297.8 KiB |  00m00s
[116/154] fedora-repos-0:41-0.2.noarch  100% |   2.3 MiB/s |   9.3 KiB |  00m00s
[117/154] filesystem-0:3.18-23.fc41.s39 100% |  56.3 MiB/s |   1.1 MiB |  00m00s
[118/154] file-libs-0:5.45-7.fc41.s390x 100% |  68.3 MiB/s | 768.8 KiB |  00m00s
[119/154] elfutils-debuginfod-client-0: 100% |   5.2 MiB/s |  37.5 KiB |  00m00s
[120/154] elfutils-libs-0:0.191-8.fc41. 100% |  34.3 MiB/s | 280.8 KiB |  00m00s
[121/154] p11-kit-0:0.25.5-3.fc41.s390x 100% |  36.2 MiB/s | 519.4 KiB |  00m00s
[122/154] libstdc++-0:14.1.1-7.fc41.s39 100% |  48.3 MiB/s | 989.0 KiB |  00m00s
[123/154] coreutils-common-0:9.5-7.fc41 100% |  83.8 MiB/s |   2.1 MiB |  00m00s
[124/154] p11-kit-trust-0:0.25.5-3.fc41 100% |  20.0 MiB/s | 143.2 KiB |  00m00s
[125/154] alternatives-0:1.28-3.fc41.s3 100% |   5.9 MiB/s |  42.2 KiB |  00m00s
[126/154] jansson-0:2.13.1-10.fc41.s390 100% |   4.8 MiB/s |  44.6 KiB |  00m00s
[127/154] add-determinism-0:0.3.5-1.fc4 100% |  67.5 MiB/s |   1.0 MiB |  00m00s
[128/154] lua-libs-0:5.4.6-6.fc41.s390x 100% |  19.8 MiB/s | 141.7 KiB |  00m00s
[129/154] sqlite-libs-0:3.46.0-3.fc41.s 100% |  74.8 MiB/s | 765.9 KiB |  00m00s
[130/154] libgomp-0:14.1.1-7.fc41.s390x 100% |  38.5 MiB/s | 354.4 KiB |  00m00s
[131/154] rpm-sequoia-0:1.7.0-2.fc41.s3 100% |  56.8 MiB/s |   1.0 MiB |  00m00s
[132/154] pcre2-syntax-0:10.44-1.fc41.1 100% |  24.4 MiB/s | 149.9 KiB |  00m00s
[133/154] libtasn1-0:4.19.0-9.fc41.s390 100% |  12.7 MiB/s |  78.0 KiB |  00m00s
[134/154] fedora-gpg-keys-0:41-0.2.noar 100% |  23.8 MiB/s | 121.8 KiB |  00m00s
[135/154] fedora-repos-rawhide-0:41-0.2 100% |   2.9 MiB/s |   8.9 KiB |  00m00s
[136/154] libffi-0:3.4.6-2.fc41.s390x   100% |   5.9 MiB/s |  36.1 KiB |  00m00s
[137/154] elfutils-default-yama-scope-0 100% |   4.0 MiB/s |  12.3 KiB |  00m00s
[138/154] fedora-release-0:41-0.16.noar 100% |   3.8 MiB/s |  11.7 KiB |  00m00s
[139/154] fedora-release-identity-basic 100% |   4.1 MiB/s |  12.5 KiB |  00m00s
[140/154] libcurl-0:8.9.0-1.fc41.s390x  100% |  52.9 MiB/s | 379.2 KiB |  00m00s
[141/154] xxhash-libs-0:0.8.2-3.fc41.s3 100% |   7.1 MiB/s |  36.4 KiB |  00m00s
[142/154] libidn2-0:2.3.7-2.fc41.s390x  100% |  15.7 MiB/s | 112.6 KiB |  00m00s
[143/154] libbrotli-0:1.1.0-5.fc41.s390 100% |  46.6 MiB/s | 381.7 KiB |  00m00s
[144/154] libnghttp2-0:1.62.1-2.fc41.s3 100% |  15.6 MiB/s |  80.1 KiB |  00m00s
[145/154] libpsl-0:0.21.5-4.fc41.s390x  100% |  10.5 MiB/s |  64.5 KiB |  00m00s
[146/154] openldap-0:2.6.8-5.fc41.s390x 100% |  36.6 MiB/s | 262.0 KiB |  00m00s
[147/154] libssh-0:0.10.6-6.fc41.s390x  100% |  25.7 MiB/s | 210.6 KiB |  00m00s
[148/154] libevent-0:2.1.12-14.fc41.s39 100% |  28.2 MiB/s | 260.1 KiB |  00m00s
[149/154] cyrus-sasl-lib-0:2.1.28-27.fc 100% |  62.2 MiB/s | 827.5 KiB |  00m00s
[150/154] libtool-ltdl-0:2.4.7-12.fc41. 100% |   6.0 MiB/s |  36.6 KiB |  00m00s
[151/154] libssh-config-0:0.10.6-6.fc41 100% |   2.2 MiB/s |   9.1 KiB |  00m00s
[152/154] publicsuffix-list-dafsa-0:202 100% |  11.4 MiB/s |  58.3 KiB |  00m00s
[153/154] libunistring-0:1.1-8.fc41.s39 100% |  36.4 MiB/s | 558.7 KiB |  00m00s
[154/154] gdb-minimal-0:14.2-15.fc41.s3 100% | 835.1 KiB/s |   4.3 MiB |  00m05s
--------------------------------------------------------------------------------
[154/154] Total                         100% |   9.2 MiB/s |  52.9 MiB |  00m06s
Running transaction
[  1/156] Verify package files          100% | 819.0   B/s | 154.0   B |  00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-23.fc41.s390x
>>> Stop pre-transaction scriptlet: filesystem-0:3.18-23.fc41.s390x
[  2/156] Prepare transaction           100% |   3.1 KiB/s | 154.0   B |  00m00s
[  3/156] Installing libgcc-0:14.1.1-7. 100% | 170.8 MiB/s | 174.9 KiB |  00m00s
>>> Running post-install scriptlet: libgcc-0:14.1.1-7.fc41.s390x
>>> Stop post-install scriptlet: libgcc-0:14.1.1-7.fc41.s390x
[  4/156] Installing publicsuffix-list- 100% |   0.0   B/s |  68.3 KiB |  00m00s
[  5/156] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  6/156] Installing fedora-release-ide 100% |   0.0   B/s | 952.0   B |  00m00s
[  7/156] Installing fedora-gpg-keys-0: 100% |  41.4 MiB/s | 169.7 KiB |  00m00s
[  8/156] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[  9/156] Installing fedora-repos-0:41- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[ 10/156] Installing fedora-release-com 100% |  23.0 MiB/s |  23.5 KiB |  00m00s
[ 11/156] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 12/156] Installing setup-0:2.15.0-5.f 100% |  54.5 MiB/s | 726.1 KiB |  00m00s
>>> Running post-install scriptlet: setup-0:2.15.0-5.fc41.noarch
>>> Stop post-install scriptlet: setup-0:2.15.0-5.fc41.noarch
[ 13/156] Installing filesystem-0:3.18- 100% |   3.1 MiB/s | 212.5 KiB |  00m00s
[ 14/156] Installing basesystem-0:11-21 100% |   0.0   B/s | 124.0   B |  00m00s
[ 15/156] Installing pcre2-syntax-0:10. 100% | 248.1 MiB/s | 254.1 KiB |  00m00s
[ 16/156] Installing coreutils-common-0 100% | 319.7 MiB/s |  11.2 MiB |  00m00s
[ 17/156] Installing ncurses-base-0:6.5 100% |  85.9 MiB/s | 351.7 KiB |  00m00s
[ 18/156] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 19/156] Installing ncurses-libs-0:6.5 100% | 212.5 MiB/s |   1.1 MiB |  00m00s
>>> Running pre-install scriptlet: glibc-0:2.39.9000-35.fc41.s390x
>>> Stop pre-install scriptlet: glibc-0:2.39.9000-35.fc41.s390x
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[ 20/156] Installing glibc-0:2.39.9000- 100% | 187.6 MiB/s |   5.3 MiB |  00m00s
>>> Running post-install scriptlet: glibc-0:2.39.9000-35.fc41.s390x
>>> Stop post-install scriptlet: glibc-0:2.39.9000-35.fc41.s390x
[ 21/156] Installing bash-0:5.2.26-4.fc 100% | 288.2 MiB/s |   8.4 MiB |  00m00s
>>> Running post-install scriptlet: bash-0:5.2.26-4.fc41.s390x
>>> Stop post-install scriptlet: bash-0:5.2.26-4.fc41.s390x
[ 22/156] Installing glibc-common-0:2.3 100% | 158.7 MiB/s |   1.1 MiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[ 23/156] Installing glibc-gconv-extra- 100% | 205.6 MiB/s |   7.8 MiB |  00m00s
>>> Running post-install scriptlet: glibc-gconv-extra-0:2.39.9000-35.fc41.s390x
>>> Stop post-install scriptlet: glibc-gconv-extra-0:2.39.9000-35.fc41.s390x
[ 24/156] Installing zlib-ng-compat-0:2 100% | 111.4 MiB/s | 114.1 KiB |  00m00s
[ 25/156] Installing xz-libs-1:5.6.2-2. 100% | 221.9 MiB/s | 227.2 KiB |  00m00s
[ 26/156] Installing bzip2-libs-0:1.0.8 100% |   0.0   B/s |  89.6 KiB |  00m00s
[ 27/156] Installing libuuid-0:2.40.2-4 100% |   0.0   B/s |  38.4 KiB |  00m00s
[ 28/156] Installing readline-0:8.2-9.f 100% | 270.9 MiB/s | 554.9 KiB |  00m00s
[ 29/156] Installing popt-0:1.19-7.fc41 100% |  73.9 MiB/s | 151.3 KiB |  00m00s
[ 30/156] Installing libblkid-0:2.40.2- 100% | 280.8 MiB/s | 287.6 KiB |  00m00s
[ 31/156] Installing libattr-0:2.5.2-4. 100% |   0.0   B/s |  29.3 KiB |  00m00s
[ 32/156] Installing libacl-0:2.3.2-2.f 100% |   0.0   B/s |  44.6 KiB |  00m00s
[ 33/156] Installing libxcrypt-0:4.4.36 100% | 135.5 MiB/s | 277.4 KiB |  00m00s
[ 34/156] Installing libzstd-0:1.5.6-2. 100% | 214.1 MiB/s | 877.0 KiB |  00m00s
[ 35/156] Installing elfutils-libelf-0: 100% | 295.2 MiB/s |   1.2 MiB |  00m00s
[ 36/156] Installing gmp-1:6.3.0-2.fc41 100% | 251.4 MiB/s | 772.2 KiB |  00m00s
[ 37/156] Installing libstdc++-0:14.1.1 100% | 260.3 MiB/s |   3.1 MiB |  00m00s
[ 38/156] Installing libeconf-0:0.6.2-3 100% |  62.0 MiB/s |  63.5 KiB |  00m00s
[ 39/156] Installing gdbm-libs-1:1.23-7 100% | 132.0 MiB/s | 135.1 KiB |  00m00s
[ 40/156] Installing mpfr-0:4.2.1-5.fc4 100% | 228.0 MiB/s | 700.4 KiB |  00m00s
[ 41/156] Installing gawk-0:5.3.0-4.fc4 100% | 259.2 MiB/s |   1.8 MiB |  00m00s
[ 42/156] Installing dwz-0:0.15-7.fc41. 100% | 312.5 MiB/s | 320.0 KiB |  00m00s
[ 43/156] Installing unzip-0:6.0-64.fc4 100% | 201.9 MiB/s | 413.5 KiB |  00m00s
[ 44/156] Installing file-libs-0:5.45-7 100% | 473.6 MiB/s |   9.9 MiB |  00m00s
[ 45/156] Installing file-0:5.45-7.fc41 100% |  20.5 MiB/s | 104.8 KiB |  00m00s
>>> Running pre-install scriptlet: crypto-policies-0:20240717-2.git154fd4e.fc41.
>>> Stop pre-install scriptlet: crypto-policies-0:20240717-2.git154fd4e.fc41.noa
[ 46/156] Installing crypto-policies-0: 100% |  30.5 MiB/s | 156.1 KiB |  00m00s
>>> Running post-install scriptlet: crypto-policies-0:20240717-2.git154fd4e.fc41
>>> Stop post-install scriptlet: crypto-policies-0:20240717-2.git154fd4e.fc41.no
[ 47/156] Installing libcap-ng-0:0.8.5- 100% |  76.7 MiB/s |  78.6 KiB |  00m00s
[ 48/156] Installing audit-libs-0:4.0.1 100% | 168.5 MiB/s | 345.1 KiB |  00m00s
[ 49/156] Installing pam-libs-0:1.6.1-4 100% | 129.7 MiB/s | 132.8 KiB |  00m00s
[ 50/156] Installing libcap-0:2.70-4.fc 100% | 116.8 MiB/s | 239.2 KiB |  00m00s
[ 51/156] Installing systemd-libs-0:256 100% | 230.9 MiB/s |   2.1 MiB |  00m00s
[ 52/156] Installing libsmartcols-0:2.4 100% | 188.9 MiB/s | 193.4 KiB |  00m00s
[ 53/156] Installing libcom_err-0:1.47. 100% |   0.0   B/s |  68.1 KiB |  00m00s
[ 54/156] Installing libsepol-0:3.7-2.f 100% | 276.9 MiB/s | 850.7 KiB |  00m00s
[ 55/156] Installing pcre2-0:10.44-1.fc 100% | 223.4 MiB/s | 686.3 KiB |  00m00s
[ 56/156] Installing libselinux-0:3.7-5 100% | 185.7 MiB/s | 190.1 KiB |  00m00s
[ 57/156] Installing sed-0:4.9-3.fc41.s 100% | 215.2 MiB/s | 881.4 KiB |  00m00s
[ 58/156] Installing grep-0:3.11-9.fc41 100% | 203.7 MiB/s |   1.0 MiB |  00m00s
[ 59/156] Installing findutils-1:4.10.0 100% | 270.4 MiB/s |   1.9 MiB |  00m00s
[ 60/156] Installing xz-1:5.6.2-2.fc41. 100% | 201.4 MiB/s |   1.2 MiB |  00m00s
[ 61/156] Installing libmount-0:2.40.2- 100% | 184.1 MiB/s | 376.9 KiB |  00m00s
[ 62/156] Installing lz4-libs-0:1.10.0- 100% | 197.6 MiB/s | 202.4 KiB |  00m00s
[ 63/156] Installing alternatives-0:1.2 100% |  66.2 MiB/s |  67.8 KiB |  00m00s
[ 64/156] Installing lua-libs-0:5.4.6-6 100% | 314.5 MiB/s | 322.1 KiB |  00m00s
[ 65/156] Installing libtasn1-0:4.19.0- 100% | 184.9 MiB/s | 189.3 KiB |  00m00s
[ 66/156] Installing libunistring-0:1.1 100% | 253.3 MiB/s |   1.8 MiB |  00m00s
[ 67/156] Installing libidn2-0:2.3.7-2. 100% | 109.0 MiB/s | 334.9 KiB |  00m00s
[ 68/156] Installing libpsl-0:0.21.5-4. 100% |   0.0   B/s |  81.4 KiB |  00m00s
[ 69/156] Installing zstd-0:1.5.6-2.fc4 100% | 305.8 MiB/s |   1.8 MiB |  00m00s
[ 70/156] Installing util-linux-core-0: 100% | 189.1 MiB/s |   1.5 MiB |  00m00s
[ 71/156] Installing tar-2:1.35-4.fc41. 100% | 274.6 MiB/s |   3.0 MiB |  00m00s
[ 72/156] Installing libsemanage-0:3.7- 100% | 148.0 MiB/s | 303.1 KiB |  00m00s
[ 73/156] Installing shadow-utils-2:4.1 100% | 146.2 MiB/s |   4.2 MiB |  00m00s
>>> Running pre-install scriptlet: libutempter-0:1.2.1-15.fc41.s390x
>>> Stop pre-install scriptlet: libutempter-0:1.2.1-15.fc41.s390x
[ 74/156] Installing libutempter-0:1.2. 100% |  57.9 MiB/s |  59.3 KiB |  00m00s
[ 75/156] Installing zip-0:3.0-41.fc41. 100% | 245.5 MiB/s | 754.1 KiB |  00m00s
[ 76/156] Installing gdbm-1:1.23-7.fc41 100% | 159.1 MiB/s | 488.8 KiB |  00m00s
[ 77/156] Installing cyrus-sasl-lib-0:2 100% | 265.4 MiB/s |   2.4 MiB |  00m00s
[ 78/156] Installing libfdisk-0:2.40.2- 100% | 193.3 MiB/s | 395.9 KiB |  00m00s
[ 79/156] Installing bzip2-0:1.0.8-19.f 100% | 101.3 MiB/s | 103.7 KiB |  00m00s
[ 80/156] Installing libxml2-0:2.12.8-2 100% | 234.9 MiB/s |   1.9 MiB |  00m00s
[ 81/156] Installing add-determinism-0: 100% | 255.6 MiB/s |   3.1 MiB |  00m00s
[ 82/156] Installing build-reproducibil 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 83/156] Installing sqlite-libs-0:3.46 100% | 226.6 MiB/s |   1.6 MiB |  00m00s
[ 84/156] Installing ed-0:1.20.2-2.fc41 100% | 149.3 MiB/s | 152.9 KiB |  00m00s
[ 85/156] Installing patch-0:2.7.6-25.f 100% | 292.8 MiB/s | 299.9 KiB |  00m00s
[ 86/156] Installing elfutils-default-y 100% | 681.0 KiB/s |   2.0 KiB |  00m00s
>>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.n
>>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.noar
[ 87/156] Installing elfutils-libs-0:0. 100% | 182.6 MiB/s | 747.8 KiB |  00m00s
[ 88/156] Installing cpio-0:2.15-2.fc41 100% | 223.8 MiB/s |   1.1 MiB |  00m00s
[ 89/156] Installing diffutils-0:3.10-7 100% | 232.6 MiB/s |   1.6 MiB |  00m00s
[ 90/156] Installing libpkgconf-0:2.1.1 100% |  85.0 MiB/s |  87.0 KiB |  00m00s
[ 91/156] Installing pkgconf-0:2.1.1-2. 100% |  87.0 MiB/s |  89.1 KiB |  00m00s
[ 92/156] Installing keyutils-libs-0:1. 100% |   0.0   B/s |  55.6 KiB |  00m00s
[ 93/156] Installing libverto-0:0.3.2-9 100% |   0.0   B/s |  31.1 KiB |  00m00s
[ 94/156] Installing jansson-0:2.13.1-1 100% |  91.3 MiB/s |  93.5 KiB |  00m00s
[ 95/156] Installing libgomp-0:14.1.1-7 100% | 260.1 MiB/s | 532.6 KiB |  00m00s
[ 96/156] Installing libffi-0:3.4.6-2.f 100% |  65.8 MiB/s |  67.3 KiB |  00m00s
[ 97/156] Installing p11-kit-0:0.25.5-3 100% | 227.6 MiB/s |   2.5 MiB |  00m00s
[ 98/156] Installing p11-kit-trust-0:0. 100% |  77.6 MiB/s | 476.8 KiB |  00m00s
>>> Running post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.s390x
>>> Stop post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.s390x
[ 99/156] Installing openssl-libs-1:3.2 100% | 245.5 MiB/s |   6.1 MiB |  00m00s
[100/156] Installing coreutils-0:9.5-7. 100% | 262.6 MiB/s |   6.0 MiB |  00m00s
>>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.n
>>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar
[101/156] Installing ca-certificates-0: 100% |   2.4 MiB/s |   2.4 MiB |  00m01s
>>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.
>>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noa
[102/156] Installing krb5-libs-0:1.21.3 100% | 204.4 MiB/s |   2.5 MiB |  00m00s
[103/156] Installing libarchive-0:3.7.4 100% | 248.2 MiB/s |   1.0 MiB |  00m00s
[104/156] Installing libtirpc-0:1.3.5-0 100% | 215.2 MiB/s | 220.3 KiB |  00m00s
[105/156] Installing gzip-0:1.13-2.fc41 100% | 198.4 MiB/s | 406.3 KiB |  00m00s
[106/156] Installing authselect-libs-0: 100% | 163.0 MiB/s | 834.5 KiB |  00m00s
[107/156] Installing cracklib-0:2.9.11- 100% |  85.1 MiB/s | 261.4 KiB |  00m00s
[108/156] Installing libpwquality-0:1.4 100% | 105.8 MiB/s | 433.3 KiB |  00m00s
[109/156] Installing libnsl2-0:2.0.1-2. 100% |  61.4 MiB/s |  62.8 KiB |  00m00s
[110/156] Installing pam-0:1.6.1-4.fc41 100% | 149.7 MiB/s |   1.8 MiB |  00m00s
[111/156] Installing libssh-0:0.10.6-6. 100% | 259.4 MiB/s | 531.2 KiB |  00m00s
[112/156] Installing rpm-sequoia-0:1.7. 100% | 265.0 MiB/s |   3.2 MiB |  00m00s
[113/156] Installing rpm-libs-0:4.19.92 100% | 264.0 MiB/s | 811.1 KiB |  00m00s
[114/156] Installing rpm-build-libs-0:4 100% | 214.1 MiB/s | 219.3 KiB |  00m00s
[115/156] Installing libevent-0:2.1.12- 100% | 230.1 MiB/s | 942.6 KiB |  00m00s
[116/156] Installing xxhash-libs-0:0.8. 100% |   0.0   B/s |  69.4 KiB |  00m00s
[117/156] Installing libbrotli-0:1.1.0- 100% | 226.4 MiB/s | 927.4 KiB |  00m00s
[118/156] Installing libnghttp2-0:1.62. 100% | 174.9 MiB/s | 179.1 KiB |  00m00s
[119/156] Installing libtool-ltdl-0:2.4 100% |   0.0   B/s |  75.1 KiB |  00m00s
[120/156] Installing openldap-0:2.6.8-5 100% | 223.8 MiB/s | 687.4 KiB |  00m00s
[121/156] Installing libcurl-0:8.9.0-1. 100% | 211.7 MiB/s | 867.2 KiB |  00m00s
[122/156] Installing elfutils-debuginfo 100% |  64.7 MiB/s |  66.3 KiB |  00m00s
[123/156] Installing binutils-0:2.42.50 100% | 288.0 MiB/s |  26.8 MiB |  00m00s
>>> Running post-install scriptlet: binutils-0:2.42.50-20.fc41.s390x
>>> Stop post-install scriptlet: binutils-0:2.42.50-20.fc41.s390x
[124/156] Installing elfutils-0:0.191-8 100% | 296.7 MiB/s |   3.0 MiB |  00m00s
[125/156] Installing gdb-minimal-0:14.2 100% | 272.0 MiB/s |  13.1 MiB |  00m00s
[126/156] Installing debugedit-0:5.0-17 100% | 200.7 MiB/s | 205.5 KiB |  00m00s
[127/156] Installing curl-0:8.9.0-1.fc4 100% |  80.7 MiB/s | 826.7 KiB |  00m00s
>>> Running pre-install scriptlet: rpm-0:4.19.92-5.fc41.s390x
>>> Stop pre-install scriptlet: rpm-0:4.19.92-5.fc41.s390x
[128/156] Installing rpm-0:4.19.92-5.fc 100% | 155.8 MiB/s |   2.5 MiB |  00m00s
[129/156] Installing efi-srpm-macros-0: 100% |   0.0   B/s |  41.2 KiB |  00m00s
[130/156] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[131/156] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[132/156] Installing pkgconf-m4-0:2.1.1 100% |   0.0   B/s |  14.3 KiB |  00m00s
[133/156] Installing pkgconf-pkg-config 100% |   0.0   B/s |   1.8 KiB |  00m00s
[134/156] Installing rust-srpm-macros-0 100% |   0.0   B/s |   5.6 KiB |  00m00s
[135/156] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[136/156] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[137/156] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[138/156] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[139/156] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[140/156] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[141/156] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[142/156] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[143/156] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[144/156] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[145/156] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[146/156] Installing fonts-srpm-macros- 100% |   0.0   B/s |  57.0 KiB |  00m00s
[147/156] Installing forge-srpm-macros- 100% |   0.0   B/s |  40.3 KiB |  00m00s
[148/156] Installing go-srpm-macros-0:3 100% |   0.0   B/s |  62.0 KiB |  00m00s
[149/156] Installing python-srpm-macros 100% |   0.0   B/s |  52.2 KiB |  00m00s
[150/156] Installing redhat-rpm-config- 100% |  92.8 MiB/s | 190.1 KiB |  00m00s
[151/156] Installing rpm-build-0:4.19.9 100% | 100.1 MiB/s | 205.0 KiB |  00m00s
[152/156] Installing pyproject-srpm-mac 100% |   2.4 MiB/s |   2.5 KiB |  00m00s
[153/156] Installing util-linux-0:2.40. 100% | 157.0 MiB/s |   3.8 MiB |  00m00s
>>> Running post-install scriptlet: util-linux-0:2.40.2-4.fc41.s390x
>>> Stop post-install scriptlet: util-linux-0:2.40.2-4.fc41.s390x
[154/156] Installing authselect-0:1.5.0 100% |  77.0 MiB/s | 157.7 KiB |  00m00s
[155/156] Installing which-0:2.21-42.fc 100% |  84.1 MiB/s |  86.1 KiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[156/156] Installing info-0:7.1-3.fc41. 100% | 336.0 KiB/s | 405.5 KiB |  00m01s
>>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.s390x
>>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.s390x
>>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f
>>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41
>>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.s390x
>>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.s390x
>>> Running post-transaction scriptlet: rpm-0:4.19.92-5.fc41.s390x
>>> Stop post-transaction scriptlet: rpm-0:4.19.92-5.fc41.s390x
>>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-35.fc41.s390x
>>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-35.fc41.s390x
>>> Running trigger-install scriptlet: info-0:7.1-3.fc41.s390x
>>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.s390x
Complete!
Warning: skipped PGP checks for 154 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.3.5-1.fc41.s390x
alternatives-1.28-3.fc41.s390x
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.0.1-4.fc41.s390x
authselect-1.5.0-7.fc41.s390x
authselect-libs-1.5.0-7.fc41.s390x
basesystem-11-21.fc41.noarch
bash-5.2.26-4.fc41.s390x
binutils-2.42.50-20.fc41.s390x
build-reproducibility-srpm-macros-0.3.5-1.fc41.noarch
bzip2-1.0.8-19.fc41.s390x
bzip2-libs-1.0.8-19.fc41.s390x
ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch
coreutils-9.5-7.fc41.s390x
coreutils-common-9.5-7.fc41.s390x
cpio-2.15-2.fc41.s390x
cracklib-2.9.11-6.fc41.s390x
crypto-policies-20240717-2.git154fd4e.fc41.noarch
curl-8.9.0-1.fc41.s390x
cyrus-sasl-lib-2.1.28-27.fc41.s390x
debugedit-5.0-17.fc41.s390x
diffutils-3.10-7.fc41.s390x
dwz-0.15-7.fc41.s390x
ed-1.20.2-2.fc41.s390x
efi-srpm-macros-5-12.fc41.noarch
elfutils-0.191-8.fc41.s390x
elfutils-debuginfod-client-0.191-8.fc41.s390x
elfutils-default-yama-scope-0.191-8.fc41.noarch
elfutils-libelf-0.191-8.fc41.s390x
elfutils-libs-0.191-8.fc41.s390x
fedora-gpg-keys-41-0.2.noarch
fedora-release-41-0.16.noarch
fedora-release-common-41-0.16.noarch
fedora-release-identity-basic-41-0.16.noarch
fedora-repos-41-0.2.noarch
fedora-repos-rawhide-41-0.2.noarch
file-5.45-7.fc41.s390x
file-libs-5.45-7.fc41.s390x
filesystem-3.18-23.fc41.s390x
findutils-4.10.0-4.fc41.s390x
fonts-srpm-macros-2.0.5-17.fc41.noarch
forge-srpm-macros-0.3.1-2.fc41.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.s390x
gdb-minimal-14.2-15.fc41.s390x
gdbm-1.23-7.fc41.s390x
gdbm-libs-1.23-7.fc41.s390x
ghc-srpm-macros-1.9.1-2.fc41.noarch
glibc-2.39.9000-35.fc41.s390x
glibc-common-2.39.9000-35.fc41.s390x
glibc-gconv-extra-2.39.9000-35.fc41.s390x
glibc-minimal-langpack-2.39.9000-35.fc41.s390x
gmp-6.3.0-2.fc41.s390x
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.6.0-3.fc41.noarch
grep-3.11-9.fc41.s390x
gzip-1.13-2.fc41.s390x
info-7.1-3.fc41.s390x
jansson-2.13.1-10.fc41.s390x
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc41.s390x
krb5-libs-1.21.3-2.fc41.s390x
libacl-2.3.2-2.fc41.s390x
libarchive-3.7.4-3.fc41.s390x
libattr-2.5.2-4.fc41.s390x
libblkid-2.40.2-4.fc41.s390x
libbrotli-1.1.0-5.fc41.s390x
libcap-2.70-4.fc41.s390x
libcap-ng-0.8.5-3.fc41.s390x
libcom_err-1.47.1-3.fc41.s390x
libcurl-8.9.0-1.fc41.s390x
libeconf-0.6.2-3.fc41.s390x
libevent-2.1.12-14.fc41.s390x
libfdisk-2.40.2-4.fc41.s390x
libffi-3.4.6-2.fc41.s390x
libgcc-14.1.1-7.fc41.s390x
libgomp-14.1.1-7.fc41.s390x
libidn2-2.3.7-2.fc41.s390x
libmount-2.40.2-4.fc41.s390x
libnghttp2-1.62.1-2.fc41.s390x
libnsl2-2.0.1-2.fc41.s390x
libpkgconf-2.1.1-2.fc41.s390x
libpsl-0.21.5-4.fc41.s390x
libpwquality-1.4.5-11.fc41.s390x
libselinux-3.7-5.fc41.s390x
libsemanage-3.7-2.fc41.s390x
libsepol-3.7-2.fc41.s390x
libsmartcols-2.40.2-4.fc41.s390x
libssh-0.10.6-6.fc41.s390x
libssh-config-0.10.6-6.fc41.noarch
libstdc++-14.1.1-7.fc41.s390x
libtasn1-4.19.0-9.fc41.s390x
libtirpc-1.3.5-0.fc41.s390x
libtool-ltdl-2.4.7-12.fc41.s390x
libunistring-1.1-8.fc41.s390x
libutempter-1.2.1-15.fc41.s390x
libuuid-2.40.2-4.fc41.s390x
libverto-0.3.2-9.fc41.s390x
libxcrypt-4.4.36-7.fc41.s390x
libxml2-2.12.8-2.fc41.s390x
libzstd-1.5.6-2.fc41.s390x
lua-libs-5.4.6-6.fc41.s390x
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc41.s390x
mpfr-4.2.1-5.fc41.s390x
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.s390x
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.8-5.fc41.s390x
openssl-libs-3.2.2-5.fc41.s390x
p11-kit-0.25.5-3.fc41.s390x
p11-kit-trust-0.25.5-3.fc41.s390x
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.6.1-4.fc41.s390x
pam-libs-1.6.1-4.fc41.s390x
patch-2.7.6-25.fc41.s390x
pcre2-10.44-1.fc41.1.s390x
pcre2-syntax-10.44-1.fc41.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.1.1-2.fc41.s390x
pkgconf-m4-2.1.1-2.fc41.noarch
pkgconf-pkg-config-2.1.1-2.fc41.s390x
popt-1.19-7.fc41.s390x
publicsuffix-list-dafsa-20240107-4.fc41.noarch
pyproject-srpm-macros-1.14.0-1.fc41.noarch
python-srpm-macros-3.13-3.fc41.noarch
qt5-srpm-macros-5.15.14-3.fc41.noarch
qt6-srpm-macros-6.7.2-3.fc41.noarch
readline-8.2-9.fc41.s390x
redhat-rpm-config-293-1.fc41.noarch
rpm-4.19.92-5.fc41.s390x
rpm-build-4.19.92-5.fc41.s390x
rpm-build-libs-4.19.92-5.fc41.s390x
rpm-libs-4.19.92-5.fc41.s390x
rpm-sequoia-1.7.0-2.fc41.s390x
rust-srpm-macros-26.3-1.fc41.noarch
sed-4.9-3.fc41.s390x
setup-2.15.0-5.fc41.noarch
shadow-utils-4.15.1-9.fc41.s390x
sqlite-libs-3.46.0-3.fc41.s390x
systemd-libs-256.4-1.fc41.s390x
tar-1.35-4.fc41.s390x
unzip-6.0-64.fc41.s390x
util-linux-2.40.2-4.fc41.s390x
util-linux-core-2.40.2-4.fc41.s390x
which-2.21-42.fc41.s390x
xxhash-libs-0.8.2-3.fc41.s390x
xz-5.6.2-2.fc41.s390x
xz-libs-5.6.2-2.fc41.s390x
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-41.fc41.s390x
zlib-ng-compat-2.1.7-2.fc41.s390x
zstd-1.5.6-2.fc41.s390x
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1721952000
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-21.fc41.src.rpm
Finish: rpmbuild -bs
cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-s390x-1721949977.378463/root/var/log’: No such file or directory
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1721949977.378463/root/var/log/dnf5.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-beql7hc3/mmseq/mmseq.spec) Config(child) 1 minutes 21 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-21.fc41.src.rpm)  Config(fedora-rawhide-s390x)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1721949977.378463/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1721949977.378463/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1721949977.378463/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.92-5.fc41.s390x
  rpm-sequoia-1.7.0-2.fc41.s390x
  dnf5-5.2.5.0-1.fc41.s390x
  dnf5-plugins-5.2.5.0-1.fc41.s390x
Finish: chroot init
Start: build phase for mmseq-1.0.11-21.fc41.src.rpm
Start: build setup for mmseq-1.0.11-21.fc41.src.rpm
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1721952000
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-21.fc41.src.rpm
Updating and loading repositories:
 Copr repository                        100% |  10.2 KiB/s |   1.5 KiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% | 201.5 KiB/s |   3.8 KiB |  00m00s
 fedora                                 100% |  23.8 KiB/s |   5.2 KiB |  00m00s
Repositories loaded.
Package                      Arch   Version              Repository                                                         Size
Installing:
 armadillo-devel             s390x  12.8.1-3.fc41        copr_base                                                       7.3 MiB
 boost-devel                 s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 143.0 MiB
 flexiblas-devel             s390x  3.4.4-2.fc41         copr_base                                                       4.7 MiB
 gcc-c++                     s390x  14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.7 MiB
 gsl-devel                   s390x  2.7.1-9.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 htslib-devel                s390x  1.15.1-6.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 411.0 KiB
 make                        s390x  1:4.4.1-8.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 perl-generators             noarch 1.16-6.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  21.8 KiB
 zlib-ng-compat-devel        s390x  2.1.7-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.8 KiB
Installing dependencies:
 SuperLU                     s390x  6.0.1-6.fc41         copr_base                                                     586.1 KiB
 SuperLU-devel               s390x  6.0.1-6.fc41         copr_base                                                     102.2 KiB
 annobin-docs                noarch 12.62-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  96.5 KiB
 annobin-plugin-gcc          s390x  12.62-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 977.1 KiB
 armadillo                   s390x  12.8.1-3.fc41        copr_base                                                     146.8 KiB
 arpack                      s390x  3.9.1-4.fc41         copr_base                                                     633.5 KiB
 arpack-devel                s390x  3.9.1-4.fc41         copr_base                                                      69.1 KiB
 autoconf                    noarch 2.72-3.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.8 MiB
 automake                    noarch 1.16.5-17.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 boost                       s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 KiB
 boost-atomic                s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  20.7 KiB
 boost-chrono                s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  41.2 KiB
 boost-container             s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  69.2 KiB
 boost-context               s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  16.3 KiB
 boost-contract              s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.4 KiB
 boost-coroutine             s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  20.9 KiB
 boost-date-time             s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  16.1 KiB
 boost-fiber                 s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  86.1 KiB
 boost-filesystem            s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 150.7 KiB
 boost-graph                 s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 369.2 KiB
 boost-iostreams             s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  94.0 KiB
 boost-json                  s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 363.9 KiB
 boost-locale                s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 631.1 KiB
 boost-log                   s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 boost-math                  s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 713.5 KiB
 boost-nowide                s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  24.7 KiB
 boost-numpy3                s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.2 KiB
 boost-program-options       s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 291.3 KiB
 boost-python3               s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 256.3 KiB
 boost-random                s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  33.4 KiB
 boost-regex                 s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 302.0 KiB
 boost-serialization         s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 474.8 KiB
 boost-stacktrace            s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  63.2 KiB
 boost-system                s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  16.1 KiB
 boost-test                  s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 675.8 KiB
 boost-thread                s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 140.1 KiB
 boost-timer                 s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  24.8 KiB
 boost-type_erasure          s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  61.8 KiB
 boost-wave                  s390x  1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 689.9 KiB
 cmake-filesystem            s390x  3.28.3-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 cpp                         s390x  14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  25.5 MiB
 emacs-filesystem            noarch 1:30.0-3.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 expat                       s390x  2.6.2-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 316.4 KiB
 flexiblas                   s390x  3.4.4-2.fc41         copr_base                                                      48.5 KiB
 flexiblas-netlib            s390x  3.4.4-2.fc41         copr_base                                                      12.2 MiB
 flexiblas-netlib64          s390x  3.4.4-2.fc41         copr_base                                                      12.2 MiB
 flexiblas-openblas-openmp   s390x  3.4.4-2.fc41         copr_base                                                      39.2 KiB
 flexiblas-openblas-openmp64 s390x  3.4.4-2.fc41         copr_base                                                      39.2 KiB
 gcc                         s390x  14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  76.5 MiB
 gcc-gfortran                s390x  14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  27.5 MiB
 gcc-plugin-annobin          s390x  14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  56.8 KiB
 glibc-devel                 s390x  2.39.9000-35.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 467.7 KiB
 glibc-headers-s390          noarch 2.39.9000-35.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 MiB
 groff-base                  s390x  1.23.0-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.3 MiB
 gsl                         s390x  2.7.1-9.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.7 MiB
 hdf5                        s390x  1.12.1-20.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.1 MiB
 hdf5-devel                  s390x  1.12.1-20.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.8 MiB
 htslib                      s390x  1.15.1-6.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 kernel-headers              s390x  6.10.0-64.fc41.1     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.3 MiB
 libaec                      s390x  1.1.2-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 109.6 KiB
 libaec-devel                s390x  1.1.2-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.9 KiB
 libasan                     s390x  14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 libatomic                   s390x  14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  32.4 KiB
 libb2                       s390x  0.98.1-12.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  42.0 KiB
 libgfortran                 s390x  14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 MiB
 libicu                      s390x  74.2-2.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.3 MiB
 libicu-devel                s390x  74.2-2.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.6 MiB
 libmpc                      s390x  1.3.1-6.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 164.5 KiB
 libstdc++-devel             s390x  14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.1 MiB
 libubsan                    s390x  14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 491.2 KiB
 libxcrypt-devel             s390x  4.4.36-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  30.3 KiB
 m4                          s390x  1.4.19-10.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 628.5 KiB
 metis                       s390x  5.1.0.3-6.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 mpdecimal                   s390x  2.5.1-16.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 224.7 KiB
 ncurses                     s390x  6.5-2.20240629.fc41  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 641.5 KiB
 openblas                    s390x  0.3.26-5.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  96.0 KiB
 openblas-openmp             s390x  0.3.26-5.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.2 MiB
 openblas-openmp64           s390x  0.3.26-5.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.2 MiB
 perl-AutoLoader             noarch 5.74-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  20.5 KiB
 perl-B                      s390x  1.89-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 517.8 KiB
 perl-Carp                   noarch 1.54-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  46.6 KiB
 perl-Class-Struct           noarch 0.68-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  25.4 KiB
 perl-Data-Dumper            s390x  2.189-512.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 115.5 KiB
 perl-Digest                 noarch 1.20-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.3 KiB
 perl-Digest-MD5             s390x  2.59-5.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  59.6 KiB
 perl-DynaLoader             s390x  1.56-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  32.1 KiB
 perl-Encode                 s390x  4:3.21-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.6 MiB
 perl-Errno                  s390x  1.38-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.4 KiB
 perl-Exporter               noarch 5.78-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  54.3 KiB
 perl-Fcntl                  s390x  1.18-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  56.8 KiB
 perl-Fedora-VSP             noarch 0.001-35.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.7 KiB
 perl-File-Basename          noarch 2.86-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  14.0 KiB
 perl-File-Compare           noarch 1.100.800-511.fc41   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.6 KiB
 perl-File-Copy              noarch 2.41-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.6 KiB
 perl-File-Find              noarch 1.44-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  41.9 KiB
 perl-File-Path              noarch 2.18-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  63.5 KiB
 perl-File-Temp              noarch 1:0.231.100-511.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 162.3 KiB
 perl-File-stat              noarch 1.14-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.5 KiB
 perl-FileHandle             noarch 2.05-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.3 KiB
 perl-Getopt-Long            noarch 1:2.58-2.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.5 KiB
 perl-Getopt-Std             noarch 1.14-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.2 KiB
 perl-HTTP-Tiny              noarch 0.088-512.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 152.2 KiB
 perl-IO                     s390x  1.55-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 150.8 KiB
 perl-IO-Socket-IP           noarch 0.42-512.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  98.7 KiB
 perl-IO-Socket-SSL          noarch 2.088-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 701.1 KiB
 perl-IPC-Open3              noarch 1.22-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.5 KiB
 perl-MIME-Base64            s390x  3.16-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  45.9 KiB
 perl-Mozilla-CA             noarch 20240313-2.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.5 KiB
 perl-Net-SSLeay             s390x  1.94-7.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 perl-POSIX                  s390x  2.20-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 250.9 KiB
 perl-PathTools              s390x  3.91-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 179.8 KiB
 perl-Pod-Escapes            noarch 1:1.07-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  24.9 KiB
 perl-Pod-Perldoc            noarch 3.28.01-512.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 163.7 KiB
 perl-Pod-Simple             noarch 1:3.45-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 560.9 KiB
 perl-Pod-Usage              noarch 4:2.03-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  84.8 KiB
 perl-Scalar-List-Utils      s390x  5:1.63-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.4 KiB
 perl-SelectSaver            noarch 1.02-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 perl-Socket                 s390x  4:2.038-511.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 127.8 KiB
 perl-Storable               s390x  1:3.32-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 232.2 KiB
 perl-Symbol                 noarch 1.09-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.8 KiB
 perl-Term-ANSIColor         noarch 5.01-512.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  97.5 KiB
 perl-Term-Cap               noarch 1.18-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.3 KiB
 perl-Text-ParseWords        noarch 3.31-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.6 KiB
 perl-Text-Tabs+Wrap         noarch 2024.001-511.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.6 KiB
 perl-Thread-Queue           noarch 3.14-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.9 KiB
 perl-Time-Local             noarch 2:1.350-511.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  69.0 KiB
 perl-URI                    noarch 5.28-2.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 240.7 KiB
 perl-base                   noarch 2.27-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.5 KiB
 perl-constant               noarch 1.33-512.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  26.2 KiB
 perl-if                     noarch 0.61.000-511.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.8 KiB
 perl-interpreter            s390x  4:5.40.0-511.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 122.1 KiB
 perl-libnet                 noarch 3.15-512.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 289.4 KiB
 perl-libs                   s390x  4:5.40.0-511.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  10.2 MiB
 perl-locale                 noarch 1.12-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.5 KiB
 perl-macros                 noarch 4:5.40.0-511.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.5 KiB
 perl-mro                    s390x  1.29-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  45.4 KiB
 perl-overload               noarch 1.37-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  71.5 KiB
 perl-overloading            noarch 0.02-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.8 KiB
 perl-parent                 noarch 1:0.241-511.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.8 KiB
 perl-podlators              noarch 1:6.0.2-2.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 317.5 KiB
 perl-threads                s390x  1:2.40-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 114.9 KiB
 perl-threads-shared         s390x  1.69-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  83.5 KiB
 perl-vars                   noarch 1.05-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.9 KiB
 python-pip-wheel            noarch 24.1.1-2.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 python3                     s390x  3.13.0~b4-2.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  31.6 KiB
 python3-libs                s390x  3.13.0~b4-2.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  41.0 MiB
 python3-numpy               s390x  1:1.26.4-8.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  41.8 MiB
 tzdata                      noarch 2024a-9.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB

Transaction Summary:
 Installing:      157 packages

Total size of inbound packages is 151 MiB. Need to download 151 MiB.
After this operation 594 MiB will be used (install 594 MiB, remove 0 B).
[  1/157] flexiblas-devel-0:3.4.4-2.fc4 100% |   1.1 MiB/s | 112.2 KiB |  00m00s
[  2/157] boost-devel-0:1.83.0-8.fc41.s 100% |  77.8 MiB/s |  11.7 MiB |  00m00s
[  3/157] gsl-devel-0:2.7.1-9.fc41.s390 100% |  59.5 MiB/s | 609.4 KiB |  00m00s
[  4/157] htslib-devel-0:1.15.1-6.fc41. 100% |   1.9 MiB/s |  99.0 KiB |  00m00s
[  5/157] make-1:4.4.1-8.fc41.s390x     100% |  53.0 MiB/s | 597.4 KiB |  00m00s
[  6/157] perl-generators-0:1.16-6.fc41 100% |   3.2 MiB/s |  16.5 KiB |  00m00s
[  7/157] zlib-ng-compat-devel-0:2.1.7- 100% |   6.2 MiB/s |  38.1 KiB |  00m00s
[  8/157] armadillo-0:12.8.1-3.fc41.s39 100% | 636.4 KiB/s |  36.9 KiB |  00m00s
[  9/157] cmake-filesystem-0:3.28.3-7.f 100% |   3.0 MiB/s |  18.2 KiB |  00m00s
[ 10/157] perl-Fedora-VSP-0:0.001-35.fc 100% |   5.6 MiB/s |  23.0 KiB |  00m00s
[ 11/157] perl-File-Basename-0:2.86-511 100% |   4.2 MiB/s |  17.1 KiB |  00m00s
[ 12/157] perl-interpreter-4:5.40.0-511 100% |  10.1 MiB/s |  72.1 KiB |  00m00s
[ 13/157] perl-macros-4:5.40.0-511.fc41 100% |   2.0 MiB/s |  12.3 KiB |  00m00s
[ 14/157] perl-Carp-0:1.54-511.fc41.noa 100% |   5.6 MiB/s |  28.9 KiB |  00m00s
[ 15/157] perl-Exporter-0:5.78-511.fc41 100% |   7.5 MiB/s |  30.9 KiB |  00m00s
[ 16/157] armadillo-devel-0:12.8.1-3.fc 100% | 417.4 KiB/s |   2.0 MiB |  00m05s
[ 17/157] perl-libs-4:5.40.0-511.fc41.s 100% | 516.4 KiB/s |   2.4 MiB |  00m05s
[ 18/157] gcc-c++-0:14.1.1-7.fc41.s390x 100% |   2.4 MiB/s |  11.8 MiB |  00m05s
[ 19/157] htslib-0:1.15.1-6.fc41.s390x  100% |  12.2 MiB/s | 535.0 KiB |  00m00s
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[ 92/157] perl-overload-0:1.37-511.fc41 100% |  11.1 MiB/s |  45.5 KiB |  00m00s
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--------------------------------------------------------------------------------
[157/157] Total                         100% |  25.3 MiB/s | 150.5 MiB |  00m06s
Running transaction
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>>> Running pre-install scriptlet: groff-base-0:1.23.0-7.fc41.s390x
>>> Stop pre-install scriptlet: groff-base-0:1.23.0-7.fc41.s390x
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>>> Running post-install scriptlet: groff-base-0:1.23.0-7.fc41.s390x
>>> Stop post-install scriptlet: groff-base-0:1.23.0-7.fc41.s390x
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[130/159] Installing emacs-filesystem-1 100% |   0.0   B/s | 544.0   B |  00m00s
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[147/159] Installing htslib-0:1.15.1-6. 100% | 236.8 MiB/s |   1.2 MiB |  00m00s
[148/159] Installing make-1:4.4.1-8.fc4 100% | 232.8 MiB/s |   1.9 MiB |  00m00s
[149/159] Installing gcc-0:14.1.1-7.fc4 100% | 299.0 MiB/s |  76.5 MiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
[150/159] Installing gcc-gfortran-0:14. 100% | 259.1 MiB/s |  27.5 MiB |  00m00s
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[153/159] Installing gcc-c++-0:14.1.1-7 100% | 278.9 MiB/s |  28.7 MiB |  00m00s
[154/159] Installing annobin-plugin-gcc 100% |  79.6 MiB/s | 978.7 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
[155/159] Installing gcc-plugin-annobin 100% |   5.7 MiB/s |  58.4 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
[156/159] Installing htslib-devel-0:1.1 100% | 202.9 MiB/s | 415.4 KiB |  00m00s
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warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[159/159] Installing perl-generators-0: 100% | 150.6 KiB/s |  23.2 KiB |  00m00s
>>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-35.fc41.s390x
>>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-35.fc41.s390x
>>> Running trigger-install scriptlet: info-0:7.1-3.fc41.s390x
>>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.s390x
Complete!
Warning: skipped PGP checks for 157 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch
Finish: build setup for mmseq-1.0.11-21.fc41.src.rpm
Start: rpmbuild mmseq-1.0.11-21.fc41.src.rpm
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1721952000
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.7b2szC
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Sb5CQH
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf mmseq-1.0.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.11
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #2 (mmseq-zlib.patch):
+ echo 'Patch #2 (mmseq-zlib.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
+ rm -f bin/offsetGTF-linux bin/postdiff-linux
+ sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.osm66W
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ cd src
+ make -j2 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp 
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection    -c -o fasta.o fasta.c
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -O3 offsetGTF.cpp -o ../bin/offsetGTF
offsetGTF.cpp: In function ‘int main(int, char**)’:
offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  115 |       while(gff_ind < gff_positions[chrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  117 |               pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable ‘curoff’ [-Wunused-variable]
  114 |       int curoff=offset;
      |           ^~~~~~
offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  150 |       while(gff_ind < gff_positions[prevchrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  163 |           pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  177 |     while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
      |           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  235 |     for(int i=5; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  237 |       if(i < tokens.size()-1) {
      |          ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable ‘gff_pos’ [-Wunused-variable]
  108 |   int gff_pos= -1;
      |       ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -O3 t2g_hits.cpp -o ../bin/t2g_hits
t2g_hits.cpp: In function ‘int main(int, char**)’:
t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   90 |         for(int i=2; i < tokens.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~
t2g_hits.cpp:112:13: warning: ignoring return value of ‘_FIter std::unique(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<__cxx11::basic_string<char>*, vector<__cxx11::basic_string<char> > >]’, declared with attribute ‘nodiscard’ [-Wunused-result]
  112 |       unique(comb.begin(), comb.end());
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
                 from t2g_hits.cpp:27:
/usr/include/c++/14/bits/stl_algo.h:891:5: note: declared here
  891 |     unique(_ForwardIterator __first, _ForwardIterator __last)
      |     ^~~~~~
g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
mmcollapse.cpp: In function ‘void get_unidentifiable_transcripts(std::string, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, bool>&)’:
mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  158 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  213 |     for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  259 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
mmcollapse.cpp: In function ‘void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)’:
mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  400 |   for(int s=0; s < R.n_slices; s++) {
      |                ~~^~~~~~~~~~~~
mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  401 |     for(int t=0; t < candidates.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  402 |       for(int j=1; j < indexes.size(); j++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  414 |     for(int j=1; j < indexes.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  417 |       for(int i=0; i < R.n_cols; i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  426 |   for(int i=0; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |   for(int i=1; i < tset.size(); i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  437 |   for(int i=1; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >)’:
mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  445 |   for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
      |                ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  452 |   for(int c=0; c < candidates.size(); c++) {
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  456 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  464 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  469 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  476 |   for(int i=0; i < toshed.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)’:
mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  486 |     for(int v= 0; v < R.n_rows; v++) {
      |                   ~~^~~~~~~~~~
mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
  492 |       for(int i=0; i < u.size(); i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp: In function ‘void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&)’:
mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  519 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  543 |         for(int t=0; t < tokens.size(); t++) {
      |                      ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘int main(int, char**)’:
mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  632 |   for(int i=1; i < basenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  691 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  707 |   for(int i=0; i < candidates.size(); i++) ts.push_back(i);
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  732 |     for(int i=0 ;i < maxcorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  738 |     for(int i=0 ;i < mincorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  802 |         for(int i=0 ;i < maxcorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  808 |         for(int i=0 ;i < mincorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  827 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  852 |       for(int t=0; t < tokens.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  882 |       for(int t=0; t < tokens2.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  934 |     for(int t=0; t < M.n_cols; t++) {
      |                  ~~^~~~~~~~~~
mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  963 |     for(int i=1; i < tokens2.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  976 |       if(MM.size1() < i+1 ) factor1=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  977 |       if(MM.size2() < j+1 ) factor2=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1010 |     for(int t=0; t < ids.size(); t++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1083 |     for(int i=0; i < ids.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1092 |     for(int v = 0; v < M.n_cols; v++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:840:9: warning: unused variable ‘isident’ [-Wunused-variable]
  840 |     int isident=0;
      |         ^~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
mmseq.cpp: In function ‘std::vector<double> meanvar(std::vector<double>, double, double)’:
mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  130 |   for(int i=0;i < v.size(); i++) {
      |               ~~^~~~~~~~~~
mmseq.cpp: In function ‘int main(int, char**)’:
mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  244 |       for(int i=0; i < tokens.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~
mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  423 |       if(M.size1() < m ) factor1=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  424 |       if(M.size2() < n ) factor2=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  594 |   for(unsigned t=0; t < n; t++)  {
      |                     ~~^~~
mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  736 |     for(unsigned t=0; t < n; t++)
      |                       ~~^~~
mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  765 |       for(unsigned t=0; t < n; t++)
      |                         ~~^~~
mmseq.cpp:774:11: warning: unused variable ‘threadid’ [-Wunused-variable]
  774 |       int threadid=OMP_GET_THREAD_NUM;
      |           ^~~~~~~~
mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  829 |   for(unsigned t=0; t < n; t++)
      |                     ~~^~~
mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  912 |       for(unsigned t=0; t < n; t++) {
      |                         ~~^~~
mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  940 |   for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  961 |   for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1098 |   for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
      |                     ~~^~~
mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1112 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1136 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1144 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1149 |   for(int i=0;i < identical_transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1156 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1161 |   for(int i=0;i < gene2transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1168 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1179 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1189 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1208 |     for(int t=0; t < identical_transcripts.size() ; t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1212 |     for(int t=0; t < gene2transcripts.size(); t++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1226 |   for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1227 |   for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1330 |   for(int t=0; t < identical_transcripts.size(); t++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1349 |   for(int g=0; g < gene2transcripts.size(); g++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1473 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1475 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1482 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1484 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1506 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1508 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1514 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1516 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1536 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1538 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1544 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1546 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1560 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1562 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1582 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1584 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1599 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1601 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1619 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1621 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1644 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1646 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1656 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1658 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:308:8: warning: unused variable ‘buf16384’ [-Wunused-variable]
  308 |   char buf16384[16384];
      |        ^~~~~~~~
mmseq.cpp:391:8: warning: variable ‘doublehit’ set but not used [-Wunused-but-set-variable]
  391 |   bool doublehit;
      |        ^~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
bam2hits.cpp: In function ‘void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)’:
bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  109 |   for(int i=0; i < sortedfastas.size()-1; i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  119 |       for(int j=0; j < curSet.size()-1; j++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  137 |   for(int j=0; j < curSet.size()-1; j++) {
      |                ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp: In function ‘std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)’:
bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Alignment>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |   for(int j=0; j < alns.size(); j++) {
      |                ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  219 |     if(i < torem.size() && j==torem[i]) {
      |        ~~^~~~~~~~~~~~~~
bam2hits.cpp: In function ‘int main(int, char**)’:
bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  518 |         if(_B != tg[0].size()-2) {
      |            ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  520 |           if(_A == tg[0].size()-2) {
      |              ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  522 |             if(_A != tg[1].size()-2) {
      |                ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  558 |       for(int i=1; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  609 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  645 |     for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
      |                 ~~^~~~~~~~~~~~~~~
bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  659 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  662 |         for(int j =0; j < fastas[i].seq().size(); j++) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  663 |           int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
      |                                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  791 |       for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  920 |     for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  948 |     for(int i=0; i < testIsizes.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  959 |     for(int i=0; i < heights.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  997 |       for(int fl=1; fl <= (it->seq()).size(); fl++) {
      |                     ~~~^~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:1091:56: warning: comparing the result of pointer addition ‘(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >::operator->()->Alignment::NM()))’ and NULL [-Waddress]
 1091 |             ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM")));
      |                                                        ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
extract_transcripts.cpp: In function ‘int main(int, char**)’:
extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  122 |       for(int i=0; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  169 |     for(int i=0; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  195 |       for(int i=0; i < it->starts()->size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~
extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  203 |       while(faline < stitch.size()) {
      |             ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable ‘line’ [-Wunused-variable]
  108 |   int line=0;
      |       ^~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitstools.cpp: In function ‘void convert(char*, std::string)’:
hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   51 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function ‘int main(int, char**)’:
hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |                 for(int i = 0; i < transcriptName.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  136 |     for(int i = 0; i < transcriptName.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmdiff.cpp: In function ‘void parse_mmseq(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)’:
mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  100 |   for(int i=0; i < filenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  111 |     for(int j=0; j < tokens.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  138 |       if(k + 1 > features.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  147 |       if(k+1 > y.n_rows) {
      |          ~~~~^~~~~~~~~~
mmdiff.cpp:152:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  152 |       if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
      |          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  173 |   if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
      |                                                    ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:94:46: warning: variable ‘mcse_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                              ^~~~~~~~
mmdiff.cpp:94:59: warning: variable ‘iact_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                                           ^~~~~~~~
mmdiff.cpp: In function ‘void apply_normalisation(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, arma::Mat<double>&, arma::Mat<double>&, double)’:
mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  212 |   for(int i=0; i < uh.n_rows; i++) {
      |                ~~^~~~~~~~~~~
mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  214 |     for(int j=0; j < uh.n_cols; j++) {
      |                  ~~^~~~~~~~~~~
mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  230 |   for(int i=0; i < use.size(); i++) {
      |                ~~^~~~~~~~~~~~
mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  232 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  239 |   for(int sample=0; sample < y.n_cols; sample++) {
      |                     ~~~~~~~^~~~~~~~~~
mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  241 |     for(int i=0; i < use.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  246 |     for(int i=0; i < y.n_rows; i++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)’:
mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  257 |   for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
      |                ~^~~~~~~~~~
mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  258 |   for(int i=0; i < y.n_rows; i++) {
      |                ~~^~~~~~~~~~
mmdiff.cpp:259:19: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<int*, vector<int, allocator<int> > >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
  259 |     random_shuffle(randinds.begin(), randinds.end());
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
                 from mmdiff.cpp:31:
/usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here
 4491 |     random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
      |     ^~~~~~~~~~~~~~
mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  260 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void parse_matrices(std::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)’:
mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  310 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function ‘int main(int, char**)’:
mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  420 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  439 |       while(ss < arguments.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  451 |       if(ss != arguments.size()) {
      |          ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  578 |   for(int i=0; i < arguments.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  640 |     for(int i=0; i < simple_de.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:759:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  759 |     if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  764 |     for(int feature=0; feature < features.size(); feature++) {
      |                        ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:837:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  837 |     if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  886 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  898 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string<char>::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare]
  902 |       found2 = found2==string::npos ? -1 : found2;
      |                ~~~~~~^~~~~~~~~~~~~~
mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  907 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  909 |     if(f < samplenames.size()-1) cout << "\t";
      |        ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  914 |   for(int feature=0; feature < features.size(); feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  926 |         for(int l=0; l < M.n_cols; l++) {
      |                      ~~^~~~~~~~~~
mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  936 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  939 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  941 |       if(f < samplenames.size()-1) cout << "\t";
      |          ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  951 |       for(int feature=0; feature < features.size(); feature++) {
      |                          ~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/bin/ld: /tmp/ccPytAVK.ltrans0.ltrans.o: in function `main':
/builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/src/bam2hits.cpp:653:(.text.startup+0x3cc8): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.M7bYZY
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ '[' /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
++ dirname /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ mkdir /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.0.11-21.fc41 --unique-debug-suffix -1.0.11-21.fc41.s390x --unique-debug-src-base mmseq-1.0.11-21.fc41.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11
find-debuginfo: starting
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/mmseq-1.0.11-21.fc41.s390x
542 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
SOURCE_DATE_EPOCH timestamp: 1721952000 (2024-07-26 00:00:00 UTC)
SOURCE_DATE_EPOCH timestamp is in the future: 1721952000 > 1721950155
SOURCE_DATE_EPOCH timestamp: 1721952000 (2024-07-26 00:00:00 UTC)
SOURCE_DATE_EPOCH timestamp is in the future: 1721952000 > 1721950155
SOURCE_DATE_EPOCH timestamp: 1721952000 (2024-07-26 00:00:00 UTC)
SOURCE_DATE_EPOCH timestamp is in the future: 1721952000 > 1721950155
Scanned 12 directories and 40 files,
               processed 0 inodes,
               0 modified (0 replaced + 0 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.XwTqqL
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
++ bin/mmseq --version
++ true
+ test mmseq-1.0.11 = mmseq-1.0.11
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: mmseq-1.0.11-21.fc41.s390x
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.tqyY2P
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd mmseq-1.0.11
+ DOCDIR=/builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/README.md /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/COPYING /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/doc /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: mmseq = 1.0.11-21.fc41 mmseq(s390-64) = 1.0.11-21.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh libboost_iostreams.so.1.83.0()(64bit) libboost_regex.so.1.83.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debugsource-1.0.11-21.fc41.s390x
Provides: mmseq-debugsource = 1.0.11-21.fc41 mmseq-debugsource(s390-64) = 1.0.11-21.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: mmseq-debuginfo-1.0.11-21.fc41.s390x
Provides: debuginfo(build-id) = 363ddf751dfe5a95ece3fb719de65ab36408dc5e debuginfo(build-id) = 51d9ce33837216954fab1455fee5358abca05039 debuginfo(build-id) = 6454f6fc9a23f0964c0d87c0b41d5426b17122ad debuginfo(build-id) = 77c4caefd3774994e6f15329fa90f3142f88cc27 debuginfo(build-id) = 8c1a9b8aca940bd1991084a4bbfd436da2ec4a6b debuginfo(build-id) = c438f7b9deb12cb7fc1257c7dd66a41e91c37284 debuginfo(build-id) = d47e843ddd53c35eb00a76d9595291c5351aa9c7 debuginfo(build-id) = f8375d8904031c1fe1280c7f1a8085dee6beda7a mmseq-debuginfo = 1.0.11-21.fc41 mmseq-debuginfo(s390-64) = 1.0.11-21.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: mmseq-debugsource(s390-64) = 1.0.11-21.fc41
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
Wrote: /builddir/build/RPMS/mmseq-1.0.11-21.fc41.s390x.rpm
Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-21.fc41.s390x.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-21.fc41.s390x.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.0nyLEF
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild mmseq-1.0.11-21.fc41.src.rpm
Finish: build phase for mmseq-1.0.11-21.fc41.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1721949977.378463/root/var/log/dnf5.log
INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-21.fc41.src.rpm) Config(child) 1 minutes 46 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "mmseq-debuginfo",
            "epoch": null,
            "version": "1.0.11",
            "release": "21.fc41",
            "arch": "s390x"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "21.fc41",
            "arch": "src"
        },
        {
            "name": "mmseq-debugsource",
            "epoch": null,
            "version": "1.0.11",
            "release": "21.fc41",
            "arch": "s390x"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "21.fc41",
            "arch": "s390x"
        }
    ]
}
RPMResults finished