Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1ca' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6255564-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.68 PID: 20482 Logging PID: 20483 Task: {'appstream': False, 'background': True, 'build_id': 6255564, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '493f220e687c1ba58e8e9439a90db81bf3fb31b5', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/ProDy', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'ProDy', 'package_version': '2.4.0-4', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--psimovec', 'source_json': {}, 'source_type': None, 'submitter': 'psimovec', 'tags': [], 'task_id': '6255564-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/ProDy /var/lib/copr-rpmbuild/workspace/workdir-bx2pdgiy/ProDy --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/ProDy', '/var/lib/copr-rpmbuild/workspace/workdir-bx2pdgiy/ProDy', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-bx2pdgiy/ProDy'... Running: git checkout 493f220e687c1ba58e8e9439a90db81bf3fb31b5 -- cmd: ['git', 'checkout', '493f220e687c1ba58e8e9439a90db81bf3fb31b5', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-bx2pdgiy/ProDy rc: 0 stdout: stderr: Note: switching to '493f220e687c1ba58e8e9439a90db81bf3fb31b5'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 493f220 automatic import of ProDy Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-bx2pdgiy/ProDy rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading ProDy-2.4.0.tar.gz INFO: Calling: curl -H Pragma: -o ProDy-2.4.0.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/ProDy/ProDy-2.4.0.tar.gz/md5/cd8edbbd2ebe14a8f62fbb5c685f2e82/ProDy-2.4.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 21.2M 100 21.2M 0 0 70.9M 0 --:--:-- --:--:-- --:--:-- 71.0M INFO: Reading stdout from command: md5sum ProDy-2.4.0.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-bx2pdgiy/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-bx2pdgiy/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1691542957.896581 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-bx2pdgiy/ProDy/ProDy.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1691542957.896581/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 33 MB/s | 19 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 13 MB/s | 69 MB 00:05 fedora 22 MB/s | 73 MB 00:03 Last metadata expiration check: 0:00:04 ago on Wed Aug 9 01:03:08 2023. Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing: dnf-plugins-core noarch 4.4.2-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38 k python3-dnf noarch 4.16.2-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 546 k Installing dependencies: alternatives x86_64 1.25-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k audit-libs x86_64 3.1.2-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 117 k basesystem noarch 11-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 k bash x86_64 5.2.15-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M bzip2-libs x86_64 1.0.8-16.fc39 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coreutils-common-9.3-2.fc39.x86_64.rpm 47 MB/s | 2.1 MB 00:00 (9/137): coreutils-9.3-2.fc39.x86_64.rpm 13 MB/s | 1.1 MB 00:00 (10/137): curl-8.2.1-1.fc39.x86_64.rpm 12 MB/s | 346 kB 00:00 (11/137): dbus-libs-1.14.8-2.fc39.x86_64.rpm 5.4 MB/s | 156 kB 00:00 (12/137): cyrus-sasl-lib-2.1.28-11.fc39.x86_64. 25 MB/s | 793 kB 00:00 (13/137): dnf-data-4.16.2-2.fc39.noarch.rpm 1.7 MB/s | 38 kB 00:00 (14/137): dnf-plugins-core-4.4.2-1.fc39.noarch. 2.0 MB/s | 38 kB 00:00 (15/137): elfutils-default-yama-scope-0.189-4.f 721 kB/s | 13 kB 00:00 (16/137): elfutils-libelf-0.189-4.fc39.x86_64.r 8.3 MB/s | 194 kB 00:00 (17/137): elfutils-libs-0.189-4.fc39.x86_64.rpm 11 MB/s | 258 kB 00:00 (18/137): expat-2.5.0-3.fc39.x86_64.rpm 4.3 MB/s | 110 kB 00:00 (19/137): fedora-gpg-keys-40-0.1.noarch.rpm 5.8 MB/s | 119 kB 00:00 (20/137): fedora-release-40-0.1.noarch.rpm 401 kB/s | 7.5 kB 00:00 (21/137): fedora-release-common-40-0.1.noarch.r 955 kB/s | 18 kB 00:00 (22/137): fedora-release-identity-basic-40-0.1. 454 kB/s | 8.3 kB 00:00 (23/137): fedora-repos-40-0.1.noarch.rpm 502 kB/s | 9.4 kB 00:00 (24/137): fedora-repos-rawhide-40-0.1.noarch.rp 487 kB/s | 9.0 kB 00:00 (25/137): file-libs-5.44-5.fc39.x86_64.rpm 23 MB/s | 729 kB 00:00 (26/137): findutils-4.9.0-5.fc39.x86_64.rpm 10 MB/s | 483 kB 00:00 (27/137): filesystem-3.18-6.fc39.x86_64.rpm 20 MB/s | 1.1 MB 00:00 (28/137): gawk-5.2.2-2.fc39.x86_64.rpm 23 MB/s | 1.1 MB 00:00 (29/137): gdbm-libs-1.23-4.fc39.x86_64.rpm 2.4 MB/s | 56 kB 00:00 (30/137): glib2-2.77.1-1.fc39.x86_64.rpm 35 MB/s | 2.8 MB 00:00 (31/137): glibc-2.38-1.fc39.x86_64.rpm 30 MB/s | 2.2 MB 00:00 (32/137): glibc-minimal-langpack-2.38-1.fc39.x8 3.0 MB/s | 67 kB 00:00 (33/137): glibc-common-2.38-1.fc39.x86_64.rpm 3.8 MB/s | 343 kB 00:00 (34/137): gmp-6.2.1-5.fc39.x86_64.rpm 12 MB/s | 313 kB 00:00 (35/137): gpgme-1.20.0-5.fc39.x86_64.rpm 8.7 MB/s | 210 kB 00:00 (36/137): gnutls-3.8.0-7.fc39.x86_64.rpm 22 MB/s | 1.1 MB 00:00 (37/137): grep-3.11-3.fc39.x86_64.rpm 10 MB/s | 287 kB 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python3-dnf-4.16.2-2.fc39.noarch.rpm 17 MB/s | 546 kB 00:00 (113/137): python3-gpg-1.20.0-5.fc39.x86_64.rpm 10 MB/s | 283 kB 00:00 (114/137): python3-dnf-plugins-core-4.4.2-1.fc3 9.4 MB/s | 278 kB 00:00 (115/137): python3-hawkey-0.70.2-1.fc39.x86_64. 4.7 MB/s | 107 kB 00:00 (116/137): python3-libcomps-0.1.19-3.fc39.x86_6 2.3 MB/s | 48 kB 00:00 (117/137): python3-libdnf-0.70.2-1.fc39.x86_64. 21 MB/s | 823 kB 00:00 (118/137): python3-rpm-4.18.92-1.fc39.x86_64.rp 3.1 MB/s | 68 kB 00:00 (119/137): python3-six-1.16.0-12.fc39.noarch.rp 2.1 MB/s | 41 kB 00:00 (120/137): python3-systemd-235-5.fc39.x86_64.rp 4.1 MB/s | 101 kB 00:00 (121/137): readline-8.2-4.fc39.x86_64.rpm 6.2 MB/s | 213 kB 00:00 (122/137): rpm-4.18.92-1.fc39.x86_64.rpm 16 MB/s | 505 kB 00:00 (123/137): rpm-build-libs-4.18.92-1.fc39.x86_64 3.8 MB/s | 96 kB 00:00 (124/137): rpm-libs-4.18.92-1.fc39.x86_64.rpm 12 MB/s | 312 kB 00:00 (125/137): rpm-sign-libs-4.18.92-1.fc39.x86_64. 1.2 MB/s | 26 kB 00:00 (126/137): sed-4.8-14.fc39.x86_64.rpm 11 MB/s | 297 kB 00:00 (127/137): rpm-sequoia-1.4.1-2.fc39.x86_64.rpm 14 MB/s | 869 kB 00:00 (128/137): setup-2.14.4-1.fc39.noarch.rpm 5.3 MB/s | 148 kB 00:00 (129/137): shadow-utils-4.13-8.fc39.x86_64.rpm 23 MB/s | 1.2 MB 00:00 (130/137): sqlite-libs-3.42.0-7.fc39.x86_64.rpm 11 MB/s | 678 kB 00:00 (131/137): systemd-libs-254-1.fc39.x86_64.rpm 17 MB/s | 685 kB 00:00 (132/137): tzdata-2023c-2.fc39.noarch.rpm 14 MB/s | 433 kB 00:00 (133/137): tpm2-tss-4.0.1-4.fc39.x86_64.rpm 12 MB/s | 672 kB 00:00 (134/137): xz-libs-5.4.4-1.fc39.x86_64.rpm 4.4 MB/s | 108 kB 00:00 (135/137): zchunk-libs-1.3.1-2.fc39.x86_64.rpm 1.6 MB/s | 51 kB 00:00 (136/137): zlib-1.2.13-4.fc39.x86_64.rpm 2.9 MB/s | 94 kB 00:00 (137/137): python3-libs-3.12.0~b4-3.fc39.x86_64 24 MB/s | 8.8 MB 00:00 -------------------------------------------------------------------------------- Total 33 MB/s | 55 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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nettle-3.9.1-2.fc39.x86_64 70/137 Installing : file-libs-5.44-5.fc39.x86_64 71/137 Installing : elfutils-default-yama-scope-0.189-4.fc39.noarch 72/137 Running scriptlet: elfutils-default-yama-scope-0.189-4.fc39.noarch 72/137 Installing : elfutils-libs-0.189-4.fc39.x86_64 73/137 Installing : alternatives-1.25-1.fc39.x86_64 74/137 Installing : p11-kit-trust-0.25.0-2.fc39.x86_64 75/137 Running scriptlet: p11-kit-trust-0.25.0-2.fc39.x86_64 75/137 Installing : gnutls-3.8.0-7.fc39.x86_64 76/137 Installing : glib2-2.77.1-1.fc39.x86_64 77/137 Installing : libbrotli-1.0.9-13.fc39.x86_64 78/137 Installing : libcap-ng-0.8.3-7.fc39.x86_64 79/137 Installing : audit-libs-3.1.2-1.fc39.x86_64 80/137 Installing : libsemanage-3.5-4.fc39.x86_64 81/137 Installing : libeconf-0.4.0-6.fc39.x86_64 82/137 Installing : shadow-utils-2:4.13-8.fc39.x86_64 83/137 Installing : libnghttp2-1.55.1-2.fc39.x86_64 84/137 Installing : libsigsegv-2.14-5.fc39.x86_64 85/137 Installing : gawk-5.2.2-2.fc39.x86_64 86/137 Installing : libverto-0.3.2-6.fc39.x86_64 87/137 Installing : libyaml-0.2.5-12.fc39.x86_64 88/137 Installing : mpdecimal-2.5.1-7.fc39.x86_64 89/137 Installing : npth-1.6-14.fc39.x86_64 90/137 Installing : libssh-config-0.10.5-2.fc39.noarch 91/137 Installing : libreport-filesystem-2.17.11-3.fc39.noarch 92/137 Installing : dnf-data-4.16.2-2.fc39.noarch 93/137 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : coreutils-common-9.3-2.fc39.x86_64 94/137 Installing : openssl-libs-1:3.1.1-1.fc39.x86_64 95/137 Installing : coreutils-9.3-2.fc39.x86_64 96/137 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 97/137 Installing : ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 97/137 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 97/137 Installing : krb5-libs-1.21-3.fc39.x86_64 98/137 Installing : libtirpc-1.3.3-1.rc2.fc39.x86_64 99/137 Installing : zchunk-libs-1.3.1-2.fc39.x86_64 100/137 Installing : libnsl2-2.0.0-6.fc39.x86_64 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Installing : gpgme-1.20.0-5.fc39.x86_64 118/137 Installing : librepo-1.15.2-1.fc39.x86_64 119/137 Installing : python3-gpg-1.20.0-5.fc39.x86_64 120/137 Installing : ima-evm-utils-1.5-2.fc39.x86_64 121/137 Installing : curl-8.2.1-1.fc39.x86_64 122/137 Installing : libfsverity-1.4-10.fc39.x86_64 123/137 Installing : rpm-sequoia-1.4.1-2.fc39.x86_64 124/137 Installing : rpm-libs-4.18.92-1.fc39.x86_64 125/137 Installing : libmodulemd-2.15.0-5.fc39.x86_64 126/137 Installing : libsolv-0.7.24-8.fc39.x86_64 127/137 Installing : libdnf-0.70.2-1.fc39.x86_64 128/137 Installing : python3-libdnf-0.70.2-1.fc39.x86_64 129/137 Installing : python3-hawkey-0.70.2-1.fc39.x86_64 130/137 Installing : rpm-build-libs-4.18.92-1.fc39.x86_64 131/137 Installing : rpm-sign-libs-4.18.92-1.fc39.x86_64 132/137 Installing : python3-rpm-4.18.92-1.fc39.x86_64 133/137 Installing : python3-dnf-4.16.2-2.fc39.noarch 134/137 Installing : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 135/137 Installing : dnf-plugins-core-4.4.2-1.fc39.noarch 136/137 Running scriptlet: rpm-4.18.92-1.fc39.x86_64 137/137 Installing : rpm-4.18.92-1.fc39.x86_64 137/137 Running scriptlet: filesystem-3.18-6.fc39.x86_64 137/137 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 137/137 Running scriptlet: rpm-4.18.92-1.fc39.x86_64 137/137 Verifying : alternatives-1.25-1.fc39.x86_64 1/137 Verifying : audit-libs-3.1.2-1.fc39.x86_64 2/137 Verifying : basesystem-11-18.fc39.noarch 3/137 Verifying : bash-5.2.15-5.fc39.x86_64 4/137 Verifying : bzip2-libs-1.0.8-16.fc39.x86_64 5/137 Verifying : ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 6/137 Verifying : coreutils-9.3-2.fc39.x86_64 7/137 Verifying : coreutils-common-9.3-2.fc39.x86_64 8/137 Verifying : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 9/137 Verifying : curl-8.2.1-1.fc39.x86_64 10/137 Verifying : cyrus-sasl-lib-2.1.28-11.fc39.x86_64 11/137 Verifying : dbus-libs-1:1.14.8-2.fc39.x86_64 12/137 Verifying : dnf-data-4.16.2-2.fc39.noarch 13/137 Verifying : dnf-plugins-core-4.4.2-1.fc39.noarch 14/137 Verifying : elfutils-default-yama-scope-0.189-4.fc39.noarch 15/137 Verifying : elfutils-libelf-0.189-4.fc39.x86_64 16/137 Verifying : elfutils-libs-0.189-4.fc39.x86_64 17/137 Verifying : expat-2.5.0-3.fc39.x86_64 18/137 Verifying : fedora-gpg-keys-40-0.1.noarch 19/137 Verifying : fedora-release-40-0.1.noarch 20/137 Verifying : fedora-release-common-40-0.1.noarch 21/137 Verifying : fedora-release-identity-basic-40-0.1.noarch 22/137 Verifying : fedora-repos-40-0.1.noarch 23/137 Verifying : fedora-repos-rawhide-40-0.1.noarch 24/137 Verifying : file-libs-5.44-5.fc39.x86_64 25/137 Verifying : filesystem-3.18-6.fc39.x86_64 26/137 Verifying : findutils-1:4.9.0-5.fc39.x86_64 27/137 Verifying : gawk-5.2.2-2.fc39.x86_64 28/137 Verifying : gdbm-libs-1:1.23-4.fc39.x86_64 29/137 Verifying : glib2-2.77.1-1.fc39.x86_64 30/137 Verifying : glibc-2.38-1.fc39.x86_64 31/137 Verifying : glibc-common-2.38-1.fc39.x86_64 32/137 Verifying : glibc-minimal-langpack-2.38-1.fc39.x86_64 33/137 Verifying : gmp-1:6.2.1-5.fc39.x86_64 34/137 Verifying : gnupg2-2.4.3-2.fc39.x86_64 35/137 Verifying : gnutls-3.8.0-7.fc39.x86_64 36/137 Verifying : gpgme-1.20.0-5.fc39.x86_64 37/137 Verifying : grep-3.11-3.fc39.x86_64 38/137 Verifying : ima-evm-utils-1.5-2.fc39.x86_64 39/137 Verifying : json-c-0.16-5.fc39.x86_64 40/137 Verifying : keyutils-libs-1.6.1-7.fc39.x86_64 41/137 Verifying : krb5-libs-1.21-3.fc39.x86_64 42/137 Verifying : libacl-2.3.1-8.fc39.x86_64 43/137 Verifying : libarchive-3.7.1-1.fc39.x86_64 44/137 Verifying : libassuan-2.5.6-2.fc39.x86_64 45/137 Verifying : libattr-2.5.1-8.fc39.x86_64 46/137 Verifying : libb2-0.98.1-9.fc39.x86_64 47/137 Verifying : libblkid-2.39.1-3.fc39.x86_64 48/137 Verifying : libbrotli-1.0.9-13.fc39.x86_64 49/137 Verifying : libcap-2.48-7.fc39.x86_64 50/137 Verifying : libcap-ng-0.8.3-7.fc39.x86_64 51/137 Verifying : libcom_err-1.47.0-2.fc39.x86_64 52/137 Verifying : libcomps-0.1.19-3.fc39.x86_64 53/137 Verifying : libcurl-8.2.1-1.fc39.x86_64 54/137 Verifying : libdnf-0.70.2-1.fc39.x86_64 55/137 Verifying : libeconf-0.4.0-6.fc39.x86_64 56/137 Verifying : libevent-2.1.12-9.fc39.x86_64 57/137 Verifying : libffi-3.4.4-4.fc39.x86_64 58/137 Verifying : libfsverity-1.4-10.fc39.x86_64 59/137 Verifying : libgcc-13.2.1-1.fc39.x86_64 60/137 Verifying : libgcrypt-1.10.2-2.fc39.x86_64 61/137 Verifying : libgomp-13.2.1-1.fc39.x86_64 62/137 Verifying : libgpg-error-1.47-2.fc39.x86_64 63/137 Verifying : libidn2-2.3.4-3.fc39.x86_64 64/137 Verifying : libksba-1.6.4-2.fc39.x86_64 65/137 Verifying : libmodulemd-2.15.0-5.fc39.x86_64 66/137 Verifying : libmount-2.39.1-3.fc39.x86_64 67/137 Verifying : libnghttp2-1.55.1-2.fc39.x86_64 68/137 Verifying : libnsl2-2.0.0-6.fc39.x86_64 69/137 Verifying : libpsl-0.21.2-4.fc39.x86_64 70/137 Verifying : librepo-1.15.2-1.fc39.x86_64 71/137 Verifying : libreport-filesystem-2.17.11-3.fc39.noarch 72/137 Verifying : libselinux-3.5-5.fc39.x86_64 73/137 Verifying : libsemanage-3.5-4.fc39.x86_64 74/137 Verifying : libsepol-3.5-2.fc39.x86_64 75/137 Verifying : libsigsegv-2.14-5.fc39.x86_64 76/137 Verifying : libsmartcols-2.39.1-3.fc39.x86_64 77/137 Verifying : libsolv-0.7.24-8.fc39.x86_64 78/137 Verifying : libssh-0.10.5-2.fc39.x86_64 79/137 Verifying : libssh-config-0.10.5-2.fc39.noarch 80/137 Verifying : libstdc++-13.2.1-1.fc39.x86_64 81/137 Verifying : libtasn1-4.19.0-3.fc39.x86_64 82/137 Verifying : libtirpc-1.3.3-1.rc2.fc39.x86_64 83/137 Verifying : libunistring-1.1-4.fc39.x86_64 84/137 Verifying : libuuid-2.39.1-3.fc39.x86_64 85/137 Verifying : libverto-0.3.2-6.fc39.x86_64 86/137 Verifying : libxcrypt-4.4.36-2.fc39.x86_64 87/137 Verifying : libxml2-2.10.4-3.fc39.x86_64 88/137 Verifying : libyaml-0.2.5-12.fc39.x86_64 89/137 Verifying : libzstd-1.5.5-4.fc39.x86_64 90/137 Verifying : lua-libs-5.4.6-3.fc39.x86_64 91/137 Verifying : lz4-libs-1.9.4-4.fc39.x86_64 92/137 Verifying : mpdecimal-2.5.1-7.fc39.x86_64 93/137 Verifying : mpfr-4.2.0-3.fc39.x86_64 94/137 Verifying : ncurses-base-6.4-6.20230520.fc39.noarch 95/137 Verifying : ncurses-libs-6.4-6.20230520.fc39.x86_64 96/137 Verifying : nettle-3.9.1-2.fc39.x86_64 97/137 Verifying : npth-1.6-14.fc39.x86_64 98/137 Verifying : openldap-2.6.6-1.fc39.x86_64 99/137 Verifying : openssl-libs-1:3.1.1-1.fc39.x86_64 100/137 Verifying : p11-kit-0.25.0-2.fc39.x86_64 101/137 Verifying : p11-kit-trust-0.25.0-2.fc39.x86_64 102/137 Verifying : pcre2-10.42-1.fc39.2.x86_64 103/137 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 104/137 Verifying : popt-1.19-3.fc39.x86_64 105/137 Verifying : publicsuffix-list-dafsa-20230614-2.fc39.noarch 106/137 Verifying : python-pip-wheel-23.2.1-1.fc39.noarch 107/137 Verifying : python3-3.12.0~b4-3.fc39.x86_64 108/137 Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 109/137 Verifying : python3-dbus-1.3.2-4.fc39.x86_64 110/137 Verifying : python3-distro-1.8.0-6.fc39.noarch 111/137 Verifying : python3-dnf-4.16.2-2.fc39.noarch 112/137 Verifying : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 113/137 Verifying : python3-gpg-1.20.0-5.fc39.x86_64 114/137 Verifying : python3-hawkey-0.70.2-1.fc39.x86_64 115/137 Verifying : python3-libcomps-0.1.19-3.fc39.x86_64 116/137 Verifying : python3-libdnf-0.70.2-1.fc39.x86_64 117/137 Verifying : python3-libs-3.12.0~b4-3.fc39.x86_64 118/137 Verifying : python3-rpm-4.18.92-1.fc39.x86_64 119/137 Verifying : python3-six-1.16.0-12.fc39.noarch 120/137 Verifying : python3-systemd-235-5.fc39.x86_64 121/137 Verifying : readline-8.2-4.fc39.x86_64 122/137 Verifying : rpm-4.18.92-1.fc39.x86_64 123/137 Verifying : rpm-build-libs-4.18.92-1.fc39.x86_64 124/137 Verifying : rpm-libs-4.18.92-1.fc39.x86_64 125/137 Verifying : rpm-sequoia-1.4.1-2.fc39.x86_64 126/137 Verifying : rpm-sign-libs-4.18.92-1.fc39.x86_64 127/137 Verifying : sed-4.8-14.fc39.x86_64 128/137 Verifying : setup-2.14.4-1.fc39.noarch 129/137 Verifying : shadow-utils-2:4.13-8.fc39.x86_64 130/137 Verifying : sqlite-libs-3.42.0-7.fc39.x86_64 131/137 Verifying : systemd-libs-254-1.fc39.x86_64 132/137 Verifying : tpm2-tss-4.0.1-4.fc39.x86_64 133/137 Verifying : tzdata-2023c-2.fc39.noarch 134/137 Verifying : xz-libs-5.4.4-1.fc39.x86_64 135/137 Verifying : zchunk-libs-1.3.1-2.fc39.x86_64 136/137 Verifying : zlib-1.2.13-4.fc39.x86_64 137/137 Installed products updated. Installed: alternatives-1.25-1.fc39.x86_64 audit-libs-3.1.2-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch coreutils-9.3-2.fc39.x86_64 coreutils-common-9.3-2.fc39.x86_64 crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.2.1-1.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 dbus-libs-1:1.14.8-2.fc39.x86_64 dnf-data-4.16.2-2.fc39.noarch dnf-plugins-core-4.4.2-1.fc39.noarch elfutils-default-yama-scope-0.189-4.fc39.noarch elfutils-libelf-0.189-4.fc39.x86_64 elfutils-libs-0.189-4.fc39.x86_64 expat-2.5.0-3.fc39.x86_64 fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.1.noarch fedora-release-common-40-0.1.noarch fedora-release-identity-basic-40-0.1.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-5.fc39.x86_64 gawk-5.2.2-2.fc39.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 glib2-2.77.1-1.fc39.x86_64 glibc-2.38-1.fc39.x86_64 glibc-common-2.38-1.fc39.x86_64 glibc-minimal-langpack-2.38-1.fc39.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnupg2-2.4.3-2.fc39.x86_64 gnutls-3.8.0-7.fc39.x86_64 gpgme-1.20.0-5.fc39.x86_64 grep-3.11-3.fc39.x86_64 ima-evm-utils-1.5-2.fc39.x86_64 json-c-0.16-5.fc39.x86_64 keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21-3.fc39.x86_64 libacl-2.3.1-8.fc39.x86_64 libarchive-3.7.1-1.fc39.x86_64 libassuan-2.5.6-2.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libb2-0.98.1-9.fc39.x86_64 libblkid-2.39.1-3.fc39.x86_64 libbrotli-1.0.9-13.fc39.x86_64 libcap-2.48-7.fc39.x86_64 libcap-ng-0.8.3-7.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcomps-0.1.19-3.fc39.x86_64 libcurl-8.2.1-1.fc39.x86_64 libdnf-0.70.2-1.fc39.x86_64 libeconf-0.4.0-6.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libfsverity-1.4-10.fc39.x86_64 libgcc-13.2.1-1.fc39.x86_64 libgcrypt-1.10.2-2.fc39.x86_64 libgomp-13.2.1-1.fc39.x86_64 libgpg-error-1.47-2.fc39.x86_64 libidn2-2.3.4-3.fc39.x86_64 libksba-1.6.4-2.fc39.x86_64 libmodulemd-2.15.0-5.fc39.x86_64 libmount-2.39.1-3.fc39.x86_64 libnghttp2-1.55.1-2.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 librepo-1.15.2-1.fc39.x86_64 libreport-filesystem-2.17.11-3.fc39.noarch libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.1-3.fc39.x86_64 libsolv-0.7.24-8.fc39.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-1.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.3-1.rc2.fc39.x86_64 libunistring-1.1-4.fc39.x86_64 libuuid-2.39.1-3.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libyaml-0.2.5-12.fc39.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lz4-libs-1.9.4-4.fc39.x86_64 mpdecimal-2.5.1-7.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-6.20230520.fc39.noarch ncurses-libs-6.4-6.20230520.fc39.x86_64 nettle-3.9.1-2.fc39.x86_64 npth-1.6-14.fc39.x86_64 openldap-2.6.6-1.fc39.x86_64 openssl-libs-1:3.1.1-1.fc39.x86_64 p11-kit-0.25.0-2.fc39.x86_64 p11-kit-trust-0.25.0-2.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230614-2.fc39.noarch python-pip-wheel-23.2.1-1.fc39.noarch python3-3.12.0~b4-3.fc39.x86_64 python3-dateutil-1:2.8.2-10.fc39.noarch python3-dbus-1.3.2-4.fc39.x86_64 python3-distro-1.8.0-6.fc39.noarch python3-dnf-4.16.2-2.fc39.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch python3-gpg-1.20.0-5.fc39.x86_64 python3-hawkey-0.70.2-1.fc39.x86_64 python3-libcomps-0.1.19-3.fc39.x86_64 python3-libdnf-0.70.2-1.fc39.x86_64 python3-libs-3.12.0~b4-3.fc39.x86_64 python3-rpm-4.18.92-1.fc39.x86_64 python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.x86_64 readline-8.2-4.fc39.x86_64 rpm-4.18.92-1.fc39.x86_64 rpm-build-libs-4.18.92-1.fc39.x86_64 rpm-libs-4.18.92-1.fc39.x86_64 rpm-sequoia-1.4.1-2.fc39.x86_64 rpm-sign-libs-4.18.92-1.fc39.x86_64 sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.13-8.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254-1.fc39.x86_64 tpm2-tss-4.0.1-4.fc39.x86_64 tzdata-2023c-2.fc39.noarch xz-libs-5.4.4-1.fc39.x86_64 zchunk-libs-1.3.1-2.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1691542957.896581/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 14 kB/s | 1.5 kB 00:00 Copr repository 53 MB/s | 19 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 38 kB/s | 3.8 kB 00:00 fedora 599 kB/s | 18 kB 00:00 Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing group/module packages: bash x86_64 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0.25.0-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 472 k p11-kit-trust x86_64 0.25.0-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 142 k package-notes-srpm-macros noarch 0.5-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11 k pam x86_64 1.5.3-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 511 k pam-libs x86_64 1.5.3-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 58 k pcre2 x86_64 10.42-1.fc39.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 233 k pcre2-syntax noarch 10.42-1.fc39.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 143 k perl-srpm-macros noarch 1-51.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.0 k pkgconf x86_64 1.9.5-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 42 k pkgconf-m4 noarch 1.9.5-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14 k pkgconf-pkg-config 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 96 k rpm-libs x86_64 4.18.92-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 312 k rpm-sequoia x86_64 1.4.1-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 869 k rpmautospec-rpm-macros noarch 0.3.5-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.8 k rust-srpm-macros noarch 24-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 12 k setup noarch 2.14.4-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 148 k sqlite-libs x86_64 3.42.0-7.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 678 k systemd-libs x86_64 254-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 685 k tzdata noarch 2023c-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 433 k util-linux-core x86_64 2.39.1-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 479 k xxhash-libs x86_64 0.8.2-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k xz-libs x86_64 5.4.4-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 108 k zip x86_64 3.0-38.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 266 k zlib x86_64 1.2.13-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 94 k zstd x86_64 1.5.5-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 482 k Installing Groups: Buildsystem building group Transaction Summary ======================================================================================================================================== Install 153 Packages Total size: 52 M Installed size: 180 M Downloading Packages: [SKIPPED] gdb-minimal-13.2-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] alternatives-1.25-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-11.fc39.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.1.2-1.fc39.x86_64.rpm: Already 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fedora-release-identity-basic-40-0.1.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-40-0.1.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-40-0.1.noarch.rpm: Already downloaded [SKIPPED] file-5.44-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.44-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] filesystem-3.18-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] findutils-4.9.0-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-12.fc39.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-8.fc39.noarch.rpm: Already downloaded [SKIPPED] gawk-5.2.2-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.6.1-2.fc39.noarch.rpm: Already downloaded [SKIPPED] glibc-2.38-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] glibc-common-2.38-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] glibc-gconv-extra-2.38-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] 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libpkgconf-1.9.5-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libpsl-0.21.2-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] libpwquality-1.4.5-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] libselinux-3.5-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] libsemanage-3.5-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] libsepol-3.5-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libsigsegv-2.14-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] libsmartcols-2.39.1-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] libssh-0.10.5-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libssh-config-0.10.5-2.fc39.noarch.rpm: Already downloaded [SKIPPED] libstdc++-13.2.1-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libtasn1-4.19.0-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] libtirpc-1.3.3-1.rc2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libunistring-1.1-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-10.fc39.x86_64.rpm: Already downloaded [SKIPPED] libuuid-2.39.1-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] libverto-0.3.2-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.36-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libxml2-2.10.4-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] libzstd-1.5.5-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] lua-libs-5.4.6-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] lua-srpm-macros-1-9.fc39.noarch.rpm: Already downloaded [SKIPPED] lz4-libs-1.9.4-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] mpfr-4.2.0-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] ncurses-base-6.4-6.20230520.fc39.noarch.rpm: Already downloaded [SKIPPED] ncurses-libs-6.4-6.20230520.fc39.x86_64.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-8-2.fc39.noarch.rpm: Already downloaded [SKIPPED] openblas-srpm-macros-2-14.fc39.noarch.rpm: Already downloaded [SKIPPED] openldap-2.6.6-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] openssl-libs-3.1.1-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] 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downloaded [SKIPPED] sqlite-libs-3.42.0-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] systemd-libs-254-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] tar-1.35-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] tzdata-2023c-2.fc39.noarch.rpm: Already downloaded [SKIPPED] unzip-6.0-62.fc39.x86_64.rpm: Already downloaded [SKIPPED] util-linux-2.39.1-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] util-linux-core-2.39.1-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] which-2.21-40.fc39.x86_64.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.2-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] xz-5.4.4-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] xz-libs-5.4.4-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] zip-3.0-38.fc39.x86_64.rpm: Already downloaded [SKIPPED] zlib-1.2.13-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.5.5-4.fc39.x86_64.rpm: Already downloaded Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-1.fc39.x86_64 1/153 Running scriptlet: libgcc-13.2.1-1.fc39.x86_64 1/153 Installing : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 2/153 Running scriptlet: crypto-policies-20230731-1.git5ed06e0.fc39.noarc 2/153 Installing : tzdata-2023c-2.fc39.noarch 3/153 Installing : fedora-release-identity-basic-40-0.1.noarch 4/153 Installing : fedora-repos-rawhide-40-0.1.noarch 5/153 Installing : fedora-gpg-keys-40-0.1.noarch 6/153 Installing : fedora-repos-40-0.1.noarch 7/153 Installing : fedora-release-common-40-0.1.noarch 8/153 Installing : fedora-release-40-0.1.noarch 9/153 Installing : setup-2.14.4-1.fc39.noarch 10/153 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.4-1.fc39.noarch 10/153 Installing : filesystem-3.18-6.fc39.x86_64 11/153 Installing : basesystem-11-18.fc39.noarch 12/153 Installing : rust-srpm-macros-24-3.fc39.noarch 13/153 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which-2.21-40.fc39.x86_64 152/153 Installing : info-7.0.3-3.fc39.x86_64 153/153 Running scriptlet: filesystem-3.18-6.fc39.x86_64 153/153 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 153/153 Running scriptlet: authselect-libs-1.4.2-3.fc39.x86_64 153/153 Running scriptlet: rpm-4.18.92-1.fc39.x86_64 153/153 Running scriptlet: info-7.0.3-3.fc39.x86_64 153/153 Verifying : gdb-minimal-13.2-7.fc39.x86_64 1/153 Verifying : alternatives-1.25-1.fc39.x86_64 2/153 Verifying : ansible-srpm-macros-1-11.fc39.noarch 3/153 Verifying : audit-libs-3.1.2-1.fc39.x86_64 4/153 Verifying : authselect-1.4.2-3.fc39.x86_64 5/153 Verifying : authselect-libs-1.4.2-3.fc39.x86_64 6/153 Verifying : basesystem-11-18.fc39.noarch 7/153 Verifying : bash-5.2.15-5.fc39.x86_64 8/153 Verifying : binutils-2.40-13.fc39.x86_64 9/153 Verifying : binutils-gold-2.40-13.fc39.x86_64 10/153 Verifying : bzip2-1.0.8-16.fc39.x86_64 11/153 Verifying : bzip2-libs-1.0.8-16.fc39.x86_64 12/153 Verifying : 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fedora-release-40-0.1.noarch 32/153 Verifying : fedora-release-common-40-0.1.noarch 33/153 Verifying : fedora-release-identity-basic-40-0.1.noarch 34/153 Verifying : fedora-repos-40-0.1.noarch 35/153 Verifying : fedora-repos-rawhide-40-0.1.noarch 36/153 Verifying : file-5.44-5.fc39.x86_64 37/153 Verifying : file-libs-5.44-5.fc39.x86_64 38/153 Verifying : filesystem-3.18-6.fc39.x86_64 39/153 Verifying : findutils-1:4.9.0-5.fc39.x86_64 40/153 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 41/153 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 42/153 Verifying : gawk-5.2.2-2.fc39.x86_64 43/153 Verifying : gdbm-libs-1:1.23-4.fc39.x86_64 44/153 Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 45/153 Verifying : glibc-2.38-1.fc39.x86_64 46/153 Verifying : glibc-common-2.38-1.fc39.x86_64 47/153 Verifying : glibc-gconv-extra-2.38-1.fc39.x86_64 48/153 Verifying : glibc-minimal-langpack-2.38-1.fc39.x86_64 49/153 Verifying : gmp-1:6.2.1-5.fc39.x86_64 50/153 Verifying : gnat-srpm-macros-6-3.fc39.noarch 51/153 Verifying : go-srpm-macros-3.2.0-6.fc39.noarch 52/153 Verifying : grep-3.11-3.fc39.x86_64 53/153 Verifying : gzip-1.12-6.fc39.x86_64 54/153 Verifying : info-7.0.3-3.fc39.x86_64 55/153 Verifying : jansson-2.13.1-7.fc39.x86_64 56/153 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 57/153 Verifying : keyutils-libs-1.6.1-7.fc39.x86_64 58/153 Verifying : krb5-libs-1.21-3.fc39.x86_64 59/153 Verifying : libacl-2.3.1-8.fc39.x86_64 60/153 Verifying : libarchive-3.7.1-1.fc39.x86_64 61/153 Verifying : libattr-2.5.1-8.fc39.x86_64 62/153 Verifying : libblkid-2.39.1-3.fc39.x86_64 63/153 Verifying : libbrotli-1.0.9-13.fc39.x86_64 64/153 Verifying : libcap-2.48-7.fc39.x86_64 65/153 Verifying : libcap-ng-0.8.3-7.fc39.x86_64 66/153 Verifying : libcom_err-1.47.0-2.fc39.x86_64 67/153 Verifying : libcurl-8.2.1-1.fc39.x86_64 68/153 Verifying : libdb-5.3.28-56.fc39.x86_64 69/153 Verifying : libeconf-0.4.0-6.fc39.x86_64 70/153 Verifying : libevent-2.1.12-9.fc39.x86_64 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libtirpc-1.3.3-1.rc2.fc39.x86_64 92/153 Verifying : libunistring-1.1-4.fc39.x86_64 93/153 Verifying : libutempter-1.2.1-10.fc39.x86_64 94/153 Verifying : libuuid-2.39.1-3.fc39.x86_64 95/153 Verifying : libverto-0.3.2-6.fc39.x86_64 96/153 Verifying : libxcrypt-4.4.36-2.fc39.x86_64 97/153 Verifying : libxml2-2.10.4-3.fc39.x86_64 98/153 Verifying : libzstd-1.5.5-4.fc39.x86_64 99/153 Verifying : lua-libs-5.4.6-3.fc39.x86_64 100/153 Verifying : lua-srpm-macros-1-9.fc39.noarch 101/153 Verifying : lz4-libs-1.9.4-4.fc39.x86_64 102/153 Verifying : mpfr-4.2.0-3.fc39.x86_64 103/153 Verifying : ncurses-base-6.4-6.20230520.fc39.noarch 104/153 Verifying : ncurses-libs-6.4-6.20230520.fc39.x86_64 105/153 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 106/153 Verifying : openblas-srpm-macros-2-14.fc39.noarch 107/153 Verifying : openldap-2.6.6-1.fc39.x86_64 108/153 Verifying : openssl-libs-1:3.1.1-1.fc39.x86_64 109/153 Verifying : p11-kit-0.25.0-2.fc39.x86_64 110/153 Verifying : p11-kit-trust-0.25.0-2.fc39.x86_64 111/153 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 112/153 Verifying : pam-1.5.3-2.fc39.x86_64 113/153 Verifying : pam-libs-1.5.3-2.fc39.x86_64 114/153 Verifying : patch-2.7.6-22.fc39.x86_64 115/153 Verifying : pcre2-10.42-1.fc39.2.x86_64 116/153 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 117/153 Verifying : perl-srpm-macros-1-51.fc39.noarch 118/153 Verifying : pkgconf-1.9.5-2.fc39.x86_64 119/153 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 120/153 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 121/153 Verifying : popt-1.19-3.fc39.x86_64 122/153 Verifying : publicsuffix-list-dafsa-20230614-2.fc39.noarch 123/153 Verifying : pyproject-srpm-macros-1.9.0-2.fc39.noarch 124/153 Verifying : python-srpm-macros-3.12-2.fc39.noarch 125/153 Verifying : qt5-srpm-macros-5.15.10-2.fc39.noarch 126/153 Verifying : qt6-srpm-macros-6.5.2-2.fc39.noarch 127/153 Verifying : readline-8.2-4.fc39.x86_64 128/153 Verifying : redhat-rpm-config-262-1.fc39.noarch 129/153 Verifying : rpm-4.18.92-1.fc39.x86_64 130/153 Verifying : rpm-build-4.18.92-1.fc39.x86_64 131/153 Verifying : rpm-build-libs-4.18.92-1.fc39.x86_64 132/153 Verifying : rpm-libs-4.18.92-1.fc39.x86_64 133/153 Verifying : rpm-sequoia-1.4.1-2.fc39.x86_64 134/153 Verifying : rpmautospec-rpm-macros-0.3.5-4.fc39.noarch 135/153 Verifying : rust-srpm-macros-24-3.fc39.noarch 136/153 Verifying : sed-4.8-14.fc39.x86_64 137/153 Verifying : setup-2.14.4-1.fc39.noarch 138/153 Verifying : shadow-utils-2:4.13-8.fc39.x86_64 139/153 Verifying : sqlite-libs-3.42.0-7.fc39.x86_64 140/153 Verifying : systemd-libs-254-1.fc39.x86_64 141/153 Verifying : tar-2:1.35-1.fc39.x86_64 142/153 Verifying : tzdata-2023c-2.fc39.noarch 143/153 Verifying : unzip-6.0-62.fc39.x86_64 144/153 Verifying : util-linux-2.39.1-3.fc39.x86_64 145/153 Verifying : util-linux-core-2.39.1-3.fc39.x86_64 146/153 Verifying : which-2.21-40.fc39.x86_64 147/153 Verifying : xxhash-libs-0.8.2-1.fc39.x86_64 148/153 Verifying : xz-5.4.4-1.fc39.x86_64 149/153 Verifying : xz-libs-5.4.4-1.fc39.x86_64 150/153 Verifying : zip-3.0-38.fc39.x86_64 151/153 Verifying : zlib-1.2.13-4.fc39.x86_64 152/153 Verifying : zstd-1.5.5-4.fc39.x86_64 153/153 Installed: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-1.fc39.x86_64 authselect-1.4.2-3.fc39.x86_64 authselect-libs-1.4.2-3.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.x86_64 binutils-2.40-13.fc39.x86_64 binutils-gold-2.40-13.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch coreutils-9.3-2.fc39.x86_64 coreutils-common-9.3-2.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.2.1-1.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-10.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-4.fc39.x86_64 elfutils-debuginfod-client-0.189-4.fc39.x86_64 elfutils-default-yama-scope-0.189-4.fc39.noarch elfutils-libelf-0.189-4.fc39.x86_64 elfutils-libs-0.189-4.fc39.x86_64 fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.1.noarch fedora-release-common-40-0.1.noarch fedora-release-identity-basic-40-0.1.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-5.fc39.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-13.2-7.fc39.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-1.fc39.x86_64 glibc-common-2.38-1.fc39.x86_64 glibc-gconv-extra-2.38-1.fc39.x86_64 glibc-minimal-langpack-2.38-1.fc39.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-6.fc39.noarch grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21-3.fc39.x86_64 libacl-2.3.1-8.fc39.x86_64 libarchive-3.7.1-1.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.1-3.fc39.x86_64 libbrotli-1.0.9-13.fc39.x86_64 libcap-2.48-7.fc39.x86_64 libcap-ng-0.8.3-7.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-1.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.4.0-6.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.1-3.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-1.fc39.x86_64 libgomp-13.2.1-1.fc39.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.1-3.fc39.x86_64 libnghttp2-1.55.1-2.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.1-3.fc39.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-1.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.3-1.rc2.fc39.x86_64 libunistring-1.1-4.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.1-3.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-6.20230520.fc39.noarch ncurses-libs-6.4-6.20230520.fc39.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-1:3.1.1-1.fc39.x86_64 p11-kit-0.25.0-2.fc39.x86_64 p11-kit-trust-0.25.0-2.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.x86_64 pam-libs-1.5.3-2.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230614-2.fc39.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-2.fc39.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-2.fc39.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-262-1.fc39.noarch rpm-4.18.92-1.fc39.x86_64 rpm-build-4.18.92-1.fc39.x86_64 rpm-build-libs-4.18.92-1.fc39.x86_64 rpm-libs-4.18.92-1.fc39.x86_64 rpm-sequoia-1.4.1-2.fc39.x86_64 rpmautospec-rpm-macros-0.3.5-4.fc39.noarch rust-srpm-macros-24-3.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.13-8.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254-1.fc39.x86_64 tar-2:1.35-1.fc39.x86_64 tzdata-2023c-2.fc39.noarch unzip-6.0-62.fc39.x86_64 util-linux-2.39.1-3.fc39.x86_64 util-linux-core-2.39.1-3.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-38.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.5-4.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: elfutils-debuginfod-client-0.189-4.fc39.x86_64 fedora-release-40-0.1.noarch libpsl-0.21.2-4.fc39.x86_64 info-7.0.3-3.fc39.x86_64 crypto-policies-20230731-1.git5ed06e0.fc39.noarch ansible-srpm-macros-1-11.fc39.noarch libbrotli-1.0.9-13.fc39.x86_64 elfutils-libs-0.189-4.fc39.x86_64 redhat-rpm-config-262-1.fc39.noarch libattr-2.5.1-8.fc39.x86_64 libacl-2.3.1-8.fc39.x86_64 python-srpm-macros-3.12-2.fc39.noarch package-notes-srpm-macros-0.5-9.fc39.noarch sqlite-libs-3.42.0-7.fc39.x86_64 curl-8.2.1-1.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch systemd-libs-254-1.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 coreutils-common-9.3-2.fc39.x86_64 fedora-repos-40-0.1.noarch findutils-4.9.0-5.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 popt-1.19-3.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 zstd-1.5.5-4.fc39.x86_64 util-linux-2.39.1-3.fc39.x86_64 rpm-build-4.18.92-1.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 glibc-gconv-extra-2.38-1.fc39.x86_64 openssl-libs-3.1.1-1.fc39.x86_64 gawk-5.2.2-2.fc39.x86_64 libmount-2.39.1-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 cpio-2.14-4.fc39.x86_64 pyproject-srpm-macros-1.9.0-2.fc39.noarch ncurses-libs-6.4-6.20230520.fc39.x86_64 file-5.44-5.fc39.x86_64 fedora-release-identity-basic-40-0.1.noarch libstdc++-13.2.1-1.fc39.x86_64 libssh-0.10.5-2.fc39.x86_64 libfdisk-2.39.1-3.fc39.x86_64 pkgconf-pkg-config-1.9.5-2.fc39.x86_64 bash-5.2.15-5.fc39.x86_64 krb5-libs-1.21-3.fc39.x86_64 fedora-gpg-keys-40-0.1.noarch libselinux-3.5-5.fc39.x86_64 perl-srpm-macros-1-51.fc39.noarch binutils-gold-2.40-13.fc39.x86_64 p11-kit-trust-0.25.0-2.fc39.x86_64 openblas-srpm-macros-2-14.fc39.noarch libuuid-2.39.1-3.fc39.x86_64 fedora-release-common-40-0.1.noarch elfutils-0.189-4.fc39.x86_64 libzstd-1.5.5-4.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 tar-1.35-1.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 elfutils-libelf-0.189-4.fc39.x86_64 gzip-1.12-6.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch libcap-2.48-7.fc39.x86_64 libcap-ng-0.8.3-7.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 rust-srpm-macros-24-3.fc39.noarch p11-kit-0.25.0-2.fc39.x86_64 rpm-4.18.92-1.fc39.x86_64 glibc-common-2.38-1.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch alternatives-1.25-1.fc39.x86_64 grep-3.11-3.fc39.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch efi-srpm-macros-5-9.fc39.noarch libblkid-2.39.1-3.fc39.x86_64 libidn2-2.3.4-3.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch libunistring-1.1-4.fc39.x86_64 pam-libs-1.5.3-2.fc39.x86_64 rpm-build-libs-4.18.92-1.fc39.x86_64 debugedit-5.0-10.fc39.x86_64 which-2.21-40.fc39.x86_64 zip-3.0-38.fc39.x86_64 shadow-utils-4.13-8.fc39.x86_64 gmp-6.2.1-5.fc39.x86_64 publicsuffix-list-dafsa-20230614-2.fc39.noarch authselect-1.4.2-3.fc39.x86_64 basesystem-11-18.fc39.noarch ncurses-base-6.4-6.20230520.fc39.noarch ocaml-srpm-macros-8-2.fc39.noarch gdb-minimal-13.2-7.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 readline-8.2-4.fc39.x86_64 libarchive-3.7.1-1.fc39.x86_64 libtirpc-1.3.3-1.rc2.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 tzdata-2023c-2.fc39.noarch patch-2.7.6-22.fc39.x86_64 gdbm-libs-1.23-4.fc39.x86_64 openldap-2.6.6-1.fc39.x86_64 libsmartcols-2.39.1-3.fc39.x86_64 sed-4.8-14.fc39.x86_64 qt6-srpm-macros-6.5.2-2.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch rpm-libs-4.18.92-1.fc39.x86_64 audit-libs-3.1.2-1.fc39.x86_64 dwz-0.15-3.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 unzip-6.0-62.fc39.x86_64 glibc-minimal-langpack-2.38-1.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 keyutils-libs-1.6.1-7.fc39.x86_64 qt5-srpm-macros-5.15.10-2.fc39.noarch util-linux-core-2.39.1-3.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 coreutils-9.3-2.fc39.x86_64 libnghttp2-1.55.1-2.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 authselect-libs-1.4.2-3.fc39.x86_64 setup-2.14.4-1.fc39.noarch fedora-repos-rawhide-40-0.1.noarch libxml2-2.10.4-3.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libgomp-13.2.1-1.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 elfutils-default-yama-scope-0.189-4.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 libeconf-0.4.0-6.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libcurl-8.2.1-1.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch binutils-2.40-13.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 rpm-sequoia-1.4.1-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 go-srpm-macros-3.2.0-6.fc39.noarch libssh-config-0.10.5-2.fc39.noarch rpmautospec-rpm-macros-0.3.5-4.fc39.noarch glibc-2.38-1.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pam-1.5.3-2.fc39.x86_64 libgcc-13.2.1-1.fc39.x86_64 ed-1.19-4.fc39.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch zlib-1.2.13-4.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689724800 Wrote: /builddir/build/SRPMS/ProDy-2.4.0-4.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1691542957.896581/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1691542957.896581/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1691542957.896581/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-bx2pdgiy/ProDy/ProDy.spec) Config(child) 1 minutes 22 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/ProDy-2.4.0-4.fc40.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1691542957.896581 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/ProDy-2.4.0-4.fc40.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1691542957.896581/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1691542957.896581/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1691542957.896581/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (direct choice) Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 40 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 67 kB/s | 3.8 kB 00:00 fedora 562 kB/s | 18 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for ProDy-2.4.0-4.fc40.src.rpm Start: build setup for ProDy-2.4.0-4.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689724800 Wrote: /builddir/build/SRPMS/ProDy-2.4.0-4.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 45 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 44 kB/s | 3.8 kB 00:00 fedora 560 kB/s | 18 kB 00:00 Dependencies resolved. =============================================================================================================================================== Package Arch Version Repository Size =============================================================================================================================================== Installing: gcc x86_64 13.2.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 34 M gcc-c++ x86_64 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 856 k urw-base35-nimbus-sans-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 M urw-base35-p052-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 974 k urw-base35-standard-symbols-ps-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 42 k urw-base35-z003-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 276 k wise2 x86_64 2.4.1-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 974 k xml-common noarch 0.6.3-61.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 31 k xorg-x11-fonts-ISO8859-1-100dpi noarch 7.5-36.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 M Transaction Summary =============================================================================================================================================== Install 183 Packages Total size: 199 M Total download size: 49 M Installed size: 768 M Downloading Packages: [SKIPPED] flexiblas-3.3.1-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-netlib-3.3.1-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] graphite2-1.3.14-12.fc39.x86_64.rpm: Already downloaded [SKIPPED] graphviz-8.1.0-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] libjxl-0.8.2-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] openblas-0.3.23-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] openblas-openmp-0.3.23-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] poppler-23.08.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] poppler-glib-23.08.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] python3-numpy-1.24.4-2.fc39.x86_64.rpm: Already downloaded 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google-droid-sans-fonts-20200215-15.fc39.noarch.rpm: Already downloaded [SKIPPED] google-noto-fonts-common-20230801-1.fc39.noarch.rpm: Already downloaded [SKIPPED] google-noto-sans-vf-fonts-20230801-1.fc39.noarch.rpm: Already downloaded [SKIPPED] gts-0.7.6-46.20121130.fc39.x86_64.rpm: Already downloaded [SKIPPED] guile22-2.2.7-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] harfbuzz-8.1.1-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] highway-1.0.5-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] jbig2dec-libs-0.19-10.fc39.x86_64.rpm: Already downloaded [SKIPPED] jbigkit-libs-2.1-26.fc39.x86_64.rpm: Already downloaded [SKIPPED] kernel-headers-6.5.0-0.rc2.git0.1.fc39.x86_64.rpm: Already downloaded [SKIPPED] lasi-1.1.3-11.fc39.x86_64.rpm: Already downloaded [SKIPPED] lcms2-2.15-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libICE-1.0.10-11.fc39.x86_64.rpm: Already downloaded [SKIPPED] libSM-1.2.3-13.fc39.x86_64.rpm: Already downloaded [SKIPPED] libX11-1.8.6-2.fc39.x86_64.rpm: Already 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pixman-0.42.2-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] poppler-data-0.4.11-5.fc39.noarch.rpm: Already downloaded [SKIPPED] pyproject-rpm-macros-1.9.0-2.fc39.noarch.rpm: Already downloaded [SKIPPED] python-pip-wheel-23.2.1-1.fc39.noarch.rpm: Already downloaded [SKIPPED] python-rpm-macros-3.12-2.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-3.12.0~b4-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] python3-devel-3.12.0~b4-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] python3-libs-3.12.0~b4-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] python3-packaging-23.1-4.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-pyparsing-3.0.9-11.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-rpm-generators-14-7.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-rpm-macros-3.12-2.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-setuptools-67.7.2-5.fc39.noarch.rpm: Already downloaded [SKIPPED] rav1e-libs-0.6.6-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] rsvg-pixbuf-loader-2.56.90-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] shared-mime-info-2.2-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] svt-av1-libs-1.4.1-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] urw-base35-bookman-fonts-20200910-18.fc39.noarch.rpm: Already downloaded [SKIPPED] urw-base35-c059-fonts-20200910-18.fc39.noarch.rpm: Already downloaded [SKIPPED] urw-base35-d050000l-fonts-20200910-18.fc39.noarch.rpm: Already downloaded [SKIPPED] urw-base35-fonts-20200910-18.fc39.noarch.rpm: Already downloaded [SKIPPED] urw-base35-fonts-common-20200910-18.fc39.noarch.rpm: Already downloaded [SKIPPED] urw-base35-gothic-fonts-20200910-18.fc39.noarch.rpm: Already downloaded [SKIPPED] urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39.noarch.rpm: Already downloaded [SKIPPED] urw-base35-nimbus-roman-fonts-20200910-18.fc39.noarch.rpm: Already downloaded [SKIPPED] urw-base35-nimbus-sans-fonts-20200910-18.fc39.noarch.rpm: Already downloaded [SKIPPED] urw-base35-p052-fonts-20200910-18.fc39.noarch.rpm: Already downloaded [SKIPPED] urw-base35-standard-symbols-ps-fonts-20200910-18.fc39.noarch.rpm: Already downloaded [SKIPPED] urw-base35-z003-fonts-20200910-18.fc39.noarch.rpm: Already downloaded [SKIPPED] xml-common-0.6.3-61.fc39.noarch.rpm: Already downloaded [SKIPPED] xorg-x11-fonts-ISO8859-1-100dpi-7.5-36.fc39.noarch.rpm: Already downloaded (133/183): python3-contourpy-1.1.0-2.fc39.x86_6 3.5 MB/s | 235 kB 00:00 (134/183): python3-fonttools-4.42.0-1.fc39.x86_ 21 MB/s | 2.7 MB 00:00 (135/183): python3-biopython-1.81-4.fc39.x86_64 22 MB/s | 3.3 MB 00:00 (136/183): python3-matplotlib-3.7.2-2.fc39.x86_ 36 MB/s | 4.1 MB 00:00 (137/183): python3-matplotlib-data-3.7.2-2.fc39 11 MB/s | 526 kB 00:00 (138/183): python3-matplotlib-tk-3.7.2-2.fc39.x 2.4 MB/s | 52 kB 00:00 (139/183): python3-numpy-f2py-1.24.4-2.fc39.x86 21 MB/s | 441 kB 00:00 (140/183): python3-matplotlib-data-fonts-3.7.2- 41 MB/s | 2.3 MB 00:00 (141/183): 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python3-scipy-1.11.1-1.fc39.x86_64.r 32 MB/s | 16 MB 00:00 -------------------------------------------------------------------------------- Total 36 MB/s | 49 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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freetype-2.13.1-2.fc39.x86_64 42/183 Verifying : fribidi-1.0.13-2.fc39.x86_64 43/183 Verifying : gc-8.2.2-4.fc39.x86_64 44/183 Verifying : gcc-13.2.1-1.fc39.x86_64 45/183 Verifying : gcc-c++-13.2.1-1.fc39.x86_64 46/183 Verifying : gcc-plugin-annobin-13.2.1-1.fc39.x86_64 47/183 Verifying : gd-2.3.3-12.fc39.x86_64 48/183 Verifying : gdk-pixbuf2-2.42.10-5.fc39.x86_64 49/183 Verifying : glib2-2.77.1-1.fc39.x86_64 50/183 Verifying : glibc-devel-2.38-1.fc39.x86_64 51/183 Verifying : glibc-headers-x86-2.38-1.fc39.noarch 52/183 Verifying : gnutls-3.8.0-7.fc39.x86_64 53/183 Verifying : google-droid-sans-fonts-20200215-15.fc39.noarch 54/183 Verifying : google-noto-fonts-common-20230801-1.fc39.noarch 55/183 Verifying : google-noto-sans-vf-fonts-20230801-1.fc39.noarch 56/183 Verifying : gts-0.7.6-46.20121130.fc39.x86_64 57/183 Verifying : guile22-2.2.7-9.fc39.x86_64 58/183 Verifying : harfbuzz-8.1.1-1.fc39.x86_64 59/183 Verifying : highway-1.0.5-1.fc39.x86_64 60/183 Verifying : jbig2dec-libs-0.19-10.fc39.x86_64 61/183 Verifying : jbigkit-libs-2.1-26.fc39.x86_64 62/183 Verifying : kernel-headers-6.5.0-0.rc2.git0.1.fc39.x86_64 63/183 Verifying : lasi-1.1.3-11.fc39.x86_64 64/183 Verifying : lcms2-2.15-2.fc39.x86_64 65/183 Verifying : libICE-1.0.10-11.fc39.x86_64 66/183 Verifying : libSM-1.2.3-13.fc39.x86_64 67/183 Verifying : libX11-1.8.6-2.fc39.x86_64 68/183 Verifying : libX11-common-1.8.6-2.fc39.noarch 69/183 Verifying : libXau-1.0.11-3.fc39.x86_64 70/183 Verifying : libXext-1.3.5-3.fc39.x86_64 71/183 Verifying : libXft-2.3.8-3.fc39.x86_64 72/183 Verifying : libXpm-3.5.15-4.fc39.x86_64 73/183 Verifying : libXrender-0.9.11-3.fc39.x86_64 74/183 Verifying : libXt-1.2.1-5.fc39.x86_64 75/183 Verifying : libaom-3.6.1-2.fc39.x86_64 76/183 Verifying : libavif-0.11.1-11.fc39.x86_64 77/183 Verifying : libb2-0.98.1-9.fc39.x86_64 78/183 Verifying : libdatrie-0.2.13-7.fc39.x86_64 79/183 Verifying : libdav1d-1.2.1-2.fc39.x86_64 80/183 Verifying : libfontenc-1.1.6-3.fc39.x86_64 81/183 Verifying : libgfortran-13.2.1-1.fc39.x86_64 82/183 Verifying : libgs-10.01.2-3.fc39.x86_64 83/183 Verifying : libijs-0.35-19.fc39.x86_64 84/183 Verifying : libimagequant-4.0.1-5.fc39.x86_64 85/183 Verifying : libjpeg-turbo-2.1.4-3.fc39.x86_64 86/183 Verifying : libmpc-1.3.1-3.fc39.x86_64 87/183 Verifying : libpaper-1:2.1.1-1.fc39.x86_64 88/183 Verifying : libpng-2:1.6.37-15.fc39.x86_64 89/183 Verifying : libpq-15.3-1.fc39.x86_64 90/183 Verifying : libqhull_r-1:7.2.1-13.fc39.x86_64 91/183 Verifying : libquadmath-13.2.1-1.fc39.x86_64 92/183 Verifying : libraqm-0.8.0-5.fc39.x86_64 93/183 Verifying : librsvg2-2.56.90-9.fc39.x86_64 94/183 Verifying : libstdc++-devel-13.2.1-1.fc39.x86_64 95/183 Verifying : libthai-0.1.29-6.fc39.x86_64 96/183 Verifying : libtiff-4.4.0-7.fc39.x86_64 97/183 Verifying : libtool-ltdl-2.4.7-7.fc39.x86_64 98/183 Verifying : libvmaf-2.3.0-6.fc39.x86_64 99/183 Verifying : libwebp-1.3.1-2.fc39.x86_64 100/183 Verifying : libxcb-1.13.1-12.fc39.x86_64 101/183 Verifying : libxcrypt-devel-4.4.36-2.fc39.x86_64 102/183 Verifying : libxslt-1.1.38-3.fc39.x86_64 103/183 Verifying : m4-1.4.19-6.fc39.x86_64 104/183 Verifying : make-1:4.4.1-2.fc39.x86_64 105/183 Verifying : mariadb-connector-c-3.3.5-2.fc39.x86_64 106/183 Verifying : mariadb-connector-c-config-3.3.5-2.fc39.noarch 107/183 Verifying : mkfontscale-1.2.2-4.fc39.x86_64 108/183 Verifying : mpdecimal-2.5.1-7.fc39.x86_64 109/183 Verifying : mysql-connector-python3-8.0.21-10.fc39.noarch 110/183 Verifying : netpbm-11.02.00-2.fc39.x86_64 111/183 Verifying : nettle-3.9.1-2.fc39.x86_64 112/183 Verifying : nspr-4.35.0-11.fc39.x86_64 113/183 Verifying : nss-3.92.0-1.fc39.x86_64 114/183 Verifying : nss-softokn-3.92.0-1.fc39.x86_64 115/183 Verifying : nss-softokn-freebl-3.92.0-1.fc39.x86_64 116/183 Verifying : nss-sysinit-3.92.0-1.fc39.x86_64 117/183 Verifying : nss-util-3.92.0-1.fc39.x86_64 118/183 Verifying : openjpeg2-2.5.0-4.fc39.x86_64 119/183 Verifying : pango-1.50.14-2.fc39.x86_64 120/183 Verifying : pixman-0.42.2-2.fc39.x86_64 121/183 Verifying : poppler-data-0.4.11-5.fc39.noarch 122/183 Verifying : protobuf-3.19.6-6.fc39.x86_64 123/183 Verifying : pyproject-rpm-macros-1.9.0-2.fc39.noarch 124/183 Verifying : python-pip-wheel-23.2.1-1.fc39.noarch 125/183 Verifying : python-rpm-macros-3.12-2.fc39.noarch 126/183 Verifying : python3-3.12.0~b4-3.fc39.x86_64 127/183 Verifying : python3-appdirs-1.4.4-11.fc39.noarch 128/183 Verifying : python3-brotli-1.0.9-13.fc39.x86_64 129/183 Verifying : python3-cairo-1.24.0-2.fc39.x86_64 130/183 Verifying : python3-charset-normalizer-3.2.0-2.fc39.noarch 131/183 Verifying : python3-cycler-0.11.0-9.fc39.noarch 132/183 Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 133/183 Verifying : python3-devel-3.12.0~b4-3.fc39.x86_64 134/183 Verifying : python3-fs-2.4.16-5.fc39.noarch 135/183 Verifying : python3-idna-3.4-4.fc39.noarch 136/183 Verifying : python3-isodate-0.6.1-9.fc39.noarch 137/183 Verifying : python3-kiwisolver-1.4.4-9.fc39.x86_64 138/183 Verifying : python3-libs-3.12.0~b4-3.fc39.x86_64 139/183 Verifying : python3-lxml-4.9.3-2.fc39.x86_64 140/183 Verifying : python3-munkres-1.1.2-16.fc39.noarch 141/183 Verifying : python3-mysqlclient-2.1.1-5.fc39.x86_64 142/183 Verifying : python3-networkx-3.1-4.fc39~bootstrap.noarch 143/183 Verifying : python3-nose-1.3.7-42.fc39.noarch 144/183 Verifying : python3-olefile-0.46-21.fc39.noarch 145/183 Verifying : python3-packaging-23.1-4.fc39.noarch 146/183 Verifying : python3-pooch-1.5.2-12.fc39.noarch 147/183 Verifying : python3-protobuf-3.19.6-6.fc39.x86_64 148/183 Verifying : python3-psycopg2-2.9.6-3.fc39.x86_64 149/183 Verifying : python3-pyparsing-3.0.9-11.fc39.noarch 150/183 Verifying : python3-pysocks-1.7.1-20.fc39.noarch 151/183 Verifying : python3-rdflib-6.2.0-4.fc39.noarch 152/183 Verifying : python3-reportlab-4.0.4-3.fc39.noarch 153/183 Verifying : python3-requests-2.28.2-5.fc39.noarch 154/183 Verifying : python3-rpm-generators-14-7.fc39.noarch 155/183 Verifying : python3-rpm-macros-3.12-2.fc39.noarch 156/183 Verifying : python3-scipy-1.11.1-1.fc39.x86_64 157/183 Verifying : python3-setuptools-67.7.2-5.fc39.noarch 158/183 Verifying : python3-six-1.16.0-12.fc39.noarch 159/183 Verifying : python3-tkinter-3.12.0~b4-3.fc39.x86_64 160/183 Verifying : python3-urllib3+socks-1.26.16-2.fc39.noarch 161/183 Verifying : python3-urllib3-1.26.16-2.fc39.noarch 162/183 Verifying : rav1e-libs-0.6.6-2.fc39.x86_64 163/183 Verifying : rsvg-pixbuf-loader-2.56.90-9.fc39.x86_64 164/183 Verifying : shared-mime-info-2.2-4.fc39.x86_64 165/183 Verifying : svt-av1-libs-1.4.1-3.fc39.x86_64 166/183 Verifying : tcl-1:8.6.12-5.fc39.x86_64 167/183 Verifying : tk-1:8.6.12-5.fc39.x86_64 168/183 Verifying : urw-base35-bookman-fonts-20200910-18.fc39.noarch 169/183 Verifying : urw-base35-c059-fonts-20200910-18.fc39.noarch 170/183 Verifying : urw-base35-d050000l-fonts-20200910-18.fc39.noarc 171/183 Verifying : urw-base35-fonts-20200910-18.fc39.noarch 172/183 Verifying : urw-base35-fonts-common-20200910-18.fc39.noarch 173/183 Verifying : urw-base35-gothic-fonts-20200910-18.fc39.noarch 174/183 Verifying : urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39 175/183 Verifying : urw-base35-nimbus-roman-fonts-20200910-18.fc39.n 176/183 Verifying : urw-base35-nimbus-sans-fonts-20200910-18.fc39.no 177/183 Verifying : urw-base35-p052-fonts-20200910-18.fc39.noarch 178/183 Verifying : urw-base35-standard-symbols-ps-fonts-20200910-18 179/183 Verifying : urw-base35-z003-fonts-20200910-18.fc39.noarch 180/183 Verifying : wise2-2.4.1-18.fc39.x86_64 181/183 Verifying : xml-common-0.6.3-61.fc39.noarch 182/183 Verifying : xorg-x11-fonts-ISO8859-1-100dpi-7.5-36.fc39.noar 183/183 Installed: abattis-cantarell-vf-fonts-0.301-10.fc39.noarch adobe-mappings-cmap-20230622-1.fc39.noarch adobe-mappings-cmap-deprecated-20230622-1.fc39.noarch adobe-mappings-pdf-20190401-5.fc39.noarch annobin-docs-12.23-1.fc39.noarch annobin-plugin-gcc-12.23-1.fc39.x86_64 avahi-libs-0.8-24.fc39.x86_64 cairo-1.17.8-5.fc39.x86_64 cairo-gobject-1.17.8-5.fc39.x86_64 cpp-13.2.1-1.fc39.x86_64 crypto-policies-scripts-20230731-1.git5ed06e0.fc39.noarch cups-libs-1:2.4.6-2.fc39.x86_64 dbus-libs-1:1.14.8-2.fc39.x86_64 default-fonts-core-sans-4.0-6.fc39.noarch dejavu-sans-fonts-2.37-20.fc38.noarch expat-2.5.0-3.fc39.x86_64 flex-2.6.4-13.fc39.x86_64 flexiblas-3.3.1-5.fc39.x86_64 flexiblas-netlib-3.3.1-5.fc39.x86_64 flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64 fontconfig-2.14.2-4.fc39.x86_64 fonts-filesystem-1:2.0.5-12.fc39.noarch freetype-2.13.1-2.fc39.x86_64 fribidi-1.0.13-2.fc39.x86_64 gc-8.2.2-4.fc39.x86_64 gcc-13.2.1-1.fc39.x86_64 gcc-c++-13.2.1-1.fc39.x86_64 gcc-plugin-annobin-13.2.1-1.fc39.x86_64 gd-2.3.3-12.fc39.x86_64 gdk-pixbuf2-2.42.10-5.fc39.x86_64 glib2-2.77.1-1.fc39.x86_64 glibc-devel-2.38-1.fc39.x86_64 glibc-headers-x86-2.38-1.fc39.noarch gnutls-3.8.0-7.fc39.x86_64 google-droid-sans-fonts-20200215-15.fc39.noarch google-noto-fonts-common-20230801-1.fc39.noarch google-noto-sans-vf-fonts-20230801-1.fc39.noarch graphite2-1.3.14-12.fc39.x86_64 graphviz-8.1.0-5.fc39.x86_64 gts-0.7.6-46.20121130.fc39.x86_64 guile22-2.2.7-9.fc39.x86_64 harfbuzz-8.1.1-1.fc39.x86_64 highway-1.0.5-1.fc39.x86_64 jbig2dec-libs-0.19-10.fc39.x86_64 jbigkit-libs-2.1-26.fc39.x86_64 kernel-headers-6.5.0-0.rc2.git0.1.fc39.x86_64 lasi-1.1.3-11.fc39.x86_64 lcms2-2.15-2.fc39.x86_64 libICE-1.0.10-11.fc39.x86_64 libSM-1.2.3-13.fc39.x86_64 libX11-1.8.6-2.fc39.x86_64 libX11-common-1.8.6-2.fc39.noarch libXau-1.0.11-3.fc39.x86_64 libXext-1.3.5-3.fc39.x86_64 libXft-2.3.8-3.fc39.x86_64 libXpm-3.5.15-4.fc39.x86_64 libXrender-0.9.11-3.fc39.x86_64 libXt-1.2.1-5.fc39.x86_64 libaom-3.6.1-2.fc39.x86_64 libavif-0.11.1-11.fc39.x86_64 libb2-0.98.1-9.fc39.x86_64 libdatrie-0.2.13-7.fc39.x86_64 libdav1d-1.2.1-2.fc39.x86_64 libfontenc-1.1.6-3.fc39.x86_64 libgfortran-13.2.1-1.fc39.x86_64 libgs-10.01.2-3.fc39.x86_64 libijs-0.35-19.fc39.x86_64 libimagequant-4.0.1-5.fc39.x86_64 libjpeg-turbo-2.1.4-3.fc39.x86_64 libjxl-1:0.8.2-2.fc39.x86_64 libmpc-1.3.1-3.fc39.x86_64 libpaper-1:2.1.1-1.fc39.x86_64 libpng-2:1.6.37-15.fc39.x86_64 libpq-15.3-1.fc39.x86_64 libqhull_r-1:7.2.1-13.fc39.x86_64 libquadmath-13.2.1-1.fc39.x86_64 libraqm-0.8.0-5.fc39.x86_64 librsvg2-2.56.90-9.fc39.x86_64 libstdc++-devel-13.2.1-1.fc39.x86_64 libthai-0.1.29-6.fc39.x86_64 libtiff-4.4.0-7.fc39.x86_64 libtool-ltdl-2.4.7-7.fc39.x86_64 libvmaf-2.3.0-6.fc39.x86_64 libwebp-1.3.1-2.fc39.x86_64 libxcb-1.13.1-12.fc39.x86_64 libxcrypt-devel-4.4.36-2.fc39.x86_64 libxslt-1.1.38-3.fc39.x86_64 m4-1.4.19-6.fc39.x86_64 make-1:4.4.1-2.fc39.x86_64 mariadb-connector-c-3.3.5-2.fc39.x86_64 mariadb-connector-c-config-3.3.5-2.fc39.noarch mkfontscale-1.2.2-4.fc39.x86_64 mpdecimal-2.5.1-7.fc39.x86_64 mysql-connector-python3-8.0.21-10.fc39.noarch netpbm-11.02.00-2.fc39.x86_64 nettle-3.9.1-2.fc39.x86_64 nspr-4.35.0-11.fc39.x86_64 nss-3.92.0-1.fc39.x86_64 nss-softokn-3.92.0-1.fc39.x86_64 nss-softokn-freebl-3.92.0-1.fc39.x86_64 nss-sysinit-3.92.0-1.fc39.x86_64 nss-util-3.92.0-1.fc39.x86_64 openblas-0.3.23-1.fc39.x86_64 openblas-openmp-0.3.23-1.fc39.x86_64 openjpeg2-2.5.0-4.fc39.x86_64 pango-1.50.14-2.fc39.x86_64 pixman-0.42.2-2.fc39.x86_64 poppler-23.08.0-1.fc39.x86_64 poppler-data-0.4.11-5.fc39.noarch poppler-glib-23.08.0-1.fc39.x86_64 protobuf-3.19.6-6.fc39.x86_64 pyproject-rpm-macros-1.9.0-2.fc39.noarch python-pip-wheel-23.2.1-1.fc39.noarch python-rpm-macros-3.12-2.fc39.noarch python3-3.12.0~b4-3.fc39.x86_64 python3-appdirs-1.4.4-11.fc39.noarch python3-biopython-1.81-4.fc39.x86_64 python3-brotli-1.0.9-13.fc39.x86_64 python3-cairo-1.24.0-2.fc39.x86_64 python3-charset-normalizer-3.2.0-2.fc39.noarch python3-contourpy-1.1.0-2.fc39.x86_64 python3-cycler-0.11.0-9.fc39.noarch python3-dateutil-1:2.8.2-10.fc39.noarch python3-devel-3.12.0~b4-3.fc39.x86_64 python3-fonttools-4.42.0-1.fc39.x86_64 python3-fs-2.4.16-5.fc39.noarch python3-idna-3.4-4.fc39.noarch python3-isodate-0.6.1-9.fc39.noarch python3-kiwisolver-1.4.4-9.fc39.x86_64 python3-libs-3.12.0~b4-3.fc39.x86_64 python3-lxml-4.9.3-2.fc39.x86_64 python3-matplotlib-3.7.2-2.fc39.x86_64 python3-matplotlib-data-3.7.2-2.fc39.noarch python3-matplotlib-data-fonts-3.7.2-2.fc39.noarch python3-matplotlib-tk-3.7.2-2.fc39.x86_64 python3-munkres-1.1.2-16.fc39.noarch python3-mysqlclient-2.1.1-5.fc39.x86_64 python3-networkx-3.1-4.fc39~bootstrap.noarch python3-nose-1.3.7-42.fc39.noarch python3-numpy-1:1.24.4-2.fc39.x86_64 python3-numpy-f2py-1:1.24.4-2.fc39.x86_64 python3-olefile-0.46-21.fc39.noarch python3-packaging-23.1-4.fc39.noarch python3-pillow-10.0.0-2.fc39.x86_64 python3-pillow-tk-10.0.0-2.fc39.x86_64 python3-pooch-1.5.2-12.fc39.noarch python3-protobuf-3.19.6-6.fc39.x86_64 python3-psycopg2-2.9.6-3.fc39.x86_64 python3-pygraphviz-1.11-3.fc39.x86_64 python3-pyparsing-3.0.9-11.fc39.noarch python3-pysocks-1.7.1-20.fc39.noarch python3-rdflib-6.2.0-4.fc39.noarch python3-reportlab-4.0.4-3.fc39.noarch python3-requests-2.28.2-5.fc39.noarch python3-rpm-generators-14-7.fc39.noarch python3-rpm-macros-3.12-2.fc39.noarch python3-scipy-1.11.1-1.fc39.x86_64 python3-setuptools-67.7.2-5.fc39.noarch python3-six-1.16.0-12.fc39.noarch python3-tkinter-3.12.0~b4-3.fc39.x86_64 python3-urllib3-1.26.16-2.fc39.noarch python3-urllib3+socks-1.26.16-2.fc39.noarch rav1e-libs-0.6.6-2.fc39.x86_64 rsvg-pixbuf-loader-2.56.90-9.fc39.x86_64 shared-mime-info-2.2-4.fc39.x86_64 svt-av1-libs-1.4.1-3.fc39.x86_64 tcl-1:8.6.12-5.fc39.x86_64 tk-1:8.6.12-5.fc39.x86_64 urw-base35-bookman-fonts-20200910-18.fc39.noarch urw-base35-c059-fonts-20200910-18.fc39.noarch urw-base35-d050000l-fonts-20200910-18.fc39.noarch urw-base35-fonts-20200910-18.fc39.noarch urw-base35-fonts-common-20200910-18.fc39.noarch urw-base35-gothic-fonts-20200910-18.fc39.noarch urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39.noarch urw-base35-nimbus-roman-fonts-20200910-18.fc39.noarch urw-base35-nimbus-sans-fonts-20200910-18.fc39.noarch urw-base35-p052-fonts-20200910-18.fc39.noarch urw-base35-standard-symbols-ps-fonts-20200910-18.fc39.noarch urw-base35-z003-fonts-20200910-18.fc39.noarch wise2-2.4.1-18.fc39.x86_64 xml-common-0.6.3-61.fc39.noarch xorg-x11-fonts-ISO8859-1-100dpi-7.5-36.fc39.noarch Complete! Finish: build setup for ProDy-2.4.0-4.fc40.src.rpm Start: rpmbuild ProDy-2.4.0-4.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689724800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.xEh6Or + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf ProDy-2.4.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ProDy-2.4.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd ProDy-2.4.0 + rm -rf /builddir/build/BUILD/ProDy-2.4.0-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.0-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/ProDy-change_requires.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find prody/proteins/ccealign -name '*.h' -exec chmod 0644 '{}' ';' + find prody/proteins/ccealign -name '*.cpp' -exec chmod 0644 '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.1et4Tw + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib.linux-x86_64-cpython-312 creating build/lib.linux-x86_64-cpython-312/prody copying prody/__init__.py -> build/lib.linux-x86_64-cpython-312/prody creating build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/subset.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/selection.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/select.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/segment.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/residue.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/pointer.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/nbexclusion.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/improper.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/hierview.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/functions.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/flags.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/fields.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/donor.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/dihedral.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/crossterm.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/chain.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/bond.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/atommap.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/atomic.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/atomgroup.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/atom.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/angle.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/acceptor.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/atomic creating build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/uniprot.py -> build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/quartataweb.py -> build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/pfam.py -> build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/goa.py -> build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/dali.py -> build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/cath.py -> build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/database creating build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/vmdfile.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/signature.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/sampling.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/rtb.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/plotting.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/perturb.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/pca.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/nmdfile.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/nma.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/modeset.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/mode.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/mechstiff.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/imanm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/heatmapper.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/gnm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/gamma.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/functions.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/exgnm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/exanm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/essa.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/entropy.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/editing.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/compare.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/clustenm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/bbenm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/anm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/analysis.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/adaptive.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics creating build/lib.linux-x86_64-cpython-312/prody/ensemble copying prody/ensemble/pdbensemble.py -> build/lib.linux-x86_64-cpython-312/prody/ensemble copying prody/ensemble/functions.py -> build/lib.linux-x86_64-cpython-312/prody/ensemble copying prody/ensemble/ensemble.py -> build/lib.linux-x86_64-cpython-312/prody/ensemble copying prody/ensemble/conformation.py -> build/lib.linux-x86_64-cpython-312/prody/ensemble copying prody/ensemble/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/ensemble creating build/lib.linux-x86_64-cpython-312/prody/kdtree copying prody/kdtree/kdtree.py -> build/lib.linux-x86_64-cpython-312/prody/kdtree copying prody/kdtree/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/kdtree creating build/lib.linux-x86_64-cpython-312/prody/measure copying prody/measure/transform.py -> build/lib.linux-x86_64-cpython-312/prody/measure copying prody/measure/measure.py -> build/lib.linux-x86_64-cpython-312/prody/measure copying prody/measure/contacts.py -> build/lib.linux-x86_64-cpython-312/prody/measure copying prody/measure/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/measure creating build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/wwpdb.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/stride.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/starfile.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/pdbfile.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/pdbclusters.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/localpdb.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/header.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/functions.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/emdfile.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/dssp.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/compare.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/cifheader.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/ciffile.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/blastpdb.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/proteins creating build/lib.linux-x86_64-cpython-312/prody/sequence copying prody/sequence/sequence.py -> build/lib.linux-x86_64-cpython-312/prody/sequence copying prody/sequence/plotting.py -> build/lib.linux-x86_64-cpython-312/prody/sequence copying prody/sequence/msafile.py -> build/lib.linux-x86_64-cpython-312/prody/sequence copying prody/sequence/msa.py -> build/lib.linux-x86_64-cpython-312/prody/sequence copying prody/sequence/analysis.py -> build/lib.linux-x86_64-cpython-312/prody/sequence copying prody/sequence/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/sequence creating build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/trajfile.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/trajectory.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/trajbase.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/psffile.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/frame.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/dcdfile.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory creating build/lib.linux-x86_64-cpython-312/prody/chromatin copying prody/chromatin/straw.py -> build/lib.linux-x86_64-cpython-312/prody/chromatin copying prody/chromatin/norm.py -> build/lib.linux-x86_64-cpython-312/prody/chromatin copying prody/chromatin/hic.py -> build/lib.linux-x86_64-cpython-312/prody/chromatin copying prody/chromatin/functions.py -> build/lib.linux-x86_64-cpython-312/prody/chromatin copying prody/chromatin/cluster.py -> build/lib.linux-x86_64-cpython-312/prody/chromatin copying prody/chromatin/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/chromatin creating build/lib.linux-x86_64-cpython-312/prody/compounds copying prody/compounds/pdbligands.py -> build/lib.linux-x86_64-cpython-312/prody/compounds copying prody/compounds/functions.py -> build/lib.linux-x86_64-cpython-312/prody/compounds copying prody/compounds/ccd.py -> build/lib.linux-x86_64-cpython-312/prody/compounds copying prody/compounds/bird.py -> build/lib.linux-x86_64-cpython-312/prody/compounds copying prody/compounds/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/compounds creating build/lib.linux-x86_64-cpython-312/prody/domain_decomposition copying prody/domain_decomposition/spectrus.py -> build/lib.linux-x86_64-cpython-312/prody/domain_decomposition copying prody/domain_decomposition/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/domain_decomposition creating build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/settings.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/seqtools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/pathtools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/misctools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/logger.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/legacy.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/laptools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/eigtools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/drawtools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/doctools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/checkers.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/catchall.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/TreeConstruction.py -> build/lib.linux-x86_64-cpython-312/prody/utilities creating build/lib.linux-x86_64-cpython-312/prody/apps copying prody/apps/apptools.py -> build/lib.linux-x86_64-cpython-312/prody/apps copying prody/apps/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/apps creating build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_energy.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps creating build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps creating build/lib.linux-x86_64-cpython-312/prody/tests copying prody/tests/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests creating build/lib.linux-x86_64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-x86_64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-x86_64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-x86_64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-x86_64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-x86_64-cpython-312/prody/tests/apps copying prody/tests/apps/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/apps creating build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_subset.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_select.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_hierview.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_fragment.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_atommap.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_atomic.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic creating build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles creating build/lib.linux-x86_64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_signature.py -> build/lib.linux-x86_64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_pca.py -> build/lib.linux-x86_64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_enms.py -> build/lib.linux-x86_64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_editing.py -> build/lib.linux-x86_64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/dynamics creating build/lib.linux-x86_64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-x86_64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_functions.py -> build/lib.linux-x86_64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-x86_64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-x86_64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/ensemble creating build/lib.linux-x86_64-cpython-312/prody/tests/kdtree copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-x86_64-cpython-312/prody/tests/kdtree copying prody/tests/kdtree/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/kdtree creating build/lib.linux-x86_64-cpython-312/prody/tests/measure copying prody/tests/measure/test_transform.py -> build/lib.linux-x86_64-cpython-312/prody/tests/measure copying prody/tests/measure/test_measure.py -> build/lib.linux-x86_64-cpython-312/prody/tests/measure copying prody/tests/measure/test_contacts.py -> build/lib.linux-x86_64-cpython-312/prody/tests/measure copying prody/tests/measure/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/measure creating build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_header.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_dssp.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_ciffile.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins creating build/lib.linux-x86_64-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_sequence.py -> build/lib.linux-x86_64-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_msafile.py -> build/lib.linux-x86_64-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_msa.py -> build/lib.linux-x86_64-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_analysis.py -> build/lib.linux-x86_64-cpython-312/prody/tests/sequence copying prody/tests/sequence/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/sequence creating build/lib.linux-x86_64-cpython-312/prody/tests/trajectory copying prody/tests/trajectory/test_frame.py -> build/lib.linux-x86_64-cpython-312/prody/tests/trajectory copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-x86_64-cpython-312/prody/tests/trajectory copying prody/tests/trajectory/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/trajectory creating build/lib.linux-x86_64-cpython-312/prody/tests/utilities copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-x86_64-cpython-312/prody/tests/utilities copying prody/tests/utilities/test_misctools.py -> build/lib.linux-x86_64-cpython-312/prody/tests/utilities copying prody/tests/utilities/test_checkers.py -> build/lib.linux-x86_64-cpython-312/prody/tests/utilities copying prody/tests/utilities/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/utilities creating build/lib.linux-x86_64-cpython-312/prody/utilities/datafiles copying prody/utilities/datafiles/saxs_water.dat -> build/lib.linux-x86_64-cpython-312/prody/utilities/datafiles copying prody/utilities/datafiles/mod_res_map.dat -> build/lib.linux-x86_64-cpython-312/prody/utilities/datafiles copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3p3w.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3o21.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3hsy.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2nwl-opm.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_ca.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_vectors.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_evalues.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/hit1ubi.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_vectors.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_evalues.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/commute1ubi.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_cov.coo -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_hessian.coo -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6zu5.cif -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6yfy.cif -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles running build_ext building 'prody.dynamics.rtbtools' extension creating build/temp.linux-x86_64-cpython-312 creating build/temp.linux-x86_64-cpython-312/prody creating build/temp.linux-x86_64-cpython-312/prody/dynamics gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/dynamics/rtbtools.c -o build/temp.linux-x86_64-cpython-312/prody/dynamics/rtbtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/dynamics/rtbtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/dynamics/rtbtools.cpython-312-x86_64-linux-gnu.so building 'prody.dynamics.smtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/dynamics/smtools.c -o build/temp.linux-x86_64-cpython-312/prody/dynamics/smtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/dynamics/smtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/dynamics/smtools.cpython-312-x86_64-linux-gnu.so building 'prody.sequence.msatools' extension creating build/temp.linux-x86_64-cpython-312/prody/sequence gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/msatools.c -o build/temp.linux-x86_64-cpython-312/prody/sequence/msatools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/sequence/msatools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/sequence/msatools.cpython-312-x86_64-linux-gnu.so building 'prody.sequence.msaio' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/msaio.c -o build/temp.linux-x86_64-cpython-312/prody/sequence/msaio.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/sequence/msaio.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/sequence/msaio.cpython-312-x86_64-linux-gnu.so building 'prody.sequence.seqtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/seqtools.c -o build/temp.linux-x86_64-cpython-312/prody/sequence/seqtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/sequence/seqtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/sequence/seqtools.cpython-312-x86_64-linux-gnu.so building 'prody.kdtree._CKDTree' extension creating build/temp.linux-x86_64-cpython-312/prody/kdtree gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/kdtree/KDTree.c -o build/temp.linux-x86_64-cpython-312/prody/kdtree/KDTree.o gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-x86_64-cpython-312/prody/kdtree/KDTreemodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/kdtree/KDTree.o build/temp.linux-x86_64-cpython-312/prody/kdtree/KDTreemodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/kdtree/_CKDTree.cpython-312-x86_64-linux-gnu.so building 'prody.proteins.ccealign' extension creating build/temp.linux-x86_64-cpython-312/prody/proteins creating build/temp.linux-x86_64-cpython-312/prody/proteins/ccealign gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Iprody/utilities/tnt -I/usr/include/python3.12 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-x86_64-cpython-312/prody/proteins/ccealign/ccealignmodule.o In file included from prody/utilities/tnt/tnt.h:41, from prody/proteins/ccealign/ccealignmodule.h:43, from prody/proteins/ccealign/ccealignmodule.cpp:38: In member function ‘TNT::Array1D::set_(double*, double*, double const&)’, inlined from ‘TNT::Array1D::Array1D(int, double const&)’ at prody/utilities/tnt/tnt_array1d.h:118:6, inlined from ‘findBest(cePoint*, cePoint*, afp**, int, int, int)’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26: prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 260 | *p = a; | ~~~^~~ g++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/proteins/ccealign.cpython-312-x86_64-linux-gnu.so In member function ‘set_’, inlined from ‘__ct ’ at prody/utilities/tnt/tnt_array1d.h:118:6, inlined from ‘findBest’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26: prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘__builtin_memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 260 | *p = a; | ^ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.wSOG0e + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64 ++ dirname /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64 --prefix /usr running install /usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer, pypa/build or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64 creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12 creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-312/prody/tests/utilities/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-312/prody/tests/utilities/test_checkers.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-312/prody/tests/utilities/test_misctools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-312/prody/tests/utilities/test_pathtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory copying build/lib.linux-x86_64-cpython-312/prody/tests/trajectory/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory copying build/lib.linux-x86_64-cpython-312/prody/tests/trajectory/test_dcdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory copying build/lib.linux-x86_64-cpython-312/prody/tests/trajectory/test_frame.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-312/prody/tests/sequence/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-312/prody/tests/sequence/test_analysis.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-312/prody/tests/sequence/test_msa.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-312/prody/tests/sequence/test_msafile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-312/prody/tests/sequence/test_sequence.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/test_ciffile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/test_dssp.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/test_header.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/test_localpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/test_pdbfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/test_wwpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-312/prody/tests/measure/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-312/prody/tests/measure/test_contacts.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-312/prody/tests/measure/test_measure.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-312/prody/tests/measure/test_transform.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/kdtree copying build/lib.linux-x86_64-cpython-312/prody/tests/kdtree/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/kdtree copying build/lib.linux-x86_64-cpython-312/prody/tests/kdtree/test_kdtree.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/kdtree creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-312/prody/tests/ensemble/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-312/prody/tests/ensemble/test_conformation.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-312/prody/tests/ensemble/test_ensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-312/prody/tests/ensemble/test_functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-312/prody/tests/ensemble/test_pdbensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-312/prody/tests/dynamics/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-312/prody/tests/dynamics/test_editing.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-312/prody/tests/dynamics/test_enms.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-312/prody/tests/dynamics/test_pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-312/prody/tests/dynamics/test_signature.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/mmcif_6yfy.cif -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/mmcif_6zu5.cif -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/msa_Cys_knot.fasta -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/msa_Cys_knot.slx -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/msa_Cys_knot.sth -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/xmlSTI.xml -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/dcd2k39_truncated.dcd -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/anm1ubi_hessian.coo -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/exanm2nwl_hessian.coo -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pca2k39_cov.coo -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/rtb2gb1_hessian.coo -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/rtb2gb1_project.coo -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/anm1ubi_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/anm1ubi_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/commute1ubi.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/exanm2nwl_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/exanm2nwl_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/gnm1ubi_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/gnm1ubi_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/hit1ubi.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/msa_Cys_knot_di.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pca2k39_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pca2k39_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1ejg.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1r19_dssp.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1ubi.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1ubi_ca.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb2k39_ca.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb2k39_truncated.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb2nwl-opm.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb3hsy.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb3mht.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb3o21.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb3p3w.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdbRTER.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/test_atomic.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/test_atommap.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/test_fragment.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/test_hierview.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/test_select.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/test_subset.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/apps/test_prody_anm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/apps/test_prody_catdcd.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/apps/test_prody_examples.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/apps/test_prody_gnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/apps/test_prody_pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_coevol.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_conserv.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_fetch.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_filter.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_merge.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_occupancy.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_rankorder.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_refine.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_search.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/nmaoptions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_align.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_anm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_biomol.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_blast.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_catdcd.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_contacts.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_eda.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_energy.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_fetch.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_gnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_select.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps copying build/lib.linux-x86_64-cpython-312/prody/apps/apptools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/datafiles copying build/lib.linux-x86_64-cpython-312/prody/utilities/datafiles/mod_res_map.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/datafiles copying build/lib.linux-x86_64-cpython-312/prody/utilities/datafiles/saxs_water.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/datafiles copying build/lib.linux-x86_64-cpython-312/prody/utilities/TreeConstruction.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/catchall.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/checkers.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/doctools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/drawtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/eigtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/laptools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/legacy.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/logger.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/misctools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/pathtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/seqtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/settings.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/domain_decomposition copying build/lib.linux-x86_64-cpython-312/prody/domain_decomposition/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/domain_decomposition copying build/lib.linux-x86_64-cpython-312/prody/domain_decomposition/spectrus.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/domain_decomposition creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-312/prody/compounds/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-312/prody/compounds/bird.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-312/prody/compounds/ccd.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-312/prody/compounds/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-312/prody/compounds/pdbligands.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-312/prody/chromatin/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-312/prody/chromatin/cluster.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-312/prody/chromatin/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-312/prody/chromatin/hic.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-312/prody/chromatin/norm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-312/prody/chromatin/straw.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/dcdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/frame.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/psffile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/trajbase.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/trajectory.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/trajfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/seqtools.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/msaio.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/msatools.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/analysis.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/msa.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/msafile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/plotting.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/sequence.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/ccealign.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/blastpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/ciffile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/cifheader.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/compare.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/dssp.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/emdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/header.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/localpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/pdbclusters.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/pdbfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/starfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/stride.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/wwpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-312/prody/measure/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-312/prody/measure/contacts.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-312/prody/measure/measure.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-312/prody/measure/transform.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/measure creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/kdtree copying build/lib.linux-x86_64-cpython-312/prody/kdtree/_CKDTree.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/kdtree copying build/lib.linux-x86_64-cpython-312/prody/kdtree/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/kdtree copying build/lib.linux-x86_64-cpython-312/prody/kdtree/kdtree.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/kdtree creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-312/prody/ensemble/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-312/prody/ensemble/conformation.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-312/prody/ensemble/ensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-312/prody/ensemble/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-312/prody/ensemble/pdbensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/smtools.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/rtbtools.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/adaptive.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/analysis.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/anm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/bbenm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/clustenm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/compare.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/editing.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/entropy.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/essa.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/exanm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/exgnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/gamma.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/gnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/heatmapper.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/imanm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/mechstiff.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/mode.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/modeset.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/nma.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/nmdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/perturb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/plotting.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/rtb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/sampling.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/signature.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/vmdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/cath.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/dali.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/goa.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/pfam.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/quartataweb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/uniprot.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/acceptor.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/angle.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/atom.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/atomgroup.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/atomic.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/atommap.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/bond.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/chain.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/crossterm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/dihedral.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/donor.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/fields.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/flags.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/hierview.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/improper.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/nbexclusion.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/pointer.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/residue.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/segment.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/select.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/selection.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/subset.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_header.py to test_header.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure/test_measure.py to test_measure.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure/test_transform.py to test_transform.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/kdtree/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_select.py to test_select.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/apptools.py to apptools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/catchall.py to catchall.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/checkers.py to checkers.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/doctools.py to doctools.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/drawtools.py to drawtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/eigtools.py to eigtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/laptools.py to laptools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/legacy.py to legacy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/logger.py to logger.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/misctools.py to misctools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/pathtools.py to pathtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/seqtools.py to seqtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/settings.py to settings.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/domain_decomposition/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds/bird.py to bird.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds/ccd.py to ccd.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds/pdbligands.py to pdbligands.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin/cluster.py to cluster.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin/hic.py to hic.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin/norm.py to norm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin/straw.py to straw.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/frame.py to frame.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/psffile.py to psffile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/trajbase.py to trajbase.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/trajectory.py to trajectory.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/trajfile.py to trajfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence/analysis.py to analysis.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence/msa.py to msa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence/msafile.py to msafile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence/plotting.py to plotting.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence/sequence.py to sequence.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/blastpdb.py to blastpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/ciffile.py to ciffile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/cifheader.py to cifheader.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/compare.py to compare.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/dssp.py to dssp.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/emdfile.py to emdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/header.py to header.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py to localpdb.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/pdbfile.py to pdbfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/starfile.py to starfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/stride.py to stride.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/wwpdb.py to wwpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/measure/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/measure/contacts.py to contacts.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/measure/measure.py to measure.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/measure/transform.py to transform.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/kdtree/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/kdtree/kdtree.py to kdtree.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble/conformation.py to conformation.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble/ensemble.py to ensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/adaptive.py to adaptive.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/analysis.py to analysis.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/anm.py to anm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/bbenm.py to bbenm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/clustenm.py to clustenm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/compare.py to compare.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/editing.py to editing.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/entropy.py to entropy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/essa.py to essa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/exanm.py to exanm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/exgnm.py to exgnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/gamma.py to gamma.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/gnm.py to gnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/imanm.py to imanm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/mode.py to mode.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/modeset.py to modeset.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/nma.py to nma.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/pca.py to pca.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/perturb.py to perturb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/plotting.py to plotting.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/rtb.py to rtb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/sampling.py to sampling.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/signature.py to signature.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database/cath.py to cath.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database/dali.py to dali.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database/goa.py to goa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database/pfam.py to pfam.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database/quartataweb.py to quartataweb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database/uniprot.py to uniprot.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/acceptor.py to acceptor.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/angle.py to angle.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/atom.py to atom.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/atomgroup.py to atomgroup.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/atomic.py to atomic.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/atommap.py to atommap.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/bond.py to bond.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/chain.py to chain.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/crossterm.py to crossterm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/dihedral.py to dihedral.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/donor.py to donor.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/fields.py to fields.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/flags.py to flags.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/hierview.py to hierview.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/improper.py to improper.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/pointer.py to pointer.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/residue.py to residue.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/segment.py to segment.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/select.py to select.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/selection.py to selection.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/subset.py to subset.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/__init__.py to __init__.cpython-312.pyc writing byte-compilation script '/tmp/tmpdi0n28pr.py' /usr/bin/python3 /tmp/tmpdi0n28pr.py /usr/lib64/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib64/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' removing /tmp/tmpdi0n28pr.py running install_egg_info running egg_info creating ProDy.egg-info writing ProDy.egg-info/PKG-INFO writing dependency_links to ProDy.egg-info/dependency_links.txt writing entry points to ProDy.egg-info/entry_points.txt writing requirements to ProDy.egg-info/requires.txt writing top-level names to ProDy.egg-info/top_level.txt writing manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'prody/*/*/*.c' warning: no files found matching 'prody/*/*.cpp' warning: no files found matching 'prody/utilities/datafiles/*.txt' adding license file 'LICENSE.rst' writing manifest file 'ProDy.egg-info/SOURCES.txt' Copying ProDy.egg-info to /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12/site-packages/ProDy-2.4.0-py3.12.egg-info running install_scripts Installing evol script to /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/bin Installing prody script to /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/bin + rm -rfv /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/bin/__pycache__ + mkdir -p /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/bin + rm -f /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/bin/evol /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/bin/prody + cd scripts + cp -pr ./prody ./python3.12-prody + cp -pr ./evol ./python3.12-evol + sed -i '1s=^#!/usr/bin/\(python\|env python\)[0-9.]*=#!/usr/bin/python3=' ./prody ./evol ./python3.12-prody ./python3.12-evol + for i in prody-3.12 + touch -r ./python3.12-prody prody-3.12 + install -p prody-3.12 /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/bin + install -p ./prody /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/bin + install -p ./python3.12-prody /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/bin + ln -sf /usr/bin/python3.12-prody /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/bin/prody-3.12 + for i in evol-3.12 + touch -r ./python3.12-evol evol-3.12 + install -p evol-3.12 /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/bin + install -p ./evol /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/bin + install -p ./python3.12-evol /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/bin + ln -sf /usr/bin/python3.12-evol /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/bin/evol-3.12 + cd .. + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.4.0-4.fc40 --unique-debug-suffix -2.4.0-4.fc40.x86_64 --unique-debug-src-base ProDy-2.4.0-4.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/ProDy-2.4.0 find-debuginfo: starting Extracting debug info from 7 files DWARF-compressing 7 files sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/ProDy-2.4.0-4.fc40.x86_64 464 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib/debug/usr/lib64/python3.12 using python3.12 Bytecompiling .py files below /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/lib64/python3.12 using python3.12 /usr/lib64/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib64/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: python3-ProDy-2.4.0-4.fc40.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.tyo1xF + umask 022 + cd /builddir/build/BUILD + cd ProDy-2.4.0 + DOCDIR=/builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/share/doc/python3-ProDy + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/share/doc/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.0/README.rst /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/share/doc/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.4gvLOL + umask 022 + cd /builddir/build/BUILD + cd ProDy-2.4.0 + LICENSEDIR=/builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/share/licenses/python3-ProDy + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/share/licenses/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.0/LICENSE.rst /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64/usr/share/licenses/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/evol-3.12 -> /usr/bin/python3.12-evol warning: absolute symlink: /usr/bin/prody-3.12 -> /usr/bin/python3.12-prody Provides: ProDy = 0:2.4.0-4.fc40 python-ProDy = 2.4.0-4.fc40 python3-ProDy = 2.4.0-4.fc40 python3-ProDy(x86-64) = 2.4.0-4.fc40 python3.12-ProDy = 2.4.0-4.fc40 python3.12dist(prody) = 2.4 python3dist(prody) = 2.4 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.12 python3.12dist(biopython) python3.12dist(numpy) >= 1.10 python3.12dist(pyparsing) python3.12dist(scipy) python3.12dist(setuptools) Obsoletes: python-ProDy < 2.4.0-4.fc40 Processing files: ProDy-debugsource-2.4.0-4.fc40.x86_64 Provides: ProDy-debugsource = 2.4.0-4.fc40 ProDy-debugsource(x86-64) = 2.4.0-4.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-ProDy-debuginfo-2.4.0-4.fc40.x86_64 Provides: debuginfo(build-id) = 4b479c19744ba20c6a06e88f476dccdc78353f60 debuginfo(build-id) = 5e0215055f8fae1cb3022aa7c975c7c16609159e debuginfo(build-id) = 5fe20aa62db10a6ea0c8ecc9db7e93627d0ac526 debuginfo(build-id) = bb5fc34e77e7f61b8942a325c7050114e64c487f debuginfo(build-id) = da669de513dc4c3af8bd14544464df41132d21d9 debuginfo(build-id) = e31a5039a3ff410d52a9d2bd87b94e87efbe40b4 debuginfo(build-id) = fb8fcc6ac1ef7011fffb0301fd466ea548daca68 python-ProDy-debuginfo = 2.4.0-4.fc40 python3-ProDy-debuginfo = 2.4.0-4.fc40 python3-ProDy-debuginfo(x86-64) = 2.4.0-4.fc40 python3.12-ProDy-debuginfo = 2.4.0-4.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: ProDy-debugsource(x86-64) = 2.4.0-4.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64 Wrote: /builddir/build/RPMS/python3-ProDy-debuginfo-2.4.0-4.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/ProDy-debugsource-2.4.0-4.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/python3-ProDy-2.4.0-4.fc40.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.44c22g + umask 022 + cd /builddir/build/BUILD + cd ProDy-2.4.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.y2nDNS + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/ProDy-2.4.0-SPECPARTS + rm -rf ProDy-2.4.0 ProDy-2.4.0.gemspec + RPM_EC=0 RPM build warnings: ++ jobs -p + exit 0 absolute symlink: /usr/bin/evol-3.12 -> /usr/bin/python3.12-evol absolute symlink: /usr/bin/prody-3.12 -> /usr/bin/python3.12-prody Finish: rpmbuild ProDy-2.4.0-4.fc40.src.rpm Finish: build phase for ProDy-2.4.0-4.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1691542957.896581/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1691542957.896581/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1691542957.896581/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/ProDy-2.4.0-4.fc40.src.rpm) Config(child) 1 minutes 29 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool