Warning: Permanently added '34.201.12.205' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7741980-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.73 PID: 10042 Logging PID: 10043 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7741980, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '2fcd08cc14791650bc4d7a888d736e252bbe8c3d', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Rhtslib', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-Rhtslib', 'package_version': '2.4.1-2', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/releng', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/releng', 'tags': [], 'task_id': '7741980-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Rhtslib /var/lib/copr-rpmbuild/workspace/workdir-1xju6984/R-Rhtslib --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Rhtslib', '/var/lib/copr-rpmbuild/workspace/workdir-1xju6984/R-Rhtslib', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-1xju6984/R-Rhtslib'... Running: git checkout 2fcd08cc14791650bc4d7a888d736e252bbe8c3d -- cmd: ['git', 'checkout', '2fcd08cc14791650bc4d7a888d736e252bbe8c3d', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-1xju6984/R-Rhtslib rc: 0 stdout: stderr: Note: switching to '2fcd08cc14791650bc4d7a888d736e252bbe8c3d'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 2fcd08c automatic import of R-Rhtslib Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-1xju6984/R-Rhtslib rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Rhtslib_2.4.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o Rhtslib_2.4.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/R-Rhtslib/Rhtslib_2.4.1.tar.gz/md5/b7d295a694e865f4f4060c94c4bca446/Rhtslib_2.4.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 4474k 100 4474k 0 0 209M 0 --:--:-- --:--:-- --:--:-- 218M INFO: Reading stdout from command: md5sum Rhtslib_2.4.1.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-1xju6984/R-Rhtslib/R-Rhtslib.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-1xju6984/R-Rhtslib --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1721235467.918193 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-1xju6984/R-Rhtslib/R-Rhtslib.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-1xju6984/R-Rhtslib --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1721235467.918193 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-1xju6984/R-Rhtslib/R-Rhtslib.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1721235467.918193/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1721235467.918193/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/b24bdd3edc7bddb35a7c0fcda54368b23025b8dc8fb713bb3c26293c9ea25e5a/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/b24bdd3edc7bddb35a7c0fcda54368b23025b8dc8fb713bb3c26293c9ea25e5a/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf5 tooling Updating and loading repositories: Additional repo http_kojipkgs_fedorapr 100% | 106.1 MiB/s | 14.2 MiB | 00m00s fedora 100% | 24.5 MiB/s | 21.3 MiB | 00m01s Copr repository 100% | 58.5 MiB/s | 3.5 MiB | 00m00s Repositories loaded. Nothing to do. Package "dnf5-5.2.4.0-1.fc41.x86_64" is already installed. Package "dnf5-plugins-5.2.4.0-1.fc41.x86_64" is already installed. Finish(bootstrap): installing dnf5 tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1721235467.918193/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-2.fc41.x86_64 rpm-sequoia-1.7.0-1.fc41.x86_64 dnf5-5.2.4.0-1.fc41.x86_64 dnf5-plugins-5.2.4.0-1.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 27.5 MiB/s | 21.3 MiB | 00m01s Copr repository 100% | 67.5 MiB/s | 3.5 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 93.4 MiB/s | 14.2 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.1 MiB bzip2 x86_64 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 91.7 KiB coreutils x86_64 9.5-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.6 MiB cpio x86_64 2.15-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB diffutils x86_64 3.10-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB fedora-release-common noarch 41-0.16 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19.2 KiB findutils x86_64 1:4.10.0-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB gawk x86_64 5.3.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB glibc-minimal-langpack x86_64 2.39.9000-30.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B grep x86_64 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2.40.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.7 MiB which x86_64 2.21-41.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 80.2 KiB xz x86_64 1:5.6.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB Installing dependencies: add-determinism x86_64 0.3.3-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB alternatives x86_64 1.28-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 66.3 KiB ansible-srpm-macros noarch 1-15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.7 KiB audit-libs x86_64 4.0.1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 327.3 KiB authselect x86_64 1.5.0-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 153.6 KiB authselect-libs x86_64 1.5.0-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 818.3 KiB basesystem noarch 11-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B binutils x86_64 2.42.50-14.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 26.7 MiB build-reproducibility-srpm-macros noarch 0.3.3-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 735.0 B bzip2-libs x86_64 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 80.7 KiB ca-certificates noarch 2024.2.68_v8.0.302-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB coreutils-common x86_64 9.5-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.2 MiB cracklib x86_64 2.9.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 238.9 KiB crypto-policies noarch 20240717-1.git154fd4e.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 130.4 KiB curl x86_64 8.8.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 743.7 KiB cyrus-sasl-lib x86_64 2.1.28-24.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB debugedit x86_64 5.0-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 199.3 KiB dwz x86_64 0.15-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 290.9 KiB ed x86_64 1.20.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146.8 KiB efi-srpm-macros noarch 5-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 KiB elfutils x86_64 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB elfutils-debuginfod-client x86_64 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64.9 KiB elfutils-default-yama-scope noarch 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB elfutils-libelf x86_64 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB elfutils-libs x86_64 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 646.1 KiB fedora-gpg-keys noarch 41-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 124.7 KiB fedora-release noarch 41-0.16 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B fedora-release-identity-basic noarch 41-0.16 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0 B fedora-repos noarch 41-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 KiB fedora-repos-rawhide noarch 41-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 KiB file x86_64 5.45-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.5 KiB file-libs x86_64 5.45-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.9 MiB filesystem x86_64 3.18-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.0 B fonts-srpm-macros noarch 1:2.0.5-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55.8 KiB 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libsemanage x86_64 3.7-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 293.5 KiB libsepol x86_64 3.7-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 817.8 KiB libsmartcols x86_64 2.40.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 180.4 KiB libssh x86_64 0.10.6-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 513.3 KiB libssh-config noarch 0.10.6-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.0 B libstdc++ x86_64 14.1.1-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.8 MiB libtasn1 x86_64 4.19.0-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 175.7 KiB libtirpc x86_64 1.3.4-1.rc3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 202.8 KiB libtool-ltdl x86_64 2.4.7-11.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 66.1 KiB libunistring x86_64 1.1-7.fc41 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4.2.1-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 828.0 KiB ncurses-base noarch 6.4-12.20240127.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.2 KiB ncurses-libs x86_64 6.4-12.20240127.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 963.2 KiB ocaml-srpm-macros noarch 10-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB openblas-srpm-macros noarch 2-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0 B openldap x86_64 2.6.8-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 640.3 KiB openssl-libs x86_64 1:3.2.2-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.8 MiB p11-kit x86_64 0.25.5-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB p11-kit-trust x86_64 0.25.5-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 391.4 KiB package-notes-srpm-macros noarch 0.5-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam x86_64 1.6.1-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB pam-libs x86_64 1.6.1-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 135.0 KiB pcre2 x86_64 10.44-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 653.5 KiB pcre2-syntax noarch 10.44-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-55.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf x86_64 2.1.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 82.9 KiB pkgconf-m4 noarch 2.1.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13.9 KiB pkgconf-pkg-config x86_64 2.1.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 989.0 B popt x86_64 1.19-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.9 KiB publicsuffix-list-dafsa noarch 20240107-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.13.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 KiB python-srpm-macros noarch 3.13-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.14-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.7.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline x86_64 8.2-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 489.2 KiB rpm x86_64 4.19.92-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB rpm-build-libs x86_64 4.19.92-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 206.7 KiB rpm-libs x86_64 4.19.92-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 717.9 KiB rpm-sequoia x86_64 1.7.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB rust-srpm-macros noarch 26.3-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs x86_64 3.46.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB systemd-libs x86_64 256.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB util-linux-core x86_64 2.40.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB xxhash-libs x86_64 0.8.2-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.5 KiB xz-libs x86_64 1:5.6.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 214.4 KiB zig-srpm-macros noarch 1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip x86_64 3.0-40.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 703.2 KiB zlib-ng-compat x86_64 2.1.7-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134.0 KiB zstd x86_64 1.5.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 154 packages Total size of inbound packages is 52 MiB. Need to download 52 MiB. After this operation 179 MiB will be used (install 179 MiB, remove 0 B). [ 1/154] bzip2-0:1.0.8-18.fc40.x86_64 100% | 2.0 MiB/s | 52.4 KiB | 00m00s [ 2/154] bash-0:5.2.26-3.fc40.x86_64 100% | 51.0 MiB/s | 1.8 MiB | 00m00s [ 3/154] diffutils-0:3.10-5.fc40.x86_6 100% | 48.4 MiB/s | 396.8 KiB | 00m00s [ 4/154] cpio-0:2.15-1.fc40.x86_64 100% | 14.7 MiB/s | 285.1 KiB | 00m00s [ 5/154] fedora-release-common-0:41-0. 100% | 5.5 MiB/s | 22.5 KiB | 00m00s [ 6/154] coreutils-0:9.5-5.fc41.x86_64 100% | 19.7 MiB/s | 1.1 MiB | 00m00s [ 7/154] glibc-minimal-langpack-0:2.39 100% | 19.8 MiB/s | 121.6 KiB | 00m00s [ 8/154] findutils-1:4.10.0-3.fc41.x86 100% | 29.3 MiB/s | 539.6 KiB | 00m00s [ 9/154] grep-0:3.11-8.fc41.x86_64 100% | 47.1 MiB/s | 289.2 KiB | 00m00s [ 10/154] gawk-0:5.3.0-3.fc40.x86_64 100% | 46.0 MiB/s | 1.1 MiB | 00m00s [ 11/154] gzip-0:1.13-1.fc40.x86_64 100% | 22.9 MiB/s | 164.0 KiB | 00m00s [ 12/154] info-0:7.1-2.fc40.x86_64 100% | 22.3 MiB/s | 182.3 KiB | 00m00s [ 13/154] patch-0:2.7.6-24.fc40.x86_64 100% | 25.5 MiB/s | 130.7 KiB | 00m00s [ 14/154] redhat-rpm-config-0:293-1.fc4 100% | 10.5 MiB/s | 75.5 KiB | 00m00s [ 15/154] rpm-build-0:4.19.92-2.fc41.x8 100% | 12.3 MiB/s | 75.7 KiB | 00m00s [ 16/154] sed-0:4.9-1.fc40.x86_64 100% | 33.6 MiB/s | 309.2 KiB | 00m00s [ 17/154] shadow-utils-2:4.15.1-5.fc41. 100% | 96.9 MiB/s | 1.3 MiB | 00m00s [ 18/154] unzip-0:6.0-63.fc40.x86_64 100% | 25.7 MiB/s | 184.5 KiB | 00m00s [ 19/154] which-0:2.21-41.fc40.x86_64 100% | 8.1 MiB/s | 41.4 KiB | 00m00s [ 20/154] tar-2:1.35-3.fc40.x86_64 100% | 43.6 MiB/s | 847.4 KiB | 00m00s [ 21/154] util-linux-0:2.40.2-1.fc41.x8 100% | 82.7 MiB/s | 1.2 MiB | 00m00s [ 22/154] xz-1:5.6.2-1.fc41.x86_64 100% | 49.7 MiB/s | 457.7 KiB | 00m00s [ 23/154] xz-libs-1:5.6.2-1.fc41.x86_64 100% | 21.8 MiB/s | 111.6 KiB | 00m00s [ 24/154] audit-libs-0:4.0.1-3.fc41.x86 100% | 24.5 MiB/s | 125.3 KiB | 00m00s [ 25/154] authselect-libs-0:1.5.0-6.fc4 100% | 33.3 MiB/s | 204.9 KiB | 00m00s [ 26/154] libblkid-0:2.40.2-1.fc41.x86_ 100% | 20.3 MiB/s | 124.6 KiB | 00m00s [ 27/154] libcap-ng-0:0.8.5-2.fc41.x86_ 100% | 7.9 MiB/s | 32.5 KiB | 00m00s [ 28/154] glibc-0:2.39.9000-30.fc41.x86 100% | 85.7 MiB/s | 2.2 MiB | 00m00s [ 29/154] libfdisk-0:2.40.2-1.fc41.x86_ 100% | 26.0 MiB/s | 159.6 KiB | 00m00s [ 30/154] libmount-0:2.40.2-1.fc41.x86_ 100% | 30.3 MiB/s | 155.2 KiB | 00m00s [ 31/154] libselinux-0:3.7-3.fc41.x86_6 100% | 21.4 MiB/s | 87.6 KiB | 00m00s [ 32/154] libsmartcols-0:2.40.2-1.fc41. 100% | 20.4 MiB/s | 83.6 KiB | 00m00s [ 33/154] libutempter-0:1.2.1-14.fc41.x 100% | 6.5 MiB/s | 26.5 KiB | 00m00s [ 34/154] libuuid-0:2.40.2-1.fc41.x86_6 100% | 9.4 MiB/s | 28.8 KiB | 00m00s [ 35/154] ncurses-libs-0:6.4-12.2024012 100% | 40.6 MiB/s | 332.5 KiB | 00m00s [ 36/154] pam-0:1.6.1-4.fc41.x86_64 100% | 84.4 MiB/s | 518.3 KiB | 00m00s [ 37/154] pam-libs-0:1.6.1-4.fc41.x86_6 100% | 9.3 MiB/s | 57.2 KiB | 00m00s [ 38/154] readline-0:8.2-8.fc40.x86_64 100% | 34.7 MiB/s | 213.3 KiB | 00m00s [ 39/154] util-linux-core-0:2.40.2-1.fc 100% | 72.7 MiB/s | 521.1 KiB | 00m00s [ 40/154] systemd-libs-0:256.2-1.fc41.x 100% | 71.3 MiB/s | 730.5 KiB | 00m00s [ 41/154] bzip2-libs-0:1.0.8-18.fc40.x8 100% | 8.0 MiB/s | 40.9 KiB | 00m00s [ 42/154] zlib-ng-compat-0:2.1.7-1.fc41 100% | 12.6 MiB/s | 77.7 KiB | 00m00s [ 43/154] libacl-0:2.3.2-1.fc40.x86_64 100% | 6.0 MiB/s | 24.4 KiB | 00m00s [ 44/154] libcap-0:2.70-2.fc41.x86_64 100% | 16.8 MiB/s | 86.3 KiB | 00m00s [ 45/154] libattr-0:2.5.2-3.fc40.x86_64 100% | 5.9 MiB/s | 18.0 KiB | 00m00s [ 46/154] libgcc-0:14.1.1-7.fc41.x86_64 100% | 25.5 MiB/s | 130.4 KiB | 00m00s [ 47/154] libeconf-0:0.6.2-2.fc41.x86_6 100% | 7.8 MiB/s | 32.0 KiB | 00m00s [ 48/154] libsemanage-0:3.7-1.fc41.x86_ 100% | 18.9 MiB/s | 116.2 KiB | 00m00s [ 49/154] setup-0:2.15.0-4.fc41.noarch 100% | 16.1 MiB/s | 148.5 KiB | 00m00s [ 50/154] libxcrypt-0:4.4.36-5.fc40.x86 100% | 9.6 MiB/s | 118.1 KiB | 00m00s [ 51/154] debugedit-0:5.0-16.fc41.x86_6 100% | 9.7 MiB/s | 79.7 KiB | 00m00s [ 52/154] elfutils-0:0.191-7.fc41.x86_6 100% | 24.4 MiB/s | 524.4 KiB | 00m00s [ 53/154] elfutils-libelf-0:0.191-7.fc4 100% | 17.0 MiB/s | 208.5 KiB | 00m00s [ 54/154] file-0:5.45-6.fc41.x86_64 100% | 8.0 MiB/s | 49.1 KiB | 00m00s [ 55/154] libarchive-0:3.7.4-2.fc41.x86 100% | 56.9 MiB/s | 407.7 KiB | 00m00s [ 56/154] binutils-0:2.42.50-14.fc41.x8 100% | 139.8 MiB/s | 6.3 MiB | 00m00s [ 57/154] pkgconf-pkg-config-0:2.1.1-1. 100% | 1.1 MiB/s | 9.9 KiB | 00m00s [ 58/154] popt-0:1.19-6.fc40.x86_64 100% | 6.5 MiB/s | 59.6 KiB | 00m00s [ 59/154] rpm-libs-0:4.19.92-2.fc41.x86 100% | 43.2 MiB/s | 309.5 KiB | 00m00s [ 60/154] rpm-build-libs-0:4.19.92-2.fc 100% | 10.8 MiB/s | 99.2 KiB | 00m00s [ 61/154] rpm-0:4.19.92-2.fc41.x86_64 100% | 32.0 MiB/s | 523.9 KiB | 00m00s [ 62/154] curl-0:8.8.0-2.fc41.x86_64 100% | 36.8 MiB/s | 301.7 KiB | 00m00s [ 63/154] zstd-0:1.5.6-1.fc41.x86_64 100% | 42.5 MiB/s | 479.3 KiB | 00m00s [ 64/154] ansible-srpm-macros-0:1-15.fc 100% | 3.4 MiB/s | 20.9 KiB | 00m00s [ 65/154] build-reproducibility-srpm-ma 100% | 2.5 MiB/s | 10.2 KiB | 00m00s [ 66/154] dwz-0:0.15-6.fc40.x86_64 100% | 19.2 MiB/s | 137.8 KiB | 00m00s [ 67/154] efi-srpm-macros-0:5-11.fc40.n 100% | 3.6 MiB/s | 22.3 KiB | 00m00s [ 68/154] glibc-gconv-extra-0:2.39.9000 100% | 97.1 MiB/s | 1.7 MiB | 00m00s [ 69/154] fonts-srpm-macros-1:2.0.5-16. 100% | 5.2 MiB/s | 26.9 KiB | 00m00s [ 70/154] forge-srpm-macros-0:0.3.1-1.f 100% | 3.2 MiB/s | 19.4 KiB | 00m00s [ 71/154] fpc-srpm-macros-0:1.3-12.fc40 100% | 1.3 MiB/s | 7.8 KiB | 00m00s [ 72/154] ghc-srpm-macros-0:1.9.1-1.fc4 100% | 2.9 MiB/s | 9.0 KiB | 00m00s [ 73/154] gnat-srpm-macros-0:6-5.fc40.n 100% | 1.7 MiB/s | 8.8 KiB | 00m00s [ 74/154] go-srpm-macros-0:3.6.0-1.fc41 100% | 6.8 MiB/s | 27.9 KiB | 00m00s [ 75/154] kernel-srpm-macros-0:1.0-23.f 100% | 1.9 MiB/s | 9.8 KiB | 00m00s [ 76/154] lua-srpm-macros-0:1-13.fc40.n 100% | 2.8 MiB/s | 8.7 KiB | 00m00s [ 77/154] ocaml-srpm-macros-0:10-2.fc41 100% | 2.2 MiB/s | 9.1 KiB | 00m00s [ 78/154] openblas-srpm-macros-0:2-17.f 100% | 1.9 MiB/s | 7.7 KiB | 00m00s [ 79/154] perl-srpm-macros-0:1-55.fc41. 100% | 2.0 MiB/s | 8.4 KiB | 00m00s [ 80/154] package-notes-srpm-macros-0:0 100% | 1.4 MiB/s | 9.9 KiB | 00m00s [ 81/154] pyproject-srpm-macros-0:1.13. 100% | 3.2 MiB/s | 13.0 KiB | 00m00s [ 82/154] qt6-srpm-macros-0:6.7.2-2.fc4 100% | 2.9 MiB/s | 9.0 KiB | 00m00s [ 83/154] python-srpm-macros-0:3.13-2.f 100% | 3.9 MiB/s | 23.8 KiB | 00m00s [ 84/154] qt5-srpm-macros-0:5.15.14-2.f 100% | 2.2 MiB/s | 8.8 KiB | 00m00s [ 85/154] rust-srpm-macros-0:26.3-1.fc4 100% | 4.1 MiB/s | 12.5 KiB | 00m00s [ 86/154] zig-srpm-macros-0:1-2.fc40.no 100% | 2.0 MiB/s | 8.0 KiB | 00m00s [ 87/154] zip-0:3.0-40.fc40.x86_64 100% | 51.7 MiB/s | 264.8 KiB | 00m00s [ 88/154] pkgconf-0:2.1.1-1.fc41.x86_64 100% | 10.7 MiB/s | 43.9 KiB | 00m00s [ 89/154] libpkgconf-0:2.1.1-1.fc41.x86 100% | 6.2 MiB/s | 38.0 KiB | 00m00s [ 90/154] ed-0:1.20.2-1.fc41.x86_64 100% | 20.0 MiB/s | 81.9 KiB | 00m00s [ 91/154] pkgconf-m4-0:2.1.1-1.fc41.noa 100% | 1.2 MiB/s | 14.1 KiB | 00m00s [ 92/154] gdbm-1:1.23-6.fc40.x86_64 100% | 24.0 MiB/s | 147.4 KiB | 00m00s [ 93/154] authselect-0:1.5.0-6.fc41.x86 100% | 17.2 MiB/s | 141.1 KiB | 00m00s [ 94/154] gdbm-libs-1:1.23-6.fc40.x86_6 100% | 9.1 MiB/s | 56.2 KiB | 00m00s [ 95/154] libnsl2-0:2.0.1-1.fc40.x86_64 100% | 5.8 MiB/s | 29.6 KiB | 00m00s [ 96/154] libtirpc-0:1.3.4-1.rc3.fc41.x 100% | 15.1 MiB/s | 92.5 KiB | 00m00s [ 97/154] libpwquality-0:1.4.5-10.fc41. 100% | 11.7 MiB/s | 108.1 KiB | 00m00s [ 98/154] crypto-policies-0:20240717-1. 100% | 7.1 MiB/s | 65.4 KiB | 00m00s [ 99/154] ca-certificates-0:2024.2.68_v 100% | 71.5 MiB/s | 879.1 KiB | 00m00s [100/154] openssl-libs-1:3.2.2-4.fc41.x 100% | 100.4 MiB/s | 2.3 MiB | 00m00s [101/154] ncurses-base-0:6.4-12.2024012 100% | 6.2 MiB/s | 63.8 KiB | 00m00s [102/154] krb5-libs-0:1.21.3-1.fc41.x86 100% | 56.5 MiB/s | 752.4 KiB | 00m00s [103/154] libcom_err-0:1.47.1-1.fc41.x8 100% | 4.3 MiB/s | 26.2 KiB | 00m00s [104/154] libsepol-0:3.7-1.fc41.x86_64 100% | 41.8 MiB/s | 342.0 KiB | 00m00s [105/154] cracklib-0:2.9.11-5.fc40.x86_ 100% | 15.9 MiB/s | 81.6 KiB | 00m00s [106/154] pcre2-0:10.44-1.fc41.x86_64 100% | 33.9 MiB/s | 243.0 KiB | 00m00s [107/154] libzstd-0:1.5.6-1.fc41.x86_64 100% | 43.1 MiB/s | 308.9 KiB | 00m00s [108/154] lz4-libs-0:1.9.4-6.fc40.x86_6 100% | 13.1 MiB/s | 67.2 KiB | 00m00s [109/154] libxml2-0:2.12.8-1.fc41.x86_6 100% | 61.0 MiB/s | 687.3 KiB | 00m00s [110/154] libverto-0:0.3.2-8.fc40.x86_6 100% | 5.0 MiB/s | 20.5 KiB | 00m00s [111/154] keyutils-libs-0:1.6.3-3.fc40. 100% | 4.4 MiB/s | 31.5 KiB | 00m00s [112/154] glibc-common-0:2.39.9000-30.f 100% | 79.0 MiB/s | 404.5 KiB | 00m00s [113/154] basesystem-0:11-20.fc40.noarc 100% | 1.8 MiB/s | 7.2 KiB | 00m00s [114/154] file-libs-0:5.45-6.fc41.x86_6 100% | 74.4 MiB/s | 761.7 KiB | 00m00s [115/154] mpfr-0:4.2.1-4.fc41.x86_64 100% | 25.9 MiB/s | 345.2 KiB | 00m00s [116/154] filesystem-0:3.18-9.fc41.x86_ 100% | 66.8 MiB/s | 1.1 MiB | 00m00s [117/154] fedora-repos-0:41-0.2.noarch 100% | 1.8 MiB/s | 9.3 KiB | 00m00s [118/154] elfutils-debuginfod-client-0: 100% | 3.1 MiB/s | 38.2 KiB | 00m00s [119/154] elfutils-libs-0:0.191-7.fc41. 100% | 21.0 MiB/s | 258.1 KiB | 00m00s [120/154] libstdc++-0:14.1.1-7.fc41.x86 100% | 43.2 MiB/s | 885.1 KiB | 00m00s [121/154] p11-kit-0:0.25.5-2.fc41.x86_6 100% | 58.2 MiB/s | 477.1 KiB | 00m00s [122/154] p11-kit-trust-0:0.25.5-2.fc41 100% | 18.4 MiB/s | 132.0 KiB | 00m00s [123/154] coreutils-common-0:9.5-5.fc41 100% | 91.1 MiB/s | 2.1 MiB | 00m00s [124/154] alternatives-0:1.28-1.fc41.x8 100% | 8.0 MiB/s | 40.8 KiB | 00m00s [125/154] add-determinism-0:0.3.3-1.fc4 100% | 59.3 MiB/s | 850.8 KiB | 00m00s [126/154] jansson-0:2.13.1-9.fc40.x86_6 100% | 8.6 MiB/s | 44.2 KiB | 00m00s [127/154] lua-libs-0:5.4.6-5.fc40.x86_6 100% | 14.3 MiB/s | 131.9 KiB | 00m00s [128/154] sqlite-libs-0:3.46.0-2.fc41.x 100% | 77.3 MiB/s | 712.5 KiB | 00m00s [129/154] rpm-sequoia-0:1.7.0-1.fc41.x8 100% | 51.3 MiB/s | 892.4 KiB | 00m00s [130/154] libgomp-0:14.1.1-7.fc41.x86_6 100% | 42.9 MiB/s | 351.1 KiB | 00m00s [131/154] pcre2-syntax-0:10.44-1.fc41.n 100% | 20.9 MiB/s | 149.8 KiB | 00m00s [132/154] libtasn1-0:4.19.0-6.fc40.x86_ 100% | 18.0 MiB/s | 73.7 KiB | 00m00s [133/154] libffi-0:3.4.6-1.fc41.x86_64 100% | 9.8 MiB/s | 40.0 KiB | 00m00s [134/154] fedora-repos-rawhide-0:41-0.2 100% | 2.2 MiB/s | 8.9 KiB | 00m00s [135/154] fedora-gpg-keys-0:41-0.2.noar 100% | 23.8 MiB/s | 121.8 KiB | 00m00s [136/154] elfutils-default-yama-scope-0 100% | 4.3 MiB/s | 13.3 KiB | 00m00s [137/154] fedora-release-0:41-0.16.noar 100% | 2.9 MiB/s | 11.7 KiB | 00m00s [138/154] gmp-1:6.3.0-1.fc41.x86_64 100% | 51.6 MiB/s | 316.8 KiB | 00m00s [139/154] fedora-release-identity-basic 100% | 3.0 MiB/s | 12.5 KiB | 00m00s [140/154] libcurl-0:8.8.0-2.fc41.x86_64 100% | 69.6 MiB/s | 356.2 KiB | 00m00s [141/154] xxhash-libs-0:0.8.2-2.fc40.x8 100% | 9.0 MiB/s | 36.9 KiB | 00m00s [142/154] gdb-minimal-0:14.2-14.fc41.x8 100% | 226.0 MiB/s | 4.3 MiB | 00m00s [143/154] libbrotli-0:1.1.0-4.fc41.x86_ 100% | 47.1 MiB/s | 337.9 KiB | 00m00s [144/154] libnghttp2-0:1.62.1-1.fc41.x8 100% | 15.0 MiB/s | 76.7 KiB | 00m00s [145/154] libidn2-0:2.3.7-1.fc40.x86_64 100% | 10.0 MiB/s | 112.4 KiB | 00m00s [146/154] libpsl-0:0.21.5-3.fc40.x86_64 100% | 10.4 MiB/s | 63.9 KiB | 00m00s [147/154] libssh-0:0.10.6-6.fc41.x86_64 100% | 34.4 MiB/s | 211.5 KiB | 00m00s [148/154] openldap-0:2.6.8-3.fc41.x86_6 100% | 35.6 MiB/s | 255.5 KiB | 00m00s [149/154] libtool-ltdl-0:2.4.7-11.fc41. 100% | 8.7 MiB/s | 35.4 KiB | 00m00s [150/154] libevent-0:2.1.12-13.fc41.x86 100% | 35.9 MiB/s | 257.2 KiB | 00m00s [151/154] cyrus-sasl-lib-0:2.1.28-24.fc 100% | 55.4 MiB/s | 794.6 KiB | 00m00s [152/154] libssh-config-0:0.10.6-6.fc41 100% | 1.8 MiB/s | 9.1 KiB | 00m00s [153/154] libunistring-0:1.1-7.fc41.x86 100% | 76.1 MiB/s | 545.4 KiB | 00m00s [154/154] publicsuffix-list-dafsa-0:202 100% | 8.1 MiB/s | 58.1 KiB | 00m00s -------------------------------------------------------------------------------- [154/154] Total 100% | 108.6 MiB/s | 52.4 MiB | 00m00s Running transaction [ 1/156] Verify package files 100% | 944.0 B/s | 154.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-9.fc41.x86_64 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-9.fc41.x86_64 [ 2/156] Prepare transaction 100% | 4.3 KiB/s | 154.0 B | 00m00s [ 3/156] Installing libgcc-0:14.1.1-7. 100% | 269.8 MiB/s | 276.3 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.1.1-7.fc41.x86_64 >>> Stop post-install scriptlet: libgcc-0:14.1.1-7.fc41.x86_64 [ 4/156] Installing publicsuffix-list- 100% | 0.0 B/s | 68.3 KiB | 00m00s [ 5/156] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/156] Installing fedora-release-ide 100% | 0.0 B/s | 952.0 B | 00m00s [ 7/156] Installing fedora-gpg-keys-0: 100% | 55.2 MiB/s | 169.7 KiB | 00m00s [ 8/156] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 9/156] Installing fedora-repos-0:41- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/156] Installing fedora-release-com 100% | 23.0 MiB/s | 23.5 KiB | 00m00s [ 11/156] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/156] Installing setup-0:2.15.0-4.f 100% | 70.9 MiB/s | 726.1 KiB | 00m00s >>> Running post-install scriptlet: setup-0:2.15.0-4.fc41.noarch >>> Stop post-install scriptlet: setup-0:2.15.0-4.fc41.noarch [ 13/156] Installing filesystem-0:3.18- 100% | 3.6 MiB/s | 212.5 KiB | 00m00s [ 14/156] Installing basesystem-0:11-20 100% | 0.0 B/s | 124.0 B | 00m00s [ 15/156] Installing pcre2-syntax-0:10. 100% | 248.1 MiB/s | 254.1 KiB | 00m00s [ 16/156] Installing coreutils-common-0 100% | 399.6 MiB/s | 11.2 MiB | 00m00s [ 17/156] Installing ncurses-base-0:6.4 100% | 85.8 MiB/s | 351.6 KiB | 00m00s [ 18/156] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 19/156] Installing ncurses-libs-0:6.4 100% | 236.7 MiB/s | 969.7 KiB | 00m00s >>> Running pre-install scriptlet: glibc-0:2.39.9000-30.fc41.x86_64 >>> Stop pre-install scriptlet: glibc-0:2.39.9000-30.fc41.x86_64 warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 20/156] Installing glibc-0:2.39.9000- 100% | 246.6 MiB/s | 6.7 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.39.9000-30.fc41.x86_64 >>> Stop post-install scriptlet: glibc-0:2.39.9000-30.fc41.x86_64 [ 21/156] Installing bash-0:5.2.26-3.fc 100% | 408.1 MiB/s | 8.2 MiB | 00m00s >>> Running post-install scriptlet: bash-0:5.2.26-3.fc40.x86_64 >>> Stop post-install scriptlet: bash-0:5.2.26-3.fc40.x86_64 [ 22/156] Installing glibc-common-0:2.3 100% | 207.0 MiB/s | 1.0 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 23/156] Installing glibc-gconv-extra- 100% | 246.7 MiB/s | 7.9 MiB | 00m00s >>> Running post-install scriptlet: glibc-gconv-extra-0:2.39.9000-30.fc41.x86_64 >>> Stop post-install scriptlet: glibc-gconv-extra-0:2.39.9000-30.fc41.x86_64 [ 24/156] Installing zlib-ng-compat-0:2 100% | 131.7 MiB/s | 134.8 KiB | 00m00s [ 25/156] Installing xz-libs-1:5.6.2-1. 100% | 210.4 MiB/s | 215.5 KiB | 00m00s [ 26/156] Installing bzip2-libs-0:1.0.8 100% | 0.0 B/s | 81.8 KiB | 00m00s [ 27/156] Installing libuuid-0:2.40.2-1 100% | 0.0 B/s | 38.4 KiB | 00m00s [ 28/156] Installing readline-0:8.2-8.f 100% | 479.9 MiB/s | 491.4 KiB | 00m00s [ 29/156] Installing popt-0:1.19-6.fc40 100% | 70.1 MiB/s | 143.5 KiB | 00m00s [ 30/156] Installing libblkid-0:2.40.2- 100% | 253.6 MiB/s | 259.7 KiB | 00m00s [ 31/156] Installing libattr-0:2.5.2-3. 100% | 0.0 B/s | 29.5 KiB | 00m00s [ 32/156] Installing libacl-0:2.3.2-1.f 100% | 0.0 B/s | 40.8 KiB | 00m00s [ 33/156] Installing libxcrypt-0:4.4.36 100% | 259.3 MiB/s | 265.5 KiB | 00m00s [ 34/156] Installing libzstd-0:1.5.6-1. 100% | 385.3 MiB/s | 789.2 KiB | 00m00s [ 35/156] Installing elfutils-libelf-0: 100% | 389.8 MiB/s | 1.2 MiB | 00m00s [ 36/156] Installing libstdc++-0:14.1.1 100% | 395.8 MiB/s | 2.8 MiB | 00m00s [ 37/156] Installing gmp-1:6.3.0-1.fc41 100% | 393.4 MiB/s | 805.6 KiB | 00m00s [ 38/156] Installing libeconf-0:0.6.2-2 100% | 0.0 B/s | 59.7 KiB | 00m00s [ 39/156] Installing gdbm-libs-1:1.23-6 100% | 0.0 B/s | 123.6 KiB | 00m00s [ 40/156] Installing mpfr-0:4.2.1-4.fc4 100% | 405.1 MiB/s | 829.7 KiB | 00m00s [ 41/156] Installing gawk-0:5.3.0-3.fc4 100% | 345.6 MiB/s | 1.7 MiB | 00m00s [ 42/156] Installing dwz-0:0.15-6.fc40. 100% | 285.5 MiB/s | 292.3 KiB | 00m00s [ 43/156] Installing unzip-0:6.0-63.fc4 100% | 377.3 MiB/s | 386.3 KiB | 00m00s [ 44/156] Installing file-libs-0:5.45-6 100% | 662.0 MiB/s | 9.9 MiB | 00m00s [ 45/156] Installing file-0:5.45-6.fc41 100% | 17.1 MiB/s | 105.0 KiB | 00m00s >>> Running pre-install scriptlet: crypto-policies-0:20240717-1.git154fd4e.fc41. >>> Stop pre-install scriptlet: crypto-policies-0:20240717-1.git154fd4e.fc41.noa [ 46/156] Installing crypto-policies-0: 100% | 38.1 MiB/s | 156.1 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20240717-1.git154fd4e.fc41 >>> Stop post-install scriptlet: crypto-policies-0:20240717-1.git154fd4e.fc41.no [ 47/156] Installing libcap-ng-0:0.8.5- 100% | 0.0 B/s | 71.0 KiB | 00m00s [ 48/156] Installing audit-libs-0:4.0.1 100% | 321.7 MiB/s | 329.4 KiB | 00m00s [ 49/156] Installing pam-libs-0:1.6.1-4 100% | 134.1 MiB/s | 137.3 KiB | 00m00s [ 50/156] Installing libcap-0:2.70-2.fc 100% | 220.0 MiB/s | 225.2 KiB | 00m00s [ 51/156] Installing systemd-libs-0:256 100% | 338.3 MiB/s | 2.0 MiB | 00m00s [ 52/156] Installing libsmartcols-0:2.4 100% | 177.3 MiB/s | 181.5 KiB | 00m00s [ 53/156] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 68.3 KiB | 00m00s [ 54/156] Installing libsepol-0:3.7-1.f 100% | 399.8 MiB/s | 818.8 KiB | 00m00s [ 55/156] Installing pcre2-0:10.44-1.fc 100% | 319.8 MiB/s | 654.9 KiB | 00m00s [ 56/156] Installing libselinux-0:3.7-3 100% | 178.0 MiB/s | 182.3 KiB | 00m00s [ 57/156] Installing sed-0:4.9-1.fc40.x 100% | 283.1 MiB/s | 869.7 KiB | 00m00s [ 58/156] Installing grep-0:3.11-8.fc41 100% | 249.8 MiB/s | 1.0 MiB | 00m00s [ 59/156] Installing findutils-1:4.10.0 100% | 309.7 MiB/s | 1.9 MiB | 00m00s [ 60/156] Installing xz-1:5.6.2-1.fc41. 100% | 241.0 MiB/s | 1.2 MiB | 00m00s [ 61/156] Installing libmount-0:2.40.2- 100% | 344.5 MiB/s | 352.8 KiB | 00m00s [ 62/156] Installing lz4-libs-0:1.9.4-6 100% | 0.0 B/s | 130.5 KiB | 00m00s [ 63/156] Installing alternatives-0:1.2 100% | 0.0 B/s | 68.0 KiB | 00m00s [ 64/156] Installing lua-libs-0:5.4.6-5 100% | 275.7 MiB/s | 282.3 KiB | 00m00s [ 65/156] Installing libtasn1-0:4.19.0- 100% | 173.3 MiB/s | 177.5 KiB | 00m00s [ 66/156] Installing libunistring-0:1.1 100% | 432.7 MiB/s | 1.7 MiB | 00m00s [ 67/156] Installing libidn2-0:2.3.7-1. 100% | 163.6 MiB/s | 335.0 KiB | 00m00s [ 68/156] Installing libpsl-0:0.21.5-3. 100% | 0.0 B/s | 81.6 KiB | 00m00s [ 69/156] Installing zstd-0:1.5.6-1.fc4 100% | 419.0 MiB/s | 1.7 MiB | 00m00s [ 70/156] Installing util-linux-core-0: 100% | 297.1 MiB/s | 1.5 MiB | 00m00s [ 71/156] Installing tar-2:1.35-3.fc40. 100% | 421.5 MiB/s | 3.0 MiB | 00m00s [ 72/156] Installing libsemanage-0:3.7- 100% | 144.2 MiB/s | 295.2 KiB | 00m00s [ 73/156] Installing shadow-utils-2:4.1 100% | 166.8 MiB/s | 4.2 MiB | 00m00s >>> Running pre-install scriptlet: libutempter-0:1.2.1-14.fc41.x86_64 >>> Stop pre-install scriptlet: libutempter-0:1.2.1-14.fc41.x86_64 [ 74/156] Installing libutempter-0:1.2. 100% | 58.3 MiB/s | 59.7 KiB | 00m00s [ 75/156] Installing zip-0:3.0-40.fc40. 100% | 345.3 MiB/s | 707.1 KiB | 00m00s [ 76/156] Installing gdbm-1:1.23-6.fc40 100% | 227.4 MiB/s | 465.8 KiB | 00m00s [ 77/156] Installing cyrus-sasl-lib-0:2 100% | 384.4 MiB/s | 2.3 MiB | 00m00s [ 78/156] Installing libfdisk-0:2.40.2- 100% | 355.5 MiB/s | 364.0 KiB | 00m00s [ 79/156] Installing bzip2-0:1.0.8-18.f 100% | 93.9 MiB/s | 96.2 KiB | 00m00s [ 80/156] Installing libxml2-0:2.12.8-1 100% | 342.4 MiB/s | 1.7 MiB | 00m00s [ 81/156] Installing add-determinism-0: 100% | 451.6 MiB/s | 2.3 MiB | 00m00s [ 82/156] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 83/156] Installing sqlite-libs-0:3.46 100% | 357.3 MiB/s | 1.4 MiB | 00m00s [ 84/156] Installing ed-0:1.20.2-1.fc41 100% | 145.7 MiB/s | 149.2 KiB | 00m00s [ 85/156] Installing patch-0:2.7.6-24.f 100% | 258.1 MiB/s | 264.3 KiB | 00m00s [ 86/156] Installing elfutils-default-y 100% | 408.6 KiB/s | 2.0 KiB | 00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-7.fc41.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-7.fc41.noar [ 87/156] Installing elfutils-libs-0:0. 100% | 316.4 MiB/s | 648.0 KiB | 00m00s [ 88/156] Installing cpio-0:2.15-1.fc40 100% | 274.9 MiB/s | 1.1 MiB | 00m00s [ 89/156] Installing diffutils-0:3.10-5 100% | 317.2 MiB/s | 1.6 MiB | 00m00s [ 90/156] Installing libpkgconf-0:2.1.1 100% | 0.0 B/s | 75.3 KiB | 00m00s [ 91/156] Installing pkgconf-0:2.1.1-1. 100% | 83.4 MiB/s | 85.4 KiB | 00m00s [ 92/156] Installing keyutils-libs-0:1. 100% | 0.0 B/s | 55.8 KiB | 00m00s [ 93/156] Installing libverto-0:0.3.2-8 100% | 0.0 B/s | 31.3 KiB | 00m00s [ 94/156] Installing jansson-0:2.13.1-9 100% | 87.6 MiB/s | 89.7 KiB | 00m00s [ 95/156] Installing libgomp-0:14.1.1-7 100% | 512.6 MiB/s | 524.9 KiB | 00m00s [ 96/156] Installing libffi-0:3.4.6-1.f 100% | 81.8 MiB/s | 83.8 KiB | 00m00s [ 97/156] Installing p11-kit-0:0.25.5-2 100% | 275.9 MiB/s | 2.2 MiB | 00m00s [ 98/156] Installing p11-kit-trust-0:0. 100% | 48.0 MiB/s | 393.1 KiB | 00m00s >>> Running post-install scriptlet: p11-kit-trust-0:0.25.5-2.fc41.x86_64 >>> Stop post-install scriptlet: p11-kit-trust-0:0.25.5-2.fc41.x86_64 [ 99/156] Installing openssl-libs-1:3.2 100% | 391.3 MiB/s | 7.8 MiB | 00m00s [100/156] Installing coreutils-0:9.5-5. 100% | 280.3 MiB/s | 5.6 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-2.fc41.n >>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-2.fc41.noar [101/156] Installing ca-certificates-0: 100% | 4.1 MiB/s | 2.4 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-2.fc41. >>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-2.fc41.noa [102/156] Installing krb5-libs-0:1.21.3 100% | 287.4 MiB/s | 2.3 MiB | 00m00s [103/156] Installing libarchive-0:3.7.4 100% | 298.4 MiB/s | 916.6 KiB | 00m00s [104/156] Installing libtirpc-0:1.3.4-1 100% | 199.8 MiB/s | 204.6 KiB | 00m00s [105/156] Installing gzip-0:1.13-1.fc40 100% | 190.7 MiB/s | 390.6 KiB | 00m00s [106/156] Installing authselect-libs-0: 100% | 203.4 MiB/s | 833.2 KiB | 00m00s [107/156] Installing cracklib-0:2.9.11- 100% | 81.5 MiB/s | 250.3 KiB | 00m00s [108/156] Installing libpwquality-0:1.4 100% | 140.0 MiB/s | 430.1 KiB | 00m00s [109/156] Installing libnsl2-0:2.0.1-1. 100% | 57.7 MiB/s | 59.0 KiB | 00m00s [110/156] Installing pam-0:1.6.1-4.fc41 100% | 165.4 MiB/s | 1.8 MiB | 00m00s [111/156] Installing libssh-0:0.10.6-6. 100% | 251.7 MiB/s | 515.4 KiB | 00m00s [112/156] Installing rpm-sequoia-0:1.7. 100% | 394.6 MiB/s | 2.4 MiB | 00m00s [113/156] Installing rpm-libs-0:4.19.92 100% | 351.3 MiB/s | 719.4 KiB | 00m00s [114/156] Installing rpm-build-libs-0:4 100% | 202.6 MiB/s | 207.5 KiB | 00m00s [115/156] Installing libevent-0:2.1.12- 100% | 439.2 MiB/s | 899.4 KiB | 00m00s [116/156] Installing xxhash-libs-0:0.8. 100% | 0.0 B/s | 89.9 KiB | 00m00s [117/156] Installing libbrotli-0:1.1.0- 100% | 406.2 MiB/s | 831.8 KiB | 00m00s [118/156] Installing libnghttp2-0:1.62. 100% | 163.3 MiB/s | 167.2 KiB | 00m00s [119/156] Installing libtool-ltdl-0:2.4 100% | 0.0 B/s | 67.3 KiB | 00m00s [120/156] Installing openldap-0:2.6.8-3 100% | 314.5 MiB/s | 644.1 KiB | 00m00s [121/156] Installing libcurl-0:8.8.0-2. 100% | 395.9 MiB/s | 810.8 KiB | 00m00s [122/156] Installing elfutils-debuginfo 100% | 65.3 MiB/s | 66.9 KiB | 00m00s [123/156] Installing binutils-0:2.42.50 100% | 388.2 MiB/s | 26.8 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.42.50-14.fc41.x86_64 >>> Stop post-install scriptlet: binutils-0:2.42.50-14.fc41.x86_64 [124/156] Installing elfutils-0:0.191-7 100% | 364.6 MiB/s | 2.6 MiB | 00m00s [125/156] Installing gdb-minimal-0:14.2 100% | 398.4 MiB/s | 12.7 MiB | 00m00s [126/156] Installing debugedit-0:5.0-16 100% | 197.3 MiB/s | 202.0 KiB | 00m00s [127/156] Installing curl-0:8.8.0-2.fc4 100% | 72.9 MiB/s | 746.2 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.92-2.fc41.x86_64 >>> Stop pre-install scriptlet: rpm-0:4.19.92-2.fc41.x86_64 [128/156] Installing rpm-0:4.19.92-2.fc 100% | 191.6 MiB/s | 2.5 MiB | 00m00s [129/156] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.2 KiB | 00m00s [130/156] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [131/156] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [132/156] Installing pkgconf-m4-0:2.1.1 100% | 0.0 B/s | 14.3 KiB | 00m00s [133/156] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s [134/156] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [135/156] Installing qt6-srpm-macros-0: 100% | 714.8 KiB/s | 732.0 B | 00m00s [136/156] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [137/156] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [138/156] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [139/156] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [140/156] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [141/156] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [142/156] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [143/156] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [144/156] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [145/156] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [146/156] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [147/156] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.3 KiB | 00m00s [148/156] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 62.0 KiB | 00m00s [149/156] Installing python-srpm-macros 100% | 0.0 B/s | 52.2 KiB | 00m00s [150/156] Installing redhat-rpm-config- 100% | 185.6 MiB/s | 190.1 KiB | 00m00s [151/156] Installing rpm-build-0:4.19.9 100% | 99.1 MiB/s | 202.9 KiB | 00m00s [152/156] Installing pyproject-srpm-mac 100% | 2.0 MiB/s | 2.1 KiB | 00m00s [153/156] Installing util-linux-0:2.40. 100% | 178.5 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-1.fc41.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40.2-1.fc41.x86_64 [154/156] Installing authselect-0:1.5.0 100% | 77.1 MiB/s | 157.9 KiB | 00m00s [155/156] Installing which-0:2.21-41.fc 100% | 80.5 MiB/s | 82.4 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [156/156] Installing info-0:7.1-2.fc40. 100% | 459.8 KiB/s | 358.2 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-9.fc41.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-9.fc41.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-2.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-2.fc41 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-6.fc41.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-6.fc41.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.92-2.fc41.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.92-2.fc41.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-30.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-30.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 Complete! Warning: skipped PGP checks for 154 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.3-1.fc41.x86_64 alternatives-1.28-1.fc41.x86_64 ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-3.fc41.x86_64 authselect-1.5.0-6.fc41.x86_64 authselect-libs-1.5.0-6.fc41.x86_64 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.x86_64 binutils-2.42.50-14.fc41.x86_64 build-reproducibility-srpm-macros-0.3.3-1.fc41.noarch bzip2-1.0.8-18.fc40.x86_64 bzip2-libs-1.0.8-18.fc40.x86_64 ca-certificates-2024.2.68_v8.0.302-2.fc41.noarch coreutils-9.5-5.fc41.x86_64 coreutils-common-9.5-5.fc41.x86_64 cpio-2.15-1.fc40.x86_64 cracklib-2.9.11-5.fc40.x86_64 crypto-policies-20240717-1.git154fd4e.fc41.noarch curl-8.8.0-2.fc41.x86_64 cyrus-sasl-lib-2.1.28-24.fc41.x86_64 debugedit-5.0-16.fc41.x86_64 diffutils-3.10-5.fc40.x86_64 dwz-0.15-6.fc40.x86_64 ed-1.20.2-1.fc41.x86_64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-7.fc41.x86_64 elfutils-debuginfod-client-0.191-7.fc41.x86_64 elfutils-default-yama-scope-0.191-7.fc41.noarch elfutils-libelf-0.191-7.fc41.x86_64 elfutils-libs-0.191-7.fc41.x86_64 fedora-gpg-keys-41-0.2.noarch fedora-release-41-0.16.noarch fedora-release-common-41-0.16.noarch fedora-release-identity-basic-41-0.16.noarch fedora-repos-41-0.2.noarch fedora-repos-rawhide-41-0.2.noarch file-5.45-6.fc41.x86_64 file-libs-5.45-6.fc41.x86_64 filesystem-3.18-9.fc41.x86_64 findutils-4.10.0-3.fc41.x86_64 fonts-srpm-macros-2.0.5-16.fc41.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.x86_64 gdb-minimal-14.2-14.fc41.x86_64 gdbm-1.23-6.fc40.x86_64 gdbm-libs-1.23-6.fc40.x86_64 ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-30.fc41.x86_64 glibc-common-2.39.9000-30.fc41.x86_64 glibc-gconv-extra-2.39.9000-30.fc41.x86_64 glibc-minimal-langpack-2.39.9000-30.fc41.x86_64 gmp-6.3.0-1.fc41.x86_64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-8.fc41.x86_64 gzip-1.13-1.fc40.x86_64 info-7.1-2.fc40.x86_64 jansson-2.13.1-9.fc40.x86_64 kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.x86_64 krb5-libs-1.21.3-1.fc41.x86_64 libacl-2.3.2-1.fc40.x86_64 libarchive-3.7.4-2.fc41.x86_64 libattr-2.5.2-3.fc40.x86_64 libblkid-2.40.2-1.fc41.x86_64 libbrotli-1.1.0-4.fc41.x86_64 libcap-2.70-2.fc41.x86_64 libcap-ng-0.8.5-2.fc41.x86_64 libcom_err-1.47.1-1.fc41.x86_64 libcurl-8.8.0-2.fc41.x86_64 libeconf-0.6.2-2.fc41.x86_64 libevent-2.1.12-13.fc41.x86_64 libfdisk-2.40.2-1.fc41.x86_64 libffi-3.4.6-1.fc41.x86_64 libgcc-14.1.1-7.fc41.x86_64 libgomp-14.1.1-7.fc41.x86_64 libidn2-2.3.7-1.fc40.x86_64 libmount-2.40.2-1.fc41.x86_64 libnghttp2-1.62.1-1.fc41.x86_64 libnsl2-2.0.1-1.fc40.x86_64 libpkgconf-2.1.1-1.fc41.x86_64 libpsl-0.21.5-3.fc40.x86_64 libpwquality-1.4.5-10.fc41.x86_64 libselinux-3.7-3.fc41.x86_64 libsemanage-3.7-1.fc41.x86_64 libsepol-3.7-1.fc41.x86_64 libsmartcols-2.40.2-1.fc41.x86_64 libssh-0.10.6-6.fc41.x86_64 libssh-config-0.10.6-6.fc41.noarch libstdc++-14.1.1-7.fc41.x86_64 libtasn1-4.19.0-6.fc40.x86_64 libtirpc-1.3.4-1.rc3.fc41.x86_64 libtool-ltdl-2.4.7-11.fc41.x86_64 libunistring-1.1-7.fc41.x86_64 libutempter-1.2.1-14.fc41.x86_64 libuuid-2.40.2-1.fc41.x86_64 libverto-0.3.2-8.fc40.x86_64 libxcrypt-4.4.36-5.fc40.x86_64 libxml2-2.12.8-1.fc41.x86_64 libzstd-1.5.6-1.fc41.x86_64 lua-libs-5.4.6-5.fc40.x86_64 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.x86_64 mpfr-4.2.1-4.fc41.x86_64 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.x86_64 ocaml-srpm-macros-10-2.fc41.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.8-3.fc41.x86_64 openssl-libs-3.2.2-4.fc41.x86_64 p11-kit-0.25.5-2.fc41.x86_64 p11-kit-trust-0.25.5-2.fc41.x86_64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-4.fc41.x86_64 pam-libs-1.6.1-4.fc41.x86_64 patch-2.7.6-24.fc40.x86_64 pcre2-10.44-1.fc41.x86_64 pcre2-syntax-10.44-1.fc41.noarch perl-srpm-macros-1-55.fc41.noarch pkgconf-2.1.1-1.fc41.x86_64 pkgconf-m4-2.1.1-1.fc41.noarch pkgconf-pkg-config-2.1.1-1.fc41.x86_64 popt-1.19-6.fc40.x86_64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.13.0-1.fc41.noarch python-srpm-macros-3.13-2.fc41.noarch qt5-srpm-macros-5.15.14-2.fc41.noarch qt6-srpm-macros-6.7.2-2.fc41.noarch readline-8.2-8.fc40.x86_64 redhat-rpm-config-293-1.fc41.noarch rpm-4.19.92-2.fc41.x86_64 rpm-build-4.19.92-2.fc41.x86_64 rpm-build-libs-4.19.92-2.fc41.x86_64 rpm-libs-4.19.92-2.fc41.x86_64 rpm-sequoia-1.7.0-1.fc41.x86_64 rust-srpm-macros-26.3-1.fc41.noarch sed-4.9-1.fc40.x86_64 setup-2.15.0-4.fc41.noarch shadow-utils-4.15.1-5.fc41.x86_64 sqlite-libs-3.46.0-2.fc41.x86_64 systemd-libs-256.2-1.fc41.x86_64 tar-1.35-3.fc40.x86_64 unzip-6.0-63.fc40.x86_64 util-linux-2.40.2-1.fc41.x86_64 util-linux-core-2.40.2-1.fc41.x86_64 which-2.21-41.fc40.x86_64 xxhash-libs-0.8.2-2.fc40.x86_64 xz-5.6.2-1.fc41.x86_64 xz-libs-5.6.2-1.fc41.x86_64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.x86_64 zlib-ng-compat-2.1.7-1.fc41.x86_64 zstd-1.5.6-1.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721174400 Wrote: /builddir/build/SRPMS/R-Rhtslib-2.4.1-2.fc41.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-x86_64-1721235467.918193/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1721235467.918193/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-1xju6984/R-Rhtslib/R-Rhtslib.spec) Config(child) 0 minutes 23 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-Rhtslib-2.4.1-2.fc41.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1721235467.918193/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1721235467.918193/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1721235467.918193/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-2.fc41.x86_64 rpm-sequoia-1.7.0-1.fc41.x86_64 dnf5-5.2.4.0-1.fc41.x86_64 dnf5-plugins-5.2.4.0-1.fc41.x86_64 Finish: chroot init Start: build phase for R-Rhtslib-2.4.1-2.fc41.src.rpm Start: build setup for R-Rhtslib-2.4.1-2.fc41.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721174400 Wrote: /builddir/build/SRPMS/R-Rhtslib-2.4.1-2.fc41.src.rpm Updating and loading repositories: Copr repository 100% | 109.8 KiB/s | 1.5 KiB | 00m00s fedora 100% | 93.1 KiB/s | 24.8 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 255.3 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 58.5 MiB/s | 3.5 MiB | 00m00s Repositories loaded. 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0.8.0-44.20140228gitc2f5d13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.7 KiB ttmkfdir x86_64 3.0.9-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 122.7 KiB tzdata noarch 2024a-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB tzdata-java noarch 2024a-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101.7 KiB xdg-utils noarch 1.2.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 346.3 KiB xml-common noarch 0.6.3-64.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB xorg-x11-fonts-Type1 noarch 7.5-38.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 863.3 KiB xorg-x11-proto-devel noarch 2024.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Transaction Summary: Installing: 161 packages Total size of inbound packages is 277 MiB. Need to download 277 MiB. After this operation 919 MiB will be used (install 919 MiB, remove 0 B). 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copy-jdk-configs-0:4.1-5.fc40.noarch >>> Stop pre-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch >>> Running pre-transaction scriptlet: java-21-openjdk-headless-1:21.0.3.0.9-1.f >>> Stop pre-transaction scriptlet: java-21-openjdk-headless-1:21.0.3.0.9-1.fc41 [ 2/163] Prepare transaction 100% | 1.4 KiB/s | 161.0 B | 00m00s [ 3/163] Installing nspr-0:4.35.0-26.f 100% | 155.3 MiB/s | 318.1 KiB | 00m00s [ 4/163] Installing libgfortran-0:14.1 100% | 380.5 MiB/s | 3.0 MiB | 00m00s [ 5/163] Installing xorg-x11-proto-dev 100% | 297.1 MiB/s | 1.8 MiB | 00m00s [ 6/163] Installing nss-util-0:3.101.0 100% | 201.3 MiB/s | 206.1 KiB | 00m00s [ 7/163] Installing libquadmath-0:14.1 100% | 319.5 MiB/s | 327.2 KiB | 00m00s [ 8/163] Installing libmpc-0:1.3.1-5.f 100% | 162.3 MiB/s | 166.2 KiB | 00m00s [ 9/163] Installing libpng-2:1.6.40-3. 100% | 237.4 MiB/s | 243.1 KiB | 00m00s [ 10/163] Installing fonts-filesystem-1 100% | 0.0 B/s | 788.0 B | 00m00s [ 11/163] Installing cmake-filesystem-0 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124.0 B | 00m00s [161/163] Installing annobin-plugin-gcc 100% | 73.5 MiB/s | 977.9 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch [162/163] Installing gcc-plugin-annobin 100% | 4.1 MiB/s | 58.7 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [163/163] Installing libcurl-devel-0:8. 100% | 3.2 MiB/s | 1.3 MiB | 00m00s >>> Running post-transaction scriptlet: crypto-policies-scripts-0:20240717-1.git >>> Stop post-transaction scriptlet: crypto-policies-scripts-0:20240717-1.git154 >>> Running post-transaction scriptlet: nss-0:3.101.0-3.fc41.x86_64 >>> Stop post-transaction scriptlet: nss-0:3.101.0-3.fc41.x86_64 >>> Running post-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch >>> Stop post-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch >>> Running post-transaction scriptlet: java-21-openjdk-headless-1:21.0.3.0.9-1. >>> Stop post-transaction scriptlet: java-21-openjdk-headless-1:21.0.3.0.9-1.fc4 >>> Running post-transaction scriptlet: fontconfig-0:2.15.0-6.fc41.x86_64 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-6.fc41.x86_64 >>> Running post-transaction scriptlet: java-21-openjdk-1:21.0.3.0.9-1.fc41.x86_ >>> Stop post-transaction scriptlet: java-21-openjdk-1:21.0.3.0.9-1.fc41.x86_64 >>> Running post-transaction scriptlet: java-21-openjdk-devel-1:21.0.3.0.9-1.fc4 >>> Stop post-transaction scriptlet: java-21-openjdk-devel-1:21.0.3.0.9-1.fc41.x >>> Running trigger-install 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Warning: skipped PGP checks for 161 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: build setup for R-Rhtslib-2.4.1-2.fc41.src.rpm Start: rpmbuild R-Rhtslib-2.4.1-2.fc41.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721174400 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.fBt1bL + umask 022 + cd /builddir/build/BUILD/R-Rhtslib-2.4.1-build + test -d /builddir/build/BUILD/R-Rhtslib-2.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-Rhtslib-2.4.1-build + /usr/bin/rm -rf /builddir/build/BUILD/R-Rhtslib-2.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/R-Rhtslib-2.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/R-Rhtslib-2.4.1-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.VYZA4N + umask 022 + cd /builddir/build/BUILD/R-Rhtslib-2.4.1-build + cd /builddir/build/BUILD/R-Rhtslib-2.4.1-build + rm -rf Rhtslib + /usr/bin/mkdir -p Rhtslib + cd Rhtslib + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Rhtslib_2.4.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + pushd Rhtslib ~/build/BUILD/R-Rhtslib-2.4.1-build/Rhtslib/Rhtslib ~/build/BUILD/R-Rhtslib-2.4.1-build/Rhtslib Patch #0 (R-Rhtslib-zlibbioc.patch): + echo 'Patch #0 (R-Rhtslib-zlibbioc.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 patching file DESCRIPTION patching file NAMESPACE Patch #1 (R-Rhtslib-buildroot-fix.patch): + echo 'Patch #1 (R-Rhtslib-buildroot-fix.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 patching file src/Makevars.common + popd ~/build/BUILD/R-Rhtslib-2.4.1-build/Rhtslib + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Wxqa9x + umask 022 + cd /builddir/build/BUILD/R-Rhtslib-2.4.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rhtslib + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.RFoVRO + umask 022 + cd /builddir/build/BUILD/R-Rhtslib-2.4.1-build + '[' /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/R-Rhtslib-2.4.1-build + mkdir /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rhtslib + mkdir -p /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library + R CMD INSTALL -l /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library Rhtslib * installing *source* package ‘Rhtslib’ ... ** using non-staged installation via StagedInstall field ** libs using C compiler: ‘gcc (GCC) 14.1.1 20240701 (Red Hat 14.1.1-7)’ cd "htslib-1.15.1" && make -f "Makefile.Rhtslib" make[1]: Entering directory '/builddir/build/BUILD/R-Rhtslib-2.4.1-build/Rhtslib/Rhtslib/src/htslib-1.15.1' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kfunc.o kfunc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kstring.o kstring.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bcf_sr_sort.o bcf_sr_sort.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bgzf.o bgzf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o errmod.o errmod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o faidx.o faidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o header.o header.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile.o hfile.c echo '#define HTS_VERSION_TEXT "1.15.1"' > version.h echo '#define HTS_CC "gcc"' > config_vars.h echo '#define HTS_CPPFLAGS "-I/usr/local/include -D_FILE_OFFSET_BITS=64"' >> config_vars.h echo '#define HTS_CFLAGS "-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden"' >> config_vars.h echo '#define HTS_LDFLAGS "-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -fvisibility=hidden"' >> config_vars.h echo '#define HTS_LIBS "-lz -lm -lbz2 -llzma -lcurl"' >> config_vars.h gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts.o hts.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_expr.o hts_expr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_os.o hts_os.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o md5.o md5.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o multipart.o multipart.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o probaln.o probaln.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o realn.o realn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o regidx.o regidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o region.o region.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o sam.o sam.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o synced_bcf_reader.o synced_bcf_reader.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf_sweep.o vcf_sweep.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o tbx.o tbx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o textutils.o textutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o thread_pool.o thread_pool.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf.o vcf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcfutils.o vcfutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_codecs.o cram/cram_codecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_decode.o cram/cram_decode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_encode.o cram/cram_encode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_external.o cram/cram_external.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_index.o cram/cram_index.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_io.o cram/cram_io.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_stats.o cram/cram_stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/mFILE.o cram/mFILE.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/open_trace_file.o cram/open_trace_file.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/pooled_alloc.o cram/pooled_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/string_alloc.o cram/string_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c In file included from htscodecs/htscodecs/rANS_static4x16pr.c:74: In function ‘RansEncPutSymbol’, inlined from ‘rans_compress_O1_4x16.isra.0’ at htscodecs/htscodecs/rANS_static4x16pr.c:810:2: htscodecs/htscodecs/rANS_word.h:303:28: warning: ‘ptr’ may be used uninitialized [-Wmaybe-uninitialized] 303 | *pptr = (uint8_t *)(ptr-c); | ~~~~^~~ htscodecs/htscodecs/rANS_static4x16pr.c: In function ‘rans_compress_O1_4x16.isra.0’: htscodecs/htscodecs/rANS_static4x16pr.c:793:14: note: ‘ptr’ was declared here 793 | uint8_t* ptr = out_end; | ^~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rANS_static.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rle.o htscodecs/htscodecs/rle.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/tokenise_name3.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_libcurl.o hfile_libcurl.c hfile_libcurl.c: In function ‘libcurl_open’: hfile_libcurl.c:1335:9: warning: ‘CURLINFO_CONTENT_LENGTH_DOWNLOAD’ is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 1335 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, | ^~ In file included from hfile_libcurl.c:47: /usr/include/curl/curl.h:2882:3: note: declared here 2882 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o hfile_libcurl.o ranlib libhts.a gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kfunc.pico kfunc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kstring.pico kstring.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bcf_sr_sort.pico bcf_sr_sort.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bgzf.pico bgzf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o errmod.pico errmod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o faidx.pico faidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o header.pico header.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile.pico hfile.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts.pico hts.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_expr.pico hts_expr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_os.pico hts_os.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o md5.pico md5.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o multipart.pico multipart.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o probaln.pico probaln.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o realn.pico realn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o regidx.pico regidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o region.pico region.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o sam.pico sam.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o synced_bcf_reader.pico synced_bcf_reader.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf_sweep.pico vcf_sweep.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o tbx.pico tbx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o textutils.pico textutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o thread_pool.pico thread_pool.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf.pico vcf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcfutils.pico vcfutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_codecs.pico cram/cram_codecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_decode.pico cram/cram_decode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_encode.pico cram/cram_encode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_external.pico cram/cram_external.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_index.pico cram/cram_index.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_io.pico cram/cram_io.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_stats.pico cram/cram_stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/mFILE.pico cram/mFILE.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/open_trace_file.pico cram/open_trace_file.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/pooled_alloc.pico cram/pooled_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/string_alloc.pico cram/string_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/arith_dynamic.pico htscodecs/htscodecs/arith_dynamic.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/fqzcomp_qual.pico htscodecs/htscodecs/fqzcomp_qual.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/htscodecs.pico htscodecs/htscodecs/htscodecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/pack.pico htscodecs/htscodecs/pack.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static4x16pr.pico htscodecs/htscodecs/rANS_static4x16pr.c In file included from htscodecs/htscodecs/rANS_static4x16pr.c:74: In function ‘RansEncPutSymbol’, inlined from ‘rans_compress_O1_4x16.isra.0’ at htscodecs/htscodecs/rANS_static4x16pr.c:810:2: htscodecs/htscodecs/rANS_word.h:303:28: warning: ‘ptr’ may be used uninitialized [-Wmaybe-uninitialized] 303 | *pptr = (uint8_t *)(ptr-c); | ~~~~^~~ htscodecs/htscodecs/rANS_static4x16pr.c: In function ‘rans_compress_O1_4x16.isra.0’: htscodecs/htscodecs/rANS_static4x16pr.c:793:14: note: ‘ptr’ was declared here 793 | uint8_t* ptr = out_end; | ^~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static.pico htscodecs/htscodecs/rANS_static.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rle.pico htscodecs/htscodecs/rle.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/tokenise_name3.pico htscodecs/htscodecs/tokenise_name3.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_libcurl.pico hfile_libcurl.c hfile_libcurl.c: In function ‘libcurl_open’: hfile_libcurl.c:1335:9: warning: ‘CURLINFO_CONTENT_LENGTH_DOWNLOAD’ is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 1335 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, | ^~ In file included from hfile_libcurl.c:47: /usr/include/curl/curl.h:2882:3: note: declared here 2882 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -shared -Wl,-soname,libhts.so.3 -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -fvisibility=hidden -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico htscodecs/htscodecs/arith_dynamic.pico htscodecs/htscodecs/fqzcomp_qual.pico htscodecs/htscodecs/htscodecs.pico htscodecs/htscodecs/pack.pico htscodecs/htscodecs/rANS_static4x16pr.pico htscodecs/htscodecs/rANS_static.pico htscodecs/htscodecs/rle.pico htscodecs/htscodecs/tokenise_name3.pico hfile_libcurl.pico -lz -lm -lbz2 -llzma -lcurl -lpthread ln -sf libhts.so libhts.so.3 make[1]: Leaving directory '/builddir/build/BUILD/R-Rhtslib-2.4.1-build/Rhtslib/Rhtslib/src/htslib-1.15.1' mkdir -p "/builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/include/htslib" cd "htslib-1.15.1/htslib" && cp * "/builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/include/htslib" gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"htslib-1.15.1" -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c R_init_Rhtslib.c -o R_init_Rhtslib.o mkdir -p "/builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/usrlib" cd "htslib-1.15.1" && cp libhts.so libhts.a "/builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/usrlib" cd "/builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/usrlib" && ln -s libhts.so libhts.so.2 gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o Rhtslib.so R_init_Rhtslib.o /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/usrlib/libhts.a -lcurl -lbz2 -llzma -lz -L/usr/lib64/R/lib -lR mkdir -p "/builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/testdata/tabix" cd "htslib-1.15.1/test" && (cp *.sam *.bam *.vcf *.bcf *.cram *.fa *.fa.fai *.gff *.bed "/builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/testdata" 2>/dev/null || true) && cd tabix && (cp *.sam *.bam *.vcf *.bcf *.cram *.fa *.fa.fai *.gff *.bed "/builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/testdata/tabix" 2>/dev/null || true) installing to /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘Rhtslib’ finding HTML links ... done Rhtslib-package html pkgconfig html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Rhtslib) + test -d Rhtslib/src + cd Rhtslib/src + rm -f R_init_Rhtslib.o Rhtslib.so + rm -f /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/R.css + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.4.1-2.fc41 --unique-debug-suffix -2.4.1-2.fc41.x86_64 --unique-debug-src-base R-Rhtslib-2.4.1-2.fc41.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/R-Rhtslib-2.4.1-build/Rhtslib find-debuginfo: starting Extracting debug info from 2 files DWARF-compressing 2 files sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-Rhtslib-2.4.1-2.fc41.x86_64 5051 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/usrlib/libhts.a: replacing with normalized version Scanned 38 directories and 266 files, processed 10 inodes, 1 modified (1 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/R-Rhtslib-2.4.1-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.sv7zwM + umask 022 + cd /builddir/build/BUILD/R-Rhtslib-2.4.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rhtslib + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-Rhtslib-2.4.1-2.fc41.x86_64 Provides: R(Rhtslib) = 2.4.1 R-Rhtslib = 2.4.1-2.fc41 R-Rhtslib(x86-64) = 2.4.1-2.fc41 libhts.so.3()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(ABI) = 4.4 R-core libR.so()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcurl.so.4()(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Suggests: R(BiocStyle) R(knitr) R(rmarkdown) Processing files: R-Rhtslib-devel-2.4.1-2.fc41.x86_64 Provides: R-Rhtslib-devel = 2.4.1-2.fc41 R-Rhtslib-devel(x86-64) = 2.4.1-2.fc41 R-Rhtslib-static = 2.4.1-2.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Rhtslib-debugsource-2.4.1-2.fc41.x86_64 Provides: R-Rhtslib-debugsource = 2.4.1-2.fc41 R-Rhtslib-debugsource(x86-64) = 2.4.1-2.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Rhtslib-debuginfo-2.4.1-2.fc41.x86_64 Provides: R-Rhtslib-debuginfo = 2.4.1-2.fc41 R-Rhtslib-debuginfo(x86-64) = 2.4.1-2.fc41 debuginfo(build-id) = 6a0a413688bc975dd930af99665f2d28abd361a1 debuginfo(build-id) = 95fc9edbfc3ea4e7cdee36513cc1df3103bccf16 libhts.so-2.4.1-2.fc41.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-Rhtslib-debugsource(x86-64) = 2.4.1-2.fc41 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT Wrote: /builddir/build/RPMS/R-Rhtslib-devel-2.4.1-2.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/R-Rhtslib-debugsource-2.4.1-2.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/R-Rhtslib-debuginfo-2.4.1-2.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/R-Rhtslib-2.4.1-2.fc41.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.3MWRbd + umask 022 + cd /builddir/build/BUILD/R-Rhtslib-2.4.1-build + test -d /builddir/build/BUILD/R-Rhtslib-2.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-Rhtslib-2.4.1-build + rm -rf /builddir/build/BUILD/R-Rhtslib-2.4.1-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild R-Rhtslib-2.4.1-2.fc41.src.rpm Finish: build phase for R-Rhtslib-2.4.1-2.fc41.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1721235467.918193/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/R-Rhtslib-2.4.1-2.fc41.src.rpm) Config(child) 1 minutes 15 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-Rhtslib", "epoch": null, "version": "2.4.1", "release": "2.fc41", "arch": "x86_64" }, { "name": "R-Rhtslib-debuginfo", "epoch": null, "version": "2.4.1", "release": "2.fc41", "arch": "x86_64" }, { "name": "R-Rhtslib", "epoch": null, "version": "2.4.1", "release": "2.fc41", "arch": "src" }, { "name": "R-Rhtslib-debugsource", "epoch": null, "version": "2.4.1", "release": "2.fc41", "arch": "x86_64" }, { "name": "R-Rhtslib-devel", "epoch": null, "version": "2.4.1", "release": "2.fc41", "arch": "x86_64" } ] } RPMResults finished