%global packname SummarizedExperiment %global packver 1.26.1 %global __suggests_exclude ^R\\((AnnotationDbi|BiocStyle|GenomicFeatures|HDF5Array|TxDb\\.Hsapiens\\.UCSC\\.hg19\\.knownGene|airway|annotate|hgu95av2\\.db|rhdf5)\\) Name: R-%{packname} Version: %{packver} Release: 9%{?dist} Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{packver}.tar.gz License: Artistic-2.0 URL: http://www.bioconductor.org/packages/release/bioc/html/%{packname}.html Summary: SummarizedExperiment container BuildRequires: R-devel >= 4.0.0, texlive-latex, R-methods, R-MatrixGenerics >= 1.1.3, R-GenomicRanges >= 1.41.5, R-Biobase BuildRequires: R-DelayedArray >= 0.15.10, R-utils, R-stats, R-tools, R-Matrix, R-BiocGenerics >= 0.37.0 BuildRequires: R-S4Vectors-devel >= 0.27.12, R-IRanges-devel >= 2.23.9, R-GenomeInfoDb >= 1.13.1 BuildArch: noarch %description The SummarizedExperiment container contains one or more assays, each represented by a marix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples. %prep %setup -q -c -n %{packname} %build %install mkdir -p $RPM_BUILD_ROOT%{_datadir}/R/library %{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_datadir}/R/library %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -rf $RPM_BUILD_ROOT%{_datadir}/R/library/R.css %check # Too many missing deps # %%{_bindir}/R CMD check %%{packname} %files %dir %{_datadir}/R/library/%{packname} %doc %{_datadir}/R/library/%{packname}/html %{_datadir}/R/library/%{packname}/DESCRIPTION %{_datadir}/R/library/%{packname}/INDEX %{_datadir}/R/library/%{packname}/NAMESPACE %{_datadir}/R/library/%{packname}/Meta %{_datadir}/R/library/%{packname}/R %{_datadir}/R/library/%{packname}/NEWS %{_datadir}/R/library/%{packname}/doc %{_datadir}/R/library/%{packname}/extdata %{_datadir}/R/library/%{packname}/help %{_datadir}/R/library/%{packname}/scripts %{_datadir}/R/library/%{packname}/unitTests %changelog * Wed Jul 17 2024 Fedora Release Engineering - 1.26.1-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild * Thu Apr 25 2024 Iñaki Úcar - 1.26.1-8 - R-maint-sig mass rebuild * Sat Apr 20 2024 Miroslav Suchý - 1.26.1-7 - convert license to SPDX * Mon Jan 22 2024 Fedora Release Engineering - 1.26.1-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Fri Jan 19 2024 Fedora Release Engineering - 1.26.1-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Wed Jul 19 2023 Fedora Release Engineering - 1.26.1-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Fri Apr 21 2023 Iñaki Úcar - 1.26.1-3 - R-maint-sig mass rebuild * Wed Jan 18 2023 Fedora Release Engineering - 1.26.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Sat Sep 03 2022 Iñaki Úcar - 1.26.1-1 - R 4.2.1, update to 1.26.1 * Wed Jul 20 2022 Fedora Release Engineering - 1.22.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Wed Jan 19 2022 Fedora Release Engineering - 1.22.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Wed Jul 21 2021 Fedora Release Engineering - 1.22.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Wed Jun 16 2021 Tom Callaway - 1.22.0-1 - update to 1.22.0 - Rebuilt for R 4.1.0 * Thu Feb 4 2021 Tom Callaway - 1.20.0-1 - update to 1.20.0 * Mon Jan 25 2021 Fedora Release Engineering - 1.18.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Mon Jul 27 2020 Fedora Release Engineering - 1.18.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Mon Jun 8 2020 Tom Callaway - 1.18.1-1 - update to 1.18.1 - rebuild for R 4 * Tue Jan 28 2020 Fedora Release Engineering - 1.16.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Thu Nov 21 2019 Elliott Sales de Andrade - 1.16.0-2 - Exclude Suggests for unavailable packages * Wed Nov 6 2019 Tom Callaway - 1.16.0-1 - update to 1.16.0 * Mon Aug 12 2019 Elliott Sales de Andrade - 1.10.1-5 - Remove explicit dependencies provided by automatic dependency generator * Wed Jul 24 2019 Fedora Release Engineering - 1.10.1-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild * Thu Jan 31 2019 Fedora Release Engineering - 1.10.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Thu Jul 12 2018 Fedora Release Engineering - 1.10.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild * Thu May 17 2018 Tom Callaway - 1.10.1-1 - update to 1.10.1 * Fri Mar 23 2018 Tom Callaway - 1.8.1-1 - update to 1.8.1 * Wed Feb 07 2018 Fedora Release Engineering - 1.6.3-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild * Wed Jul 26 2017 Fedora Release Engineering - 1.6.3-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild * Wed May 31 2017 Tom Callaway - 1.6.3-1 - initial package