Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1d0' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7791560-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64


Version: 0.73
PID: 6588
Logging PID: 6589
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 7791560,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'ac50afd4de554bca5b35a7cc879e258eccc429fc',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'mmseq',
 'package_version': '1.0.11-21',
 'project_dirname': 'openblas-0.3.23',
 'project_name': 'openblas-0.3.23',
 'project_owner': 'psimovec',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-rawhide-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/',
            'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch',
            'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}],
 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/msuchy',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'submitter': 'https://src.fedoraproject.org/user/msuchy',
 'tags': [],
 'task_id': '7791560-fedora-rawhide-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq /var/lib/copr-rpmbuild/workspace/workdir-rkaknd35/mmseq --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq', '/var/lib/copr-rpmbuild/workspace/workdir-rkaknd35/mmseq', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-rkaknd35/mmseq'...

Running: git checkout ac50afd4de554bca5b35a7cc879e258eccc429fc --

cmd: ['git', 'checkout', 'ac50afd4de554bca5b35a7cc879e258eccc429fc', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-rkaknd35/mmseq
rc: 0
stdout: 
stderr: Note: switching to 'ac50afd4de554bca5b35a7cc879e258eccc429fc'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at ac50afd automatic import of mmseq

Running: copr-distgit-client sources

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-rkaknd35/mmseq
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading 1.0.11.zip
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o 1.0.11.zip --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/mmseq/1.0.11.zip/md5/c727916d339d7a2111523800b621ce2b/1.0.11.zip
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 2781k  100 2781k    0     0  25.4M      0 --:--:-- --:--:-- --:--:-- 25.6M
INFO: Reading stdout from command: md5sum 1.0.11.zip

/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-rkaknd35/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-rkaknd35/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1721949972.550840 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-rkaknd35/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-rkaknd35/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1721949972.550840 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-rkaknd35/mmseq/mmseq.spec)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.6
INFO: Mock Version: 5.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1721949972.550840/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1721949972.550840/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/d903fea45c2958106d99bef1c8291bfeea045ccae665697691985f90c47daac7/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/d903fea45c2958106d99bef1c8291bfeea045ccae665697691985f90c47daac7/merged) with podman image umount
INFO: Package manager dnf5 detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf5 tooling
Updating and loading repositories:
 Additional repo http_kojipkgs_fedorapr 100% |  47.1 MiB/s |  14.1 MiB |  00m00s
 Copr repository                        100% |  16.0 MiB/s |   3.6 MiB |  00m00s
 fedora                                 100% |  13.1 MiB/s |  21.4 MiB |  00m02s
Repositories loaded.
Nothing to do.
Package "dnf5-5.2.5.0-1.fc41.x86_64" is already installed.
Package "dnf5-plugins-5.2.5.0-1.fc41.x86_64" is already installed.

Finish(bootstrap): installing dnf5 tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1721949972.550840/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.92-5.fc41.x86_64
  rpm-sequoia-1.7.0-2.fc41.x86_64
  dnf5-5.2.5.0-1.fc41.x86_64
  dnf5-plugins-5.2.5.0-1.fc41.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% |  25.6 MiB/s |  21.4 MiB |  00m01s
 Copr repository                        100% |  25.5 MiB/s |   3.6 MiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% |  49.6 MiB/s |  14.1 MiB |  00m00s
Repositories loaded.
Package                            Arch   Version                    Repository                                                         Size
Installing group/module packages:
 bash                              x86_64 5.2.26-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.2 MiB
 bzip2                             x86_64 1.0.8-19.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  95.7 KiB
 coreutils                         x86_64 9.5-7.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.6 MiB
 cpio                              x86_64 2.15-2.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 diffutils                         x86_64 3.10-7.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 fedora-release-common             noarch 41-0.16                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.2 KiB
 findutils                         x86_64 1:4.10.0-4.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 gawk                              x86_64 5.3.0-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 glibc-minimal-langpack            x86_64 2.39.9000-35.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 grep                              x86_64 3.11-9.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 gzip                              x86_64 1.13-2.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 389.0 KiB
 info                              x86_64 7.1-3.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 361.8 KiB
 patch                             x86_64 2.7.6-25.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 266.7 KiB
 redhat-rpm-config                 noarch 293-1.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183.5 KiB
 rpm-build                         x86_64 4.19.92-5.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 194.2 KiB
 sed                               x86_64 4.9-3.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.5 KiB
 shadow-utils                      x86_64 2:4.15.1-9.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.1 MiB
 tar                               x86_64 2:1.35-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.9 MiB
 unzip                             x86_64 6.0-64.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 386.8 KiB
 util-linux                        x86_64 2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.7 MiB
 which                             x86_64 2.21-42.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.2 KiB
 xz                                x86_64 1:5.6.2-2.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
Installing dependencies:
 add-determinism                   x86_64 0.3.5-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 alternatives                      x86_64 1.28-3.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  66.3 KiB
 ansible-srpm-macros               noarch 1-16.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.7 KiB
 audit-libs                        x86_64 4.0.1-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 327.3 KiB
 authselect                        x86_64 1.5.0-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 153.5 KiB
 authselect-libs                   x86_64 1.5.0-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 818.3 KiB
 basesystem                        noarch 11-21.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 binutils                          x86_64 2.42.50-20.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  27.3 MiB
 build-reproducibility-srpm-macros noarch 0.3.5-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 735.0   B
 bzip2-libs                        x86_64 1.0.8-19.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.7 KiB
 ca-certificates                   noarch 2024.2.68_v8.0.302-3.fc41  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 coreutils-common                  x86_64 9.5-7.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.2 MiB
 cracklib                          x86_64 2.9.11-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 238.9 KiB
 crypto-policies                   noarch 20240717-2.git154fd4e.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 130.4 KiB
 curl                              x86_64 8.9.0-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 792.4 KiB
 cyrus-sasl-lib                    x86_64 2.1.28-27.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 debugedit                         x86_64 5.0-17.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 199.3 KiB
 dwz                               x86_64 0.15-7.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 290.9 KiB
 ed                                x86_64 1.20.2-2.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146.9 KiB
 efi-srpm-macros                   noarch 5-12.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.1 KiB
 elfutils                          x86_64 0.191-8.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.6 MiB
 elfutils-debuginfod-client        x86_64 0.191-8.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  64.9 KiB
 elfutils-default-yama-scope       noarch 0.191-8.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 KiB
 elfutils-libelf                   x86_64 0.191-8.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 elfutils-libs                     x86_64 0.191-8.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 646.2 KiB
 fedora-gpg-keys                   noarch 41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 124.7 KiB
 fedora-release                    noarch 41-0.16                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 fedora-release-identity-basic     noarch 41-0.16                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0   B
 fedora-repos                      noarch 41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.9 KiB
 fedora-repos-rawhide              noarch 41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 file                              x86_64 5.45-7.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.5 KiB
 file-libs                         x86_64 5.45-7.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.9 MiB
 filesystem                        x86_64 3.18-23.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.0   B
 fonts-srpm-macros                 noarch 1:2.0.5-17.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.8 KiB
 forge-srpm-macros                 noarch 0.3.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.0 KiB
 fpc-srpm-macros                   noarch 1.3-13.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0   B
 gdb-minimal                       x86_64 14.2-15.fc41               copr_base                                                      12.7 MiB
 gdbm                              x86_64 1:1.23-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 460.9 KiB
 gdbm-libs                         x86_64 1:1.23-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121.9 KiB
 ghc-srpm-macros                   noarch 1.9.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 747.0   B
 glibc                             x86_64 2.39.9000-35.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.6 MiB
 glibc-common                      x86_64 2.39.9000-35.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 glibc-gconv-extra                 x86_64 2.39.9000-35.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.8 MiB
 gmp                               x86_64 1:6.3.0-2.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 811.4 KiB
 gnat-srpm-macros                  noarch 6-6.fc41                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 KiB
 go-srpm-macros                    noarch 3.6.0-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  60.8 KiB
 jansson                           x86_64 2.13.1-10.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  88.3 KiB
 kernel-srpm-macros                noarch 1.0-24.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 keyutils-libs                     x86_64 1.6.3-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  54.4 KiB
 krb5-libs                         x86_64 1.21.3-2.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 libacl                            x86_64 2.3.2-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.0 KiB
 libarchive                        x86_64 3.7.4-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 922.6 KiB
 libattr                           x86_64 2.5.2-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.5 KiB
 libblkid                          x86_64 2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 258.5 KiB
 libbrotli                         x86_64 1.1.0-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 837.6 KiB
 libcap                            x86_64 2.70-4.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 220.2 KiB
 libcap-ng                         x86_64 0.8.5-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  69.2 KiB
 libcom_err                        x86_64 1.47.1-3.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.2 KiB
 libcurl                           x86_64 8.9.0-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 818.1 KiB
 libeconf                          x86_64 0.6.2-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  58.0 KiB
 libevent                          x86_64 2.1.12-14.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 895.7 KiB
 libfdisk                          x86_64 2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 362.9 KiB
 libffi                            x86_64 3.4.6-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  86.4 KiB
 libgcc                            x86_64 14.1.1-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 274.6 KiB
 libgomp                           x86_64 14.1.1-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 523.4 KiB
 libidn2                           x86_64 2.3.7-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 329.1 KiB
 libmount                          x86_64 2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 351.8 KiB
 libnghttp2                        x86_64 1.62.1-2.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 166.1 KiB
 libnsl2                           x86_64 2.0.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.9 KiB
 libpkgconf                        x86_64 2.1.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  74.2 KiB
 libpsl                            x86_64 0.21.5-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.5 KiB
 libpwquality                      x86_64 1.4.5-11.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 417.8 KiB
 libselinux                        x86_64 3.7-5.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 181.0 KiB
 libsemanage                       x86_64 3.7-2.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 293.5 KiB
 libsepol                          x86_64 3.7-2.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 817.8 KiB
 libsmartcols                      x86_64 2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 180.4 KiB
 libssh                            x86_64 0.10.6-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 513.3 KiB
 libssh-config                     noarch 0.10.6-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.0   B
 libstdc++                         x86_64 14.1.1-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.8 MiB
 libtasn1                          x86_64 4.19.0-9.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 175.7 KiB
 libtirpc                          x86_64 1.3.5-0.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 202.7 KiB
 libtool-ltdl                      x86_64 2.4.7-12.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  66.2 KiB
 libunistring                      x86_64 1.1-8.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 libutempter                       x86_64 1.2.1-15.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.7 KiB
 libuuid                           x86_64 2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.5 KiB
 libverto                          x86_64 0.3.2-9.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.5 KiB
 libxcrypt                         x86_64 4.4.36-7.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 266.8 KiB
 libxml2                           x86_64 2.12.8-2.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 libzstd                           x86_64 1.5.6-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 795.9 KiB
 lua-libs                          x86_64 5.4.6-6.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 285.0 KiB
 lua-srpm-macros                   noarch 1-14.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 KiB
 lz4-libs                          x86_64 1.10.0-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 145.5 KiB
 mpfr                              x86_64 4.2.1-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 832.1 KiB
 ncurses-base                      noarch 6.5-2.20240629.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.3 KiB
 ncurses-libs                      x86_64 6.5-2.20240629.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 975.2 KiB
 ocaml-srpm-macros                 noarch 10-3.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 openblas-srpm-macros              noarch 2-18.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0   B
 openldap                          x86_64 2.6.8-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 644.2 KiB
 openssl-libs                      x86_64 1:3.2.2-5.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.8 MiB
 p11-kit                           x86_64 0.25.5-3.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 MiB
 p11-kit-trust                     x86_64 0.25.5-3.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 391.4 KiB
 package-notes-srpm-macros         noarch 0.5-12.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 KiB
 pam                               x86_64 1.6.1-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 pam-libs                          x86_64 1.6.1-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 135.0 KiB
 pcre2                             x86_64 10.44-1.fc41.1             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 653.5 KiB
 pcre2-syntax                      noarch 10.44-1.fc41.1             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB
 perl-srpm-macros                  noarch 1-56.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0   B
 pkgconf                           x86_64 2.1.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  82.8 KiB
 pkgconf-m4                        noarch 2.1.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.9 KiB
 pkgconf-pkg-config                x86_64 2.1.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 989.0   B
 popt                              x86_64 1.19-7.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.9 KiB
 publicsuffix-list-dafsa           noarch 20240107-4.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.5 KiB
 pyproject-srpm-macros             noarch 1.14.0-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 python-srpm-macros                noarch 3.13-3.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  51.0 KiB
 qt5-srpm-macros                   noarch 5.15.14-3.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0   B
 qt6-srpm-macros                   noarch 6.7.2-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0   B
 readline                          x86_64 8.2-9.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 489.2 KiB
 rpm                               x86_64 4.19.92-5.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.0 MiB
 rpm-build-libs                    x86_64 4.19.92-5.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 206.7 KiB
 rpm-libs                          x86_64 4.19.92-5.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 717.9 KiB
 rpm-sequoia                       x86_64 1.7.0-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.4 MiB
 rust-srpm-macros                  noarch 26.3-1.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.8 KiB
 setup                             noarch 2.15.0-5.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB
 sqlite-libs                       x86_64 3.46.0-3.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 systemd-libs                      x86_64 256.4-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.0 MiB
 util-linux-core                   x86_64 2.40.2-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 xxhash-libs                       x86_64 0.8.2-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  88.5 KiB
 xz-libs                           x86_64 1:5.6.2-2.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 214.4 KiB
 zig-srpm-macros                   noarch 1-3.fc41                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 KiB
 zip                               x86_64 3.0-41.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 703.2 KiB
 zlib-ng-compat                    x86_64 2.1.7-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134.0 KiB
 zstd                              x86_64 1.5.6-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
Installing groups:
 Buildsystem building group                                                                                                                 

Transaction Summary:
 Installing:      154 packages

Total size of inbound packages is 53 MiB. Need to download 53 MiB.
After this operation 179 MiB will be used (install 179 MiB, remove 0 B).
[  1/154] bzip2-0:1.0.8-19.fc41.x86_64  100% | 656.5 KiB/s |  52.5 KiB |  00m00s
[  2/154] coreutils-0:9.5-7.fc41.x86_64 100% |  10.8 MiB/s |   1.1 MiB |  00m00s
[  3/154] bash-0:5.2.26-4.fc41.x86_64   100% |  14.8 MiB/s |   1.8 MiB |  00m00s
[  4/154] cpio-0:2.15-2.fc41.x86_64     100% |   7.0 MiB/s | 285.2 KiB |  00m00s
[  5/154] diffutils-0:3.10-7.fc41.x86_6 100% |  15.5 MiB/s | 396.9 KiB |  00m00s
[  6/154] fedora-release-common-0:41-0. 100% |   1.3 MiB/s |  22.5 KiB |  00m00s
[  7/154] gawk-0:5.3.0-4.fc41.x86_64    100% |  28.6 MiB/s |   1.1 MiB |  00m00s
[  8/154] glibc-minimal-langpack-0:2.39 100% |   4.8 MiB/s | 123.0 KiB |  00m00s
[  9/154] findutils-1:4.10.0-4.fc41.x86 100% |  11.5 MiB/s | 539.8 KiB |  00m00s
[ 10/154] gzip-0:1.13-2.fc41.x86_64     100% |   8.0 MiB/s | 164.1 KiB |  00m00s
[ 11/154] grep-0:3.11-9.fc41.x86_64     100% |  13.5 MiB/s | 289.7 KiB |  00m00s
[ 12/154] info-0:7.1-3.fc41.x86_64      100% |   9.9 MiB/s | 182.5 KiB |  00m00s
[ 13/154] patch-0:2.7.6-25.fc41.x86_64  100% |   7.5 MiB/s | 131.0 KiB |  00m00s
[ 14/154] redhat-rpm-config-0:293-1.fc4 100% |   4.3 MiB/s |  75.5 KiB |  00m00s
[ 15/154] rpm-build-0:4.19.92-5.fc41.x8 100% |   4.4 MiB/s |  75.8 KiB |  00m00s
[ 16/154] sed-0:4.9-3.fc41.x86_64       100% |  13.7 MiB/s | 309.3 KiB |  00m00s
[ 17/154] unzip-0:6.0-64.fc41.x86_64    100% |   9.5 MiB/s | 184.9 KiB |  00m00s
[ 18/154] tar-2:1.35-4.fc41.x86_64      100% |  19.4 MiB/s | 852.1 KiB |  00m00s
[ 19/154] shadow-utils-2:4.15.1-9.fc41. 100% |  27.4 MiB/s |   1.3 MiB |  00m00s
[ 20/154] which-0:2.21-42.fc41.x86_64   100% |   2.0 MiB/s |  41.6 KiB |  00m00s
[ 21/154] util-linux-0:2.40.2-4.fc41.x8 100% |  25.2 MiB/s |   1.2 MiB |  00m00s
[ 22/154] xz-1:5.6.2-2.fc41.x86_64      100% |   9.1 MiB/s | 457.8 KiB |  00m00s
[ 23/154] xz-libs-1:5.6.2-2.fc41.x86_64 100% |   6.1 MiB/s | 111.8 KiB |  00m00s
[ 24/154] audit-libs-0:4.0.1-4.fc41.x86 100% |   7.2 MiB/s | 125.5 KiB |  00m00s
[ 25/154] authselect-libs-0:1.5.0-7.fc4 100% |  10.5 MiB/s | 204.9 KiB |  00m00s
[ 26/154] libblkid-0:2.40.2-4.fc41.x86_ 100% |   6.1 MiB/s | 124.7 KiB |  00m00s
[ 27/154] glibc-0:2.39.9000-35.fc41.x86 100% |  31.4 MiB/s |   2.2 MiB |  00m00s
[ 28/154] libcap-ng-0:0.8.5-3.fc41.x86_ 100% |   2.0 MiB/s |  32.6 KiB |  00m00s
[ 29/154] libfdisk-0:2.40.2-4.fc41.x86_ 100% |   8.7 MiB/s | 159.8 KiB |  00m00s
[ 30/154] libmount-0:2.40.2-4.fc41.x86_ 100% |   8.9 MiB/s | 155.5 KiB |  00m00s
[ 31/154] libselinux-0:3.7-5.fc41.x86_6 100% |   4.8 MiB/s |  87.8 KiB |  00m00s
[ 32/154] libsmartcols-0:2.40.2-4.fc41. 100% |   4.8 MiB/s |  83.7 KiB |  00m00s
[ 33/154] libutempter-0:1.2.1-15.fc41.x 100% |   1.5 MiB/s |  26.6 KiB |  00m00s
[ 34/154] libuuid-0:2.40.2-4.fc41.x86_6 100% |   1.8 MiB/s |  29.1 KiB |  00m00s
[ 35/154] pam-0:1.6.1-4.fc41.x86_64     100% |  23.0 MiB/s | 518.3 KiB |  00m00s
[ 36/154] ncurses-libs-0:6.5-2.20240629 100% |  12.5 MiB/s | 334.0 KiB |  00m00s
[ 37/154] pam-libs-0:1.6.1-4.fc41.x86_6 100% |   3.3 MiB/s |  57.2 KiB |  00m00s
[ 38/154] readline-0:8.2-9.fc41.x86_64  100% |  11.0 MiB/s | 213.4 KiB |  00m00s
[ 39/154] systemd-libs-0:256.4-1.fc41.x 100% |  20.4 MiB/s | 731.0 KiB |  00m00s
[ 40/154] zlib-ng-compat-0:2.1.7-2.fc41 100% |   4.5 MiB/s |  77.8 KiB |  00m00s
[ 41/154] util-linux-core-0:2.40.2-4.fc 100% |  10.8 MiB/s | 521.5 KiB |  00m00s
[ 42/154] libacl-0:2.3.2-2.fc41.x86_64  100% |   1.5 MiB/s |  24.5 KiB |  00m00s
[ 43/154] bzip2-libs-0:1.0.8-19.fc41.x8 100% |   2.2 MiB/s |  41.1 KiB |  00m00s
[ 44/154] libcap-0:2.70-4.fc41.x86_64   100% |   5.0 MiB/s |  86.7 KiB |  00m00s
[ 45/154] libattr-0:2.5.2-4.fc41.x86_64 100% |   1.0 MiB/s |  18.2 KiB |  00m00s
[ 46/154] libgcc-0:14.1.1-7.fc41.x86_64 100% |   7.1 MiB/s | 130.4 KiB |  00m00s
[ 47/154] libeconf-0:0.6.2-3.fc41.x86_6 100% |   1.8 MiB/s |  32.2 KiB |  00m00s
[ 48/154] libsemanage-0:3.7-2.fc41.x86_ 100% |   6.3 MiB/s | 116.3 KiB |  00m00s
[ 49/154] libxcrypt-0:4.4.36-7.fc41.x86 100% |   6.4 MiB/s | 118.5 KiB |  00m00s
[ 50/154] setup-0:2.15.0-5.fc41.noarch  100% |   8.0 MiB/s | 148.3 KiB |  00m00s
[ 51/154] debugedit-0:5.0-17.fc41.x86_6 100% |   4.1 MiB/s |  80.1 KiB |  00m00s
[ 52/154] elfutils-0:0.191-8.fc41.x86_6 100% |  22.3 MiB/s | 524.4 KiB |  00m00s
[ 53/154] elfutils-libelf-0:0.191-8.fc4 100% |  10.7 MiB/s | 207.6 KiB |  00m00s
[ 54/154] file-0:5.45-7.fc41.x86_64     100% |   2.8 MiB/s |  49.1 KiB |  00m00s
[ 55/154] libarchive-0:3.7.4-3.fc41.x86 100% |  16.0 MiB/s | 409.2 KiB |  00m00s
[ 56/154] pkgconf-pkg-config-0:2.1.1-2. 100% | 556.3 KiB/s |  10.0 KiB |  00m00s
[ 57/154] popt-0:1.19-7.fc41.x86_64     100% |   3.4 MiB/s |  59.3 KiB |  00m00s
[ 58/154] rpm-0:4.19.92-5.fc41.x86_64   100% |  19.0 MiB/s | 524.5 KiB |  00m00s
[ 59/154] rpm-build-libs-0:4.19.92-5.fc 100% |   4.9 MiB/s |  99.4 KiB |  00m00s
[ 60/154] rpm-libs-0:4.19.92-5.fc41.x86 100% |  15.1 MiB/s | 309.7 KiB |  00m00s
[ 61/154] zstd-0:1.5.6-2.fc41.x86_64    100% |  17.4 MiB/s | 481.5 KiB |  00m00s
[ 62/154] curl-0:8.9.0-1.fc41.x86_64    100% |  14.6 MiB/s | 313.9 KiB |  00m00s
[ 63/154] ansible-srpm-macros-0:1-16.fc 100% |   1.1 MiB/s |  20.8 KiB |  00m00s
[ 64/154] binutils-0:2.42.50-20.fc41.x8 100% |  34.9 MiB/s |   6.4 MiB |  00m00s
[ 65/154] build-reproducibility-srpm-ma 100% | 498.7 KiB/s |  10.5 KiB |  00m00s
[ 66/154] glibc-gconv-extra-0:2.39.9000 100% |  30.6 MiB/s |   1.7 MiB |  00m00s
[ 67/154] efi-srpm-macros-0:5-12.fc41.n 100% |   1.4 MiB/s |  22.4 KiB |  00m00s
[ 68/154] dwz-0:0.15-7.fc41.x86_64      100% |   7.5 MiB/s | 138.0 KiB |  00m00s
[ 69/154] fonts-srpm-macros-1:2.0.5-17. 100% |   1.4 MiB/s |  27.0 KiB |  00m00s
[ 70/154] fpc-srpm-macros-0:1.3-13.fc41 100% | 497.6 KiB/s |   8.0 KiB |  00m00s
[ 71/154] forge-srpm-macros-0:0.3.1-2.f 100% |   1.1 MiB/s |  19.5 KiB |  00m00s
[ 72/154] ghc-srpm-macros-0:1.9.1-2.fc4 100% | 566.0 KiB/s |   9.1 KiB |  00m00s
[ 73/154] go-srpm-macros-0:3.6.0-3.fc41 100% |   1.6 MiB/s |  28.0 KiB |  00m00s
[ 74/154] gnat-srpm-macros-0:6-6.fc41.n 100% | 526.6 KiB/s |   9.0 KiB |  00m00s
[ 75/154] kernel-srpm-macros-0:1.0-24.f 100% | 580.5 KiB/s |   9.9 KiB |  00m00s
[ 76/154] lua-srpm-macros-0:1-14.fc41.n 100% | 554.9 KiB/s |   8.9 KiB |  00m00s
[ 77/154] ocaml-srpm-macros-0:10-3.fc41 100% | 541.1 KiB/s |   9.2 KiB |  00m00s
[ 78/154] openblas-srpm-macros-0:2-18.f 100% | 482.2 KiB/s |   7.7 KiB |  00m00s
[ 79/154] package-notes-srpm-macros-0:0 100% | 614.3 KiB/s |   9.8 KiB |  00m00s
[ 80/154] perl-srpm-macros-0:1-56.fc41. 100% | 532.0 KiB/s |   8.5 KiB |  00m00s
[ 81/154] pyproject-srpm-macros-0:1.14. 100% | 789.8 KiB/s |  13.4 KiB |  00m00s
[ 82/154] python-srpm-macros-0:3.13-3.f 100% |   1.4 MiB/s |  23.7 KiB |  00m00s
[ 83/154] qt5-srpm-macros-0:5.15.14-3.f 100% | 560.8 KiB/s |   9.0 KiB |  00m00s
[ 84/154] qt6-srpm-macros-0:6.7.2-3.fc4 100% | 570.4 KiB/s |   9.1 KiB |  00m00s
[ 85/154] rust-srpm-macros-0:26.3-1.fc4 100% | 781.5 KiB/s |  12.5 KiB |  00m00s
[ 86/154] zig-srpm-macros-0:1-3.fc41.no 100% | 507.7 KiB/s |   8.1 KiB |  00m00s
[ 87/154] zip-0:3.0-41.fc41.x86_64      100% |  12.9 MiB/s | 264.8 KiB |  00m00s
[ 88/154] pkgconf-m4-0:2.1.1-2.fc41.noa 100% | 834.4 KiB/s |  14.2 KiB |  00m00s
[ 89/154] pkgconf-0:2.1.1-2.fc41.x86_64 100% |   2.4 MiB/s |  43.9 KiB |  00m00s
[ 90/154] libpkgconf-0:2.1.1-2.fc41.x86 100% |   2.2 MiB/s |  38.2 KiB |  00m00s
[ 91/154] ed-0:1.20.2-2.fc41.x86_64     100% |   4.4 MiB/s |  81.8 KiB |  00m00s
[ 92/154] authselect-0:1.5.0-7.fc41.x86 100% |   7.3 MiB/s | 141.2 KiB |  00m00s
[ 93/154] gdbm-1:1.23-7.fc41.x86_64     100% |   8.0 MiB/s | 147.2 KiB |  00m00s
[ 94/154] gdbm-libs-1:1.23-7.fc41.x86_6 100% |   3.2 MiB/s |  56.3 KiB |  00m00s
[ 95/154] libnsl2-0:2.0.1-2.fc41.x86_64 100% |   1.7 MiB/s |  29.6 KiB |  00m00s
[ 96/154] libpwquality-0:1.4.5-11.fc41. 100% |   5.9 MiB/s | 108.2 KiB |  00m00s
[ 97/154] libtirpc-0:1.3.5-0.fc41.x86_6 100% |   5.1 MiB/s |  94.2 KiB |  00m00s
[ 98/154] crypto-policies-0:20240717-2. 100% |   3.0 MiB/s |  65.5 KiB |  00m00s
[ 99/154] ca-certificates-0:2024.2.68_v 100% |  23.6 MiB/s | 868.2 KiB |  00m00s
[100/154] ncurses-base-0:6.5-2.20240629 100% |   3.7 MiB/s |  63.8 KiB |  00m00s
[101/154] krb5-libs-0:1.21.3-2.fc41.x86 100% |  24.5 MiB/s | 753.3 KiB |  00m00s
[102/154] openssl-libs-1:3.2.2-5.fc41.x 100% |  30.4 MiB/s |   2.3 MiB |  00m00s
[103/154] libcom_err-0:1.47.1-3.fc41.x8 100% |   1.4 MiB/s |  26.4 KiB |  00m00s
[104/154] libsepol-0:3.7-2.fc41.x86_64  100% |  15.2 MiB/s | 342.2 KiB |  00m00s
[105/154] cracklib-0:2.9.11-6.fc41.x86_ 100% |   4.0 MiB/s |  81.7 KiB |  00m00s
[106/154] pcre2-0:10.44-1.fc41.1.x86_64 100% |  10.8 MiB/s | 243.1 KiB |  00m00s
[107/154] libzstd-0:1.5.6-2.fc41.x86_64 100% |   9.5 MiB/s | 310.3 KiB |  00m00s
[108/154] libxml2-0:2.12.8-2.fc41.x86_6 100% |  14.0 MiB/s | 687.3 KiB |  00m00s
[109/154] lz4-libs-0:1.10.0-1.fc41.x86_ 100% |   1.5 MiB/s |  70.7 KiB |  00m00s
[110/154] keyutils-libs-0:1.6.3-4.fc41. 100% |   1.8 MiB/s |  31.6 KiB |  00m00s
[111/154] libverto-0:0.3.2-9.fc41.x86_6 100% |   1.2 MiB/s |  20.7 KiB |  00m00s
[112/154] basesystem-0:11-21.fc41.noarc 100% | 460.8 KiB/s |   7.4 KiB |  00m00s
[113/154] glibc-common-0:2.39.9000-35.f 100% |  14.7 MiB/s | 405.7 KiB |  00m00s
[114/154] mpfr-0:4.2.1-5.fc41.x86_64    100% |  11.3 MiB/s | 346.3 KiB |  00m00s
[115/154] filesystem-0:3.18-23.fc41.x86 100% |  31.5 MiB/s |   1.1 MiB |  00m00s
[116/154] file-libs-0:5.45-7.fc41.x86_6 100% |  20.7 MiB/s | 762.0 KiB |  00m00s
[117/154] fedora-repos-0:41-0.2.noarch  100% | 583.1 KiB/s |   9.3 KiB |  00m00s
[118/154] elfutils-debuginfod-client-0: 100% |   2.1 MiB/s |  37.2 KiB |  00m00s
[119/154] elfutils-libs-0:0.191-8.fc41. 100% |  13.2 MiB/s | 257.5 KiB |  00m00s
[120/154] p11-kit-0:0.25.5-3.fc41.x86_6 100% |  18.6 MiB/s | 477.3 KiB |  00m00s
[121/154] libstdc++-0:14.1.1-7.fc41.x86 100% |  19.6 MiB/s | 885.1 KiB |  00m00s
[122/154] p11-kit-trust-0:0.25.5-3.fc41 100% |   7.2 MiB/s | 132.1 KiB |  00m00s
[123/154] alternatives-0:1.28-3.fc41.x8 100% |   2.4 MiB/s |  41.0 KiB |  00m00s
[124/154] coreutils-common-0:9.5-7.fc41 100% |  25.6 MiB/s |   2.1 MiB |  00m00s
[125/154] add-determinism-0:0.3.5-1.fc4 100% |  20.0 MiB/s | 860.8 KiB |  00m00s
[126/154] jansson-0:2.13.1-10.fc41.x86_ 100% |   2.4 MiB/s |  44.4 KiB |  00m00s
[127/154] lua-libs-0:5.4.6-6.fc41.x86_6 100% |   7.2 MiB/s | 132.0 KiB |  00m00s
[128/154] sqlite-libs-0:3.46.0-3.fc41.x 100% |  24.0 MiB/s | 712.4 KiB |  00m00s
[129/154] rpm-sequoia-0:1.7.0-2.fc41.x8 100% |  21.3 MiB/s | 892.5 KiB |  00m00s
[130/154] libgomp-0:14.1.1-7.fc41.x86_6 100% |  13.2 MiB/s | 351.1 KiB |  00m00s
[131/154] pcre2-syntax-0:10.44-1.fc41.1 100% |   8.1 MiB/s | 149.9 KiB |  00m00s
[132/154] libtasn1-0:4.19.0-9.fc41.x86_ 100% |   4.3 MiB/s |  74.2 KiB |  00m00s
[133/154] libffi-0:3.4.6-2.fc41.x86_64  100% |   2.3 MiB/s |  40.2 KiB |  00m00s
[134/154] fedora-gpg-keys-0:41-0.2.noar 100% |   6.6 MiB/s | 121.8 KiB |  00m00s
[135/154] fedora-repos-rawhide-0:41-0.2 100% | 523.8 KiB/s |   8.9 KiB |  00m00s
[136/154] elfutils-default-yama-scope-0 100% | 723.8 KiB/s |  12.3 KiB |  00m00s
[137/154] fedora-release-0:41-0.16.noar 100% | 687.8 KiB/s |  11.7 KiB |  00m00s
[138/154] gmp-1:6.3.0-2.fc41.x86_64     100% |  12.4 MiB/s | 318.0 KiB |  00m00s
[139/154] fedora-release-identity-basic 100% | 780.2 KiB/s |  12.5 KiB |  00m00s
[140/154] libcurl-0:8.9.0-1.fc41.x86_64 100% |  17.6 MiB/s | 361.4 KiB |  00m00s
[141/154] xxhash-libs-0:0.8.2-3.fc41.x8 100% |   2.3 MiB/s |  37.1 KiB |  00m00s
[142/154] libbrotli-0:1.1.0-5.fc41.x86_ 100% |  15.8 MiB/s | 340.5 KiB |  00m00s
[143/154] libidn2-0:2.3.7-2.fc41.x86_64 100% |   5.8 MiB/s | 112.6 KiB |  00m00s
[144/154] libnghttp2-0:1.62.1-2.fc41.x8 100% |   4.4 MiB/s |  76.6 KiB |  00m00s
[145/154] libpsl-0:0.21.5-4.fc41.x86_64 100% |   3.7 MiB/s |  64.1 KiB |  00m00s
[146/154] libssh-0:0.10.6-6.fc41.x86_64 100% |  10.9 MiB/s | 211.5 KiB |  00m00s
[147/154] gdb-minimal-0:14.2-15.fc41.x8 100% |  36.4 MiB/s |   4.3 MiB |  00m00s
[148/154] openldap-0:2.6.8-5.fc41.x86_6 100% |   8.6 MiB/s | 255.6 KiB |  00m00s
[149/154] libtool-ltdl-0:2.4.7-12.fc41. 100% |   2.0 MiB/s |  35.6 KiB |  00m00s
[150/154] cyrus-sasl-lib-0:2.1.28-27.fc 100% |  24.3 MiB/s | 794.9 KiB |  00m00s
[151/154] libevent-0:2.1.12-14.fc41.x86 100% |   9.7 MiB/s | 257.5 KiB |  00m00s
[152/154] libssh-config-0:0.10.6-6.fc41 100% | 537.5 KiB/s |   9.1 KiB |  00m00s
[153/154] publicsuffix-list-dafsa-0:202 100% |   3.3 MiB/s |  58.3 KiB |  00m00s
[154/154] libunistring-0:1.1-8.fc41.x86 100% |  16.1 MiB/s | 544.8 KiB |  00m00s
--------------------------------------------------------------------------------
[154/154] Total                         100% |  37.3 MiB/s |  52.6 MiB |  00m01s
Running transaction
[  1/156] Verify package files          100% | 789.0   B/s | 154.0   B |  00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64
>>> Stop pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64
[  2/156] Prepare transaction           100% |   1.9 KiB/s | 154.0   B |  00m00s
[  3/156] Installing libgcc-0:14.1.1-7. 100% | 134.9 MiB/s | 276.3 KiB |  00m00s
>>> Running post-install scriptlet: libgcc-0:14.1.1-7.fc41.x86_64
>>> Stop post-install scriptlet: libgcc-0:14.1.1-7.fc41.x86_64
[  4/156] Installing publicsuffix-list- 100% |  66.7 MiB/s |  68.3 KiB |  00m00s
[  5/156] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  6/156] Installing fedora-release-ide 100% |   0.0   B/s | 952.0   B |  00m00s
[  7/156] Installing fedora-gpg-keys-0: 100% |  20.7 MiB/s | 169.7 KiB |  00m00s
[  8/156] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[  9/156] Installing fedora-repos-0:41- 100% |   5.6 MiB/s |   5.7 KiB |  00m00s
[ 10/156] Installing fedora-release-com 100% |  11.5 MiB/s |  23.5 KiB |  00m00s
[ 11/156] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 12/156] Installing setup-0:2.15.0-5.f 100% |  50.6 MiB/s | 726.1 KiB |  00m00s
>>> Running post-install scriptlet: setup-0:2.15.0-5.fc41.noarch
>>> Stop post-install scriptlet: setup-0:2.15.0-5.fc41.noarch
[ 13/156] Installing filesystem-0:3.18- 100% |   1.7 MiB/s | 212.5 KiB |  00m00s
[ 14/156] Installing basesystem-0:11-21 100% |   0.0   B/s | 124.0   B |  00m00s
[ 15/156] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB |  00m00s
[ 16/156] Installing coreutils-common-0 100% | 243.3 MiB/s |  11.2 MiB |  00m00s
[ 17/156] Installing ncurses-base-0:6.5 100% |  38.2 MiB/s | 351.7 KiB |  00m00s
[ 18/156] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 19/156] Installing ncurses-libs-0:6.5 100% | 137.0 MiB/s | 981.8 KiB |  00m00s
>>> Running pre-install scriptlet: glibc-0:2.39.9000-35.fc41.x86_64
>>> Stop pre-install scriptlet: glibc-0:2.39.9000-35.fc41.x86_64
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[ 20/156] Installing glibc-0:2.39.9000- 100% | 135.9 MiB/s |   6.7 MiB |  00m00s
>>> Running post-install scriptlet: glibc-0:2.39.9000-35.fc41.x86_64
>>> Stop post-install scriptlet: glibc-0:2.39.9000-35.fc41.x86_64
[ 21/156] Installing bash-0:5.2.26-4.fc 100% | 263.5 MiB/s |   8.2 MiB |  00m00s
>>> Running post-install scriptlet: bash-0:5.2.26-4.fc41.x86_64
>>> Stop post-install scriptlet: bash-0:5.2.26-4.fc41.x86_64
[ 22/156] Installing glibc-common-0:2.3 100% | 129.4 MiB/s |   1.0 MiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[ 23/156] Installing glibc-gconv-extra- 100% | 127.3 MiB/s |   7.9 MiB |  00m00s
>>> Running post-install scriptlet: glibc-gconv-extra-0:2.39.9000-35.fc41.x86_64
>>> Stop post-install scriptlet: glibc-gconv-extra-0:2.39.9000-35.fc41.x86_64
[ 24/156] Installing zlib-ng-compat-0:2 100% | 131.7 MiB/s | 134.8 KiB |  00m00s
[ 25/156] Installing xz-libs-1:5.6.2-2. 100% | 105.2 MiB/s | 215.5 KiB |  00m00s
[ 26/156] Installing bzip2-libs-0:1.0.8 100% |  79.9 MiB/s |  81.8 KiB |  00m00s
[ 27/156] Installing libuuid-0:2.40.2-4 100% |  37.7 MiB/s |  38.6 KiB |  00m00s
[ 28/156] Installing readline-0:8.2-9.f 100% | 159.9 MiB/s | 491.3 KiB |  00m00s
[ 29/156] Installing popt-0:1.19-7.fc41 100% |  28.0 MiB/s | 143.5 KiB |  00m00s
[ 30/156] Installing libblkid-0:2.40.2- 100% | 126.7 MiB/s | 259.5 KiB |  00m00s
[ 31/156] Installing libattr-0:2.5.2-4. 100% |  28.8 MiB/s |  29.5 KiB |  00m00s
[ 32/156] Installing libacl-0:2.3.2-2.f 100% |  39.8 MiB/s |  40.7 KiB |  00m00s
[ 33/156] Installing libxcrypt-0:4.4.36 100% | 131.6 MiB/s | 269.5 KiB |  00m00s
[ 34/156] Installing libzstd-0:1.5.6-2. 100% | 259.5 MiB/s | 797.2 KiB |  00m00s
[ 35/156] Installing elfutils-libelf-0: 100% | 292.3 MiB/s |   1.2 MiB |  00m00s
[ 36/156] Installing libstdc++-0:14.1.1 100% | 251.9 MiB/s |   2.8 MiB |  00m00s
[ 37/156] Installing gmp-1:6.3.0-2.fc41 100% | 264.9 MiB/s | 813.7 KiB |  00m00s
[ 38/156] Installing libeconf-0:0.6.2-3 100% |  58.3 MiB/s |  59.7 KiB |  00m00s
[ 39/156] Installing gdbm-libs-1:1.23-7 100% | 120.7 MiB/s | 123.6 KiB |  00m00s
[ 40/156] Installing mpfr-0:4.2.1-5.fc4 100% | 203.5 MiB/s | 833.7 KiB |  00m00s
[ 41/156] Installing gawk-0:5.3.0-4.fc4 100% | 173.2 MiB/s |   1.7 MiB |  00m00s
[ 42/156] Installing dwz-0:0.15-7.fc41. 100% | 142.7 MiB/s | 292.3 KiB |  00m00s
[ 43/156] Installing unzip-0:6.0-64.fc4 100% | 127.0 MiB/s | 390.3 KiB |  00m00s
[ 44/156] Installing file-libs-0:5.45-7 100% | 451.5 MiB/s |   9.9 MiB |  00m00s
[ 45/156] Installing file-0:5.45-7.fc41 100% |   7.9 MiB/s | 105.0 KiB |  00m00s
>>> Running pre-install scriptlet: crypto-policies-0:20240717-2.git154fd4e.fc41.
>>> Stop pre-install scriptlet: crypto-policies-0:20240717-2.git154fd4e.fc41.noa
[ 46/156] Installing crypto-policies-0: 100% |  15.2 MiB/s | 156.1 KiB |  00m00s
>>> Running post-install scriptlet: crypto-policies-0:20240717-2.git154fd4e.fc41
>>> Stop post-install scriptlet: crypto-policies-0:20240717-2.git154fd4e.fc41.no
[ 47/156] Installing libcap-ng-0:0.8.5- 100% |  69.4 MiB/s |  71.0 KiB |  00m00s
[ 48/156] Installing audit-libs-0:4.0.1 100% | 160.9 MiB/s | 329.5 KiB |  00m00s
[ 49/156] Installing pam-libs-0:1.6.1-4 100% |  67.0 MiB/s | 137.3 KiB |  00m00s
[ 50/156] Installing libcap-0:2.70-4.fc 100% |  73.3 MiB/s | 225.2 KiB |  00m00s
[ 51/156] Installing systemd-libs-0:256 100% | 226.0 MiB/s |   2.0 MiB |  00m00s
[ 52/156] Installing libsmartcols-0:2.4 100% | 177.1 MiB/s | 181.4 KiB |  00m00s
[ 53/156] Installing libcom_err-0:1.47. 100% |  66.7 MiB/s |  68.3 KiB |  00m00s
[ 54/156] Installing libsepol-0:3.7-2.f 100% | 266.5 MiB/s | 818.8 KiB |  00m00s
[ 55/156] Installing pcre2-0:10.44-1.fc 100% | 213.2 MiB/s | 654.9 KiB |  00m00s
[ 56/156] Installing libselinux-0:3.7-5 100% | 178.0 MiB/s | 182.3 KiB |  00m00s
[ 57/156] Installing sed-0:4.9-3.fc41.x 100% | 121.3 MiB/s | 869.7 KiB |  00m00s
[ 58/156] Installing grep-0:3.11-9.fc41 100% | 125.4 MiB/s |   1.0 MiB |  00m00s
[ 59/156] Installing findutils-1:4.10.0 100% | 185.8 MiB/s |   1.9 MiB |  00m00s
[ 60/156] Installing xz-1:5.6.2-2.fc41. 100% | 133.9 MiB/s |   1.2 MiB |  00m00s
[ 61/156] Installing libmount-0:2.40.2- 100% | 172.3 MiB/s | 352.9 KiB |  00m00s
[ 62/156] Installing lz4-libs-0:1.10.0- 100% | 143.1 MiB/s | 146.6 KiB |  00m00s
[ 63/156] Installing alternatives-0:1.2 100% |  66.3 MiB/s |  67.9 KiB |  00m00s
[ 64/156] Installing lua-libs-0:5.4.6-6 100% | 139.8 MiB/s | 286.2 KiB |  00m00s
[ 65/156] Installing libtasn1-0:4.19.0- 100% | 173.3 MiB/s | 177.5 KiB |  00m00s
[ 66/156] Installing libunistring-0:1.1 100% | 288.5 MiB/s |   1.7 MiB |  00m00s
[ 67/156] Installing libidn2-0:2.3.7-2. 100% |  81.8 MiB/s | 335.1 KiB |  00m00s
[ 68/156] Installing libpsl-0:0.21.5-4. 100% |  79.7 MiB/s |  81.7 KiB |  00m00s
[ 69/156] Installing zstd-0:1.5.6-2.fc4 100% | 281.9 MiB/s |   1.7 MiB |  00m00s
[ 70/156] Installing util-linux-core-0: 100% | 135.0 MiB/s |   1.5 MiB |  00m00s
[ 71/156] Installing tar-2:1.35-4.fc41. 100% | 227.6 MiB/s |   3.0 MiB |  00m00s
[ 72/156] Installing libsemanage-0:3.7- 100% |  96.1 MiB/s | 295.2 KiB |  00m00s
[ 73/156] Installing shadow-utils-2:4.1 100% |  80.7 MiB/s |   4.2 MiB |  00m00s
>>> Running pre-install scriptlet: libutempter-0:1.2.1-15.fc41.x86_64
>>> Stop pre-install scriptlet: libutempter-0:1.2.1-15.fc41.x86_64
[ 74/156] Installing libutempter-0:1.2. 100% |  29.2 MiB/s |  59.7 KiB |  00m00s
[ 75/156] Installing zip-0:3.0-41.fc41. 100% | 172.6 MiB/s | 707.1 KiB |  00m00s
[ 76/156] Installing gdbm-1:1.23-7.fc41 100% | 113.7 MiB/s | 465.8 KiB |  00m00s
[ 77/156] Installing cyrus-sasl-lib-0:2 100% | 230.6 MiB/s |   2.3 MiB |  00m00s
[ 78/156] Installing libfdisk-0:2.40.2- 100% | 177.8 MiB/s | 364.1 KiB |  00m00s
[ 79/156] Installing bzip2-0:1.0.8-19.f 100% |  48.9 MiB/s | 100.2 KiB |  00m00s
[ 80/156] Installing libxml2-0:2.12.8-2 100% | 244.6 MiB/s |   1.7 MiB |  00m00s
[ 81/156] Installing add-determinism-0: 100% | 285.3 MiB/s |   2.3 MiB |  00m00s
[ 82/156] Installing build-reproducibil 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 83/156] Installing sqlite-libs-0:3.46 100% | 238.2 MiB/s |   1.4 MiB |  00m00s
[ 84/156] Installing ed-0:1.20.2-2.fc41 100% | 145.7 MiB/s | 149.2 KiB |  00m00s
[ 85/156] Installing patch-0:2.7.6-25.f 100% | 131.0 MiB/s | 268.2 KiB |  00m00s
[ 86/156] Installing elfutils-default-y 100% | 170.2 KiB/s |   2.0 KiB |  00m00s
>>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.n
>>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.noar
[ 87/156] Installing elfutils-libs-0:0. 100% | 158.2 MiB/s | 648.0 KiB |  00m00s
[ 88/156] Installing cpio-0:2.15-2.fc41 100% | 157.1 MiB/s |   1.1 MiB |  00m00s
[ 89/156] Installing diffutils-0:3.10-7 100% | 176.7 MiB/s |   1.6 MiB |  00m00s
[ 90/156] Installing libpkgconf-0:2.1.1 100% |  73.6 MiB/s |  75.3 KiB |  00m00s
[ 91/156] Installing pkgconf-0:2.1.1-2. 100% |  41.7 MiB/s |  85.4 KiB |  00m00s
[ 92/156] Installing keyutils-libs-0:1. 100% |  54.5 MiB/s |  55.8 KiB |  00m00s
[ 93/156] Installing libverto-0:0.3.2-9 100% |  30.5 MiB/s |  31.3 KiB |  00m00s
[ 94/156] Installing jansson-0:2.13.1-1 100% |  87.6 MiB/s |  89.7 KiB |  00m00s
[ 95/156] Installing libgomp-0:14.1.1-7 100% | 256.3 MiB/s | 524.9 KiB |  00m00s
[ 96/156] Installing libffi-0:3.4.6-2.f 100% |  85.7 MiB/s |  87.8 KiB |  00m00s
[ 97/156] Installing p11-kit-0:0.25.5-3 100% | 157.7 MiB/s |   2.2 MiB |  00m00s
[ 98/156] Installing p11-kit-trust-0:0. 100% |  25.6 MiB/s | 393.1 KiB |  00m00s
>>> Running post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.x86_64
>>> Stop post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.x86_64
[ 99/156] Installing openssl-libs-1:3.2 100% | 279.5 MiB/s |   7.8 MiB |  00m00s
[100/156] Installing coreutils-0:9.5-7. 100% | 143.8 MiB/s |   5.6 MiB |  00m00s
>>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.n
>>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar
[101/156] Installing ca-certificates-0: 100% |   2.5 MiB/s |   2.4 MiB |  00m01s
>>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.
>>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noa
[102/156] Installing krb5-libs-0:1.21.3 100% | 191.6 MiB/s |   2.3 MiB |  00m00s
[103/156] Installing libarchive-0:3.7.4 100% | 225.7 MiB/s | 924.6 KiB |  00m00s
[104/156] Installing libtirpc-0:1.3.5-0 100% |  99.8 MiB/s | 204.5 KiB |  00m00s
[105/156] Installing gzip-0:1.13-2.fc41 100% | 128.4 MiB/s | 394.6 KiB |  00m00s
[106/156] Installing authselect-libs-0: 100% |  90.4 MiB/s | 833.2 KiB |  00m00s
[107/156] Installing cracklib-0:2.9.11- 100% |  40.7 MiB/s | 250.3 KiB |  00m00s
[108/156] Installing libpwquality-0:1.4 100% |  52.5 MiB/s | 430.1 KiB |  00m00s
[109/156] Installing libnsl2-0:2.0.1-2. 100% |  57.7 MiB/s |  59.1 KiB |  00m00s
[110/156] Installing pam-0:1.6.1-4.fc41 100% |  82.7 MiB/s |   1.8 MiB |  00m00s
[111/156] Installing libssh-0:0.10.6-6. 100% | 167.8 MiB/s | 515.4 KiB |  00m00s
[112/156] Installing rpm-sequoia-0:1.7. 100% | 295.9 MiB/s |   2.4 MiB |  00m00s
[113/156] Installing rpm-libs-0:4.19.92 100% | 234.2 MiB/s | 719.4 KiB |  00m00s
[114/156] Installing rpm-build-libs-0:4 100% | 202.6 MiB/s | 207.5 KiB |  00m00s
[115/156] Installing libevent-0:2.1.12- 100% | 219.6 MiB/s | 899.5 KiB |  00m00s
[116/156] Installing xxhash-libs-0:0.8. 100% |  87.8 MiB/s |  89.9 KiB |  00m00s
[117/156] Installing libbrotli-0:1.1.0- 100% | 205.0 MiB/s | 839.9 KiB |  00m00s
[118/156] Installing libnghttp2-0:1.62. 100% | 163.2 MiB/s | 167.1 KiB |  00m00s
[119/156] Installing libtool-ltdl-0:2.4 100% |  65.7 MiB/s |  67.3 KiB |  00m00s
[120/156] Installing openldap-0:2.6.8-5 100% | 158.2 MiB/s | 648.0 KiB |  00m00s
[121/156] Installing libcurl-0:8.9.0-1. 100% | 266.7 MiB/s | 819.2 KiB |  00m00s
[122/156] Installing elfutils-debuginfo 100% |  32.7 MiB/s |  66.9 KiB |  00m00s
[123/156] Installing binutils-0:2.42.50 100% | 273.4 MiB/s |  27.3 MiB |  00m00s
>>> Running post-install scriptlet: binutils-0:2.42.50-20.fc41.x86_64
>>> Stop post-install scriptlet: binutils-0:2.42.50-20.fc41.x86_64
[124/156] Installing elfutils-0:0.191-8 100% | 232.7 MiB/s |   2.6 MiB |  00m00s
[125/156] Installing gdb-minimal-0:14.2 100% | 318.7 MiB/s |  12.7 MiB |  00m00s
[126/156] Installing debugedit-0:5.0-17 100% |  98.6 MiB/s | 202.0 KiB |  00m00s
[127/156] Installing curl-0:8.9.0-1.fc4 100% |  37.0 MiB/s | 794.9 KiB |  00m00s
>>> Running pre-install scriptlet: rpm-0:4.19.92-5.fc41.x86_64
>>> Stop pre-install scriptlet: rpm-0:4.19.92-5.fc41.x86_64
[128/156] Installing rpm-0:4.19.92-5.fc 100% |  92.3 MiB/s |   2.5 MiB |  00m00s
[129/156] Installing efi-srpm-macros-0: 100% |  40.2 MiB/s |  41.2 KiB |  00m00s
[130/156] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[131/156] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[132/156] Installing pkgconf-m4-0:2.1.1 100% |   0.0   B/s |  14.3 KiB |  00m00s
[133/156] Installing pkgconf-pkg-config 100% |   0.0   B/s |   1.8 KiB |  00m00s
[134/156] Installing rust-srpm-macros-0 100% |   0.0   B/s |   5.6 KiB |  00m00s
[135/156] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[136/156] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[137/156] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[138/156] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[139/156] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[140/156] Installing ocaml-srpm-macros- 100% |   2.1 MiB/s |   2.2 KiB |  00m00s
[141/156] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[142/156] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[143/156] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[144/156] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[145/156] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[146/156] Installing fonts-srpm-macros- 100% |  55.7 MiB/s |  57.0 KiB |  00m00s
[147/156] Installing forge-srpm-macros- 100% |  39.4 MiB/s |  40.3 KiB |  00m00s
[148/156] Installing go-srpm-macros-0:3 100% |  60.5 MiB/s |  62.0 KiB |  00m00s
[149/156] Installing python-srpm-macros 100% |  50.9 MiB/s |  52.2 KiB |  00m00s
[150/156] Installing redhat-rpm-config- 100% |  61.9 MiB/s | 190.1 KiB |  00m00s
[151/156] Installing rpm-build-0:4.19.9 100% |  49.5 MiB/s | 202.9 KiB |  00m00s
[152/156] Installing pyproject-srpm-mac 100% |   2.4 MiB/s |   2.5 KiB |  00m00s
[153/156] Installing util-linux-0:2.40. 100% |  93.7 MiB/s |   3.7 MiB |  00m00s
>>> Running post-install scriptlet: util-linux-0:2.40.2-4.fc41.x86_64
>>> Stop post-install scriptlet: util-linux-0:2.40.2-4.fc41.x86_64
[154/156] Installing authselect-0:1.5.0 100% |  51.4 MiB/s | 157.9 KiB |  00m00s
[155/156] Installing which-0:2.21-42.fc 100% |  80.5 MiB/s |  82.4 KiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[156/156] Installing info-0:7.1-3.fc41. 100% | 295.2 KiB/s | 362.2 KiB |  00m01s
>>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64
>>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64
>>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f
>>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41
>>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64
>>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64
>>> Running post-transaction scriptlet: rpm-0:4.19.92-5.fc41.x86_64
>>> Stop post-transaction scriptlet: rpm-0:4.19.92-5.fc41.x86_64
>>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-35.fc41.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-35.fc41.x86_64
>>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64
>>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64
Complete!
Warning: skipped PGP checks for 154 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.3.5-1.fc41.x86_64
alternatives-1.28-3.fc41.x86_64
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.0.1-4.fc41.x86_64
authselect-1.5.0-7.fc41.x86_64
authselect-libs-1.5.0-7.fc41.x86_64
basesystem-11-21.fc41.noarch
bash-5.2.26-4.fc41.x86_64
binutils-2.42.50-20.fc41.x86_64
build-reproducibility-srpm-macros-0.3.5-1.fc41.noarch
bzip2-1.0.8-19.fc41.x86_64
bzip2-libs-1.0.8-19.fc41.x86_64
ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch
coreutils-9.5-7.fc41.x86_64
coreutils-common-9.5-7.fc41.x86_64
cpio-2.15-2.fc41.x86_64
cracklib-2.9.11-6.fc41.x86_64
crypto-policies-20240717-2.git154fd4e.fc41.noarch
curl-8.9.0-1.fc41.x86_64
cyrus-sasl-lib-2.1.28-27.fc41.x86_64
debugedit-5.0-17.fc41.x86_64
diffutils-3.10-7.fc41.x86_64
dwz-0.15-7.fc41.x86_64
ed-1.20.2-2.fc41.x86_64
efi-srpm-macros-5-12.fc41.noarch
elfutils-0.191-8.fc41.x86_64
elfutils-debuginfod-client-0.191-8.fc41.x86_64
elfutils-default-yama-scope-0.191-8.fc41.noarch
elfutils-libelf-0.191-8.fc41.x86_64
elfutils-libs-0.191-8.fc41.x86_64
fedora-gpg-keys-41-0.2.noarch
fedora-release-41-0.16.noarch
fedora-release-common-41-0.16.noarch
fedora-release-identity-basic-41-0.16.noarch
fedora-repos-41-0.2.noarch
fedora-repos-rawhide-41-0.2.noarch
file-5.45-7.fc41.x86_64
file-libs-5.45-7.fc41.x86_64
filesystem-3.18-23.fc41.x86_64
findutils-4.10.0-4.fc41.x86_64
fonts-srpm-macros-2.0.5-17.fc41.noarch
forge-srpm-macros-0.3.1-2.fc41.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.x86_64
gdb-minimal-14.2-15.fc41.x86_64
gdbm-1.23-7.fc41.x86_64
gdbm-libs-1.23-7.fc41.x86_64
ghc-srpm-macros-1.9.1-2.fc41.noarch
glibc-2.39.9000-35.fc41.x86_64
glibc-common-2.39.9000-35.fc41.x86_64
glibc-gconv-extra-2.39.9000-35.fc41.x86_64
glibc-minimal-langpack-2.39.9000-35.fc41.x86_64
gmp-6.3.0-2.fc41.x86_64
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.6.0-3.fc41.noarch
grep-3.11-9.fc41.x86_64
gzip-1.13-2.fc41.x86_64
info-7.1-3.fc41.x86_64
jansson-2.13.1-10.fc41.x86_64
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc41.x86_64
krb5-libs-1.21.3-2.fc41.x86_64
libacl-2.3.2-2.fc41.x86_64
libarchive-3.7.4-3.fc41.x86_64
libattr-2.5.2-4.fc41.x86_64
libblkid-2.40.2-4.fc41.x86_64
libbrotli-1.1.0-5.fc41.x86_64
libcap-2.70-4.fc41.x86_64
libcap-ng-0.8.5-3.fc41.x86_64
libcom_err-1.47.1-3.fc41.x86_64
libcurl-8.9.0-1.fc41.x86_64
libeconf-0.6.2-3.fc41.x86_64
libevent-2.1.12-14.fc41.x86_64
libfdisk-2.40.2-4.fc41.x86_64
libffi-3.4.6-2.fc41.x86_64
libgcc-14.1.1-7.fc41.x86_64
libgomp-14.1.1-7.fc41.x86_64
libidn2-2.3.7-2.fc41.x86_64
libmount-2.40.2-4.fc41.x86_64
libnghttp2-1.62.1-2.fc41.x86_64
libnsl2-2.0.1-2.fc41.x86_64
libpkgconf-2.1.1-2.fc41.x86_64
libpsl-0.21.5-4.fc41.x86_64
libpwquality-1.4.5-11.fc41.x86_64
libselinux-3.7-5.fc41.x86_64
libsemanage-3.7-2.fc41.x86_64
libsepol-3.7-2.fc41.x86_64
libsmartcols-2.40.2-4.fc41.x86_64
libssh-0.10.6-6.fc41.x86_64
libssh-config-0.10.6-6.fc41.noarch
libstdc++-14.1.1-7.fc41.x86_64
libtasn1-4.19.0-9.fc41.x86_64
libtirpc-1.3.5-0.fc41.x86_64
libtool-ltdl-2.4.7-12.fc41.x86_64
libunistring-1.1-8.fc41.x86_64
libutempter-1.2.1-15.fc41.x86_64
libuuid-2.40.2-4.fc41.x86_64
libverto-0.3.2-9.fc41.x86_64
libxcrypt-4.4.36-7.fc41.x86_64
libxml2-2.12.8-2.fc41.x86_64
libzstd-1.5.6-2.fc41.x86_64
lua-libs-5.4.6-6.fc41.x86_64
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc41.x86_64
mpfr-4.2.1-5.fc41.x86_64
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.x86_64
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.8-5.fc41.x86_64
openssl-libs-3.2.2-5.fc41.x86_64
p11-kit-0.25.5-3.fc41.x86_64
p11-kit-trust-0.25.5-3.fc41.x86_64
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.6.1-4.fc41.x86_64
pam-libs-1.6.1-4.fc41.x86_64
patch-2.7.6-25.fc41.x86_64
pcre2-10.44-1.fc41.1.x86_64
pcre2-syntax-10.44-1.fc41.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.1.1-2.fc41.x86_64
pkgconf-m4-2.1.1-2.fc41.noarch
pkgconf-pkg-config-2.1.1-2.fc41.x86_64
popt-1.19-7.fc41.x86_64
publicsuffix-list-dafsa-20240107-4.fc41.noarch
pyproject-srpm-macros-1.14.0-1.fc41.noarch
python-srpm-macros-3.13-3.fc41.noarch
qt5-srpm-macros-5.15.14-3.fc41.noarch
qt6-srpm-macros-6.7.2-3.fc41.noarch
readline-8.2-9.fc41.x86_64
redhat-rpm-config-293-1.fc41.noarch
rpm-4.19.92-5.fc41.x86_64
rpm-build-4.19.92-5.fc41.x86_64
rpm-build-libs-4.19.92-5.fc41.x86_64
rpm-libs-4.19.92-5.fc41.x86_64
rpm-sequoia-1.7.0-2.fc41.x86_64
rust-srpm-macros-26.3-1.fc41.noarch
sed-4.9-3.fc41.x86_64
setup-2.15.0-5.fc41.noarch
shadow-utils-4.15.1-9.fc41.x86_64
sqlite-libs-3.46.0-3.fc41.x86_64
systemd-libs-256.4-1.fc41.x86_64
tar-1.35-4.fc41.x86_64
unzip-6.0-64.fc41.x86_64
util-linux-2.40.2-4.fc41.x86_64
util-linux-core-2.40.2-4.fc41.x86_64
which-2.21-42.fc41.x86_64
xxhash-libs-0.8.2-3.fc41.x86_64
xz-5.6.2-2.fc41.x86_64
xz-libs-5.6.2-2.fc41.x86_64
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-41.fc41.x86_64
zlib-ng-compat-2.1.7-2.fc41.x86_64
zstd-1.5.6-2.fc41.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1721952000
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-21.fc41.src.rpm
Finish: rpmbuild -bs
cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-x86_64-1721949972.550840/root/var/log’: No such file or directory
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1721949972.550840/root/var/log/dnf5.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-rkaknd35/mmseq/mmseq.spec) Config(child) 0 minutes 41 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-21.fc41.src.rpm)  Config(fedora-rawhide-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1721949972.550840/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1721949972.550840/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1721949972.550840/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.92-5.fc41.x86_64
  rpm-sequoia-1.7.0-2.fc41.x86_64
  dnf5-5.2.5.0-1.fc41.x86_64
  dnf5-plugins-5.2.5.0-1.fc41.x86_64
Finish: chroot init
Start: build phase for mmseq-1.0.11-21.fc41.src.rpm
Start: build setup for mmseq-1.0.11-21.fc41.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1721952000
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-21.fc41.src.rpm
Updating and loading repositories:
 Additional repo http_kojipkgs_fedorapr 100% |  75.1 KiB/s |   3.8 KiB |  00m00s
 Copr repository                        100% |  30.1 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% | 908.5 KiB/s |  20.9 KiB |  00m00s
Repositories loaded.
Package                      Arch   Version              Repository                                                         Size
Installing:
 armadillo-devel             x86_64 12.8.1-3.fc41        copr_base                                                       7.3 MiB
 boost-devel                 x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 143.0 MiB
 flexiblas-devel             x86_64 3.4.4-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.7 MiB
 gcc-c++                     x86_64 14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  38.1 MiB
 gsl-devel                   x86_64 2.7.1-9.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 htslib-devel                x86_64 1.15.1-6.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 411.0 KiB
 make                        x86_64 1:4.4.1-8.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 perl-generators             noarch 1.16-6.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  21.8 KiB
 zlib-ng-compat-devel        x86_64 2.1.7-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.8 KiB
Installing dependencies:
 SuperLU                     x86_64 6.0.1-6.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 490.3 KiB
 SuperLU-devel               x86_64 6.0.1-6.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 102.2 KiB
 annobin-docs                noarch 12.62-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  96.5 KiB
 annobin-plugin-gcc          x86_64 12.62-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 977.3 KiB
 armadillo                   x86_64 12.8.1-3.fc41        copr_base                                                      90.3 KiB
 arpack                      x86_64 3.9.1-4.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 650.0 KiB
 arpack-devel                x86_64 3.9.1-4.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  69.1 KiB
 autoconf                    noarch 2.72-3.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.8 MiB
 automake                    noarch 1.16.5-17.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 boost                       x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 KiB
 boost-atomic                x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  21.0 KiB
 boost-chrono                x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.6 KiB
 boost-container             x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  65.5 KiB
 boost-context               x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  16.5 KiB
 boost-contract              x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.2 KiB
 boost-coroutine             x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  21.2 KiB
 boost-date-time             x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  16.3 KiB
 boost-fiber                 x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  82.8 KiB
 boost-filesystem            x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 147.6 KiB
 boost-graph                 x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 346.4 KiB
 boost-iostreams             x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  94.8 KiB
 boost-json                  x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 329.2 KiB
 boost-locale                x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 606.2 KiB
 boost-log                   x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 boost-math                  x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 647.1 KiB
 boost-nowide                x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  24.9 KiB
 boost-numpy3                x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.6 KiB
 boost-program-options       x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 272.7 KiB
 boost-python3               x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 250.5 KiB
 boost-random                x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.7 KiB
 boost-regex                 x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 271.0 KiB
 boost-serialization         x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 437.7 KiB
 boost-stacktrace            x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  64.1 KiB
 boost-system                x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  16.3 KiB
 boost-test                  x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 643.0 KiB
 boost-thread                x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.8 KiB
 boost-timer                 x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  25.1 KiB
 boost-type_erasure          x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  58.2 KiB
 boost-wave                  x86_64 1.83.0-8.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 635.9 KiB
 cmake-filesystem            x86_64 3.28.3-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 cpp                         x86_64 14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.0 MiB
 emacs-filesystem            noarch 1:30.0-3.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 expat                       x86_64 2.6.2-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 284.8 KiB
 flexiblas                   x86_64 3.4.4-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  48.5 KiB
 flexiblas-netlib            x86_64 3.4.4-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  10.4 MiB
 flexiblas-netlib64          x86_64 3.4.4-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  10.5 MiB
 flexiblas-openblas-openmp   x86_64 3.4.4-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.3 KiB
 flexiblas-openblas-openmp64 x86_64 3.4.4-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.3 KiB
 gcc                         x86_64 14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 104.1 MiB
 gcc-gfortran                x86_64 14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.2 MiB
 gcc-plugin-annobin          x86_64 14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.1 KiB
 glibc-devel                 x86_64 2.39.9000-35.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.8 KiB
 glibc-headers-x86           noarch 2.39.9000-35.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 MiB
 groff-base                  x86_64 1.23.0-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.8 MiB
 gsl                         x86_64 2.7.1-9.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.3 MiB
 hdf5                        x86_64 1.12.1-20.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.4 MiB
 hdf5-devel                  x86_64 1.12.1-20.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.9 MiB
 htslib                      x86_64 1.15.1-6.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 kernel-headers              x86_64 6.10.0-64.fc41.1     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.3 MiB
 libaec                      x86_64 1.1.2-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  98.1 KiB
 libaec-devel                x86_64 1.1.2-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.9 KiB
 libb2                       x86_64 0.98.1-12.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  42.2 KiB
 libgfortran                 x86_64 14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.0 MiB
 libicu                      x86_64 74.2-2.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  34.9 MiB
 libicu-devel                x86_64 74.2-2.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.6 MiB
 libmpc                      x86_64 1.3.1-6.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 164.7 KiB
 libquadmath                 x86_64 14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 325.9 KiB
 libquadmath-devel           x86_64 14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  21.8 KiB
 libstdc++-devel             x86_64 14.1.1-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.4 MiB
 libxcrypt-devel             x86_64 4.4.36-7.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  30.3 KiB
 m4                          x86_64 1.4.19-10.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 592.9 KiB
 metis                       x86_64 5.1.0.3-6.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 985.2 KiB
 mpdecimal                   x86_64 2.5.1-16.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 204.9 KiB
 ncurses                     x86_64 6.5-2.20240629.fc41  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 627.3 KiB
 openblas                    x86_64 0.3.26-5.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  96.0 KiB
 openblas-openmp             x86_64 0.3.26-5.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.4 MiB
 openblas-openmp64           x86_64 0.3.26-5.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.5 MiB
 perl-AutoLoader             noarch 5.74-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  20.5 KiB
 perl-B                      x86_64 1.89-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 498.0 KiB
 perl-Carp                   noarch 1.54-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  46.6 KiB
 perl-Class-Struct           noarch 0.68-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  25.4 KiB
 perl-Data-Dumper            x86_64 2.189-512.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 111.7 KiB
 perl-Digest                 noarch 1.20-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.3 KiB
 perl-Digest-MD5             x86_64 2.59-5.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  59.8 KiB
 perl-DynaLoader             x86_64 1.56-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  32.1 KiB
 perl-Encode                 x86_64 4:3.21-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.7 MiB
 perl-Errno                  x86_64 1.38-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.4 KiB
 perl-Exporter               noarch 5.78-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  54.3 KiB
 perl-Fcntl                  x86_64 1.18-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  49.0 KiB
 perl-Fedora-VSP             noarch 0.001-35.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.7 KiB
 perl-File-Basename          noarch 2.86-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  14.0 KiB
 perl-File-Compare           noarch 1.100.800-511.fc41   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.6 KiB
 perl-File-Copy              noarch 2.41-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.6 KiB
 perl-File-Find              noarch 1.44-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  41.9 KiB
 perl-File-Path              noarch 2.18-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  63.5 KiB
 perl-File-Temp              noarch 1:0.231.100-511.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 162.3 KiB
 perl-File-stat              noarch 1.14-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.5 KiB
 perl-FileHandle             noarch 2.05-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.3 KiB
 perl-Getopt-Long            noarch 1:2.58-2.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.5 KiB
 perl-Getopt-Std             noarch 1.14-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.2 KiB
 perl-HTTP-Tiny              noarch 0.088-512.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 152.2 KiB
 perl-IO                     x86_64 1.55-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 151.1 KiB
 perl-IO-Socket-IP           noarch 0.42-512.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  98.7 KiB
 perl-IO-Socket-SSL          noarch 2.088-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 701.1 KiB
 perl-IPC-Open3              noarch 1.22-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.5 KiB
 perl-MIME-Base64            x86_64 3.16-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  46.1 KiB
 perl-Mozilla-CA             noarch 20240313-2.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.5 KiB
 perl-Net-SSLeay             x86_64 1.94-7.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 MiB
 perl-POSIX                  x86_64 2.20-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235.1 KiB
 perl-PathTools              x86_64 3.91-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 180.0 KiB
 perl-Pod-Escapes            noarch 1:1.07-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  24.9 KiB
 perl-Pod-Perldoc            noarch 3.28.01-512.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 163.7 KiB
 perl-Pod-Simple             noarch 1:3.45-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 560.9 KiB
 perl-Pod-Usage              noarch 4:2.03-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  84.8 KiB
 perl-Scalar-List-Utils      x86_64 5:1.63-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 145.6 KiB
 perl-SelectSaver            noarch 1.02-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 perl-Socket                 x86_64 4:2.038-511.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 124.0 KiB
 perl-Storable               x86_64 1:3.32-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 232.4 KiB
 perl-Symbol                 noarch 1.09-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.8 KiB
 perl-Term-ANSIColor         noarch 5.01-512.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  97.5 KiB
 perl-Term-Cap               noarch 1.18-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.3 KiB
 perl-Text-ParseWords        noarch 3.31-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.6 KiB
 perl-Text-Tabs+Wrap         noarch 2024.001-511.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.6 KiB
 perl-Thread-Queue           noarch 3.14-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.9 KiB
 perl-Time-Local             noarch 2:1.350-511.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  69.0 KiB
 perl-URI                    noarch 5.28-2.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 240.7 KiB
 perl-base                   noarch 2.27-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.5 KiB
 perl-constant               noarch 1.33-512.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  26.2 KiB
 perl-if                     noarch 0.61.000-511.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.8 KiB
 perl-interpreter            x86_64 4:5.40.0-511.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 122.3 KiB
 perl-libnet                 noarch 3.15-512.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 289.4 KiB
 perl-libs                   x86_64 4:5.40.0-511.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.9 MiB
 perl-locale                 noarch 1.12-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.5 KiB
 perl-macros                 noarch 4:5.40.0-511.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.5 KiB
 perl-mro                    x86_64 1.29-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  45.6 KiB
 perl-overload               noarch 1.37-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  71.5 KiB
 perl-overloading            noarch 0.02-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.8 KiB
 perl-parent                 noarch 1:0.241-511.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.8 KiB
 perl-podlators              noarch 1:6.0.2-2.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 317.5 KiB
 perl-threads                x86_64 1:2.40-511.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 115.1 KiB
 perl-threads-shared         x86_64 1.69-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  83.7 KiB
 perl-vars                   noarch 1.05-511.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.9 KiB
 python-pip-wheel            noarch 24.1.1-2.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 python3                     x86_64 3.13.0~b4-2.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  31.8 KiB
 python3-libs                x86_64 3.13.0~b4-2.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.5 MiB
 python3-numpy               x86_64 1:1.26.4-8.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  43.8 MiB
 tzdata                      noarch 2024a-9.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB

Transaction Summary:
 Installing:      156 packages

Total size of inbound packages is 163 MiB. Need to download 163 MiB.
After this operation 688 MiB will be used (install 688 MiB, remove 0 B).
[  1/156] flexiblas-devel-0:3.4.4-2.fc4 100% |   1.4 MiB/s | 112.1 KiB |  00m00s
[  2/156] armadillo-devel-0:12.8.1-3.fc 100% |  14.1 MiB/s |   2.0 MiB |  00m00s
[  3/156] gsl-devel-0:2.7.1-9.fc41.x86_ 100% |   6.5 MiB/s | 609.5 KiB |  00m00s
[  4/156] boost-devel-0:1.83.0-8.fc41.x 100% |  40.5 MiB/s |  11.7 MiB |  00m00s
[  5/156] htslib-devel-0:1.15.1-6.fc41. 100% |   1.8 MiB/s |  99.1 KiB |  00m00s
[  6/156] perl-generators-0:1.16-6.fc41 100% | 914.2 KiB/s |  16.5 KiB |  00m00s
[  7/156] make-1:4.4.1-8.fc41.x86_64    100% |  18.8 MiB/s | 579.1 KiB |  00m00s
[  8/156] armadillo-0:12.8.1-3.fc41.x86 100% |   3.5 MiB/s |  31.9 KiB |  00m00s
[  9/156] zlib-ng-compat-devel-0:2.1.7- 100% |   1.8 MiB/s |  38.1 KiB |  00m00s
[ 10/156] SuperLU-devel-0:6.0.1-6.fc41. 100% |   1.5 MiB/s |  27.3 KiB |  00m00s
[ 11/156] arpack-devel-0:3.9.1-4.fc41.x 100% | 647.6 KiB/s |  22.0 KiB |  00m00s
[ 12/156] hdf5-devel-0:1.12.1-20.fc41.x 100% |  34.5 MiB/s |   1.3 MiB |  00m00s
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[116/156] perl-Storable-1:3.32-511.fc41 100% |   4.8 MiB/s |  98.4 KiB |  00m00s
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[122/156] flexiblas-openblas-openmp64-0 100% | 903.3 KiB/s |  17.2 KiB |  00m00s
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[125/156] libicu-0:74.2-2.fc41.x86_64   100% |  33.2 MiB/s |  10.4 MiB |  00m00s
[126/156] perl-Pod-Perldoc-0:3.28.01-51 100% |   3.3 MiB/s |  80.5 KiB |  00m00s
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[130/156] groff-base-0:1.23.0-7.fc41.x8 100% |  23.8 MiB/s |   1.1 MiB |  00m00s
[131/156] perl-IPC-Open3-0:1.22-511.fc4 100% |   1.3 MiB/s |  21.8 KiB |  00m00s
[132/156] perl-Pod-Simple-1:3.45-511.fc 100% |  10.2 MiB/s | 209.6 KiB |  00m00s
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[134/156] perl-Mozilla-CA-0:20240313-2. 100% | 883.5 KiB/s |  14.1 KiB |  00m00s
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[137/156] perl-Time-Local-2:1.350-511.f 100% |   1.4 MiB/s |  34.5 KiB |  00m00s
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[139/156] expat-0:2.6.2-2.fc41.x86_64   100% |   6.5 MiB/s | 113.4 KiB |  00m00s
[140/156] libb2-0:0.98.1-12.fc41.x86_64 100% |   1.4 MiB/s |  25.7 KiB |  00m00s
[141/156] mpdecimal-0:2.5.1-16.fc41.x86 100% |   5.1 MiB/s |  89.0 KiB |  00m00s
[142/156] tzdata-0:2024a-9.fc41.noarch  100% |  15.0 MiB/s | 430.6 KiB |  00m00s
[143/156] python-pip-wheel-0:24.1.1-2.f 100% |  25.2 MiB/s |   1.2 MiB |  00m00s
[144/156] perl-Term-ANSIColor-0:5.01-51 100% |   2.7 MiB/s |  47.7 KiB |  00m00s
[145/156] perl-Term-Cap-0:1.18-511.fc41 100% |   1.3 MiB/s |  22.1 KiB |  00m00s
[146/156] ncurses-0:6.5-2.20240629.fc41 100% |  14.6 MiB/s | 419.1 KiB |  00m00s
[147/156] perl-Pod-Escapes-1:1.07-511.f 100% | 990.6 KiB/s |  19.8 KiB |  00m00s
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[149/156] perl-Text-Tabs+Wrap-0:2024.00 100% |   1.2 MiB/s |  21.9 KiB |  00m00s
[150/156] perl-AutoLoader-0:5.74-511.fc 100% |   1.3 MiB/s |  21.2 KiB |  00m00s
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[154/156] perl-FileHandle-0:2.05-511.fc 100% | 909.4 KiB/s |  15.5 KiB |  00m00s
[155/156] perl-Digest-MD5-0:2.59-5.fc41 100% |   2.0 MiB/s |  36.0 KiB |  00m00s
[156/156] perl-Digest-0:1.20-511.fc41.n 100% |   1.4 MiB/s |  24.9 KiB |  00m00s
--------------------------------------------------------------------------------
[156/156] Total                         100% |  65.3 MiB/s | 163.0 MiB |  00m02s
Running transaction
[  1/158] Verify package files          100% | 289.0   B/s | 156.0   B |  00m01s
[  2/158] Prepare transaction           100% | 658.0   B/s | 156.0   B |  00m00s
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>>> Running pre-install scriptlet: groff-base-0:1.23.0-7.fc41.x86_64
>>> Stop pre-install scriptlet: groff-base-0:1.23.0-7.fc41.x86_64
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>>> Running post-install scriptlet: groff-base-0:1.23.0-7.fc41.x86_64
>>> Stop post-install scriptlet: groff-base-0:1.23.0-7.fc41.x86_64
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[121/158] Installing kernel-headers-0:6 100% | 115.2 MiB/s |   6.4 MiB |  00m00s
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[125/158] Installing metis-0:5.1.0.3-6. 100% | 193.3 MiB/s | 989.8 KiB |  00m00s
[126/158] Installing SuperLU-0:6.0.1-6. 100% | 240.0 MiB/s | 491.5 KiB |  00m00s
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[144/158] Installing gsl-0:2.7.1-9.fc41 100% | 273.6 MiB/s |   3.3 MiB |  00m00s
[145/158] Installing htslib-0:1.15.1-6. 100% | 181.2 MiB/s |   1.1 MiB |  00m00s
[146/158] Installing make-1:4.4.1-8.fc4 100% | 180.0 MiB/s |   1.8 MiB |  00m00s
[147/158] Installing gcc-0:14.1.1-7.fc4 100% | 317.6 MiB/s | 104.2 MiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
[148/158] Installing libquadmath-devel- 100% |  22.7 MiB/s |  23.3 KiB |  00m00s
[149/158] Installing gcc-gfortran-0:14. 100% | 300.4 MiB/s |  37.2 MiB |  00m00s
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[151/158] Installing armadillo-devel-0: 100% | 128.2 MiB/s |   7.4 MiB |  00m00s
[152/158] Installing boost-devel-0:1.83 100% | 147.1 MiB/s | 145.8 MiB |  00m01s
[153/158] Installing gcc-c++-0:14.1.1-7 100% | 310.2 MiB/s |  38.2 MiB |  00m00s
[154/158] Installing annobin-plugin-gcc 100% |  34.1 MiB/s | 979.0 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
[155/158] Installing gcc-plugin-annobin 100% |   2.1 MiB/s |  58.7 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
[156/158] Installing htslib-devel-0:1.1 100% | 101.4 MiB/s | 415.5 KiB |  00m00s
[157/158] Installing gsl-devel-0:2.7.1- 100% | 127.1 MiB/s |   1.7 MiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[158/158] Installing perl-generators-0: 100% |  78.6 KiB/s |  23.2 KiB |  00m00s
>>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-35.fc41.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-35.fc41.x86_64
>>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64
>>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64
Complete!
Warning: skipped PGP checks for 156 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch
Finish: build setup for mmseq-1.0.11-21.fc41.src.rpm
Start: rpmbuild mmseq-1.0.11-21.fc41.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1721952000
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.fKB8zO
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.yAN7s1
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf mmseq-1.0.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.11
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #2 (mmseq-zlib.patch):
+ echo 'Patch #2 (mmseq-zlib.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
+ rm -f bin/offsetGTF-linux bin/postdiff-linux
+ sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.WlZi4X
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ cd src
+ make -j2 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp 
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c -o fasta.o fasta.c
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 offsetGTF.cpp -o ../bin/offsetGTF
offsetGTF.cpp: In function ‘int main(int, char**)’:
offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  115 |       while(gff_ind < gff_positions[chrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  117 |               pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable ‘curoff’ [-Wunused-variable]
  114 |       int curoff=offset;
      |           ^~~~~~
offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  150 |       while(gff_ind < gff_positions[prevchrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  163 |           pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  177 |     while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
      |           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  235 |     for(int i=5; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  237 |       if(i < tokens.size()-1) {
      |          ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable ‘gff_pos’ [-Wunused-variable]
  108 |   int gff_pos= -1;
      |       ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 t2g_hits.cpp -o ../bin/t2g_hits
t2g_hits.cpp: In function ‘int main(int, char**)’:
t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   90 |         for(int i=2; i < tokens.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~
t2g_hits.cpp:112:13: warning: ignoring return value of ‘_FIter std::unique(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<__cxx11::basic_string<char>*, vector<__cxx11::basic_string<char> > >]’, declared with attribute ‘nodiscard’ [-Wunused-result]
  112 |       unique(comb.begin(), comb.end());
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
                 from t2g_hits.cpp:27:
/usr/include/c++/14/bits/stl_algo.h:891:5: note: declared here
  891 |     unique(_ForwardIterator __first, _ForwardIterator __last)
      |     ^~~~~~
g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmcollapse.cpp: In function ‘void get_unidentifiable_transcripts(std::string, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, bool>&)’:
mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  158 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  213 |     for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  259 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)’:
mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  400 |   for(int s=0; s < R.n_slices; s++) {
      |                ~~^~~~~~~~~~~~
mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  401 |     for(int t=0; t < candidates.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  402 |       for(int j=1; j < indexes.size(); j++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  414 |     for(int j=1; j < indexes.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  417 |       for(int i=0; i < R.n_cols; i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  426 |   for(int i=0; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |   for(int i=1; i < tset.size(); i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  437 |   for(int i=1; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >)’:
mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  445 |   for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
      |                ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  452 |   for(int c=0; c < candidates.size(); c++) {
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  456 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  464 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  469 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  476 |   for(int i=0; i < toshed.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)’:
mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  486 |     for(int v= 0; v < R.n_rows; v++) {
      |                   ~~^~~~~~~~~~
mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
  492 |       for(int i=0; i < u.size(); i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp: In function ‘void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&)’:
mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  519 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  543 |         for(int t=0; t < tokens.size(); t++) {
      |                      ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘int main(int, char**)’:
mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  632 |   for(int i=1; i < basenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  691 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  707 |   for(int i=0; i < candidates.size(); i++) ts.push_back(i);
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  732 |     for(int i=0 ;i < maxcorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  738 |     for(int i=0 ;i < mincorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  802 |         for(int i=0 ;i < maxcorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  808 |         for(int i=0 ;i < mincorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  827 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  852 |       for(int t=0; t < tokens.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  882 |       for(int t=0; t < tokens2.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  934 |     for(int t=0; t < M.n_cols; t++) {
      |                  ~~^~~~~~~~~~
mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  963 |     for(int i=1; i < tokens2.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  976 |       if(MM.size1() < i+1 ) factor1=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  977 |       if(MM.size2() < j+1 ) factor2=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1010 |     for(int t=0; t < ids.size(); t++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1083 |     for(int i=0; i < ids.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1092 |     for(int v = 0; v < M.n_cols; v++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:840:9: warning: unused variable ‘isident’ [-Wunused-variable]
  840 |     int isident=0;
      |         ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmseq.cpp: In function ‘std::vector<double> meanvar(std::vector<double>, double, double)’:
mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  130 |   for(int i=0;i < v.size(); i++) {
      |               ~~^~~~~~~~~~
mmseq.cpp: In function ‘int main(int, char**)’:
mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  244 |       for(int i=0; i < tokens.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~
mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  423 |       if(M.size1() < m ) factor1=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  424 |       if(M.size2() < n ) factor2=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  594 |   for(unsigned t=0; t < n; t++)  {
      |                     ~~^~~
mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  736 |     for(unsigned t=0; t < n; t++)
      |                       ~~^~~
mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  765 |       for(unsigned t=0; t < n; t++)
      |                         ~~^~~
mmseq.cpp:774:11: warning: unused variable ‘threadid’ [-Wunused-variable]
  774 |       int threadid=OMP_GET_THREAD_NUM;
      |           ^~~~~~~~
mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  829 |   for(unsigned t=0; t < n; t++)
      |                     ~~^~~
mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  912 |       for(unsigned t=0; t < n; t++) {
      |                         ~~^~~
mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  940 |   for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  961 |   for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1098 |   for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
      |                     ~~^~~
mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1112 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1136 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1144 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1149 |   for(int i=0;i < identical_transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1156 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1161 |   for(int i=0;i < gene2transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1168 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1179 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1189 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1208 |     for(int t=0; t < identical_transcripts.size() ; t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1212 |     for(int t=0; t < gene2transcripts.size(); t++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1226 |   for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1227 |   for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1330 |   for(int t=0; t < identical_transcripts.size(); t++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1349 |   for(int g=0; g < gene2transcripts.size(); g++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1473 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1475 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1482 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1484 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1506 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1508 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1514 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1516 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1536 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1538 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1544 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1546 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1560 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1562 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1582 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1584 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1599 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1601 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1619 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1621 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1644 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1646 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1656 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1658 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:308:8: warning: unused variable ‘buf16384’ [-Wunused-variable]
  308 |   char buf16384[16384];
      |        ^~~~~~~~
mmseq.cpp:391:8: warning: variable ‘doublehit’ set but not used [-Wunused-but-set-variable]
  391 |   bool doublehit;
      |        ^~~~~~~~~
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
extract_transcripts.cpp: In function ‘int main(int, char**)’:
extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  122 |       for(int i=0; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  169 |     for(int i=0; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  195 |       for(int i=0; i < it->starts()->size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~
extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  203 |       while(faline < stitch.size()) {
      |             ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable ‘line’ [-Wunused-variable]
  108 |   int line=0;
      |       ^~~~
bam2hits.cpp: In function ‘void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)’:
bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  109 |   for(int i=0; i < sortedfastas.size()-1; i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  119 |       for(int j=0; j < curSet.size()-1; j++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  137 |   for(int j=0; j < curSet.size()-1; j++) {
      |                ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp: In function ‘std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)’:
bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Alignment>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |   for(int j=0; j < alns.size(); j++) {
      |                ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  219 |     if(i < torem.size() && j==torem[i]) {
      |        ~~^~~~~~~~~~~~~~
bam2hits.cpp: In function ‘int main(int, char**)’:
bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  518 |         if(_B != tg[0].size()-2) {
      |            ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  520 |           if(_A == tg[0].size()-2) {
      |              ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  522 |             if(_A != tg[1].size()-2) {
      |                ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  558 |       for(int i=1; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  609 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  645 |     for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
      |                 ~~^~~~~~~~~~~~~~~
bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  659 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  662 |         for(int j =0; j < fastas[i].seq().size(); j++) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  663 |           int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
      |                                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  791 |       for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  920 |     for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  948 |     for(int i=0; i < testIsizes.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  959 |     for(int i=0; i < heights.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  997 |       for(int fl=1; fl <= (it->seq()).size(); fl++) {
      |                     ~~~^~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:1091:56: warning: comparing the result of pointer addition ‘(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >::operator->()->Alignment::NM()))’ and NULL [-Waddress]
 1091 |             ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM")));
      |                                                        ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitstools.cpp: In function ‘void convert(char*, std::string)’:
hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   51 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function ‘int main(int, char**)’:
hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |                 for(int i = 0; i < transcriptName.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  136 |     for(int i = 0; i < transcriptName.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmdiff.cpp: In function ‘void parse_mmseq(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)’:
mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  100 |   for(int i=0; i < filenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  111 |     for(int j=0; j < tokens.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  138 |       if(k + 1 > features.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  147 |       if(k+1 > y.n_rows) {
      |          ~~~~^~~~~~~~~~
mmdiff.cpp:152:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  152 |       if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
      |          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  173 |   if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
      |                                                    ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:94:46: warning: variable ‘mcse_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                              ^~~~~~~~
mmdiff.cpp:94:59: warning: variable ‘iact_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                                           ^~~~~~~~
mmdiff.cpp: In function ‘void apply_normalisation(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, arma::Mat<double>&, arma::Mat<double>&, double)’:
mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  212 |   for(int i=0; i < uh.n_rows; i++) {
      |                ~~^~~~~~~~~~~
mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  214 |     for(int j=0; j < uh.n_cols; j++) {
      |                  ~~^~~~~~~~~~~
mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  230 |   for(int i=0; i < use.size(); i++) {
      |                ~~^~~~~~~~~~~~
mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  232 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  239 |   for(int sample=0; sample < y.n_cols; sample++) {
      |                     ~~~~~~~^~~~~~~~~~
mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  241 |     for(int i=0; i < use.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  246 |     for(int i=0; i < y.n_rows; i++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)’:
mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  257 |   for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
      |                ~^~~~~~~~~~
mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  258 |   for(int i=0; i < y.n_rows; i++) {
      |                ~~^~~~~~~~~~
mmdiff.cpp:259:19: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<int*, vector<int, allocator<int> > >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
  259 |     random_shuffle(randinds.begin(), randinds.end());
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
                 from mmdiff.cpp:31:
/usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here
 4491 |     random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
      |     ^~~~~~~~~~~~~~
mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  260 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void parse_matrices(std::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)’:
mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  310 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function ‘int main(int, char**)’:
mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  420 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  439 |       while(ss < arguments.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  451 |       if(ss != arguments.size()) {
      |          ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  578 |   for(int i=0; i < arguments.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  640 |     for(int i=0; i < simple_de.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:759:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  759 |     if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  764 |     for(int feature=0; feature < features.size(); feature++) {
      |                        ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:837:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  837 |     if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  886 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  898 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string<char>::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare]
  902 |       found2 = found2==string::npos ? -1 : found2;
      |                ~~~~~~^~~~~~~~~~~~~~
mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  907 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  909 |     if(f < samplenames.size()-1) cout << "\t";
      |        ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  914 |   for(int feature=0; feature < features.size(); feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  926 |         for(int l=0; l < M.n_cols; l++) {
      |                      ~~^~~~~~~~~~
mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  936 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  939 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  941 |       if(f < samplenames.size()-1) cout << "\t";
      |          ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  951 |       for(int feature=0; feature < features.size(); feature++) {
      |                          ~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/bin/ld: /tmp/ccipef1A.ltrans0.ltrans.o: in function `main':
/builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/src/bam2hits.cpp:653:(.text.startup+0x25dd): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.HlGWbk
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ '[' /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
++ dirname /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ mkdir /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.0.11-21.fc41 --unique-debug-suffix -1.0.11-21.fc41.x86_64 --unique-debug-src-base mmseq-1.0.11-21.fc41.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11
find-debuginfo: starting
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/mmseq-1.0.11-21.fc41.x86_64
542 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
SOURCE_DATE_EPOCH timestamp: 1721952000 (2024-07-26 00:00:00 UTC)
SOURCE_DATE_EPOCH timestamp is in the future: 1721952000 > 1721950100
SOURCE_DATE_EPOCH timestamp: 1721952000 (2024-07-26 00:00:00 UTC)
SOURCE_DATE_EPOCH timestamp is in the future: 1721952000 > 1721950100
SOURCE_DATE_EPOCH timestamp: 1721952000 (2024-07-26 00:00:00 UTC)
SOURCE_DATE_EPOCH timestamp is in the future: 1721952000 > 1721950100
Scanned 12 directories and 40 files,
               processed 0 inodes,
               0 modified (0 replaced + 0 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.PPyOEO
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
++ bin/mmseq --version
++ true
+ test mmseq-1.0.11 = mmseq-1.0.11
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: mmseq-1.0.11-21.fc41.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.pZcknP
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd mmseq-1.0.11
+ DOCDIR=/builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/README.md /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/COPYING /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/doc /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: mmseq = 1.0.11-21.fc41 mmseq(x86-64) = 1.0.11-21.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh libboost_iostreams.so.1.83.0()(64bit) libboost_regex.so.1.83.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debugsource-1.0.11-21.fc41.x86_64
Provides: mmseq-debugsource = 1.0.11-21.fc41 mmseq-debugsource(x86-64) = 1.0.11-21.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: mmseq-debuginfo-1.0.11-21.fc41.x86_64
Provides: debuginfo(build-id) = 3b4a36c13c0cb3627798696e40867c1d6209f9c2 debuginfo(build-id) = 5ff37445858c9e6f04d629b6ef23c5fbe6a064dc debuginfo(build-id) = 6355b2370f0f0805eb17c8e1cdc023bfbbd29484 debuginfo(build-id) = 8725f02f96a60b8df497ea60369b2d4adcfcc8f0 debuginfo(build-id) = b48653f10759b42da63a0eef08bd05c1a4b8590c debuginfo(build-id) = b6dc0ea947096bf55b09c1f08f1976d87a6f569d debuginfo(build-id) = e0315554fc6dd23e18a025f5c84b635be5892047 debuginfo(build-id) = f90d1ced2843342861cdd576a88bb491c95ec764 mmseq-debuginfo = 1.0.11-21.fc41 mmseq-debuginfo(x86-64) = 1.0.11-21.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: mmseq-debugsource(x86-64) = 1.0.11-21.fc41
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
Wrote: /builddir/build/RPMS/mmseq-1.0.11-21.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-21.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-21.fc41.x86_64.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.glHlWn
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild mmseq-1.0.11-21.fc41.src.rpm
Finish: build phase for mmseq-1.0.11-21.fc41.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1721949972.550840/root/var/log/dnf5.log
INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-21.fc41.src.rpm) Config(child) 1 minutes 33 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "mmseq-debugsource",
            "epoch": null,
            "version": "1.0.11",
            "release": "21.fc41",
            "arch": "x86_64"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "21.fc41",
            "arch": "x86_64"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "21.fc41",
            "arch": "src"
        },
        {
            "name": "mmseq-debuginfo",
            "epoch": null,
            "version": "1.0.11",
            "release": "21.fc41",
            "arch": "x86_64"
        }
    ]
}
RPMResults finished