Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c149' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7989576-fedora-rawhide-i386 --chroot fedora-rawhide-i386 Version: 0.73 PID: 6765 Logging PID: 6766 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7989576, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-i386', 'enable_net': False, 'fedora_review': False, 'git_hash': 'ee255563984fcb72a27985f21524dd27d5aa80ad', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:3/ProDy', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'ProDy', 'package_version': '2.4.1-7', 'project_dirname': 'openblas-0.3.23:pr:3', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-rawhide-i386/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/msuchy', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/msuchy', 'tags': [], 'task_id': '7989576-fedora-rawhide-i386', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:3/ProDy /var/lib/copr-rpmbuild/workspace/workdir-z7xe0xez/ProDy --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:3/ProDy', '/var/lib/copr-rpmbuild/workspace/workdir-z7xe0xez/ProDy', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-z7xe0xez/ProDy'... Running: git checkout ee255563984fcb72a27985f21524dd27d5aa80ad -- cmd: ['git', 'checkout', 'ee255563984fcb72a27985f21524dd27d5aa80ad', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-z7xe0xez/ProDy rc: 0 stdout: stderr: Note: switching to 'ee255563984fcb72a27985f21524dd27d5aa80ad'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at ee25556 automatic import of ProDy Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-z7xe0xez/ProDy rc: 0 stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading ProDy-2.4.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o ProDy-2.4.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23:pr:3/ProDy/ProDy-2.4.1.tar.gz/md5/ed3fa7549c21d8c68ed832b970952fe4/ProDy-2.4.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 25.9M 100 25.9M 0 0 54.3M 0 --:--:-- --:--:-- --:--:-- 54.3M INFO: Reading stdout from command: md5sum ProDy-2.4.1.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-z7xe0xez/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-z7xe0xez/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725633524.351470 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-z7xe0xez/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-z7xe0xez/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725633524.351470 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-z7xe0xez/ProDy/ProDy.spec) Config(fedora-rawhide-i686) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1725633524.351470/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-i686-bootstrap-1725633524.351470/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/d3c513cc9c079daa4915dff871501a2918b9936f70c4e817aef7ba20374f3661/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/d3c513cc9c079daa4915dff871501a2918b9936f70c4e817aef7ba20374f3661/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1725633524.351470/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-6.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.5.0-2.fc41.x86_64 dnf5-plugins-5.2.5.0-2.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: local 100% | 29.2 MiB/s | 12.7 MiB | 00m00s Copr repository 100% | 11.4 MiB/s | 2.7 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 21.2 MiB/s | 12.7 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash i686 5.2.32-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.3 MiB bzip2 i686 1.0.8-19.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 93.9 KiB coreutils i686 9.5-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.7 MiB cpio i686 2.15-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB diffutils i686 3.10-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB fedora-release noarch 42-0.3 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B findutils i686 1:4.10.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 MiB gawk i686 5.3.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB glibc-minimal-langpack i686 2.40.9000-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B grep i686 3.11-9.fc41 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.5 MiB which i686 2.21-42.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.9 KiB xz i686 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB Installing dependencies: add-determinism i686 0.3.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB alternatives i686 1.30-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 65.5 KiB ansible-srpm-macros noarch 1-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.7 KiB audit-libs i686 4.0.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 341.8 KiB authselect i686 1.5.0-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 160.6 KiB authselect-libs i686 1.5.0-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 821.4 KiB basesystem noarch 11-21.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B binutils i686 2.43.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 25.4 MiB build-reproducibility-srpm-macros noarch 0.3.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 735.0 B bzip2-libs i686 1.0.8-19.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 76.0 KiB ca-certificates noarch 2024.2.68_v8.0.302-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB coreutils-common i686 9.5-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.2 MiB cracklib i686 2.9.11-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235.8 KiB crypto-policies noarch 20240828-1.git5f66e81.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.9 KiB curl i686 8.9.1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 799.4 KiB cyrus-sasl-lib i686 2.1.28-27.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB debugedit i686 5.0-17.fc41 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openblas-srpm-macros noarch 2-18.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0 B openldap i686 2.6.8-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 677.7 KiB openssl-libs i686 1:3.2.2-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.3 MiB p11-kit i686 0.25.5-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB p11-kit-trust i686 0.25.5-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 361.6 KiB package-notes-srpm-macros noarch 0.5-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam i686 1.6.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB pam-libs i686 1.6.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 132.7 KiB pcre2 i686 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 660.1 KiB pcre2-syntax noarch 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-56.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf i686 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 87.0 KiB pkgconf-m4 noarch 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB pkgconf-pkg-config i686 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 979.0 B popt i686 1.19-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.0 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.14.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.7.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline i686 8.2-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 465.5 KiB rpm i686 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB rpm-build-libs i686 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.4 KiB rpm-libs i686 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 764.8 KiB rpm-sequoia i686 1.7.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB rust-srpm-macros noarch 26.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs i686 3.46.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB systemd-libs i686 256.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB util-linux-core i686 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB xxhash-libs i686 0.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 115.9 KiB xz-libs i686 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 229.8 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip i686 3.0-41.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 707.1 KiB zlib-ng-compat i686 2.1.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.4 KiB zstd i686 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB Installing groups: build Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation 177 MiB will be used (install 177 MiB, remove 0 B). [ 1/153] bzip2-0:1.0.8-19.fc41.i686 100% | 743.1 KiB/s | 52.8 KiB | 00m00s [ 2/153] cpio-0:2.15-2.fc41.i686 100% | 7.1 MiB/s | 290.8 KiB | 00m00s [ 3/153] bash-0:5.2.32-2.fc42.i686 100% | 14.1 MiB/s | 1.8 MiB | 00m00s [ 4/153] coreutils-0:9.5-9.fc42.i686 100% | 8.6 MiB/s | 1.2 MiB | 00m00s [ 5/153] diffutils-0:3.10-8.fc41.i686 100% | 13.1 MiB/s | 403.3 KiB | 00m00s [ 6/153] fedora-release-0:42-0.3.noarc 100% | 764.2 KiB/s | 12.2 KiB | 00m00s [ 7/153] findutils-1:4.10.0-4.fc41.i68 100% | 22.4 MiB/s | 551.1 KiB | 00m00s [ 8/153] glibc-minimal-langpack-0:2.40 100% | 5.1 MiB/s | 120.9 KiB | 00m00s [ 9/153] gawk-0:5.3.0-4.fc41.i686 100% | 32.7 MiB/s | 1.0 MiB | 00m00s [ 10/153] grep-0:3.11-9.fc41.i686 100% | 11.5 MiB/s | 295.5 KiB | 00m00s [ 11/153] gzip-0:1.13-2.fc41.i686 100% | 7.6 MiB/s | 162.6 KiB | 00m00s [ 12/153] info-0:7.1-3.fc41.i686 100% | 8.3 MiB/s | 186.0 KiB | 00m00s [ 13/153] patch-0:2.7.6-25.fc41.i686 100% | 6.3 MiB/s | 142.2 KiB | 00m00s [ 14/153] redhat-rpm-config-0:294-1.fc4 100% | 4.3 MiB/s | 75.5 KiB | 00m00s [ 15/153] rpm-build-0:4.19.93-1.fc42.i6 100% | 3.9 MiB/s | 76.5 KiB | 00m00s [ 16/153] sed-0:4.9-3.fc41.i686 100% | 13.2 MiB/s | 311.4 KiB | 00m00s [ 17/153] shadow-utils-2:4.15.1-9.fc41. 100% | 30.0 MiB/s | 1.3 MiB | 00m00s [ 18/153] tar-2:1.35-4.fc41.i686 100% | 24.2 MiB/s | 866.7 KiB | 00m00s [ 19/153] unzip-0:6.0-64.fc41.i686 100% | 8.0 MiB/s | 180.7 KiB | 00m00s [ 20/153] which-0:2.21-42.fc41.i686 100% | 1.8 MiB/s | 41.5 KiB | 00m00s [ 21/153] util-linux-0:2.40.2-8.fc42.i6 100% | 27.6 MiB/s | 1.2 MiB | 00m00s [ 22/153] xz-1:5.6.2-2.fc41.i686 100% | 9.4 MiB/s | 462.9 KiB | 00m00s [ 23/153] xz-libs-1:5.6.2-2.fc41.i686 100% | 4.4 MiB/s | 122.7 KiB | 00m00s [ 24/153] audit-libs-0:4.0.2-1.fc41.i68 100% | 6.0 MiB/s | 129.0 KiB | 00m00s [ 25/153] glibc-0:2.40.9000-1.fc42.i686 100% | 32.7 MiB/s | 2.0 MiB | 00m00s [ 26/153] authselect-libs-0:1.5.0-7.fc4 100% | 10.1 MiB/s | 207.5 KiB | 00m00s [ 27/153] libblkid-0:2.40.2-8.fc42.i686 100% | 6.4 MiB/s | 137.5 KiB | 00m00s [ 28/153] libcap-ng-0:0.8.5-3.fc41.i686 100% | 1.7 MiB/s | 33.2 KiB | 00m00s [ 29/153] libfdisk-0:2.40.2-8.fc42.i686 100% | 9.0 MiB/s | 176.0 KiB | 00m00s [ 30/153] libmount-0:2.40.2-8.fc42.i686 100% | 8.4 MiB/s | 163.3 KiB | 00m00s [ 31/153] libselinux-0:3.7-5.fc41.i686 100% | 5.0 MiB/s | 92.4 KiB | 00m00s [ 32/153] libsmartcols-0:2.40.2-8.fc42. 100% | 5.0 MiB/s | 86.2 KiB | 00m00s [ 33/153] libuuid-0:2.40.2-8.fc42.i686 100% | 1.8 MiB/s | 30.6 KiB | 00m00s [ 34/153] ncurses-libs-0:6.5-2.20240629 100% | 16.5 MiB/s | 355.3 KiB | 00m00s [ 35/153] pam-libs-0:1.6.1-6.fc42.i686 100% | 3.1 MiB/s | 59.6 KiB | 00m00s [ 36/153] pam-0:1.6.1-6.fc42.i686 100% | 20.0 MiB/s | 531.9 KiB | 00m00s [ 37/153] readline-0:8.2-11.fc42.i686 100% | 11.3 MiB/s | 219.0 KiB | 00m00s [ 38/153] systemd-libs-0:256.5-1.fc42.i 100% | 25.2 MiB/s | 772.8 KiB | 00m00s [ 39/153] util-linux-core-0:2.40.2-8.fc 100% | 19.4 MiB/s | 535.7 KiB | 00m00s [ 40/153] zlib-ng-compat-0:2.1.7-2.fc41 100% | 4.5 MiB/s | 82.1 KiB | 00m00s [ 41/153] bzip2-libs-0:1.0.8-19.fc41.i6 100% | 2.2 MiB/s | 41.3 KiB | 00m00s [ 42/153] libacl-0:2.3.2-2.fc41.i686 100% | 1.6 MiB/s | 26.0 KiB | 00m00s [ 43/153] libcap-0:2.70-4.fc41.i686 100% | 3.9 MiB/s | 88.3 KiB | 00m00s [ 44/153] libgcc-0:14.2.1-1.fc42.i686 100% | 7.7 MiB/s | 150.2 KiB | 00m00s [ 45/153] libattr-0:2.5.2-4.fc41.i686 100% | 974.7 KiB/s | 18.5 KiB | 00m00s [ 46/153] libeconf-0:0.6.2-3.fc41.i686 100% | 1.8 MiB/s | 34.1 KiB | 00m00s [ 47/153] libxcrypt-0:4.4.36-7.fc41.i68 100% | 6.2 MiB/s | 120.6 KiB | 00m00s [ 48/153] libsemanage-0:3.7-2.fc41.i686 100% | 6.1 MiB/s | 125.8 KiB | 00m00s [ 49/153] setup-0:2.15.0-5.fc41.noarch 100% | 7.2 MiB/s | 148.3 KiB | 00m00s [ 50/153] debugedit-0:5.0-17.fc41.i686 100% | 4.4 MiB/s | 81.1 KiB | 00m00s [ 51/153] elfutils-libelf-0:0.191-8.fc4 100% | 7.7 MiB/s | 214.0 KiB | 00m00s [ 52/153] elfutils-0:0.191-8.fc41.i686 100% | 12.2 MiB/s | 561.9 KiB | 00m00s [ 53/153] file-0:5.45-7.fc41.i686 100% | 2.5 MiB/s | 49.1 KiB | 00m00s [ 54/153] libarchive-0:3.7.4-3.fc41.i68 100% | 15.2 MiB/s | 451.3 KiB | 00m00s [ 55/153] pkgconf-pkg-config-0:2.3.0-1. 100% | 523.8 KiB/s | 10.0 KiB | 00m00s [ 56/153] popt-0:1.19-7.fc41.i686 100% | 3.0 MiB/s | 61.5 KiB | 00m00s [ 57/153] rpm-0:4.19.93-1.fc42.i686 100% | 17.0 MiB/s | 523.5 KiB | 00m00s [ 58/153] rpm-build-libs-0:4.19.93-1.fc 100% | 5.7 MiB/s | 105.5 KiB | 00m00s [ 59/153] binutils-0:2.43.1-1.fc42.i686 100% | 44.6 MiB/s | 5.9 MiB | 00m00s [ 60/153] rpm-libs-0:4.19.93-1.fc42.i68 100% | 13.8 MiB/s | 340.1 KiB | 00m00s [ 61/153] zstd-0:1.5.6-2.fc41.i686 100% | 14.4 MiB/s | 455.8 KiB | 00m00s [ 62/153] curl-0:8.9.1-3.fc42.i686 100% | 13.6 MiB/s | 321.4 KiB | 00m00s [ 63/153] ansible-srpm-macros-0:1-16.fc 100% | 1.1 MiB/s | 20.8 KiB | 00m00s [ 64/153] build-reproducibility-srpm-ma 100% | 623.7 KiB/s | 10.6 KiB | 00m00s [ 65/153] dwz-0:0.15-7.fc41.i686 100% | 7.1 MiB/s | 145.9 KiB | 00m00s [ 66/153] efi-srpm-macros-0:5-12.fc41.n 100% | 1.0 MiB/s | 22.4 KiB | 00m00s [ 67/153] glibc-gconv-extra-0:2.40.9000 100% | 25.4 MiB/s | 1.7 MiB | 00m00s [ 68/153] fonts-srpm-macros-1:2.0.5-17. 100% | 1.5 MiB/s | 27.0 KiB | 00m00s [ 69/153] forge-srpm-macros-0:0.3.2-1.f 100% | 1.1 MiB/s | 19.7 KiB | 00m00s [ 70/153] fpc-srpm-macros-0:1.3-13.fc41 100% | 468.3 KiB/s | 8.0 KiB | 00m00s [ 71/153] ghc-srpm-macros-0:1.9.1-2.fc4 100% | 532.7 KiB/s | 9.1 KiB | 00m00s [ 72/153] gnat-srpm-macros-0:6-6.fc41.n 100% | 526.6 KiB/s | 9.0 KiB | 00m00s [ 73/153] go-srpm-macros-0:3.6.0-3.fc41 100% | 1.6 MiB/s | 28.0 KiB | 00m00s [ 74/153] kernel-srpm-macros-0:1.0-24.f 100% | 616.8 KiB/s | 9.9 KiB | 00m00s [ 75/153] lua-srpm-macros-0:1-14.fc41.n 100% | 554.9 KiB/s | 8.9 KiB | 00m00s [ 76/153] ocaml-srpm-macros-0:10-3.fc41 100% | 541.1 KiB/s | 9.2 KiB | 00m00s [ 77/153] openblas-srpm-macros-0:2-18.f 100% | 482.2 KiB/s | 7.7 KiB | 00m00s [ 78/153] package-notes-srpm-macros-0:0 100% | 578.2 KiB/s | 9.8 KiB | 00m00s [ 79/153] perl-srpm-macros-0:1-56.fc41. 100% | 500.7 KiB/s | 8.5 KiB | 00m00s [ 80/153] pyproject-srpm-macros-0:1.14. 100% | 789.8 KiB/s | 13.4 KiB | 00m00s [ 81/153] python-srpm-macros-0:3.13-3.f 100% | 1.2 MiB/s | 23.7 KiB | 00m00s [ 82/153] qt5-srpm-macros-0:5.15.15-1.f 100% | 523.4 KiB/s | 8.9 KiB | 00m00s [ 83/153] qt6-srpm-macros-0:6.7.2-3.fc4 100% | 570.4 KiB/s | 9.1 KiB | 00m00s [ 84/153] rust-srpm-macros-0:26.3-3.fc4 100% | 756.2 KiB/s | 12.1 KiB | 00m00s [ 85/153] zig-srpm-macros-0:1-3.fc41.no 100% | 406.2 KiB/s | 8.1 KiB | 00m00s [ 86/153] zip-0:3.0-41.fc41.i686 100% | 9.7 MiB/s | 267.5 KiB | 00m00s [ 87/153] pkgconf-0:2.3.0-1.fc42.i686 100% | 2.0 MiB/s | 45.5 KiB | 00m00s [ 88/153] pkgconf-m4-0:2.3.0-1.fc42.noa 100% | 753.8 KiB/s | 14.3 KiB | 00m00s [ 89/153] ed-0:1.20.2-2.fc41.i686 100% | 4.7 MiB/s | 81.2 KiB | 00m00s [ 90/153] libpkgconf-0:2.3.0-1.fc42.i68 100% | 2.3 MiB/s | 41.7 KiB | 00m00s [ 91/153] authselect-0:1.5.0-7.fc41.i68 100% | 7.3 MiB/s | 142.3 KiB | 00m00s [ 92/153] gdbm-1:1.23-7.fc41.i686 100% | 8.1 MiB/s | 149.5 KiB | 00m00s [ 93/153] gdbm-libs-1:1.23-7.fc41.i686 100% | 3.1 MiB/s | 59.8 KiB | 00m00s [ 94/153] libnsl2-0:2.0.1-2.fc41.i686 100% | 1.8 MiB/s | 30.7 KiB | 00m00s [ 95/153] libpwquality-0:1.4.5-11.fc41. 100% | 5.9 MiB/s | 109.0 KiB | 00m00s [ 96/153] libtirpc-0:1.3.5-0.fc41.i686 100% | 5.5 MiB/s | 102.0 KiB | 00m00s [ 97/153] crypto-policies-0:20240828-1. 100% | 3.1 MiB/s | 69.9 KiB | 00m00s [ 98/153] ca-certificates-0:2024.2.68_v 100% | 22.3 MiB/s | 868.2 KiB | 00m00s [ 99/153] ncurses-base-0:6.5-2.20240629 100% | 2.8 MiB/s | 63.8 KiB | 00m00s [100/153] libcom_err-0:1.47.1-3.fc41.i6 100% | 1.3 MiB/s | 26.9 KiB | 00m00s [101/153] krb5-libs-0:1.21.3-2.fc41.i68 100% | 23.1 MiB/s | 804.5 KiB | 00m00s [102/153] openssl-libs-1:3.2.2-5.fc41.i 100% | 25.3 MiB/s | 2.3 MiB | 00m00s [103/153] libsepol-0:3.7-2.fc41.i686 100% | 15.8 MiB/s | 355.7 KiB | 00m00s [104/153] pcre2-0:10.44-1.fc41.1.i686 100% | 11.7 MiB/s | 240.0 KiB | 00m00s [105/153] cracklib-0:2.9.11-6.fc41.i686 100% | 4.2 MiB/s | 82.5 KiB | 00m00s [106/153] libxml2-0:2.12.8-2.fc41.i686 100% | 23.8 MiB/s | 730.6 KiB | 00m00s [107/153] libzstd-0:1.5.6-2.fc41.i686 100% | 10.3 MiB/s | 285.8 KiB | 00m00s [108/153] lz4-libs-0:1.10.0-1.fc41.i686 100% | 3.1 MiB/s | 73.5 KiB | 00m00s [109/153] keyutils-libs-0:1.6.3-4.fc41. 100% | 1.8 MiB/s | 32.0 KiB | 00m00s [110/153] libverto-0:0.3.2-9.fc41.i686 100% | 1.2 MiB/s | 21.2 KiB | 00m00s [111/153] glibc-common-0:2.40.9000-1.fc 100% | 14.9 MiB/s | 413.2 KiB | 00m00s [112/153] basesystem-0:11-21.fc41.noarc 100% | 409.6 KiB/s | 7.4 KiB | 00m00s [113/153] gmp-1:6.3.0-2.fc41.i686 100% | 14.5 MiB/s | 311.3 KiB | 00m00s [114/153] filesystem-0:3.18-23.fc41.i68 100% | 21.4 MiB/s | 1.1 MiB | 00m00s [115/153] mpfr-0:4.2.1-5.fc41.i686 100% | 11.7 MiB/s | 385.0 KiB | 00m00s [116/153] file-libs-0:5.45-7.fc41.i686 100% | 24.3 MiB/s | 770.6 KiB | 00m00s [117/153] fedora-release-common-0:42-0. 100% | 1.1 MiB/s | 23.0 KiB | 00m00s [118/153] elfutils-debuginfod-client-0: 100% | 1.8 MiB/s | 37.6 KiB | 00m00s [119/153] elfutils-libs-0:0.191-8.fc41. 100% | 10.5 MiB/s | 290.9 KiB | 00m00s [120/153] libstdc++-0:14.2.1-1.fc42.i68 100% | 20.3 MiB/s | 954.8 KiB | 00m00s [121/153] p11-kit-0:0.25.5-3.fc41.i686 100% | 15.2 MiB/s | 481.9 KiB | 00m00s [122/153] p11-kit-trust-0:0.25.5-3.fc41 100% | 7.1 MiB/s | 137.8 KiB | 00m00s [123/153] alternatives-0:1.30-1.fc41.i6 100% | 1.1 MiB/s | 42.8 KiB | 00m00s [124/153] add-determinism-0:0.3.6-1.fc4 100% | 16.3 MiB/s | 868.7 KiB | 00m00s [125/153] coreutils-common-0:9.5-9.fc42 100% | 18.4 MiB/s | 2.1 MiB | 00m00s [126/153] jansson-0:2.13.1-10.fc41.i686 100% | 2.2 MiB/s | 45.9 KiB | 00m00s [127/153] lua-libs-0:5.4.6-6.fc41.i686 100% | 7.7 MiB/s | 149.0 KiB | 00m00s [128/153] libgomp-0:14.2.1-1.fc42.i686 100% | 15.8 MiB/s | 355.4 KiB | 00m00s [129/153] sqlite-libs-0:3.46.0-4.fc41.i 100% | 18.9 MiB/s | 755.6 KiB | 00m00s [130/153] rpm-sequoia-0:1.7.0-2.fc41.i6 100% | 17.4 MiB/s | 980.1 KiB | 00m00s [131/153] pcre2-syntax-0:10.44-1.fc41.1 100% | 8.1 MiB/s | 149.9 KiB | 00m00s [132/153] libtasn1-0:4.19.0-9.fc41.i686 100% | 4.3 MiB/s | 75.3 KiB | 00m00s [133/153] libffi-0:3.4.6-3.fc42.i686 100% | 2.3 MiB/s | 38.0 KiB | 00m00s [134/153] fedora-release-identity-basic 100% | 723.0 KiB/s | 13.0 KiB | 00m00s [135/153] fedora-repos-0:42-0.1.noarch 100% | 539.4 KiB/s | 9.2 KiB | 00m00s [136/153] elfutils-default-yama-scope-0 100% | 769.0 KiB/s | 12.3 KiB | 00m00s [137/153] fedora-gpg-keys-0:42-0.1.noar 100% | 6.3 MiB/s | 123.3 KiB | 00m00s [138/153] fedora-repos-rawhide-0:42-0.1 100% | 514.3 KiB/s | 8.7 KiB | 00m00s [139/153] libcurl-0:8.9.1-3.fc42.i686 100% | 14.6 MiB/s | 389.7 KiB | 00m00s [140/153] xxhash-libs-0:0.8.2-3.fc41.i6 100% | 2.4 MiB/s | 46.8 KiB | 00m00s [141/153] libidn2-0:2.3.7-2.fc41.i686 100% | 5.8 MiB/s | 113.0 KiB | 00m00s [142/153] libbrotli-0:1.1.0-5.fc41.i686 100% | 12.7 MiB/s | 339.4 KiB | 00m00s [143/153] libnghttp2-0:1.63.0-1.fc42.i6 100% | 4.5 MiB/s | 82.3 KiB | 00m00s [144/153] libpsl-0:0.21.5-4.fc41.i686 100% | 3.5 MiB/s | 64.7 KiB | 00m00s [145/153] libssh-0:0.11.1-1.fc42.i686 100% | 12.2 MiB/s | 250.0 KiB | 00m00s [146/153] openldap-0:2.6.8-5.fc41.i686 100% | 13.3 MiB/s | 272.3 KiB | 00m00s [147/153] libevent-0:2.1.12-14.fc41.i68 100% | 11.3 MiB/s | 277.0 KiB | 00m00s [148/153] libtool-ltdl-0:2.4.7-12.fc41. 100% | 1.7 MiB/s | 37.7 KiB | 00m00s [149/153] gdb-minimal-0:15.1-1.fc42.i68 100% | 30.5 MiB/s | 4.7 MiB | 00m00s [150/153] libssh-config-0:0.11.1-1.fc42 100% | 494.0 KiB/s | 9.4 KiB | 00m00s [151/153] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 10.8 MiB/s | 860.0 KiB | 00m00s [152/153] publicsuffix-list-dafsa-0:202 100% | 3.2 MiB/s | 58.3 KiB | 00m00s [153/153] libunistring-0:1.1-8.fc41.i68 100% | 15.0 MiB/s | 553.3 KiB | 00m00s -------------------------------------------------------------------------------- [153/153] Total 100% | 35.9 MiB/s | 53.4 MiB | 00m01s Running transaction [ 1/155] Verify package files 100% | 761.0 B/s | 153.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-23.fc41.i686 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-23.fc41.i686 [ 2/155] Prepare transaction 100% | 1.9 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:14.2.1-1. 100% | 8.2 MiB/s | 303.4 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.2.1-1.fc42.i686 >>> Stop post-install scriptlet: libgcc-0:14.2.1-1.fc42.i686 [ 4/155] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 5/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/155] Installing fedora-release-ide 100% | 929.7 KiB/s | 952.0 B | 00m00s [ 7/155] Installing fedora-gpg-keys-0: 100% | 18.7 MiB/s | 172.2 KiB | 00m00s [ 8/155] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 9/155] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/155] Installing fedora-release-com 100% | 11.6 MiB/s | 23.7 KiB | 00m00s [ 11/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/155] Installing setup-0:2.15.0-5.f 100% | 39.4 MiB/s | 726.1 KiB | 00m00s >>> Running post-install scriptlet: setup-0:2.15.0-5.fc41.noarch >>> Stop post-install scriptlet: setup-0:2.15.0-5.fc41.noarch [ 13/155] Installing filesystem-0:3.18- 100% | 1.3 MiB/s | 212.0 KiB | 00m00s [ 14/155] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 15/155] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB | 00m00s [ 16/155] Installing coreutils-common-0 100% | 75.6 MiB/s | 11.2 MiB | 00m00s [ 17/155] Installing ncurses-base-0:6.5 100% | 34.3 MiB/s | 351.7 KiB | 00m00s [ 18/155] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 19/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [ 20/155] Installing qt6-srpm-macros-0: 100% | 357.4 KiB/s | 732.0 B | 00m00s [ 21/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [ 22/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [ 23/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [ 24/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [ 25/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [ 26/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [ 27/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [ 28/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 29/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [ 30/155] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [ 31/155] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 32/155] Installing ncurses-libs-0:6.5 100% | 56.2 MiB/s | 977.6 KiB | 00m00s >>> Running pre-install scriptlet: glibc-0:2.40.9000-1.fc42.i686 >>> Stop pre-install scriptlet: glibc-0:2.40.9000-1.fc42.i686 warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 33/155] Installing glibc-0:2.40.9000- 100% | 35.7 MiB/s | 5.5 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.40.9000-1.fc42.i686 >>> Stop post-install scriptlet: glibc-0:2.40.9000-1.fc42.i686 [ 34/155] Installing bash-0:5.2.32-2.fc 100% | 102.5 MiB/s | 8.3 MiB | 00m00s >>> Running post-install scriptlet: bash-0:5.2.32-2.fc42.i686 >>> Stop post-install scriptlet: bash-0:5.2.32-2.fc42.i686 [ 35/155] Installing glibc-common-0:2.4 100% | 49.8 MiB/s | 1.0 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 36/155] Installing glibc-gconv-extra- 100% | 57.4 MiB/s | 7.8 MiB | 00m00s >>> Running post-install scriptlet: glibc-gconv-extra-0:2.40.9000-1.fc42.i686 >>> Stop post-install scriptlet: glibc-gconv-extra-0:2.40.9000-1.fc42.i686 [ 37/155] Installing zlib-ng-compat-0:2 100% | 146.7 MiB/s | 150.2 KiB | 00m00s [ 38/155] Installing xz-libs-1:5.6.2-2. 100% | 75.1 MiB/s | 230.9 KiB | 00m00s [ 39/155] Installing bzip2-libs-0:1.0.8 100% | 75.3 MiB/s | 77.1 KiB | 00m00s [ 40/155] Installing libuuid-0:2.40.2-8 100% | 40.8 MiB/s | 41.8 KiB | 00m00s [ 41/155] Installing readline-0:8.2-11. 100% | 152.2 MiB/s | 467.6 KiB | 00m00s [ 42/155] Installing popt-0:1.19-7.fc41 100% | 27.8 MiB/s | 142.6 KiB | 00m00s [ 43/155] Installing libblkid-0:2.40.2- 100% | 139.9 MiB/s | 286.6 KiB | 00m00s [ 44/155] Installing libattr-0:2.5.2-4. 100% | 2.2 MiB/s | 24.7 KiB | 00m00s [ 45/155] Installing libacl-0:2.3.2-2.f 100% | 39.2 MiB/s | 40.1 KiB | 00m00s [ 46/155] Installing libxcrypt-0:4.4.36 100% | 137.2 MiB/s | 280.9 KiB | 00m00s [ 47/155] Installing libzstd-0:1.5.6-2. 100% | 177.8 MiB/s | 728.4 KiB | 00m00s [ 48/155] Installing elfutils-libelf-0: 100% | 130.7 MiB/s | 1.2 MiB | 00m00s [ 49/155] Installing gmp-1:6.3.0-2.fc41 100% | 180.8 MiB/s | 740.7 KiB | 00m00s [ 50/155] Installing libstdc++-0:14.2.1 100% | 147.8 MiB/s | 2.8 MiB | 00m00s [ 51/155] Installing libeconf-0:0.6.2-3 100% | 61.4 MiB/s | 62.9 KiB | 00m00s [ 52/155] Installing gdbm-libs-1:1.23-7 100% | 8.8 MiB/s | 126.3 KiB | 00m00s >>> Running pre-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42. >>> Stop pre-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.noa [ 53/155] Installing crypto-policies-0: 100% | 10.0 MiB/s | 163.2 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42 >>> Stop post-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.no [ 54/155] Installing mpfr-0:4.2.1-5.fc4 100% | 189.1 MiB/s | 968.2 KiB | 00m00s [ 55/155] Installing gawk-0:5.3.0-4.fc4 100% | 75.3 MiB/s | 1.7 MiB | 00m00s [ 56/155] Installing dwz-0:0.15-7.fc41. 100% | 161.3 MiB/s | 330.3 KiB | 00m00s [ 57/155] Installing unzip-0:6.0-64.fc4 100% | 65.1 MiB/s | 399.8 KiB | 00m00s [ 58/155] Installing file-libs-0:5.45-7 100% | 180.8 MiB/s | 9.9 MiB | 00m00s [ 59/155] Installing file-0:5.45-7.fc41 100% | 93.8 MiB/s | 96.0 KiB | 00m00s [ 60/155] Installing libcap-ng-0:0.8.5- 100% | 67.9 MiB/s | 69.5 KiB | 00m00s [ 61/155] Installing audit-libs-0:4.0.2 100% | 112.0 MiB/s | 343.9 KiB | 00m00s [ 62/155] Installing pam-libs-0:1.6.1-6 100% | 9.4 MiB/s | 134.9 KiB | 00m00s [ 63/155] Installing libcap-0:2.70-4.fc 100% | 51.3 MiB/s | 210.0 KiB | 00m00s [ 64/155] Installing systemd-libs-0:256 100% | 106.4 MiB/s | 2.0 MiB | 00m00s [ 65/155] Installing libsmartcols-0:2.4 100% | 180.5 MiB/s | 184.8 KiB | 00m00s [ 66/155] Installing libcom_err-0:1.47. 100% | 58.2 MiB/s | 59.6 KiB | 00m00s [ 67/155] Installing libsepol-0:3.7-2.f 100% | 23.1 MiB/s | 874.4 KiB | 00m00s [ 68/155] Installing pcre2-0:10.44-1.fc 100% | 215.3 MiB/s | 661.5 KiB | 00m00s [ 69/155] Installing libselinux-0:3.7-5 100% | 94.5 MiB/s | 193.5 KiB | 00m00s [ 70/155] Installing sed-0:4.9-3.fc41.i 100% | 35.4 MiB/s | 868.8 KiB | 00m00s [ 71/155] Installing grep-0:3.11-9.fc41 100% | 71.9 MiB/s | 1.0 MiB | 00m00s [ 72/155] Installing findutils-1:4.10.0 100% | 57.0 MiB/s | 1.9 MiB | 00m00s [ 73/155] Installing xz-1:5.6.2-2.fc41. 100% | 86.2 MiB/s | 1.2 MiB | 00m00s [ 74/155] Installing libmount-0:2.40.2- 100% | 189.4 MiB/s | 388.0 KiB | 00m00s [ 75/155] Installing lz4-libs-0:1.10.0- 100% | 142.4 MiB/s | 145.9 KiB | 00m00s [ 76/155] Installing alternatives-0:1.3 100% | 65.4 MiB/s | 67.0 KiB | 00m00s [ 77/155] Installing lua-libs-0:5.4.6-6 100% | 151.3 MiB/s | 309.8 KiB | 00m00s [ 78/155] Installing libtasn1-0:4.19.0- 100% | 58.9 MiB/s | 180.8 KiB | 00m00s [ 79/155] Installing libunistring-0:1.1 100% | 102.0 MiB/s | 1.7 MiB | 00m00s [ 80/155] Installing elfutils-default-y 100% | 185.7 KiB/s | 2.0 KiB | 00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.noar [ 81/155] Installing elfutils-libs-0:0. 100% | 85.8 MiB/s | 702.6 KiB | 00m00s [ 82/155] Installing libidn2-0:2.3.7-2. 100% | 64.5 MiB/s | 330.3 KiB | 00m00s [ 83/155] Installing libpsl-0:0.21.5-4. 100% | 37.6 MiB/s | 76.9 KiB | 00m00s [ 84/155] Installing zstd-0:1.5.6-2.fc4 100% | 52.1 MiB/s | 1.6 MiB | 00m00s [ 85/155] Installing util-linux-core-0: 100% | 62.9 MiB/s | 1.4 MiB | 00m00s [ 86/155] Installing tar-2:1.35-4.fc41. 100% | 111.1 MiB/s | 3.0 MiB | 00m00s [ 87/155] Installing libsemanage-0:3.7- 100% | 99.6 MiB/s | 305.9 KiB | 00m00s [ 88/155] Installing shadow-utils-2:4.1 100% | 71.5 MiB/s | 4.1 MiB | 00m00s [ 89/155] Installing zip-0:3.0-41.fc41. 100% | 138.9 MiB/s | 711.0 KiB | 00m00s [ 90/155] Installing gdbm-1:1.23-7.fc41 100% | 24.7 MiB/s | 454.7 KiB | 00m00s [ 91/155] Installing cyrus-sasl-lib-0:2 100% | 39.4 MiB/s | 2.5 MiB | 00m00s [ 92/155] Installing libfdisk-0:2.40.2- 100% | 200.9 MiB/s | 411.5 KiB | 00m00s [ 93/155] Installing bzip2-0:1.0.8-19.f 100% | 6.9 MiB/s | 98.4 KiB | 00m00s [ 94/155] Installing libxml2-0:2.12.8-2 100% | 62.4 MiB/s | 1.8 MiB | 00m00s [ 95/155] Installing add-determinism-0: 100% | 44.1 MiB/s | 2.1 MiB | 00m00s [ 96/155] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 97/155] Installing sqlite-libs-0:3.46 100% | 150.0 MiB/s | 1.5 MiB | 00m00s [ 98/155] Installing ed-0:1.20.2-2.fc41 100% | 70.3 MiB/s | 144.0 KiB | 00m00s [ 99/155] Installing patch-0:2.7.6-25.f 100% | 146.2 MiB/s | 299.5 KiB | 00m00s [100/155] Installing cpio-0:2.15-2.fc41 100% | 100.5 MiB/s | 1.1 MiB | 00m00s [101/155] Installing diffutils-0:3.10-8 100% | 61.3 MiB/s | 1.6 MiB | 00m00s [102/155] Installing libpkgconf-0:2.3.0 100% | 79.9 MiB/s | 81.8 KiB | 00m00s [103/155] Installing pkgconf-0:2.3.0-1. 100% | 43.7 MiB/s | 89.5 KiB | 00m00s [104/155] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [105/155] Installing keyutils-libs-0:1. 100% | 57.7 MiB/s | 59.1 KiB | 00m00s [106/155] Installing libverto-0:0.3.2-9 100% | 29.8 MiB/s | 30.6 KiB | 00m00s [107/155] Installing jansson-0:2.13.1-1 100% | 86.9 MiB/s | 89.0 KiB | 00m00s [108/155] Installing libgomp-0:14.2.1-1 100% | 56.8 MiB/s | 523.9 KiB | 00m00s [109/155] Installing libffi-0:3.4.6-3.f 100% | 81.0 MiB/s | 82.9 KiB | 00m00s [110/155] Installing p11-kit-0:0.25.5-3 100% | 93.3 MiB/s | 2.3 MiB | 00m00s [111/155] Installing p11-kit-trust-0:0. 100% | 15.4 MiB/s | 363.2 KiB | 00m00s >>> Running post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.i686 >>> Stop post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.i686 [112/155] Installing openssl-libs-1:3.2 100% | 179.0 MiB/s | 6.3 MiB | 00m00s [113/155] Installing coreutils-0:9.5-9. 100% | 81.5 MiB/s | 5.7 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.n >>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar [114/155] Installing ca-certificates-0: 100% | 1.6 MiB/s | 2.4 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41. >>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noa [115/155] Installing krb5-libs-0:1.21.3 100% | 179.7 MiB/s | 2.3 MiB | 00m00s [116/155] Installing libarchive-0:3.7.4 100% | 194.6 MiB/s | 996.4 KiB | 00m00s [117/155] Installing libtirpc-0:1.3.5-0 100% | 105.3 MiB/s | 215.6 KiB | 00m00s [118/155] Installing gzip-0:1.13-2.fc41 100% | 96.1 MiB/s | 393.6 KiB | 00m00s [119/155] Installing authselect-libs-0: 100% | 81.7 MiB/s | 836.4 KiB | 00m00s [120/155] Installing cracklib-0:2.9.11- 100% | 34.5 MiB/s | 247.1 KiB | 00m00s [121/155] Installing libpwquality-0:1.4 100% | 45.9 MiB/s | 423.0 KiB | 00m00s [122/155] Installing libnsl2-0:2.0.1-2. 100% | 56.9 MiB/s | 58.3 KiB | 00m00s [123/155] Installing pam-0:1.6.1-6.fc42 100% | 72.4 MiB/s | 1.8 MiB | 00m00s [124/155] Installing libssh-0:0.11.1-1. 100% | 149.8 MiB/s | 613.7 KiB | 00m00s [125/155] Installing rpm-sequoia-0:1.7. 100% | 175.1 MiB/s | 2.6 MiB | 00m00s [126/155] Installing rpm-libs-0:4.19.93 100% | 149.7 MiB/s | 766.4 KiB | 00m00s [127/155] Installing rpm-build-libs-0:4 100% | 205.3 MiB/s | 210.2 KiB | 00m00s [128/155] Installing libevent-0:2.1.12- 100% | 54.9 MiB/s | 955.9 KiB | 00m00s [129/155] Installing xxhash-libs-0:0.8. 100% | 114.5 MiB/s | 117.3 KiB | 00m00s [130/155] Installing libbrotli-0:1.1.0- 100% | 168.3 MiB/s | 861.8 KiB | 00m00s [131/155] Installing libnghttp2-0:1.63. 100% | 7.1 MiB/s | 174.6 KiB | 00m00s [132/155] Installing libtool-ltdl-0:2.4 100% | 68.9 MiB/s | 70.6 KiB | 00m00s [133/155] Installing openldap-0:2.6.8-5 100% | 133.1 MiB/s | 681.5 KiB | 00m00s [134/155] Installing libcurl-0:8.9.1-3. 100% | 46.0 MiB/s | 847.2 KiB | 00m00s [135/155] Installing elfutils-debuginfo 100% | 28.0 MiB/s | 57.3 KiB | 00m00s [136/155] Installing binutils-0:2.43.1- 100% | 100.1 MiB/s | 25.4 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.43.1-1.fc42.i686 >>> Stop post-install scriptlet: binutils-0:2.43.1-1.fc42.i686 [137/155] Installing elfutils-0:0.191-8 100% | 211.7 MiB/s | 2.5 MiB | 00m00s [138/155] Installing gdb-minimal-0:15.1 100% | 152.8 MiB/s | 13.6 MiB | 00m00s [139/155] Installing debugedit-0:5.0-17 100% | 13.6 MiB/s | 195.6 KiB | 00m00s [140/155] Installing curl-0:8.9.1-3.fc4 100% | 37.3 MiB/s | 801.9 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.93-1.fc42.i686 >>> Stop pre-install scriptlet: rpm-0:4.19.93-1.fc42.i686 [141/155] Installing rpm-0:4.19.93-1.fc 100% | 40.7 MiB/s | 2.5 MiB | 00m00s [142/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [143/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [144/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [145/155] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.4 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [148/155] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [149/155] Installing redhat-rpm-config- 100% | 5.1 MiB/s | 192.9 KiB | 00m00s [150/155] Installing rpm-build-0:4.19.9 100% | 36.5 MiB/s | 186.8 KiB | 00m00s [151/155] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [152/155] Installing util-linux-0:2.40. 100% | 34.2 MiB/s | 3.6 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-8.fc42.i686 >>> Stop post-install scriptlet: util-linux-0:2.40.2-8.fc42.i686 [153/155] Installing authselect-0:1.5.0 100% | 40.3 MiB/s | 165.0 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 39.6 MiB/s | 81.1 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [155/155] Installing info-0:7.1-3.fc41. 100% | 200.9 KiB/s | 360.8 KiB | 00m02s >>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.i686 >>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.i686 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.i686 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.i686 >>> Running post-transaction scriptlet: rpm-0:4.19.93-1.fc42.i686 >>> Stop post-transaction scriptlet: rpm-0:4.19.93-1.fc42.i686 >>> Running trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.i686 >>> Stop trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.i686 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.i686 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.i686 Complete! Warning: skipped PGP checks for 153 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.i686 alternatives-1.30-1.fc41.i686 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.i686 authselect-1.5.0-7.fc41.i686 authselect-libs-1.5.0-7.fc41.i686 basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.i686 binutils-2.43.1-1.fc42.i686 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.i686 bzip2-libs-1.0.8-19.fc41.i686 ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch coreutils-9.5-9.fc42.i686 coreutils-common-9.5-9.fc42.i686 cpio-2.15-2.fc41.i686 cracklib-2.9.11-6.fc41.i686 crypto-policies-20240828-1.git5f66e81.fc42.noarch curl-8.9.1-3.fc42.i686 cyrus-sasl-lib-2.1.28-27.fc41.i686 debugedit-5.0-17.fc41.i686 diffutils-3.10-8.fc41.i686 dwz-0.15-7.fc41.i686 ed-1.20.2-2.fc41.i686 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.i686 elfutils-debuginfod-client-0.191-8.fc41.i686 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.i686 elfutils-libs-0.191-8.fc41.i686 fedora-gpg-keys-42-0.1.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.1.noarch fedora-repos-rawhide-42-0.1.noarch file-5.45-7.fc41.i686 file-libs-5.45-7.fc41.i686 filesystem-3.18-23.fc41.i686 findutils-4.10.0-4.fc41.i686 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.i686 gdb-minimal-15.1-1.fc42.i686 gdbm-1.23-7.fc41.i686 gdbm-libs-1.23-7.fc41.i686 ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40.9000-1.fc42.i686 glibc-common-2.40.9000-1.fc42.i686 glibc-gconv-extra-2.40.9000-1.fc42.i686 glibc-minimal-langpack-2.40.9000-1.fc42.i686 gmp-6.3.0-2.fc41.i686 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch grep-3.11-9.fc41.i686 gzip-1.13-2.fc41.i686 info-7.1-3.fc41.i686 jansson-2.13.1-10.fc41.i686 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.i686 krb5-libs-1.21.3-2.fc41.i686 libacl-2.3.2-2.fc41.i686 libarchive-3.7.4-3.fc41.i686 libattr-2.5.2-4.fc41.i686 libblkid-2.40.2-8.fc42.i686 libbrotli-1.1.0-5.fc41.i686 libcap-2.70-4.fc41.i686 libcap-ng-0.8.5-3.fc41.i686 libcom_err-1.47.1-3.fc41.i686 libcurl-8.9.1-3.fc42.i686 libeconf-0.6.2-3.fc41.i686 libevent-2.1.12-14.fc41.i686 libfdisk-2.40.2-8.fc42.i686 libffi-3.4.6-3.fc42.i686 libgcc-14.2.1-1.fc42.i686 libgomp-14.2.1-1.fc42.i686 libidn2-2.3.7-2.fc41.i686 libmount-2.40.2-8.fc42.i686 libnghttp2-1.63.0-1.fc42.i686 libnsl2-2.0.1-2.fc41.i686 libpkgconf-2.3.0-1.fc42.i686 libpsl-0.21.5-4.fc41.i686 libpwquality-1.4.5-11.fc41.i686 libselinux-3.7-5.fc41.i686 libsemanage-3.7-2.fc41.i686 libsepol-3.7-2.fc41.i686 libsmartcols-2.40.2-8.fc42.i686 libssh-0.11.1-1.fc42.i686 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-1.fc42.i686 libtasn1-4.19.0-9.fc41.i686 libtirpc-1.3.5-0.fc41.i686 libtool-ltdl-2.4.7-12.fc41.i686 libunistring-1.1-8.fc41.i686 libuuid-2.40.2-8.fc42.i686 libverto-0.3.2-9.fc41.i686 libxcrypt-4.4.36-7.fc41.i686 libxml2-2.12.8-2.fc41.i686 libzstd-1.5.6-2.fc41.i686 lua-libs-5.4.6-6.fc41.i686 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.i686 mpfr-4.2.1-5.fc41.i686 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.i686 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.i686 openssl-libs-3.2.2-5.fc41.i686 p11-kit-0.25.5-3.fc41.i686 p11-kit-trust-0.25.5-3.fc41.i686 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-6.fc42.i686 pam-libs-1.6.1-6.fc42.i686 patch-2.7.6-25.fc41.i686 pcre2-10.44-1.fc41.1.i686 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.i686 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.i686 popt-1.19-7.fc41.i686 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.14.0-1.fc41.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-11.fc42.i686 redhat-rpm-config-294-1.fc42.noarch rpm-4.19.93-1.fc42.i686 rpm-build-4.19.93-1.fc42.i686 rpm-build-libs-4.19.93-1.fc42.i686 rpm-libs-4.19.93-1.fc42.i686 rpm-sequoia-1.7.0-2.fc41.i686 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.i686 setup-2.15.0-5.fc41.noarch shadow-utils-4.15.1-9.fc41.i686 sqlite-libs-3.46.0-4.fc41.i686 systemd-libs-256.5-1.fc42.i686 tar-1.35-4.fc41.i686 unzip-6.0-64.fc41.i686 util-linux-2.40.2-8.fc42.i686 util-linux-core-2.40.2-8.fc42.i686 which-2.21-42.fc41.i686 xxhash-libs-0.8.2-3.fc41.i686 xz-5.6.2-2.fc41.i686 xz-libs-5.6.2-2.fc41.i686 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.i686 zlib-ng-compat-2.1.7-2.fc41.i686 zstd-1.5.6-2.fc41.i686 Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1725580800 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-7.fc42.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-i686-1725633524.351470/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1725633524.351470/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-z7xe0xez/ProDy/ProDy.spec) Config(child) 0 minutes 37 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-7.fc42.src.rpm) Config(fedora-rawhide-i686) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1725633524.351470/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1725633524.351470/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1725633524.351470/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-6.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.5.0-2.fc41.x86_64 dnf5-plugins-5.2.5.0-2.fc41.x86_64 Finish: chroot init Start: build phase for ProDy-2.4.1-7.fc42.src.rpm Start: build setup for ProDy-2.4.1-7.fc42.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1725580800 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-7.fc42.src.rpm Updating and loading repositories: Copr repository 100% | 43.9 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 69.6 KiB/s | 3.8 KiB | 00m00s local 100% | 76.0 KiB/s | 3.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: gcc i686 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101.7 MiB gcc-c++ i686 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38.9 MiB python3-biopython i686 1.84-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30.0 MiB python3-devel i686 3.13.0~rc1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB python3-matplotlib i686 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21.1 MiB python3-nose noarch 1.3.7-59.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB python3-numpy i686 1:1.26.4-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36.6 MiB python3-scipy i686 1.11.3-15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64.6 MiB python3-setuptools noarch 69.2.0-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 MiB python3-urllib3 noarch 1.26.19-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.7 KiB annobin-docs noarch 12.70-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 97.7 KiB annobin-plugin-gcc i686 12.70-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 984.6 KiB cairo i686 1.18.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB cpp i686 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.6 MiB default-fonts-core-sans noarch 4.1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.9 KiB dejavu-sans-fonts noarch 2.37-24.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.5 MiB expat i686 2.6.3-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 294.0 KiB flex i686 2.6.4-18.fc41 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 314.8 KiB python3-contourpy i686 1.3.0-1.fc42 copr_base 807.5 KiB python3-cycler noarch 0.11.0-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.6 KiB python3-dateutil noarch 1:2.8.2-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 879.2 KiB python3-fonttools i686 4.53.1-2.fc42 copr_base 18.3 MiB python3-fs noarch 2.4.16-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 MiB python3-idna noarch 3.8-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 596.4 KiB python3-kiwisolver i686 1.4.7-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 159.9 KiB python3-libs i686 3.13.0~rc1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.0 MiB python3-lxml i686 5.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.2 MiB python3-matplotlib-data noarch 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 741.5 KiB python3-matplotlib-data-fonts noarch 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.9 MiB python3-matplotlib-tk i686 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 249.7 KiB python3-numpy-f2py i686 1:1.26.4-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB python3-olefile noarch 0.47-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 340.4 KiB python3-packaging noarch 24.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 422.3 KiB python3-pillow i686 10.4.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.7 MiB python3-pillow-tk i686 10.4.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB python3-platformdirs noarch 4.2.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 168.6 KiB python3-pooch noarch 1.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 625.5 KiB python3-pyparsing noarch 3.1.2-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB python3-requests noarch 2.32.3-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 485.9 KiB python3-rpm-generators noarch 14-11.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.4 KiB python3-six noarch 1.16.0-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 118.3 KiB python3-tkinter i686 3.13.0~rc1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB tcl i686 1:8.6.14-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.3 MiB tk i686 1:8.6.14-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.7 MiB tzdata noarch 2024a-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB xml-common noarch 0.6.3-65.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB Transaction Summary: Installing: 108 packages Total size of inbound packages is 159 MiB. Need to download 159 MiB. After this operation 552 MiB will be used (install 552 MiB, remove 0 B). [ 1/108] python3-biopython-0:1.84-3.fc 100% | 31.1 MiB/s | 11.6 MiB | 00m00s [ 2/108] python3-devel-0:3.13.0~rc1-3. 100% | 11.2 MiB/s | 356.5 KiB | 00m00s [ 3/108] python3-matplotlib-0:3.9.1-2. 100% | 31.0 MiB/s | 4.5 MiB | 00m00s [ 4/108] python3-nose-0:1.3.7-59.fc41. 100% | 11.4 MiB/s | 327.2 KiB | 00m00s [ 5/108] python3-numpy-1:1.26.4-8.fc41 100% | 29.1 MiB/s | 6.9 MiB | 00m00s [ 6/108] python3-scipy-0:1.11.3-15.fc4 100% | 29.2 MiB/s | 16.1 MiB | 00m01s [ 7/108] python3-setuptools-0:69.2.0-8 100% | 24.6 MiB/s | 1.4 MiB | 00m00s [ 8/108] gcc-0:14.2.1-1.fc42.i686 100% | 24.7 MiB/s | 36.8 MiB | 00m01s [ 9/108] python3-urllib3-0:1.26.19-2.f 100% | 4.5 MiB/s | 259.0 KiB | 00m00s [ 10/108] python3-0:3.13.0~rc1-3.fc42.i 100% | 1.6 MiB/s | 27.3 KiB | 00m00s [ 11/108] python3-idna-0:3.8-1.fc42.noa 100% | 5.4 MiB/s | 110.5 KiB | 00m00s [ 12/108] python3-numpy-f2py-1:1.26.4-8 100% | 2.4 MiB/s | 439.1 KiB | 00m00s [ 13/108] libgfortran-0:14.2.1-1.fc42.i 100% | 18.5 MiB/s | 852.2 KiB | 00m00s [ 14/108] python3-pooch-0:1.8.2-3.fc41. 100% | 3.9 MiB/s | 126.4 KiB | 00m00s [ 15/108] python3-packaging-0:24.1-2.fc 100% | 6.3 MiB/s | 116.2 KiB | 00m00s [ 16/108] python3-platformdirs-0:4.2.2- 100% | 2.4 MiB/s | 41.0 KiB | 00m00s [ 17/108] python3-requests-0:2.32.3-3.f 100% | 6.9 MiB/s | 149.0 KiB | 00m00s [ 18/108] python3-contourpy-0:1.3.0-1.f 100% | 1.1 MiB/s | 271.3 KiB | 00m00s [ 19/108] flexiblas-netlib-0:3.4.4-3.fc 100% | 5.1 MiB/s | 3.2 MiB | 00m01s [ 20/108] dejavu-sans-fonts-0:2.37-24.f 100% | 18.4 MiB/s | 1.3 MiB | 00m00s [ 21/108] freetype-0:2.13.2-6.fc41.i686 100% | 14.7 MiB/s | 420.5 KiB | 00m00s [ 22/108] python3-fonttools-0:4.53.1-2. 100% | 13.8 MiB/s | 2.9 MiB | 00m00s [ 23/108] libqhull_r-1:8.0.2-5.fc41.i68 100% | 6.0 MiB/s | 215.7 KiB | 00m00s [ 24/108] python3-cairo-0:1.25.1-5.fc41 100% | 7.0 MiB/s | 129.4 KiB | 00m00s [ 25/108] python3-cycler-0:0.11.0-13.fc 100% | 1.1 MiB/s | 21.3 KiB | 00m00s [ 26/108] python3-dateutil-1:2.8.2-16.f 100% | 11.8 MiB/s | 349.0 KiB | 00m00s [ 27/108] python3-kiwisolver-0:1.4.7-1. 100% | 2.7 MiB/s | 72.8 KiB | 00m00s [ 28/108] python3-matplotlib-tk-0:3.9.1 100% | 6.5 MiB/s | 113.2 KiB | 00m00s [ 29/108] python3-matplotlib-data-0:3.9 100% | 15.1 MiB/s | 508.9 KiB | 00m00s [ 30/108] python3-pillow-0:10.4.0-2.fc4 100% | 22.6 MiB/s | 948.9 KiB | 00m00s [ 31/108] python3-pyparsing-0:3.1.2-7.f 100% | 9.1 MiB/s | 270.3 KiB | 00m00s [ 32/108] python-rpm-macros-0:3.13-3.fc 100% | 981.6 KiB/s | 17.7 KiB | 00m00s [ 33/108] pyproject-rpm-macros-0:1.14.0 100% | 2.2 MiB/s | 42.6 KiB | 00m00s [ 34/108] python3-rpm-macros-0:3.13-3.f 100% | 732.0 KiB/s | 12.4 KiB | 00m00s [ 35/108] python3-rpm-generators-0:14-1 100% | 1.6 MiB/s | 29.3 KiB | 00m00s [ 36/108] python3-six-0:1.16.0-23.fc41. 100% | 1.9 MiB/s | 41.2 KiB | 00m00s [ 37/108] tzdata-0:2024a-9.fc41.noarch 100% | 14.0 MiB/s | 430.6 KiB | 00m00s [ 38/108] gcc-c++-0:14.2.1-1.fc42.i686 100% | 5.7 MiB/s | 14.3 MiB | 00m03s [ 39/108] cairo-0:1.18.0-4.fc41.i686 100% | 14.2 MiB/s | 757.2 KiB | 00m00s [ 40/108] libmpc-0:1.3.1-6.fc41.i686 100% | 4.2 MiB/s | 77.7 KiB | 00m00s [ 41/108] flex-0:2.6.4-18.fc41.i686 100% | 5.8 MiB/s | 284.9 KiB | 00m00s [ 42/108] libstdc++-devel-0:14.2.1-1.fc 100% | 25.8 MiB/s | 2.6 MiB | 00m00s [ 43/108] gcc-plugin-annobin-0:14.2.1-1 100% | 2.8 MiB/s | 54.5 KiB | 00m00s [ 44/108] annobin-plugin-gcc-0:12.70-1. 100% | 9.7 MiB/s | 972.3 KiB | 00m00s [ 45/108] glibc-devel-0:2.40.9000-1.fc4 100% | 6.4 MiB/s | 132.0 KiB | 00m00s [ 46/108] libasan-0:14.2.1-1.fc42.i686 100% | 12.7 MiB/s | 532.2 KiB | 00m00s [ 47/108] libatomic-0:14.2.1-1.fc42.i68 100% | 2.0 MiB/s | 39.1 KiB | 00m00s [ 48/108] libubsan-0:14.2.1-1.fc42.i686 100% | 11.0 MiB/s | 247.2 KiB | 00m00s [ 49/108] make-1:4.4.1-8.fc41.i686 100% | 13.4 MiB/s | 589.1 KiB | 00m00s [ 50/108] python3-libs-0:3.13.0~rc1-3.f 100% | 21.7 MiB/s | 8.9 MiB | 00m00s [ 51/108] libpng-2:1.6.40-4.fc41.i686 100% | 6.3 MiB/s | 128.7 KiB | 00m00s [ 52/108] harfbuzz-0:9.0.0-3.fc42.i686 100% | 18.1 MiB/s | 1.0 MiB | 00m00s [ 53/108] m4-0:1.4.19-10.fc41.i686 100% | 11.0 MiB/s | 303.4 KiB | 00m00s [ 54/108] fonts-filesystem-1:2.0.5-17.f 100% | 499.0 KiB/s | 8.5 KiB | 00m00s [ 55/108] fontconfig-0:2.15.0-8.fc41.i6 100% | 12.3 MiB/s | 265.0 KiB | 00m00s [ 56/108] libXext-0:1.3.6-2.fc41.i686 100% | 2.2 MiB/s | 42.2 KiB | 00m00s [ 57/108] libX11-0:1.8.10-2.fc42.i686 100% | 16.5 MiB/s | 673.8 KiB | 00m00s [ 58/108] libXrender-0:0.9.11-7.fc41.i6 100% | 1.6 MiB/s | 29.3 KiB | 00m00s [ 59/108] libxcb-0:1.17.0-2.fc41.i686 100% | 9.1 MiB/s | 252.7 KiB | 00m00s [ 60/108] pixman-0:0.43.4-2.fc41.i686 100% | 10.6 MiB/s | 304.1 KiB | 00m00s [ 61/108] annobin-docs-0:12.70-1.fc42.n 100% | 5.0 MiB/s | 92.0 KiB | 00m00s [ 62/108] python3-brotli-0:1.1.0-5.fc41 100% | 12.4 MiB/s | 342.0 KiB | 00m00s [ 63/108] python3-fs-0:2.4.16-9.fc41.no 100% | 9.8 MiB/s | 280.1 KiB | 00m00s [ 64/108] flexiblas-0:3.4.4-3.fc41.i686 100% | 2.1 MiB/s | 25.7 KiB | 00m00s [ 65/108] flexiblas-openblas-openmp-0:3 100% | 1.2 MiB/s | 17.8 KiB | 00m00s [ 66/108] python3-lxml-0:5.3.0-1.fc42.i 100% | 19.1 MiB/s | 1.4 MiB | 00m00s [ 67/108] libquadmath-0:14.2.1-1.fc42.i 100% | 6.4 MiB/s | 250.2 KiB | 00m00s [ 68/108] python3-charset-normalizer-0: 100% | 5.1 MiB/s | 99.3 KiB | 00m00s [ 69/108] lcms2-0:2.16-4.fc41.i686 100% | 9.6 MiB/s | 197.6 KiB | 00m00s [ 70/108] libimagequant-0:4.0.3-5.fc41. 100% | 11.6 MiB/s | 322.1 KiB | 00m00s [ 71/108] libjpeg-turbo-0:3.0.2-3.fc41. 100% | 12.6 MiB/s | 257.2 KiB | 00m00s [ 72/108] libraqm-0:0.8.0-8.fc41.i686 100% | 1.1 MiB/s | 20.3 KiB | 00m00s [ 73/108] libtiff-0:4.6.0-6.fc42.i686 100% | 11.9 MiB/s | 231.0 KiB | 00m00s [ 74/108] openjpeg-0:2.5.2-4.fc42.i686 100% | 9.9 MiB/s | 202.2 KiB | 00m00s [ 75/108] libwebp-0:1.4.0-4.fc41.i686 100% | 3.4 MiB/s | 300.6 KiB | 00m00s [ 76/108] python3-olefile-0:0.47-5.fc41 100% | 1.0 MiB/s | 74.6 KiB | 00m00s [ 77/108] python3-pillow-tk-0:10.4.0-2. 100% | 1.8 MiB/s | 30.7 KiB | 00m00s [ 78/108] python3-tkinter-0:3.13.0~rc1- 100% | 13.9 MiB/s | 356.8 KiB | 00m00s [ 79/108] libxslt-0:1.1.42-2.fc41.i686 100% | 6.0 MiB/s | 201.3 KiB | 00m00s [ 80/108] expat-0:2.6.3-1.fc42.i686 100% | 5.5 MiB/s | 118.5 KiB | 00m00s [ 81/108] libb2-0:0.98.1-12.fc41.i686 100% | 1.5 MiB/s | 28.8 KiB | 00m00s [ 82/108] python3-matplotlib-data-fonts 100% | 20.6 MiB/s | 2.3 MiB | 00m00s [ 83/108] mpdecimal-0:2.5.1-16.fc41.i68 100% | 4.3 MiB/s | 91.9 KiB | 00m00s [ 84/108] python3-appdirs-0:1.4.4-24.fc 100% | 344.4 KiB/s | 23.4 KiB | 00m00s [ 85/108] libXau-0:1.0.11-7.fc41.i686 100% | 1.6 MiB/s | 32.4 KiB | 00m00s [ 86/108] python-pip-wheel-0:24.2-1.fc4 100% | 11.7 MiB/s | 1.2 MiB | 00m00s [ 87/108] jbigkit-libs-0:2.1-30.fc41.i6 100% | 1.1 MiB/s | 53.7 KiB | 00m00s [ 88/108] liblerc-0:4.0.0-7.fc41.i686 100% | 4.5 MiB/s | 218.5 KiB | 00m00s [ 89/108] fribidi-0:1.0.15-2.fc41.i686 100% | 4.8 MiB/s | 92.9 KiB | 00m00s [ 90/108] graphite2-0:1.3.14-16.fc41.i6 100% | 8.6 MiB/s | 97.2 KiB | 00m00s [ 91/108] libX11-common-0:1.8.10-2.fc42 100% | 6.1 MiB/s | 144.8 KiB | 00m00s [ 92/108] cpp-0:14.2.1-1.fc42.i686 100% | 13.0 MiB/s | 12.0 MiB | 00m01s [ 93/108] glibc-headers-x86-0:2.40.9000 100% | 7.0 MiB/s | 552.4 KiB | 00m00s [ 94/108] libxcrypt-devel-0:4.4.36-7.fc 100% | 992.6 KiB/s | 28.8 KiB | 00m00s [ 95/108] glib2-0:2.82.0-1.fc42.i686 100% | 16.8 MiB/s | 3.1 MiB | 00m00s [ 96/108] kernel-headers-0:6.11.0-0.rc6 100% | 12.5 MiB/s | 1.5 MiB | 00m00s [ 97/108] gnutls-0:3.8.7-2.fc42.i686 100% | 9.9 MiB/s | 1.1 MiB | 00m00s [ 98/108] default-fonts-core-sans-0:4.1 100% | 1.3 MiB/s | 24.9 KiB | 00m00s [ 99/108] xml-common-0:0.6.3-65.fc41.no 100% | 1.6 MiB/s | 31.2 KiB | 00m00s [100/108] abattis-cantarell-vf-fonts-0: 100% | 6.2 MiB/s | 120.2 KiB | 00m00s [101/108] google-noto-sans-vf-fonts-0:2 100% | 12.6 MiB/s | 593.9 KiB | 00m00s [102/108] tcl-1:8.6.14-2.fc41.i686 100% | 13.7 MiB/s | 1.1 MiB | 00m00s [103/108] openblas-0:0.3.26-5.fc41.i686 100% | 2.1 MiB/s | 38.7 KiB | 00m00s [104/108] google-noto-fonts-common-0:20 100% | 987.4 KiB/s | 17.8 KiB | 00m00s [105/108] tk-1:8.6.14-2.fc41.i686 100% | 17.8 MiB/s | 1.6 MiB | 00m00s [106/108] libXft-0:2.3.8-7.fc41.i686 100% | 3.3 MiB/s | 73.3 KiB | 00m00s [107/108] nettle-0:3.10-3.fc41.i686 100% | 9.2 MiB/s | 442.4 KiB | 00m00s [108/108] openblas-openmp-0:0.3.26-5.fc 100% | 14.1 MiB/s | 4.0 MiB | 00m00s -------------------------------------------------------------------------------- [108/108] Total 100% | 39.2 MiB/s | 159.0 MiB | 00m04s Running transaction [ 1/110] Verify package files 100% | 203.0 B/s | 108.0 B | 00m01s [ 2/110] Prepare transaction 100% | 654.0 B/s | 108.0 B | 00m00s [ 3/110] Installing fonts-filesystem-1 100% | 77.0 KiB/s | 788.0 B | 00m00s [ 4/110] Installing python-rpm-macros- 100% | 3.7 MiB/s | 22.8 KiB | 00m00s [ 5/110] Installing libmpc-0:1.3.1-6.f 100% | 13.8 MiB/s | 169.6 KiB | 00m00s [ 6/110] Installing libgfortran-0:14.2 100% | 173.1 MiB/s | 2.9 MiB | 00m00s [ 7/110] Installing python3-rpm-macros 100% | 6.5 MiB/s | 6.7 KiB | 00m00s [ 8/110] Installing python3-matplotlib 100% | 79.1 MiB/s | 7.9 MiB | 00m00s [ 9/110] Installing python3-matplotlib 100% | 52.9 MiB/s | 758.7 KiB | 00m00s [ 10/110] Installing tzdata-0:2024a-9.f 100% | 22.6 MiB/s | 1.9 MiB | 00m00s [ 11/110] Installing pyproject-rpm-macr 100% | 52.6 MiB/s | 107.7 KiB | 00m00s [ 12/110] Installing dejavu-sans-fonts- 100% | 125.2 MiB/s | 5.5 MiB | 00m00s [ 13/110] Installing abattis-cantarell- 100% | 94.9 MiB/s | 194.4 KiB | 00m00s [ 14/110] Installing google-noto-fonts- 100% | 17.8 MiB/s | 18.3 KiB | 00m00s [ 15/110] Installing google-noto-sans-v 100% | 62.4 MiB/s | 1.2 MiB | 00m00s [ 16/110] Installing default-fonts-core 100% | 5.9 MiB/s | 18.2 KiB | 00m00s [ 17/110] Installing openblas-0:0.3.26- 100% | 4.2 MiB/s | 97.8 KiB | 00m00s >>> Running pre-install scriptlet: xml-common-0:0.6.3-65.fc41.noarch >>> Stop pre-install scriptlet: xml-common-0:0.6.3-65.fc41.noarch [ 18/110] Installing xml-common-0:0.6.3 100% | 19.8 MiB/s | 81.1 KiB | 00m00s [ 19/110] Installing 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python3-contourpy- 100% | 114.4 MiB/s | 819.9 KiB | 00m00s [ 93/110] Installing pixman-0:0.43.4-2. 100% | 104.7 MiB/s | 750.8 KiB | 00m00s [ 94/110] Installing cairo-0:1.18.0-4.f 100% | 167.0 MiB/s | 1.8 MiB | 00m00s [ 95/110] Installing python3-cairo-0:1. 100% | 119.6 MiB/s | 490.0 KiB | 00m00s [ 96/110] Installing m4-0:1.4.19-10.fc4 100% | 65.4 MiB/s | 602.5 KiB | 00m00s [ 97/110] Installing flex-0:2.6.4-18.fc 100% | 110.7 MiB/s | 793.3 KiB | 00m00s [ 98/110] Installing make-1:4.4.1-8.fc4 100% | 129.8 MiB/s | 1.8 MiB | 00m00s [ 99/110] Installing libubsan-0:14.2.1- 100% | 53.1 MiB/s | 543.4 KiB | 00m00s [100/110] Installing libatomic-0:14.2.1 100% | 27.7 MiB/s | 28.3 KiB | 00m00s [101/110] Installing libasan-0:14.2.1-1 100% | 155.3 MiB/s | 1.7 MiB | 00m00s [102/110] Installing gcc-0:14.2.1-1.fc4 100% | 103.9 MiB/s | 101.8 MiB | 00m01s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch [103/110] Installing libqhull_r-1:8.0.2 100% | 125.9 MiB/s | 515.6 KiB | 00m00s [104/110] Installing python3-nose-0:1.3 100% | 75.1 MiB/s | 1.3 MiB | 00m00s [105/110] Installing python3-matplotlib 100% | 61.6 MiB/s | 252.3 KiB | 00m00s [106/110] Installing python3-matplotlib 100% | 69.3 MiB/s | 21.3 MiB | 00m00s [107/110] Installing gcc-c++-0:14.2.1-1 100% | 142.4 MiB/s | 38.9 MiB | 00m00s [108/110] Installing annobin-plugin-gcc 100% | 35.7 MiB/s | 986.3 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch [109/110] Installing gcc-plugin-annobin 100% | 2.1 MiB/s | 61.4 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [110/110] Installing python3-biopython- 100% | 43.0 MiB/s | 30.3 MiB | 00m01s >>> Running post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.i686 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.i686 >>> Running trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.i686 >>> Stop trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.i686 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.i686 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.i686 >>> Running trigger-install scriptlet: glib2-0:2.82.0-1.fc42.i686 >>> Stop trigger-install scriptlet: glib2-0:2.82.0-1.fc42.i686 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.i686 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.i686 Complete! Warning: skipped PGP checks for 108 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: build setup for ProDy-2.4.1-7.fc42.src.rpm Start: rpmbuild ProDy-2.4.1-7.fc42.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1725580800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.FR9iN8 + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + test -d /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/rm -rf /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.wAB3e6 + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd /builddir/build/BUILD/ProDy-2.4.1-build + rm -rf ProDy-2.4.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ProDy-2.4.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd ProDy-2.4.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/ProDy-change_requires.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find prody/proteins/ccealign -name '*.h' -exec chmod 0644 '{}' ';' + find prody/proteins/ccealign -name '*.cpp' -exec chmod 0644 '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.DGrm2P + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib.linux-i686-cpython-313 creating build/lib.linux-i686-cpython-313/prody copying prody/__init__.py -> build/lib.linux-i686-cpython-313/prody creating build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/__init__.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/acceptor.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/angle.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/atom.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/atomgroup.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/atomic.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/atommap.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/bond.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/chain.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/crossterm.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/dihedral.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/donor.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/fields.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/flags.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/functions.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/hierview.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/improper.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/nbexclusion.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/pointer.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/residue.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/segment.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/select.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/selection.py -> build/lib.linux-i686-cpython-313/prody/atomic copying prody/atomic/subset.py -> build/lib.linux-i686-cpython-313/prody/atomic creating build/lib.linux-i686-cpython-313/prody/database copying prody/database/__init__.py -> build/lib.linux-i686-cpython-313/prody/database copying prody/database/cath.py -> build/lib.linux-i686-cpython-313/prody/database copying prody/database/dali.py -> build/lib.linux-i686-cpython-313/prody/database copying prody/database/goa.py -> build/lib.linux-i686-cpython-313/prody/database copying prody/database/pfam.py -> build/lib.linux-i686-cpython-313/prody/database copying prody/database/quartataweb.py -> build/lib.linux-i686-cpython-313/prody/database copying prody/database/uniprot.py -> build/lib.linux-i686-cpython-313/prody/database creating build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/__init__.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/adaptive.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/analysis.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/anm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/bbenm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/bildfile.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/clustenm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/compare.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/editing.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/entropy.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/essa.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/exanm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/exgnm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/functions.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/gamma.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/gnm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/heatmapper.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/imanm.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/mechstiff.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/mode.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/modeset.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/nma.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/nmdfile.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/pca.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/perturb.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/plotting.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/rtb.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/sampling.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/signature.py -> build/lib.linux-i686-cpython-313/prody/dynamics copying prody/dynamics/vmdfile.py -> build/lib.linux-i686-cpython-313/prody/dynamics creating build/lib.linux-i686-cpython-313/prody/ensemble copying prody/ensemble/__init__.py -> build/lib.linux-i686-cpython-313/prody/ensemble copying prody/ensemble/conformation.py -> build/lib.linux-i686-cpython-313/prody/ensemble copying prody/ensemble/ensemble.py -> build/lib.linux-i686-cpython-313/prody/ensemble copying prody/ensemble/functions.py -> build/lib.linux-i686-cpython-313/prody/ensemble copying prody/ensemble/pdbensemble.py -> build/lib.linux-i686-cpython-313/prody/ensemble creating build/lib.linux-i686-cpython-313/prody/kdtree copying prody/kdtree/__init__.py -> build/lib.linux-i686-cpython-313/prody/kdtree copying prody/kdtree/kdtree.py -> build/lib.linux-i686-cpython-313/prody/kdtree creating build/lib.linux-i686-cpython-313/prody/measure copying prody/measure/__init__.py -> build/lib.linux-i686-cpython-313/prody/measure copying prody/measure/contacts.py -> build/lib.linux-i686-cpython-313/prody/measure copying prody/measure/measure.py -> build/lib.linux-i686-cpython-313/prody/measure copying prody/measure/transform.py -> build/lib.linux-i686-cpython-313/prody/measure creating build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/__init__.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/blastpdb.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/ciffile.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/cifheader.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/compare.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/dssp.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/emdfile.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/fixer.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/functions.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/header.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/localpdb.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/pdbclusters.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/pdbfile.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/starfile.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/stride.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/waterbridges.py -> build/lib.linux-i686-cpython-313/prody/proteins copying prody/proteins/wwpdb.py -> build/lib.linux-i686-cpython-313/prody/proteins creating build/lib.linux-i686-cpython-313/prody/sequence copying prody/sequence/__init__.py -> build/lib.linux-i686-cpython-313/prody/sequence copying prody/sequence/analysis.py -> build/lib.linux-i686-cpython-313/prody/sequence copying prody/sequence/msa.py -> build/lib.linux-i686-cpython-313/prody/sequence copying prody/sequence/msafile.py -> build/lib.linux-i686-cpython-313/prody/sequence copying prody/sequence/plotting.py -> build/lib.linux-i686-cpython-313/prody/sequence copying prody/sequence/sequence.py -> build/lib.linux-i686-cpython-313/prody/sequence creating build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/__init__.py -> build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/dcdfile.py -> build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/frame.py -> build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/psffile.py -> build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/trajbase.py -> build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/trajectory.py -> build/lib.linux-i686-cpython-313/prody/trajectory copying prody/trajectory/trajfile.py -> build/lib.linux-i686-cpython-313/prody/trajectory creating build/lib.linux-i686-cpython-313/prody/chromatin copying prody/chromatin/__init__.py -> build/lib.linux-i686-cpython-313/prody/chromatin copying prody/chromatin/cluster.py -> build/lib.linux-i686-cpython-313/prody/chromatin copying prody/chromatin/functions.py -> build/lib.linux-i686-cpython-313/prody/chromatin copying prody/chromatin/hic.py -> build/lib.linux-i686-cpython-313/prody/chromatin copying prody/chromatin/norm.py -> build/lib.linux-i686-cpython-313/prody/chromatin copying prody/chromatin/straw.py -> build/lib.linux-i686-cpython-313/prody/chromatin creating build/lib.linux-i686-cpython-313/prody/compounds copying prody/compounds/__init__.py -> build/lib.linux-i686-cpython-313/prody/compounds copying prody/compounds/bird.py -> build/lib.linux-i686-cpython-313/prody/compounds copying prody/compounds/ccd.py -> build/lib.linux-i686-cpython-313/prody/compounds copying prody/compounds/functions.py -> build/lib.linux-i686-cpython-313/prody/compounds copying prody/compounds/pdbligands.py -> build/lib.linux-i686-cpython-313/prody/compounds creating build/lib.linux-i686-cpython-313/prody/domain_decomposition copying prody/domain_decomposition/__init__.py -> build/lib.linux-i686-cpython-313/prody/domain_decomposition copying prody/domain_decomposition/spectrus.py -> build/lib.linux-i686-cpython-313/prody/domain_decomposition creating build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/TreeConstruction.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/__init__.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/catchall.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/checkers.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/doctools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/drawtools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/eigtools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/laptools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/legacy.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/logger.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/misctools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/pathtools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/seqtools.py -> build/lib.linux-i686-cpython-313/prody/utilities copying prody/utilities/settings.py -> build/lib.linux-i686-cpython-313/prody/utilities creating build/lib.linux-i686-cpython-313/prody/apps copying prody/apps/__init__.py -> build/lib.linux-i686-cpython-313/prody/apps copying prody/apps/apptools.py -> build/lib.linux-i686-cpython-313/prody/apps creating build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/__init__.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_clustenm.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_energy.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-i686-cpython-313/prody/apps/prody_apps creating build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/__init__.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-i686-cpython-313/prody/apps/evol_apps creating build/lib.linux-i686-cpython-313/prody/tests copying prody/tests/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests creating build/lib.linux-i686-cpython-313/prody/tests/apps copying prody/tests/apps/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-i686-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-i686-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-i686-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-i686-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-i686-cpython-313/prody/tests/apps creating build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_atomic.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_atommap.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_fragment.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_hierview.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_select.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_subset.py -> build/lib.linux-i686-cpython-313/prody/tests/atomic creating build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/datafiles creating build/lib.linux-i686-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_editing.py -> build/lib.linux-i686-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_enms.py -> build/lib.linux-i686-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_pca.py -> build/lib.linux-i686-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_signature.py -> build/lib.linux-i686-cpython-313/prody/tests/dynamics creating build/lib.linux-i686-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-i686-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-i686-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_functions.py -> build/lib.linux-i686-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-i686-cpython-313/prody/tests/ensemble creating build/lib.linux-i686-cpython-313/prody/tests/kdtree copying prody/tests/kdtree/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/kdtree copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-i686-cpython-313/prody/tests/kdtree creating build/lib.linux-i686-cpython-313/prody/tests/measure copying prody/tests/measure/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/measure copying prody/tests/measure/test_contacts.py -> build/lib.linux-i686-cpython-313/prody/tests/measure copying prody/tests/measure/test_measure.py -> build/lib.linux-i686-cpython-313/prody/tests/measure copying prody/tests/measure/test_transform.py -> build/lib.linux-i686-cpython-313/prody/tests/measure creating build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_ciffile.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_dssp.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_header.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-i686-cpython-313/prody/tests/proteins creating build/lib.linux-i686-cpython-313/prody/tests/sequence copying prody/tests/sequence/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_analysis.py -> build/lib.linux-i686-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_msa.py -> build/lib.linux-i686-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_msafile.py -> build/lib.linux-i686-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_sequence.py -> build/lib.linux-i686-cpython-313/prody/tests/sequence creating build/lib.linux-i686-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-i686-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/test_frame.py -> build/lib.linux-i686-cpython-313/prody/tests/trajectory creating build/lib.linux-i686-cpython-313/prody/tests/utilities copying prody/tests/utilities/__init__.py -> build/lib.linux-i686-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_checkers.py -> build/lib.linux-i686-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_misctools.py -> build/lib.linux-i686-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-i686-cpython-313/prody/tests/utilities creating build/lib.linux-i686-cpython-313/prody/utilities/datafiles copying prody/utilities/datafiles/mod_res_map.dat -> build/lib.linux-i686-cpython-313/prody/utilities/datafiles copying prody/utilities/datafiles/saxs_water.dat -> build/lib.linux-i686-cpython-313/prody/utilities/datafiles copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_ca.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2nwl-opm.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3hsy.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3o21.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3p3w.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_h36.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_hex.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/commute1ubi.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_evalues.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_vectors.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/hit1ubi.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_evalues.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_vectors.dat -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_hessian.coo -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_cov.coo -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6yfy.cif -> build/lib.linux-i686-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6zu5.cif -> build/lib.linux-i686-cpython-313/prody/tests/datafiles running build_ext building 'prody.dynamics.rtbtools' extension creating build/temp.linux-i686-cpython-313 creating build/temp.linux-i686-cpython-313/prody creating build/temp.linux-i686-cpython-313/prody/dynamics gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/dynamics/rtbtools.c -o build/temp.linux-i686-cpython-313/prody/dynamics/rtbtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/dynamics/rtbtools.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/dynamics/rtbtools.cpython-313-i386-linux-gnu.so building 'prody.dynamics.smtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/dynamics/smtools.c -o build/temp.linux-i686-cpython-313/prody/dynamics/smtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/dynamics/smtools.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/dynamics/smtools.cpython-313-i386-linux-gnu.so building 'prody.sequence.msatools' extension creating build/temp.linux-i686-cpython-313/prody/sequence gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/msatools.c -o build/temp.linux-i686-cpython-313/prody/sequence/msatools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/sequence/msatools.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/sequence/msatools.cpython-313-i386-linux-gnu.so building 'prody.sequence.msaio' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/msaio.c -o build/temp.linux-i686-cpython-313/prody/sequence/msaio.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/sequence/msaio.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/sequence/msaio.cpython-313-i386-linux-gnu.so building 'prody.sequence.seqtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/seqtools.c -o build/temp.linux-i686-cpython-313/prody/sequence/seqtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/sequence/seqtools.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/sequence/seqtools.cpython-313-i386-linux-gnu.so building 'prody.kdtree._CKDTree' extension creating build/temp.linux-i686-cpython-313/prody/kdtree gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/kdtree/KDTree.c -o build/temp.linux-i686-cpython-313/prody/kdtree/KDTree.o gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-i686-cpython-313/prody/kdtree/KDTreemodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/kdtree/KDTree.o build/temp.linux-i686-cpython-313/prody/kdtree/KDTreemodule.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/kdtree/_CKDTree.cpython-313-i386-linux-gnu.so building 'prody.proteins.ccealign' extension creating build/temp.linux-i686-cpython-313/prody/proteins creating build/temp.linux-i686-cpython-313/prody/proteins/ccealign gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Iprody/utilities/tnt -I/usr/include/python3.13 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-i686-cpython-313/prody/proteins/ccealign/ccealignmodule.o g++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-i686-cpython-313/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib -o build/lib.linux-i686-cpython-313/prody/proteins/ccealign.cpython-313-i386-linux-gnu.so + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.dFgm58 + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + '[' /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build + mkdir /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT --prefix /usr running install /usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13 creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody copying build/lib.linux-i686-cpython-313/prody/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/acceptor.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/angle.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/atom.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/atomgroup.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/atomic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/atommap.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/bond.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/chain.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/crossterm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/dihedral.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/donor.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/fields.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/flags.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/hierview.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/improper.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/nbexclusion.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/pointer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/residue.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/segment.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/selection.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic copying build/lib.linux-i686-cpython-313/prody/atomic/subset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/cath.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/dali.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/goa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/pfam.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/quartataweb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database copying build/lib.linux-i686-cpython-313/prody/database/uniprot.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/adaptive.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/bbenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/bildfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/clustenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/compare.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/editing.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/entropy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/essa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/exanm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/exgnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/gamma.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/heatmapper.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/imanm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/mechstiff.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/mode.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/modeset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/nma.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/nmdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/perturb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/plotting.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/rtb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/sampling.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/signature.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/vmdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/rtbtools.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics copying build/lib.linux-i686-cpython-313/prody/dynamics/smtools.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-313/prody/ensemble/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-313/prody/ensemble/conformation.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-313/prody/ensemble/ensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-313/prody/ensemble/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble copying build/lib.linux-i686-cpython-313/prody/ensemble/pdbensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/kdtree copying build/lib.linux-i686-cpython-313/prody/kdtree/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/kdtree copying build/lib.linux-i686-cpython-313/prody/kdtree/kdtree.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/kdtree copying build/lib.linux-i686-cpython-313/prody/kdtree/_CKDTree.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/kdtree creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure copying build/lib.linux-i686-cpython-313/prody/measure/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure copying build/lib.linux-i686-cpython-313/prody/measure/contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure copying build/lib.linux-i686-cpython-313/prody/measure/measure.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure copying build/lib.linux-i686-cpython-313/prody/measure/transform.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/blastpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/ciffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/cifheader.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/compare.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/dssp.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/emdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/fixer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/header.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/localpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/pdbclusters.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/pdbfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/starfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/stride.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/waterbridges.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/wwpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins copying build/lib.linux-i686-cpython-313/prody/proteins/ccealign.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/msa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/msafile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/plotting.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/sequence.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/msatools.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/msaio.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence copying build/lib.linux-i686-cpython-313/prody/sequence/seqtools.cpython-313-i386-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/dcdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/frame.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/psffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/trajbase.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/trajectory.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory copying build/lib.linux-i686-cpython-313/prody/trajectory/trajfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-313/prody/chromatin/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-313/prody/chromatin/cluster.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-313/prody/chromatin/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-313/prody/chromatin/hic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-313/prody/chromatin/norm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin copying build/lib.linux-i686-cpython-313/prody/chromatin/straw.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds copying build/lib.linux-i686-cpython-313/prody/compounds/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds copying build/lib.linux-i686-cpython-313/prody/compounds/bird.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds copying build/lib.linux-i686-cpython-313/prody/compounds/ccd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds copying build/lib.linux-i686-cpython-313/prody/compounds/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds copying build/lib.linux-i686-cpython-313/prody/compounds/pdbligands.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/domain_decomposition copying build/lib.linux-i686-cpython-313/prody/domain_decomposition/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/domain_decomposition copying build/lib.linux-i686-cpython-313/prody/domain_decomposition/spectrus.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/domain_decomposition creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/TreeConstruction.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/catchall.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/checkers.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/doctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/drawtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/eigtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/laptools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/legacy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/logger.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/misctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/pathtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/seqtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities copying build/lib.linux-i686-cpython-313/prody/utilities/settings.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/datafiles copying build/lib.linux-i686-cpython-313/prody/utilities/datafiles/mod_res_map.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/datafiles copying build/lib.linux-i686-cpython-313/prody/utilities/datafiles/saxs_water.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/datafiles creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps copying build/lib.linux-i686-cpython-313/prody/apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps copying build/lib.linux-i686-cpython-313/prody/apps/apptools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/nmaoptions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_align.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_biomol.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_blast.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_catdcd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_clustenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_eda.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_energy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_fetch.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-i686-cpython-313/prody/apps/prody_apps/prody_select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_coevol.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_conserv.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_fetch.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_filter.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_merge.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_occupancy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_rankorder.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_refine.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-i686-cpython-313/prody/apps/evol_apps/evol_search.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests copying build/lib.linux-i686-cpython-313/prody/tests/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/apps/test_prody_anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/apps/test_prody_catdcd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/apps/test_prody_examples.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/apps/test_prody_gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps copying build/lib.linux-i686-cpython-313/prody/tests/apps/test_prody_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/test_atomic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/test_atommap.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/test_fragment.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/test_hierview.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/test_select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-i686-cpython-313/prody/tests/atomic/test_subset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1ejg.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1r19_dssp.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1ubi.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb1ubi_ca.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb2k39_ca.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb2k39_truncated.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb2nwl-opm.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb3hsy.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb3mht.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb3o21.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb3p3w.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb4v8r_h36.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb4v8r_hex.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pdbRTER.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/anm1ubi_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/anm1ubi_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/commute1ubi.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/exanm2nwl_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/exanm2nwl_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/gnm1ubi_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/gnm1ubi_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/hit1ubi.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/msa_Cys_knot_di.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pca2k39_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pca2k39_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/anm1ubi_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/exanm2nwl_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/pca2k39_cov.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/rtb2gb1_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/rtb2gb1_project.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/dcd2k39_truncated.dcd -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/xmlSTI.xml -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/msa_Cys_knot.fasta -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/msa_Cys_knot.slx -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/msa_Cys_knot.sth -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/mmcif_6yfy.cif -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-i686-cpython-313/prody/tests/datafiles/mmcif_6zu5.cif -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-313/prody/tests/dynamics/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-313/prody/tests/dynamics/test_editing.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-313/prody/tests/dynamics/test_enms.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-313/prody/tests/dynamics/test_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-i686-cpython-313/prody/tests/dynamics/test_signature.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-313/prody/tests/ensemble/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-313/prody/tests/ensemble/test_conformation.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-313/prody/tests/ensemble/test_ensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-313/prody/tests/ensemble/test_functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-i686-cpython-313/prody/tests/ensemble/test_pdbensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/kdtree copying build/lib.linux-i686-cpython-313/prody/tests/kdtree/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/kdtree copying build/lib.linux-i686-cpython-313/prody/tests/kdtree/test_kdtree.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/kdtree creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure copying build/lib.linux-i686-cpython-313/prody/tests/measure/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure copying build/lib.linux-i686-cpython-313/prody/tests/measure/test_contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure copying build/lib.linux-i686-cpython-313/prody/tests/measure/test_measure.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure copying build/lib.linux-i686-cpython-313/prody/tests/measure/test_transform.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_ciffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_dssp.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_header.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_localpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_pdbfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-i686-cpython-313/prody/tests/proteins/test_wwpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-313/prody/tests/sequence/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-313/prody/tests/sequence/test_analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-313/prody/tests/sequence/test_msa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-313/prody/tests/sequence/test_msafile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-i686-cpython-313/prody/tests/sequence/test_sequence.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-i686-cpython-313/prody/tests/trajectory/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-i686-cpython-313/prody/tests/trajectory/test_dcdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-i686-cpython-313/prody/tests/trajectory/test_frame.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-i686-cpython-313/prody/tests/utilities/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-i686-cpython-313/prody/tests/utilities/test_checkers.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-i686-cpython-313/prody/tests/utilities/test_misctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-i686-cpython-313/prody/tests/utilities/test_pathtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/acceptor.py to acceptor.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/angle.py to angle.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/atom.py to atom.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/atomgroup.py to atomgroup.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/atomic.py to atomic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/atommap.py to atommap.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/bond.py to bond.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/chain.py to chain.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/crossterm.py to crossterm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/dihedral.py to dihedral.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/donor.py to donor.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/fields.py to fields.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/flags.py to flags.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/hierview.py to hierview.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/improper.py to improper.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/pointer.py to pointer.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/residue.py to residue.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/segment.py to segment.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/select.py to select.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/selection.py to selection.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/subset.py to subset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/cath.py to cath.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/dali.py to dali.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/goa.py to goa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/pfam.py to pfam.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/quartataweb.py to quartataweb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/database/uniprot.py to uniprot.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/adaptive.py to adaptive.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/analysis.py to analysis.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/anm.py to anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/bbenm.py to bbenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/bildfile.py to bildfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/clustenm.py to clustenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/compare.py to compare.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/editing.py to editing.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/entropy.py to entropy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/essa.py to essa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/exanm.py to exanm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/exgnm.py to exgnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/gamma.py to gamma.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/gnm.py to gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/imanm.py to imanm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/mode.py to mode.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/modeset.py to modeset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/nma.py to nma.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/pca.py to pca.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/perturb.py to perturb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/plotting.py to plotting.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/rtb.py to rtb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/sampling.py to sampling.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/signature.py to signature.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble/conformation.py to conformation.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble/ensemble.py to ensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/kdtree/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/kdtree/kdtree.py to kdtree.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure/contacts.py to contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure/measure.py to measure.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/measure/transform.py to transform.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/blastpdb.py to blastpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/ciffile.py to ciffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/cifheader.py to cifheader.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/compare.py to compare.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/dssp.py to dssp.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/emdfile.py to emdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/fixer.py to fixer.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/header.py to header.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/localpdb.py to localpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/pdbfile.py to pdbfile.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/starfile.py to starfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/stride.py to stride.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/waterbridges.py to waterbridges.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/proteins/wwpdb.py to wwpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence/analysis.py to analysis.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence/msa.py to msa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence/msafile.py to msafile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence/plotting.py to plotting.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/sequence/sequence.py to sequence.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/frame.py to frame.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/psffile.py to psffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/trajbase.py to trajbase.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/trajectory.py to trajectory.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/trajectory/trajfile.py to trajfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin/cluster.py to cluster.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin/hic.py to hic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin/norm.py to norm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/chromatin/straw.py to straw.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds/bird.py to bird.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds/ccd.py to ccd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/compounds/pdbligands.py to pdbligands.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/domain_decomposition/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/catchall.py to catchall.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/checkers.py to checkers.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/doctools.py to doctools.cpython-313.pyc /usr/lib/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/drawtools.py to drawtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/eigtools.py to eigtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/laptools.py to laptools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/legacy.py to legacy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/logger.py to logger.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/misctools.py to misctools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/pathtools.py to pathtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/seqtools.py to seqtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/utilities/settings.py to settings.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/apptools.py to apptools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_clustenm.py to prody_clustenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/test_select.py to test_select.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/datafiles/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/kdtree/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure/test_measure.py to test_measure.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/measure/test_transform.py to test_transform.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_header.py to test_header.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-313.pyc writing byte-compilation script '/tmp/tmpgp38ogcz.py' /usr/bin/python3 /tmp/tmpgp38ogcz.py /usr/lib/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' removing /tmp/tmpgp38ogcz.py running install_egg_info running egg_info creating ProDy.egg-info writing ProDy.egg-info/PKG-INFO writing dependency_links to ProDy.egg-info/dependency_links.txt writing entry points to ProDy.egg-info/entry_points.txt writing requirements to ProDy.egg-info/requires.txt writing top-level names to ProDy.egg-info/top_level.txt writing manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'prody/*/*/*.c' warning: no files found matching 'prody/*/*.cpp' warning: no files found matching 'prody/utilities/datafiles/*.txt' adding license file 'LICENSE.rst' writing manifest file 'ProDy.egg-info/SOURCES.txt' Copying ProDy.egg-info to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/ProDy-2.4.1-py3.13.egg-info running install_scripts Installing evol script to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin Installing prody script to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + rm -rfv /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/__pycache__ + mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + rm -f /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody + cd scripts + cp -pr ./prody ./python3.13-prody + cp -pr ./evol ./python3.13-evol + sed -i '1s=^#!/usr/bin/\(python\|env python\)[0-9.]*=#!/usr/bin/python3=' ./prody ./evol ./python3.13-prody ./python3.13-evol + for i in prody-3.13 + touch -r ./python3.13-prody prody-3.13 + install -p prody-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + ln -sf /usr/bin/python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody-3.13 + for i in evol-3.13 + touch -r ./python3.13-evol evol-3.13 + install -p evol-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + ln -sf /usr/bin/python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol-3.13 + cd .. + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.4.1-7.fc42 --unique-debug-suffix -2.4.1-7.fc42.i386 --unique-debug-src-base ProDy-2.4.1-7.fc42.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1 find-debuginfo: starting Extracting debug info from 7 files DWARF-compressing 7 files sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/ProDy-2.4.1-7.fc42.i386 464 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13 using python3.13 /usr/lib/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/debug/usr/lib/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/acceptor.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/angle.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/atommap.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/atomic/__pycache__/atom.cpython-313.pyc: rewriting with normalized contents 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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/utilities/__pycache__/test_pathtools.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages/prody/tests/trajectory/__pycache__/test_dcdfile.cpython-313.pyc: rewriting with normalized contents Scanned 88 directories and 714 files, processed 233 inodes, 233 modified (52 replaced + 181 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS/rpm-debuginfo.specpart Processing files: python3-ProDy-2.4.1-7.fc42.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.poKURn + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd ProDy-2.4.1 + DOCDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/README.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.FcRp31 + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd ProDy-2.4.1 + LICENSEDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/LICENSE.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/evol-3.13 -> /usr/bin/python3.13-evol warning: absolute symlink: /usr/bin/prody-3.13 -> /usr/bin/python3.13-prody Provides: ProDy = 0:2.4.1-7.fc42 python-ProDy = 2.4.1-7.fc42 python3-ProDy = 2.4.1-7.fc42 python3-ProDy(x86-32) = 2.4.1-7.fc42 python3.13-ProDy = 2.4.1-7.fc42 python3.13dist(prody) = 2.4.1 python3dist(prody) = 2.4.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.13 python3.13dist(biopython) python3.13dist(numpy) >= 1.10 python3.13dist(pyparsing) python3.13dist(scipy) python3.13dist(setuptools) Obsoletes: python-ProDy < 2.4.1-7.fc42 Processing files: ProDy-debugsource-2.4.1-7.fc42.i686 Provides: ProDy-debugsource = 2.4.1-7.fc42 ProDy-debugsource(x86-32) = 2.4.1-7.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-ProDy-debuginfo-2.4.1-7.fc42.i686 Provides: debuginfo(build-id) = 0dda2ccb3c43200cae52b2bfe949dee36494f739 debuginfo(build-id) = 1d9d8d031b0b088bb4d1af339798ce5384a2e1ba debuginfo(build-id) = 8d77b4b0785ce6bafe3853e0205615b8ba2077ca debuginfo(build-id) = 9b3f5147093c1ca0b2edb0f57da0867d72d4e95f debuginfo(build-id) = baafcab32d6090480146a49a9d22b3950bae73f0 debuginfo(build-id) = e52bd0e8ec316be1538ecbef2bf4be647a68f1c7 debuginfo(build-id) = e59ec605fa1357ea893bac087b42a435d82ba1e6 python-ProDy-debuginfo = 2.4.1-7.fc42 python3-ProDy-debuginfo = 2.4.1-7.fc42 python3-ProDy-debuginfo(x86-32) = 2.4.1-7.fc42 python3.13-ProDy-debuginfo = 2.4.1-7.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: ProDy-debugsource(x86-32) = 2.4.1-7.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT Wrote: /builddir/build/RPMS/python3-ProDy-debuginfo-2.4.1-7.fc42.i686.rpm Wrote: /builddir/build/RPMS/ProDy-debugsource-2.4.1-7.fc42.i686.rpm Wrote: /builddir/build/RPMS/python3-ProDy-2.4.1-7.fc42.i686.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Sfj8Bf + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + test -d /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build + rm -rf /builddir/build/BUILD/ProDy-2.4.1-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: absolute symlink: /usr/bin/evol-3.13 -> /usr/bin/python3.13-evol absolute symlink: /usr/bin/prody-3.13 -> /usr/bin/python3.13-prody Finish: rpmbuild ProDy-2.4.1-7.fc42.src.rpm Finish: build phase for ProDy-2.4.1-7.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1725633524.351470/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-7.fc42.src.rpm) Config(child) 2 minutes 5 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python3-ProDy", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "i686" }, { "name": "ProDy", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "src" }, { "name": "python3-ProDy-debuginfo", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "i686" }, { "name": "ProDy-debugsource", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "i686" } ] } RPMResults finished