Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c18a' (ED25519) to the list of known hosts. cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-51g8zrth/snakemake rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading snakemake-8.10.8.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o snakemake-8.10.8.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23:pr:53/snakemake/snakemake-8.10.8.tar.gz/md5/d33d916dbb8b012fcd3d59bc6ec39f85/snakemake-8.10.8.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 8450k 100 8450k 0 0 12.2M 0 --:--:-- --:--:-- --:--:-- 12.2M INFO: Reading stdout from command: md5sum snakemake-8.10.8.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-51g8zrth/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-51g8zrth/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1713614647.004945 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-51g8zrth/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-51g8zrth/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1713614647.004945 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-51g8zrth/snakemake/snakemake.spec) Config(fedora-40-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.5 INFO: Mock Version: 5.5 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-bootstrap-1713614647.004945/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:40 INFO: Pulling image: registry.fedoraproject.org/fedora:40 INFO: Copy content of container registry.fedoraproject.org/fedora:40 to /var/lib/mock/fedora-40-x86_64-bootstrap-1713614647.004945/root INFO: Checking that registry.fedoraproject.org/fedora:40 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:40 with podman image mount INFO: image registry.fedoraproject.org/fedora:40 as /var/lib/containers/storage/overlay/dda41d79bd44da94ffa760cc93dec73247e1f2788540bad3f488ec3b67f4c605/merged INFO: umounting image registry.fedoraproject.org/fedora:40 (/var/lib/containers/storage/overlay/dda41d79bd44da94ffa760cc93dec73247e1f2788540bad3f488ec3b67f4c605/merged) with podman image umount INFO: Using 'dnf' instead of 'dnf5' for bootstrap chroot INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf5 tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 7.3 MB/s | 3.2 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 39 MB/s | 17 MB 00:00 fedora 7.6 MB/s | 20 MB 00:02 updates 709 kB/s | 1.8 MB 00:02 Dependencies resolved. ========================================================================================================== Package Arch Version Repository Size ========================================================================================================== Installing: dnf5 x86_64 5.1.17-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 691 k dnf5-plugins x86_64 5.1.17-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 351 k Installing dependencies: fmt x86_64 10.2.1-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 125 k libdnf5 x86_64 5.1.17-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 997 k libdnf5-cli x86_64 5.1.17-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 231 k sdbus-cpp x86_64 1.5.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 113 k systemd-libs x86_64 255.4-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 708 k Transaction Summary ========================================================================================================== Install 7 Packages Total download size: 3.1 M Installed size: 8.8 M Downloading Packages: (1/7): dnf5-5.1.17-1.fc41.x86_64.rpm 6.2 MB/s | 691 kB 00:00 (2/7): fmt-10.2.1-4.fc41.x86_64.rpm 1.1 MB/s | 125 kB 00:00 (3/7): dnf5-plugins-5.1.17-1.fc41.x86_64.rpm 3.0 MB/s | 351 kB 00:00 (4/7): libdnf5-cli-5.1.17-1.fc41.x86_64.rpm 8.9 MB/s | 231 kB 00:00 (5/7): sdbus-cpp-1.5.0-2.fc41.x86_64.rpm 4.8 MB/s | 113 kB 00:00 (6/7): libdnf5-5.1.17-1.fc41.x86_64.rpm 21 MB/s | 997 kB 00:00 (7/7): systemd-libs-255.4-1.fc41.x86_64.rpm 21 MB/s | 708 kB 00:00 -------------------------------------------------------------------------------- Total 18 MB/s | 3.1 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : fmt-10.2.1-4.fc41.x86_64 1/7 Installing : libdnf5-5.1.17-1.fc41.x86_64 2/7 Installing : libdnf5-cli-5.1.17-1.fc41.x86_64 3/7 Installing : systemd-libs-255.4-1.fc41.x86_64 4/7 Installing : sdbus-cpp-1.5.0-2.fc41.x86_64 5/7 Installing : dnf5-5.1.17-1.fc41.x86_64 6/7 Installing : dnf5-plugins-5.1.17-1.fc41.x86_64 7/7 Running scriptlet: dnf5-plugins-5.1.17-1.fc41.x86_64 7/7 Installed: dnf5-5.1.17-1.fc41.x86_64 dnf5-plugins-5.1.17-1.fc41.x86_64 fmt-10.2.1-4.fc41.x86_64 libdnf5-5.1.17-1.fc41.x86_64 libdnf5-cli-5.1.17-1.fc41.x86_64 sdbus-cpp-1.5.0-2.fc41.x86_64 systemd-libs-255.4-1.fc41.x86_64 Complete! INFO: Switching package manager from dnf to the dnf5 (direct choice) Finish(bootstrap): installing dnf5 tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-1713614647.004945/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 python3-dnf-4.19.0-1.fc40.noarch yum-4.19.0-1.fc40.noarch dnf5-5.1.17-1.fc41.x86_64 dnf5-plugins-5.1.17-1.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 1.5 MiB/s | 1.9 MiB | 00m01s fedora 100% | 1.4 MiB/s | 20.8 MiB | 00m15s Copr repository 100% | 24.2 MiB/s | 3.2 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 4.2 MiB/s | 17.2 MiB | 00m04s Repositories loaded. 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6.4-12.20240127.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.2 KiB ncurses-libs x86_64 6.4-12.20240127.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 963.2 KiB ocaml-srpm-macros noarch 9-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB openblas-srpm-macros noarch 2-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0 B openldap x86_64 2.6.7-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 635.1 KiB openssl-libs x86_64 1:3.2.1-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.8 MiB p11-kit x86_64 0.25.3-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB p11-kit-trust x86_64 0.25.3-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 391.4 KiB package-notes-srpm-macros noarch 0.5-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam x86_64 1.6.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB pam-libs x86_64 1.6.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 135.0 KiB pcre2 x86_64 10.43-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 653.5 KiB pcre2-syntax noarch 10.43-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 249.0 KiB perl-srpm-macros noarch 1-53.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf x86_64 2.1.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 82.4 KiB pkgconf-m4 noarch 2.1.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13.9 KiB pkgconf-pkg-config x86_64 2.1.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 989.0 B popt x86_64 1.19-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.9 KiB publicsuffix-list-dafsa noarch 20240107-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.12.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 KiB python-srpm-macros noarch 3.12-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 50.5 KiB qt5-srpm-macros noarch 5.15.13-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 492.0 B qt6-srpm-macros noarch 6.7.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline x86_64 8.2-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 489.2 KiB rpm x86_64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB rpm-build-libs x86_64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 198.4 KiB rpm-libs x86_64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 709.9 KiB rpm-sequoia x86_64 1.6.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB rust-srpm-macros noarch 26.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.14.5-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.4 KiB sqlite-libs x86_64 3.45.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB systemd-libs x86_64 255.4-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 MiB util-linux-core x86_64 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB xxhash-libs x86_64 0.8.2-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.5 KiB xz-libs x86_64 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.8 KiB zig-srpm-macros noarch 1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip x86_64 3.0-40.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 703.2 KiB zlib-ng-compat x86_64 2.1.6-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134.0 KiB zstd x86_64 1.5.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 52 MiB. Need to download 52 MiB. After this operation 179 MiB will be used (install 179 MiB, remove 0 B). [ 1/153] bzip2-0:1.0.8-18.fc40.x86_64 100% | 9.9 KiB/s | 52.4 KiB | 00m05s [ 2/153] coreutils-0:9.5-1.fc41.x86_64 100% | 206.2 KiB/s | 1.1 MiB | 00m05s [ 3/153] bash-0:5.2.26-3.fc40.x86_64 100% | 341.1 KiB/s | 1.8 MiB | 00m05s [ 4/153] cpio-0:2.15-1.fc40.x86_64 100% | 4.2 MiB/s | 285.1 KiB | 00m00s [ 5/153] fedora-release-common-0:41-0. 100% | 936.0 KiB/s | 21.5 KiB | 00m00s [ 6/153] diffutils-0:3.10-5.fc40.x86_6 100% | 10.5 MiB/s | 396.8 KiB | 00m00s [ 7/153] findutils-1:4.9.0-8.fc40.x86_ 100% | 8.7 MiB/s | 482.5 KiB | 00m00s [ 8/153] gawk-0:5.3.0-3.fc40.x86_64 100% | 21.2 MiB/s | 1.1 MiB | 00m00s [ 9/153] glibc-minimal-langpack-0:2.39 100% | 2.5 MiB/s | 108.5 KiB | 00m00s [ 10/153] gzip-0:1.13-1.fc40.x86_64 100% | 7.6 MiB/s | 164.0 KiB | 00m00s [ 11/153] grep-0:3.11-7.fc40.x86_64 100% | 9.4 MiB/s | 289.7 KiB | 00m00s [ 12/153] info-0:7.1-2.fc40.x86_64 100% | 6.6 MiB/s | 182.3 KiB | 00m00s [ 13/153] patch-0:2.7.6-24.fc40.x86_64 100% | 5.5 MiB/s | 130.7 KiB | 00m00s [ 14/153] redhat-rpm-config-0:288-1.fc4 100% | 2.8 MiB/s | 75.3 KiB | 00m00s [ 15/153] sed-0:4.9-1.fc40.x86_64 100% | 11.6 MiB/s | 309.2 KiB | 00m00s [ 16/153] shadow-utils-2:4.15.1-2.fc41. 100% | 28.1 MiB/s | 1.3 MiB | 00m00s [ 17/153] unzip-0:6.0-63.fc40.x86_64 100% | 4.2 MiB/s | 184.5 KiB | 00m00s [ 18/153] util-linux-0:2.40-13.fc41.x86 100% | 20.6 MiB/s | 1.2 MiB | 00m00s [ 19/153] which-0:2.21-41.fc40.x86_64 100% | 1.5 MiB/s | 41.4 KiB | 00m00s [ 20/153] xz-1:5.4.6-3.fc41.x86_64 100% | 13.0 MiB/s | 531.9 KiB | 00m00s [ 21/153] coreutils-common-0:9.5-1.fc41 100% | 38.8 MiB/s | 2.1 MiB | 00m00s [ 22/153] fedora-repos-0:41-0.1.noarch 100% | 389.3 KiB/s | 9.3 KiB | 00m00s [ 23/153] glibc-0:2.39.9000-12.fc41.x86 100% | 22.1 MiB/s | 2.2 MiB | 00m00s [ 24/153] glibc-common-0:2.39.9000-12.f 100% | 10.0 MiB/s | 391.0 KiB | 00m00s [ 25/153] libblkid-0:2.40-13.fc41.x86_6 100% | 3.7 MiB/s | 124.3 KiB | 00m00s [ 26/153] libfdisk-0:2.40-13.fc41.x86_6 100% | 3.9 MiB/s | 159.3 KiB | 00m00s [ 27/153] libmount-0:2.40-13.fc41.x86_6 100% | 4.6 MiB/s | 154.7 KiB | 00m00s [ 28/153] libsmartcols-0:2.40-13.fc41.x 100% | 1.9 MiB/s | 83.3 KiB | 00m00s [ 29/153] libuuid-0:2.40-13.fc41.x86_64 100% | 646.2 KiB/s | 28.4 KiB | 00m00s [ 30/153] util-linux-core-0:2.40-13.fc4 100% | 4.6 MiB/s | 519.8 KiB | 00m00s [ 31/153] xz-libs-1:5.4.6-3.fc41.x86_64 100% | 2.2 MiB/s | 110.2 KiB | 00m00s [ 32/153] fedora-gpg-keys-0:41-0.1.noar 100% | 3.0 MiB/s | 121.0 KiB | 00m00s [ 33/153] fedora-repos-rawhide-0:41-0.1 100% | 198.3 KiB/s | 8.9 KiB | 00m00s [ 34/153] glibc-gconv-extra-0:2.39.9000 100% | 21.9 MiB/s | 1.6 MiB | 00m00s [ 35/153] libselinux-0:3.6-4.fc40.x86_6 100% | 1.9 MiB/s | 87.5 KiB | 00m00s [ 36/153] libxcrypt-0:4.4.36-5.fc40.x86 100% | 435.7 KiB/s | 118.1 KiB | 00m00s [ 37/153] ncurses-libs-0:6.4-12.2024012 100% | 12.5 MiB/s | 332.5 KiB | 00m00s [ 38/153] systemd-libs-0:255.4-1.fc41.x 100% | 16.5 MiB/s | 707.8 KiB | 00m00s [ 39/153] audit-libs-0:4.0.1-1.fc41.x86 100% | 2.9 MiB/s | 125.6 KiB | 00m00s [ 40/153] authselect-libs-0:1.5.0-5.fc4 100% | 6.3 MiB/s | 204.9 KiB | 00m00s [ 41/153] libcap-ng-0:0.8.5-1.fc41.x86_ 100% | 1.4 MiB/s | 32.3 KiB | 00m00s [ 42/153] libutempter-0:1.2.1-13.fc40.x 100% | 977.9 KiB/s | 26.4 KiB | 00m00s [ 43/153] pam-0:1.6.1-1.fc41.x86_64 100% | 18.7 MiB/s | 516.8 KiB | 00m00s [ 44/153] authselect-0:1.5.0-5.fc41.x86 100% | 6.0 MiB/s | 141.1 KiB | 00m00s [ 45/153] pam-libs-0:1.6.1-1.fc41.x86_6 100% | 1.3 MiB/s | 56.9 KiB | 00m00s [ 46/153] readline-0:8.2-8.fc40.x86_64 100% | 5.1 MiB/s | 213.3 KiB | 00m00s [ 47/153] zlib-ng-compat-0:2.1.6-2.fc40 100% | 3.4 MiB/s | 77.1 KiB | 00m00s [ 48/153] bzip2-libs-0:1.0.8-18.fc40.x8 100% | 1.1 MiB/s | 40.9 KiB | 00m00s [ 49/153] libacl-0:2.3.2-1.fc40.x86_64 100% | 939.6 KiB/s | 24.4 KiB | 00m00s [ 50/153] libcap-0:2.69-8.fc41.x86_64 100% | 3.5 MiB/s | 85.5 KiB | 00m00s [ 51/153] libzstd-0:1.5.6-1.fc41.x86_64 100% | 9.4 MiB/s | 308.9 KiB | 00m00s [ 52/153] libgcc-0:14.0.1-0.15.fc41.x86 100% | 2.9 MiB/s | 125.6 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| 38.3 KiB | 00m00s [ 66/153] file-0:5.45-5.fc41.x86_64 100% | 2.3 MiB/s | 49.1 KiB | 00m00s [ 67/153] file-libs-0:5.45-5.fc41.x86_6 100% | 8.1 MiB/s | 763.0 KiB | 00m00s [ 68/153] pkgconf-pkg-config-0:2.1.0-1. 100% | 359.4 KiB/s | 9.7 KiB | 00m00s [ 69/153] popt-0:1.19-6.fc40.x86_64 100% | 2.4 MiB/s | 59.6 KiB | 00m00s [ 70/153] rpm-0:4.19.1.1-1.fc40.x86_64 100% | 11.6 MiB/s | 511.8 KiB | 00m00s [ 71/153] rpm-build-libs-0:4.19.1.1-1.f 100% | 3.0 MiB/s | 95.0 KiB | 00m00s [ 72/153] rpm-libs-0:4.19.1.1-1.fc40.x8 100% | 7.9 MiB/s | 308.9 KiB | 00m00s [ 73/153] curl-0:8.7.1-1.fc41.x86_64 100% | 7.1 MiB/s | 305.9 KiB | 00m00s [ 74/153] libarchive-0:3.7.2-3.fc41.x86 100% | 12.4 MiB/s | 406.6 KiB | 00m00s [ 75/153] ansible-srpm-macros-0:1-15.fc 100% | 834.7 KiB/s | 20.9 KiB | 00m00s [ 76/153] dwz-0:0.15-6.fc40.x86_64 100% | 5.4 MiB/s | 137.8 KiB | 00m00s [ 77/153] efi-srpm-macros-0:5-11.fc40.n 100% | 929.1 KiB/s | 22.3 KiB | 00m00s [ 78/153] fonts-srpm-macros-1:2.0.5-14. 100% | 947.2 KiB/s | 26.5 KiB | 00m00s [ 79/153] forge-srpm-macros-0:0.3.1-1.f 100% | 808.5 KiB/s | 19.4 KiB | 00m00s [ 80/153] fpc-srpm-macros-0:1.3-12.fc40 100% | 340.6 KiB/s | 7.8 KiB | 00m00s [ 81/153] ghc-srpm-macros-0:1.9.1-1.fc4 100% | 472.0 KiB/s | 9.0 KiB | 00m00s [ 82/153] gnat-srpm-macros-0:6-5.fc40.n 100% | 420.2 KiB/s | 8.8 KiB | 00m00s [ 83/153] go-srpm-macros-0:3.6.0-1.fc41 100% | 1.1 MiB/s | 27.9 KiB | 00m00s [ 84/153] kernel-srpm-macros-0:1.0-23.f 100% | 348.7 KiB/s | 9.8 KiB | 00m00s [ 85/153] lua-srpm-macros-0:1-13.fc40.n 100% | 323.4 KiB/s | 8.7 KiB | 00m00s [ 86/153] ocaml-srpm-macros-0:9-3.fc40. 100% | 453.7 KiB/s | 9.1 KiB | 00m00s [ 87/153] openblas-srpm-macros-0:2-17.f 100% | 273.6 KiB/s | 7.7 KiB | 00m00s [ 88/153] package-notes-srpm-macros-0:0 100% | 331.5 KiB/s | 9.9 KiB | 00m00s [ 89/153] perl-srpm-macros-0:1-53.fc40. 100% | 246.5 KiB/s | 8.4 KiB | 00m00s [ 90/153] pyproject-srpm-macros-0:1.12. 100% | 504.8 KiB/s | 13.6 KiB | 00m00s [ 91/153] python-srpm-macros-0:3.12-9.f 100% 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| 4.4 MiB/s | 108.3 KiB | 00m00s [105/153] libtirpc-0:1.3.4-1.rc3.fc41.x 100% | 2.4 MiB/s | 92.5 KiB | 00m00s [106/153] openssl-libs-1:3.2.1-6.fc41.x 100% | 20.9 MiB/s | 2.3 MiB | 00m00s [107/153] ca-certificates-0:2023.2.62_v 100% | 12.8 MiB/s | 862.1 KiB | 00m00s [108/153] crypto-policies-0:20240320-1. 100% | 2.6 MiB/s | 64.9 KiB | 00m00s [109/153] ncurses-base-0:6.4-12.2024012 100% | 1.8 MiB/s | 63.8 KiB | 00m00s [110/153] krb5-libs-0:1.21.2-5.fc40.x86 100% | 15.3 MiB/s | 751.4 KiB | 00m00s [111/153] libcom_err-0:1.47.0-5.fc40.x8 100% | 1.3 MiB/s | 25.4 KiB | 00m00s [112/153] libsepol-0:3.6-3.fc40.x86_64 100% | 9.0 MiB/s | 340.1 KiB | 00m00s [113/153] pcre2-0:10.43-1.fc41.x86_64 100% | 8.1 MiB/s | 241.9 KiB | 00m00s [114/153] pcre2-syntax-0:10.43-1.fc41.n 100% | 5.6 MiB/s | 148.8 KiB | 00m00s [115/153] cracklib-0:2.9.11-5.fc40.x86_ 100% | 3.1 MiB/s | 81.6 KiB | 00m00s [116/153] libxml2-0:2.12.6-1.fc41.x86_6 100% | 15.6 MiB/s | 686.3 KiB | 00m00s [117/153] keyutils-libs-0:1.6.3-3.fc40. 100% | 1.1 MiB/s | 31.5 KiB | 00m00s [118/153] libverto-0:0.3.2-8.fc40.x86_6 100% | 555.1 KiB/s | 20.5 KiB | 00m00s [119/153] basesystem-0:11-20.fc40.noarc 100% | 266.2 KiB/s | 7.2 KiB | 00m00s [120/153] filesystem-0:3.18-9.fc41.x86_ 100% | 20.6 MiB/s | 1.1 MiB | 00m00s [121/153] gmp-1:6.3.0-1.fc41.x86_64 100% | 7.0 MiB/s | 316.8 KiB | 00m00s [122/153] mpfr-0:4.2.1-3.fc40.x86_64 100% | 6.0 MiB/s | 349.0 KiB | 00m00s [123/153] elfutils-default-yama-scope-0 100% | 382.3 KiB/s | 13.4 KiB | 00m00s [124/153] libstdc++-0:14.0.1-0.15.fc41. 100% | 14.8 MiB/s | 880.7 KiB | 00m00s [125/153] p11-kit-0:0.25.3-4.fc40.x86_6 100% | 11.1 MiB/s | 475.5 KiB | 00m00s [126/153] p11-kit-trust-0:0.25.3-4.fc40 100% | 2.9 MiB/s | 131.5 KiB | 00m00s [127/153] jansson-0:2.13.1-9.fc40.x86_6 100% | 2.0 MiB/s | 44.2 KiB | 00m00s [128/153] alternatives-0:1.26-3.fc40.x8 100% | 1.6 MiB/s | 39.9 KiB | 00m00s [129/153] lua-libs-0:5.4.6-5.fc40.x86_6 100% | 4.6 MiB/s | 131.9 KiB | 00m00s 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Running transaction [ 1/155] Verify package files 100% | 768.0 B/s | 153.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-9.fc41.x86_64 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-9.fc41.x86_64 [ 2/155] Prepare transaction 100% | 1.7 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:14.0.1-0. 100% | 88.6 MiB/s | 272.2 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.0.1-0.15.fc41.x86_64 >>> Stop post-install scriptlet: libgcc-0:14.0.1-0.15.fc41.x86_64 [ 4/155] Installing crypto-policies-0: 100% | 11.0 MiB/s | 146.2 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20240320-1.git58e3d95.fc41 >>> Stop post-install scriptlet: crypto-policies-0:20240320-1.git58e3d95.fc41.no [ 5/155] Installing fedora-release-ide 100% | 929.7 KiB/s | 952.0 B | 00m00s [ 6/155] Installing fedora-repos-rawhi 100% | 2.4 MiB/s | 2.4 KiB | 00m00s [ 7/155] Installing fedora-gpg-keys-0: 100% | 16.6 MiB/s | 170.1 KiB | 00m00s [ 8/155] Installing 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118.4 MiB/s | 969.7 KiB | 00m00s >>> Running pre-install scriptlet: glibc-0:2.39.9000-12.fc41.x86_64 >>> Stop pre-install scriptlet: glibc-0:2.39.9000-12.fc41.x86_64 [ 20/155] Installing glibc-0:2.39.9000- 100% | 110.1 MiB/s | 6.7 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.39.9000-12.fc41.x86_64 >>> Stop post-install scriptlet: glibc-0:2.39.9000-12.fc41.x86_64 [ 21/155] Installing bash-0:5.2.26-3.fc 100% | 199.1 MiB/s | 8.2 MiB | 00m00s >>> Running post-install scriptlet: bash-0:5.2.26-3.fc40.x86_64 >>> Stop post-install scriptlet: bash-0:5.2.26-3.fc40.x86_64 [ 22/155] Installing glibc-common-0:2.3 100% | 93.4 MiB/s | 1.0 MiB | 00m00s [ 23/155] Installing glibc-gconv-extra- 100% | 98.3 MiB/s | 7.9 MiB | 00m00s >>> Running post-install scriptlet: glibc-gconv-extra-0:2.39.9000-12.fc41.x86_64 >>> Stop post-install scriptlet: glibc-gconv-extra-0:2.39.9000-12.fc41.x86_64 [ 24/155] Installing zlib-ng-compat-0:2 100% | 65.8 MiB/s | 134.8 KiB | 00m00s [ 25/155] Installing 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libnghttp2-0:1.61. 100% | 81.7 MiB/s | 167.2 KiB | 00m00s [ 96/155] Installing xxhash-libs-0:0.8. 100% | 87.8 MiB/s | 89.9 KiB | 00m00s [ 97/155] Installing libbrotli-0:1.1.0- 100% | 203.1 MiB/s | 831.8 KiB | 00m00s [ 98/155] Installing libtool-ltdl-0:2.4 100% | 65.7 MiB/s | 67.3 KiB | 00m00s [ 99/155] Installing pkgconf-m4-0:2.1.0 100% | 0.0 B/s | 14.3 KiB | 00m00s [100/155] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s [101/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [102/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [103/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 768.0 B | 00m00s [104/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [105/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [106/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [107/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [108/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [109/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [110/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [111/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [112/155] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [113/155] Installing coreutils-common-0 100% | 228.4 MiB/s | 11.2 MiB | 00m00s [114/155] Installing openssl-libs-1:3.2 100% | 278.4 MiB/s | 7.8 MiB | 00m00s [115/155] Installing coreutils-0:9.5-1. 100% | 139.7 MiB/s | 5.6 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.n >>> Stop pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noar [116/155] Installing ca-certificates-0: 100% | 2.3 MiB/s | 2.3 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40. >>> Stop post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noa [117/155] Installing krb5-libs-0:1.21.2 100% | 191.2 MiB/s | 2.3 MiB | 00m00s [118/155] Installing libtirpc-0:1.3.4-1 100% | 99.9 MiB/s | 204.6 KiB | 00m00s [119/155] Installing gzip-0:1.13-1.fc40 100% | 127.1 MiB/s | 390.6 KiB | 00m00s [120/155] Installing authselect-libs-0: 100% | 90.4 MiB/s | 833.2 KiB | 00m00s [121/155] Installing libarchive-0:3.7.2 100% | 223.8 MiB/s | 916.6 KiB | 00m00s [122/155] Installing authselect-0:1.5.0 100% | 51.4 MiB/s | 157.9 KiB | 00m00s [123/155] Installing cracklib-0:2.9.11- 100% | 34.9 MiB/s | 250.3 KiB | 00m00s [124/155] Installing libpwquality-0:1.4 100% | 52.5 MiB/s | 430.1 KiB | 00m00s [125/155] Installing libnsl2-0:2.0.1-1. 100% | 57.7 MiB/s | 59.0 KiB | 00m00s [126/155] Installing pam-0:1.6.1-1.fc41 100% | 82.5 MiB/s | 1.8 MiB | 00m00s [127/155] Installing libssh-0:0.10.6-6. 100% | 167.8 MiB/s | 515.4 KiB | 00m00s [128/155] Installing rpm-sequoia-0:1.6. 100% | 278.7 MiB/s | 2.2 MiB | 00m00s [129/155] Installing rpm-libs-0:4.19.1. 100% | 231.6 MiB/s | 711.4 KiB | 00m00s [130/155] Installing libevent-0:2.1.12- 100% | 219.6 MiB/s | 899.4 KiB | 00m00s [131/155] Installing openldap-0:2.6.7-1 100% | 156.0 MiB/s | 638.9 KiB | 00m00s [132/155] Installing libcurl-0:8.7.1-1. 100% | 194.0 MiB/s | 794.6 KiB | 00m00s [133/155] Installing elfutils-libs-0:0. 100% | 210.9 MiB/s | 648.0 KiB | 00m00s [134/155] Installing elfutils-debuginfo 100% | 65.3 MiB/s | 66.9 KiB | 00m00s [135/155] Installing binutils-gold-0:2. 100% | 101.5 MiB/s | 2.0 MiB | 00m00s >>> Running post-install scriptlet: binutils-gold-0:2.42.50-6.fc41.x86_64 >>> Stop post-install scriptlet: binutils-gold-0:2.42.50-6.fc41.x86_64 [136/155] Installing binutils-0:2.42.50 100% | 269.8 MiB/s | 27.2 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.42.50-6.fc41.x86_64 >>> Stop post-install scriptlet: binutils-0:2.42.50-6.fc41.x86_64 [137/155] Installing elfutils-0:0.191-5 100% | 232.0 MiB/s | 2.6 MiB | 00m00s [138/155] Installing gdb-minimal-0:14.2 100% | 316.6 MiB/s | 12.7 MiB | 00m00s [139/155] Installing debugedit-0:5.0-14 100% | 98.5 MiB/s | 201.7 KiB | 00m00s [140/155] Installing rpm-build-libs-0:4 100% | 97.3 MiB/s | 199.2 KiB | 00m00s [141/155] Installing curl-0:8.7.1-1.fc4 100% | 37.1 MiB/s | 760.6 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Stop pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 [142/155] Installing rpm-0:4.19.1.1-1.f 100% | 88.8 MiB/s | 2.4 MiB | 00m00s [143/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [144/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [145/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [146/155] Installing fonts-srpm-macros- 100% | 55.1 MiB/s | 56.5 KiB | 00m00s [147/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.3 KiB | 00m00s [148/155] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [149/155] Installing python-srpm-macros 100% | 50.5 MiB/s | 51.7 KiB | 00m00s [150/155] Installing redhat-rpm-config- 100% | 61.8 MiB/s | 189.7 KiB | 00m00s [151/155] Installing rpm-build-0:4.19.1 100% | 44.4 MiB/s | 182.0 KiB | 00m00s [152/155] Installing pyproject-srpm-mac 100% | 2.0 MiB/s | 2.1 KiB | 00m00s [153/155] Installing util-linux-0:2.40- 100% | 91.2 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40-13.fc41.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40-13.fc41.x86_64 [154/155] Installing which-0:2.21-41.fc 100% | 40.3 MiB/s | 82.4 KiB | 00m00s [155/155] Installing info-0:7.1-2.fc40. 100% | 286.5 KiB/s | 358.2 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-9.fc41.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-9.fc41.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.f >>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc41.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc41.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-12.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-12.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 Warning: skipped PGP checks for 153 package(s). Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-3.fc40.x86_64 ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-1.fc41.x86_64 authselect-1.5.0-5.fc41.x86_64 authselect-libs-1.5.0-5.fc41.x86_64 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.x86_64 binutils-2.42.50-6.fc41.x86_64 binutils-gold-2.42.50-6.fc41.x86_64 bzip2-1.0.8-18.fc40.x86_64 bzip2-libs-1.0.8-18.fc40.x86_64 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.5-1.fc41.x86_64 coreutils-common-9.5-1.fc41.x86_64 cpio-2.15-1.fc40.x86_64 cracklib-2.9.11-5.fc40.x86_64 crypto-policies-20240320-1.git58e3d95.fc41.noarch curl-8.7.1-1.fc41.x86_64 cyrus-sasl-lib-2.1.28-19.fc40.x86_64 debugedit-5.0-14.fc40.x86_64 diffutils-3.10-5.fc40.x86_64 dwz-0.15-6.fc40.x86_64 ed-1.20.1-1.fc41.x86_64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-5.fc41.x86_64 elfutils-debuginfod-client-0.191-5.fc41.x86_64 elfutils-default-yama-scope-0.191-5.fc41.noarch elfutils-libelf-0.191-5.fc41.x86_64 elfutils-libs-0.191-5.fc41.x86_64 fedora-gpg-keys-41-0.1.noarch fedora-release-41-0.9.noarch fedora-release-common-41-0.9.noarch fedora-release-identity-basic-41-0.9.noarch fedora-repos-41-0.1.noarch fedora-repos-rawhide-41-0.1.noarch file-5.45-5.fc41.x86_64 file-libs-5.45-5.fc41.x86_64 filesystem-3.18-9.fc41.x86_64 findutils-4.9.0-8.fc40.x86_64 fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.x86_64 gdb-minimal-14.2-4.fc41.x86_64 gdbm-1.23-6.fc40.x86_64 gdbm-libs-1.23-6.fc40.x86_64 ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-12.fc41.x86_64 glibc-common-2.39.9000-12.fc41.x86_64 glibc-gconv-extra-2.39.9000-12.fc41.x86_64 glibc-minimal-langpack-2.39.9000-12.fc41.x86_64 gmp-6.3.0-1.fc41.x86_64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-7.fc40.x86_64 gzip-1.13-1.fc40.x86_64 info-7.1-2.fc40.x86_64 jansson-2.13.1-9.fc40.x86_64 kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.x86_64 krb5-libs-1.21.2-5.fc40.x86_64 libacl-2.3.2-1.fc40.x86_64 libarchive-3.7.2-3.fc41.x86_64 libattr-2.5.2-3.fc40.x86_64 libblkid-2.40-13.fc41.x86_64 libbrotli-1.1.0-3.fc40.x86_64 libcap-2.69-8.fc41.x86_64 libcap-ng-0.8.5-1.fc41.x86_64 libcom_err-1.47.0-5.fc40.x86_64 libcurl-8.7.1-1.fc41.x86_64 libeconf-0.6.2-1.fc41.x86_64 libevent-2.1.12-12.fc40.x86_64 libfdisk-2.40-13.fc41.x86_64 libffi-3.4.6-1.fc41.x86_64 libgcc-14.0.1-0.15.fc41.x86_64 libgomp-14.0.1-0.15.fc41.x86_64 libidn2-2.3.7-1.fc40.x86_64 libmount-2.40-13.fc41.x86_64 libnghttp2-1.61.0-1.fc41.x86_64 libnsl2-2.0.1-1.fc40.x86_64 libpkgconf-2.1.0-1.fc40.x86_64 libpsl-0.21.5-3.fc40.x86_64 libpwquality-1.4.5-9.fc40.x86_64 libselinux-3.6-4.fc40.x86_64 libsemanage-3.6-3.fc40.x86_64 libsepol-3.6-3.fc40.x86_64 libsmartcols-2.40-13.fc41.x86_64 libssh-0.10.6-6.fc41.x86_64 libssh-config-0.10.6-6.fc41.noarch libstdc++-14.0.1-0.15.fc41.x86_64 libtasn1-4.19.0-6.fc40.x86_64 libtirpc-1.3.4-1.rc3.fc41.x86_64 libtool-ltdl-2.4.7-10.fc40.x86_64 libunistring-1.1-7.fc41.x86_64 libutempter-1.2.1-13.fc40.x86_64 libuuid-2.40-13.fc41.x86_64 libverto-0.3.2-8.fc40.x86_64 libxcrypt-4.4.36-5.fc40.x86_64 libxml2-2.12.6-1.fc41.x86_64 libzstd-1.5.6-1.fc41.x86_64 lua-libs-5.4.6-5.fc40.x86_64 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.x86_64 mpfr-4.2.1-3.fc40.x86_64 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.x86_64 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.7-1.fc40.x86_64 openssl-libs-3.2.1-6.fc41.x86_64 p11-kit-0.25.3-4.fc40.x86_64 p11-kit-trust-0.25.3-4.fc40.x86_64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-1.fc41.x86_64 pam-libs-1.6.1-1.fc41.x86_64 patch-2.7.6-24.fc40.x86_64 pcre2-10.43-1.fc41.x86_64 pcre2-syntax-10.43-1.fc41.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.0-1.fc40.x86_64 pkgconf-m4-2.1.0-1.fc40.noarch pkgconf-pkg-config-2.1.0-1.fc40.x86_64 popt-1.19-6.fc40.x86_64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-9.fc41.noarch qt5-srpm-macros-5.15.13-1.fc41.noarch qt6-srpm-macros-6.7.0-1.fc41.noarch readline-8.2-8.fc40.x86_64 redhat-rpm-config-288-1.fc41.noarch rpm-4.19.1.1-1.fc40.x86_64 rpm-build-4.19.1.1-1.fc40.x86_64 rpm-build-libs-4.19.1.1-1.fc40.x86_64 rpm-libs-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 rust-srpm-macros-26.2-1.fc41.noarch sed-4.9-1.fc40.x86_64 setup-2.14.5-2.fc40.noarch shadow-utils-4.15.1-2.fc41.x86_64 sqlite-libs-3.45.2-1.fc41.x86_64 systemd-libs-255.4-1.fc41.x86_64 tar-1.35-3.fc40.x86_64 unzip-6.0-63.fc40.x86_64 util-linux-2.40-13.fc41.x86_64 util-linux-core-2.40-13.fc41.x86_64 which-2.21-41.fc40.x86_64 xxhash-libs-0.8.2-2.fc40.x86_64 xz-5.4.6-3.fc41.x86_64 xz-libs-5.4.6-3.fc41.x86_64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.x86_64 zlib-ng-compat-2.1.6-2.fc40.x86_64 zstd-1.5.6-1.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1713571200 Wrote: /builddir/build/SRPMS/snakemake-8.10.8-1.fc41.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-40-x86_64-1713614647.004945/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-40-x86_64-1713614647.004945/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-51g8zrth/snakemake/snakemake.spec) Config(child) 1 minutes 18 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/snakemake-8.10.8-1.fc41.src.rpm) Config(fedora-40-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-bootstrap-1713614647.004945/root. INFO: reusing tmpfs at /var/lib/mock/fedora-40-x86_64-bootstrap-1713614647.004945/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-1713614647.004945/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 python3-dnf-4.19.0-1.fc40.noarch yum-4.19.0-1.fc40.noarch dnf5-5.1.17-1.fc41.x86_64 dnf5-plugins-5.1.17-1.fc41.x86_64 Finish: chroot init Start: build phase for snakemake-8.10.8-1.fc41.src.rpm Start: build setup for snakemake-8.10.8-1.fc41.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1713571200 Wrote: /builddir/build/SRPMS/snakemake-8.10.8-1.fc41.src.rpm Updating and loading repositories: Additional repo http_kojipkgs_fedorapr 100% | 44.8 KiB/s | 4.1 KiB | 00m00s updates 100% | 49.5 KiB/s | 17.3 KiB | 00m00s fedora 100% | 181.8 KiB/s | 20.5 KiB | 00m00s Copr repository 100% | 53.0 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: help2man noarch 1.49.3-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 415.6 KiB python3-boto3 noarch 1.34.87-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 MiB python3-devel x86_64 3.12.3-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB python3-flask noarch 1:3.0.3-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 876.2 KiB python3-google-cloud-storage noarch 2.14.0-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB python3-pandas x86_64 2.2.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 42.4 MiB python3-pytest noarch 7.4.3-5.fc41 copr_base 15.0 MiB python3-snakemake-executor-plugin-cluster-generic noarch 1.0.9-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.4 KiB python3-snakemake-storage-plugin-s3 noarch 0.2.11-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.4 KiB vim-filesystem noarch 2:9.1.309-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.0 B Installing dependencies: abseil-cpp x86_64 20240116.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB c-ares x86_64 1.28.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 420.5 KiB expat x86_64 2.6.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 280.8 KiB flexiblas x86_64 3.4.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 46.9 KiB flexiblas-netlib x86_64 3.4.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.4 MiB flexiblas-openblas-openmp x86_64 3.4.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.3 KiB google-crc32c x86_64 1.1.2-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 24.1 KiB groff-base x86_64 1.23.0-6.fc40 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594.6 KiB python3-iniconfig noarch 1.1.1-16.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20.5 KiB python3-itsdangerous noarch 2.1.2-7.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 95.5 KiB python3-jinja2 noarch 3.1.3-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB python3-jmespath noarch 1.0.1-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 148.5 KiB python3-libs x86_64 3.12.3-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.9 MiB python3-markupsafe x86_64 2.1.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 57.3 KiB python3-numexpr x86_64 2.8.5-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 568.3 KiB python3-numpy x86_64 1:1.26.4-3.fc41 copr_base 43.9 MiB python3-numpy-f2py x86_64 1:1.26.4-3.fc41 copr_base 2.7 MiB python3-packaging noarch 24.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 424.8 KiB python3-pluggy noarch 1.3.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 182.5 KiB python3-pooch noarch 1.5.2-15.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 548.7 KiB python3-protobuf x86_64 3.19.6-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 MiB python3-pyasn1 noarch 0.5.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 881.5 KiB python3-pyasn1-modules noarch 0.5.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB python3-pytz noarch 2024.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 225.8 KiB python3-requests noarch 2.31.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 462.4 KiB python3-reretry noarch 0.11.8-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 32.1 KiB python3-rpm-generators noarch 14-10.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.7 KiB python3-rpm-macros noarch 3.12-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.4 KiB python3-rsa noarch 4.9-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 240.7 KiB python3-s3transfer noarch 0.10.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 619.9 KiB python3-scipy x86_64 1.11.3-7.fc41 copr_base 62.6 MiB python3-setuptools noarch 69.2.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 MiB python3-six noarch 1.16.0-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 117.7 KiB python3-snakemake-interface-common noarch 1.17.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 95.9 KiB python3-snakemake-interface-executor-plugins noarch 9.1.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.4 KiB python3-snakemake-interface-storage-plugins noarch 3.2.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.9 KiB python3-throttler noarch 1.2.2-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 33.5 KiB python3-urllib3 noarch 1.26.18-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 996.2 KiB python3-werkzeug noarch 3.0.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB python3-wrapt x86_64 1.16.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 196.0 KiB re2 x86_64 1:20220601-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 492.9 KiB tzdata noarch 2024a-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB Transaction Summary: Installing: 141 packages Total size of inbound packages is 80 MiB. Need to download 80 MiB. After this operation 430 MiB will be used (install 430 MiB, remove 0 B). [ 1/141] help2man-0:1.49.3-5.fc40.noar 100% | 33.4 KiB/s | 216.8 KiB | 00m06s [ 2/141] python3-devel-0:3.12.3-2.fc41 100% | 42.2 KiB/s | 274.9 KiB | 00m07s [ 3/141] python3-boto3-0:1.34.87-1.fc4 100% | 53.7 KiB/s | 349.8 KiB | 00m07s [ 4/141] python3-flask-1:3.0.3-1.fc41. 100% | 8.2 MiB/s | 194.2 KiB | 00m00s [ 5/141] python3-google-cloud-storage- 100% | 5.3 MiB/s | 189.2 KiB | 00m00s [ 6/141] python3-snakemake-executor-pl 100% | 871.0 KiB/s | 23.5 KiB | 00m00s [ 7/141] python3-snakemake-storage-plu 100% | 374.9 KiB/s | 23.2 KiB | 00m00s [ 8/141] python3-pytest-0:7.4.3-5.fc41 100% | 14.9 MiB/s | 1.8 MiB | 00m00s [ 9/141] vim-filesystem-2:9.1.309-1.fc 100% | 340.6 KiB/s | 17.4 KiB | 00m00s [ 10/141] python3-pandas-0:2.2.1-2.fc41 100% | 26.8 MiB/s | 7.8 MiB | 00m00s [ 11/141] python3-libs-0:3.12.3-2.fc41. 100% | 60.1 MiB/s | 8.8 MiB | 00m00s [ 12/141] python3-snakemake-interface-s 100% | 1.4 MiB/s | 38.5 KiB | 00m00s [ 13/141] python-rpm-macros-0:3.12-9.fc 100% | 693.1 KiB/s | 18.0 KiB | 00m00s [ 14/141] python3-rpm-macros-0:3.12-9.f 100% | 328.1 KiB/s | 12.8 KiB | 00m00s [ 15/141] python3-iniconfig-0:1.1.1-16. 100% | 746.9 KiB/s | 17.9 KiB | 00m00s [ 16/141] python3-packaging-0:24.0-1.fc 100% | 3.3 MiB/s | 116.4 KiB | 00m00s [ 17/141] python3-botocore-0:1.34.87-1. 100% | 34.0 MiB/s | 6.7 MiB | 00m00s [ 18/141] python3-pluggy-0:1.3.0-3.fc40 100% | 1.6 MiB/s | 49.5 KiB | 00m00s [ 19/141] python3-snakemake-interface-c 100% | 2.1 MiB/s | 44.2 KiB | 00m00s [ 20/141] python3-urllib3-0:1.26.18-3.f 100% | 5.8 MiB/s | 253.6 KiB | 00m00s [ 21/141] python3-reretry-0:0.11.8-8.fc 100% | 357.6 KiB/s | 18.2 KiB | 00m00s [ 22/141] python3-throttler-0:1.2.2-9.f 100% | 769.5 KiB/s | 22.3 KiB | 00m00s [ 23/141] python3-wrapt-0:1.16.0-3.fc40 100% | 2.5 MiB/s | 66.4 KiB | 00m00s [ 24/141] python3-argparse-dataclass-0: 100% | 789.3 KiB/s | 19.7 KiB | 00m00s [ 25/141] python3-configargparse-0:1.7- 100% | 1.8 MiB/s | 52.4 KiB | 00m00s [ 26/141] python3-snakemake-interface-e 100% | 1.6 MiB/s 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100% | 4.4 KiB/s | 27.2 KiB | 00m06s -------------------------------------------------------------------------------- [141/141] Total 100% | 6.2 MiB/s | 80.2 MiB | 00m13s Running transaction [ 1/143] Verify package files 100% | 491.0 B/s | 141.0 B | 00m00s [ 2/143] Prepare transaction 100% | 824.0 B/s | 141.0 B | 00m00s [ 3/143] Installing tzdata-0:2024a-5.f 100% | 27.1 MiB/s | 1.9 MiB | 00m00s [ 4/143] Installing libgfortran-0:14.0 100% | 294.3 MiB/s | 2.9 MiB | 00m00s [ 5/143] Installing python-rpm-macros- 100% | 22.3 MiB/s | 22.8 KiB | 00m00s [ 6/143] Installing python3-rpm-macros 100% | 6.5 MiB/s | 6.7 KiB | 00m00s [ 7/143] Installing pyproject-rpm-macr 100% | 98.4 MiB/s | 100.8 KiB | 00m00s [ 8/143] Installing ncurses-0:6.4-12.2 100% | 38.3 MiB/s | 627.6 KiB | 00m00s >>> Running pre-install scriptlet: groff-base-0:1.23.0-6.fc40.x86_64 >>> Stop pre-install scriptlet: groff-base-0:1.23.0-6.fc40.x86_64 [ 9/143] Installing groff-base-0:1.23. 100% | 113.5 MiB/s | 3.9 MiB | 00m00s >>> 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Finish: build setup for snakemake-8.10.8-1.fc41.src.rpm Start: rpmbuild snakemake-8.10.8-1.fc41.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1713571200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.cfRpaY + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf snakemake-8.10.8 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-8.10.8.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd snakemake-8.10.8 + rm -rf /builddir/build/BUILD/snakemake-8.10.8-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-8.10.8-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP . recursedown('.') recursedown('./.github') recursedown('./.github/ISSUE_TEMPLATE') recursedown('./.github/workflows') recursedown('./.github/workflows/scripts') recursedown('./apidocs') recursedown('./apidocs/_templates') 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recursedown('./tests/test_persistent_dict') recursedown('./tests/test_persistent_dict/expected-results') recursedown('./tests/test_pipe_depend') recursedown('./tests/test_pipe_depend/expected-results') recursedown('./tests/test_pipes') recursedown('./tests/test_pipes/expected-results') recursedown('./tests/test_pipes2') recursedown('./tests/test_pipes2/expected-results') recursedown('./tests/test_pipes_fail') recursedown('./tests/test_pipes_fail/expected-results') recursedown('./tests/test_pipes_multiple') recursedown('./tests/test_pipes_multiple/expected-results') recursedown('./tests/test_prebuilt_conda_script') recursedown('./tests/test_prebuilt_conda_script/dummy_package') recursedown('./tests/test_prebuilt_conda_script/dummy_package/src') recursedown('./tests/test_prebuilt_conda_script/dummy_package/src/dummy') recursedown('./tests/test_prebuilt_conda_script/dummy_package/src/dummy.egg-info') recursedown('./tests/test_prebuilt_conda_script/expected-results') recursedown('./tests/test_profile') recursedown('./tests/test_profile/expected-results') recursedown('./tests/test_protected_symlink_output') recursedown('./tests/test_protected_symlink_output/expected-results') recursedown('./tests/test_queue_input') recursedown('./tests/test_queue_input/expected-results') recursedown('./tests/test_r_wrapper') recursedown('./tests/test_remote_auto') recursedown('./tests/test_remote_auto/expected-results') recursedown('./tests/test_remote_azure') recursedown('./tests/test_remote_gs') recursedown('./tests/test_remote_gs/expected-results') recursedown('./tests/test_remote_irods') recursedown('./tests/test_remote_irods/expected-results') recursedown('./tests/test_remote_irods/setup-data') recursedown('./tests/test_remote_irods/test-data') recursedown('./tests/test_remote_log') recursedown('./tests/test_remote_log/expected-results') recursedown('./tests/test_remote_ncbi') recursedown('./tests/test_remote_ncbi/expected-results') recursedown('./tests/test_remote_ncbi_simple') recursedown('./tests/test_remote_ncbi_simple/expected-results') recursedown('./tests/test_remote_sftp') recursedown('./tests/test_remote_sftp/expected-results') recursedown('./tests/test_remote_zenodo') recursedown('./tests/test_remote_zenodo/expected-results') recursedown('./tests/test_report') recursedown('./tests/test_report/.snakemake') recursedown('./tests/test_report/.snakemake/metadata') recursedown('./tests/test_report/data') recursedown('./tests/test_report/envs') recursedown('./tests/test_report/expected-results') recursedown('./tests/test_report/report') recursedown('./tests/test_report/testdir') recursedown('./tests/test_report_dir') recursedown('./tests/test_report_dir/expected-results') recursedown('./tests/test_report_dir/test') recursedown('./tests/test_report_dir/test/js') recursedown('./tests/test_report_display_code') recursedown('./tests/test_report_display_code/expected-results') recursedown('./tests/test_report_zip') recursedown('./tests/test_report_zip/.snakemake') recursedown('./tests/test_report_zip/.snakemake/metadata') recursedown('./tests/test_report_zip/data') recursedown('./tests/test_report_zip/envs') recursedown('./tests/test_report_zip/expected-results') recursedown('./tests/test_report_zip/report') recursedown('./tests/test_report_zip/testdir') recursedown('./tests/test_resource_string_in_cli_or_profile') recursedown('./tests/test_resource_string_in_cli_or_profile/expected-results') recursedown('./tests/test_resource_string_in_cli_or_profile/profiles') recursedown('./tests/test_resource_tbdstring') recursedown('./tests/test_restartable_job_cmd_exit_1') recursedown('./tests/test_restartable_job_cmd_exit_1/expected-results') recursedown('./tests/test_restartable_job_qsub_exit_1') recursedown('./tests/test_restartable_job_qsub_exit_1/expected-results') recursedown('./tests/test_retries') recursedown('./tests/test_retries/expected-results') recursedown('./tests/test_retries_not_overriden') recursedown('./tests/test_retries_not_overriden/expected-results') recursedown('./tests/test_rule_defined_in_for_loop') recursedown('./tests/test_rule_defined_in_for_loop/expected-results') recursedown('./tests/test_rule_inheritance_globals') recursedown('./tests/test_rule_inheritance_globals/.snakemake') recursedown('./tests/test_rule_inheritance_globals/.snakemake/metadata') recursedown('./tests/test_rule_inheritance_globals/expected-results') recursedown('./tests/test_ruledag') recursedown('./tests/test_ruledeps') recursedown('./tests/test_ruledeps/expected-results') recursedown('./tests/test_run_namedlist') recursedown('./tests/test_run_namedlist/expected-results') recursedown('./tests/test_runtime_conversion_from_workflow_profile') recursedown('./tests/test_runtime_conversion_from_workflow_profile/expected-results') recursedown('./tests/test_runtime_conversion_from_workflow_profile/workflow') recursedown('./tests/test_runtime_conversion_from_workflow_profile/workflow/profiles') recursedown('./tests/test_runtime_conversion_from_workflow_profile/workflow/profiles/default') recursedown('./tests/test_same_wildcard') recursedown('./tests/test_same_wildcard/expected-results') recursedown('./tests/test_scatter_gather') recursedown('./tests/test_scatter_gather/expected-results') recursedown('./tests/test_scatter_gather/expected-results/gathered') recursedown('./tests/test_scatter_gather/expected-results/splitted') recursedown('./tests/test_scatter_gather_multiple_processes') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/gathered') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_a') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_b') recursedown('./tests/test_scheduler_sequential_all_cores') recursedown('./tests/test_scheduler_sequential_all_cores/expected-results') recursedown('./tests/test_script') recursedown('./tests/test_script/envs') recursedown('./tests/test_script/expected-results') recursedown('./tests/test_script/scripts') recursedown('./tests/test_script_pre_py39') recursedown('./tests/test_script_pre_py39/expected-results') recursedown('./tests/test_script_py') recursedown('./tests/test_script_py/expected-results') recursedown('./tests/test_script_py/scripts') recursedown('./tests/test_service_jobs') recursedown('./tests/test_service_jobs/expected-results') recursedown('./tests/test_set_resources') recursedown('./tests/test_set_resources/expected-results') recursedown('./tests/test_set_resources_complex') recursedown('./tests/test_set_resources_complex/expected-results') recursedown('./tests/test_set_resources_complex/test-profile') recursedown('./tests/test_set_threads') recursedown('./tests/test_set_threads/expected-results') recursedown('./tests/test_shadow') recursedown('./tests/test_shadow/expected-results') recursedown('./tests/test_shadow_copy') recursedown('./tests/test_shadow_copy/expected-results') recursedown('./tests/test_shadow_prefix') recursedown('./tests/test_shadow_prefix/expected-results') recursedown('./tests/test_shadowed_log') recursedown('./tests/test_shadowed_log/expected-results') recursedown('./tests/test_shell') recursedown('./tests/test_shell/expected-results') recursedown('./tests/test_singularity') recursedown('./tests/test_singularity/expected-results') recursedown('./tests/test_singularity_conda') recursedown('./tests/test_singularity_conda/expected-results') recursedown('./tests/test_singularity_global') recursedown('./tests/test_singularity_global/expected-results') recursedown('./tests/test_singularity_module') recursedown('./tests/test_singularity_module/expected-results') recursedown('./tests/test_singularity_none') recursedown('./tests/test_singularity_none/expected-results') recursedown('./tests/test_slurm_mpi') recursedown('./tests/test_slurm_mpi/envs') recursedown('./tests/test_slurm_mpi/expected-results') recursedown('./tests/test_solver') recursedown('./tests/test_solver/expected-results') recursedown('./tests/test_source_path') recursedown('./tests/test_source_path/expected-results') recursedown('./tests/test_source_path/workflow') recursedown('./tests/test_source_path/workflow/resources') recursedown('./tests/test_spaces_in_fnames') recursedown('./tests/test_spaces_in_fnames/expected-results') recursedown('./tests/test_speed') recursedown('./tests/test_storage') recursedown('./tests/test_storage/expected-results') recursedown('./tests/test_storage_cleanup_local') recursedown('./tests/test_storage_cleanup_local/expected-results') recursedown('./tests/test_storage_cleanup_local/expected-results/fs-storage') recursedown('./tests/test_storage_localrule') recursedown('./tests/test_storage_localrule/expected-results') recursedown('./tests/test_storage_localrule/expected-results/fs-storage') recursedown('./tests/test_strict_mode') recursedown('./tests/test_strict_mode/expected-results') recursedown('./tests/test_string_resources') recursedown('./tests/test_string_resources/expected-results') recursedown('./tests/test_subworkflow_config') recursedown('./tests/test_subworkflow_config/expected-results') recursedown('./tests/test_subworkflows') recursedown('./tests/test_subworkflows/expected-results') recursedown('./tests/test_symlink_temp') recursedown('./tests/test_symlink_temp/expected-results') recursedown('./tests/test_symlink_time_handling') recursedown('./tests/test_symlink_time_handling/expected-results') recursedown('./tests/test_temp') recursedown('./tests/test_temp/expected-results') recursedown('./tests/test_temp_expand') recursedown('./tests/test_temp_expand/expected-results') recursedown('./tests/test_template_engine') recursedown('./tests/test_template_engine/expected-results') recursedown('./tests/test_tes') recursedown('./tests/test_tes/expected-results') recursedown('./tests/test_threads') recursedown('./tests/test_threads/expected-results') recursedown('./tests/test_threads0') recursedown('./tests/test_threads0/expected-results') recursedown('./tests/test_tibanna') recursedown('./tests/test_tibanna/expected-results') recursedown('./tests/test_tibanna/scripts') recursedown('./tests/test_tmpdir') recursedown('./tests/test_tmpdir/expected-results') recursedown('./tests/test_touch') recursedown('./tests/test_touch/expected-results') recursedown('./tests/test_touch_pipeline_with_temp_dir') recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results') recursedown('./tests/test_touch_remote_prefix') recursedown('./tests/test_touch_remote_prefix/expected-results') recursedown('./tests/test_touch_with_directories') recursedown('./tests/test_touch_with_directories/expected-results') recursedown('./tests/test_unpack_dict') recursedown('./tests/test_unpack_dict/expected-results') recursedown('./tests/test_unpack_list') recursedown('./tests/test_unpack_list/expected-results') recursedown('./tests/test_until') recursedown('./tests/test_until/expected-results') recursedown('./tests/test_update_config') recursedown('./tests/test_update_config/expected-results') recursedown('./tests/test_update_flag') recursedown('./tests/test_update_flag/expected-results') recursedown('./tests/test_url_include') recursedown('./tests/test_url_include/expected-results') recursedown('./tests/test_use_rule_same_module') recursedown('./tests/test_use_rule_same_module/expected-results') recursedown('./tests/test_validate') recursedown('./tests/test_validate/expected-results') recursedown('./tests/test_wildcard_count_ambiguity') recursedown('./tests/test_wildcard_count_ambiguity/expected-results') recursedown('./tests/test_wildcard_keyword') recursedown('./tests/test_wildcard_keyword/expected-results') recursedown('./tests/test_workflow_profile') recursedown('./tests/test_workflow_profile/dummy-general-profile') recursedown('./tests/test_workflow_profile/expected-results') recursedown('./tests/test_workflow_profile/workflow') recursedown('./tests/test_workflow_profile/workflow/profiles') recursedown('./tests/test_workflow_profile/workflow/profiles/default') recursedown('./tests/test_wrapper') recursedown('./tests/test_wrapper/expected-results') recursedown('./tests/test_xrootd') recursedown('./tests/test_yaml_config') recursedown('./tests/test_yaml_config/expected-results') + sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py + sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py + sed -r -i 's@python -m@"/usr/bin/python3 -m@g' tests/tests.py 'misc/nano/README.md' -> 'README-nano.md' 'misc/vim/README.md' -> 'README-vim.md' + for editor in nano vim + cp -vp misc/nano/README.md README-nano.md + for editor in nano vim + cp -vp misc/vim/README.md README-vim.md + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.NCP16r + umask 022 + cd /builddir/build/BUILD + cd snakemake-8.10.8 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.10.8/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.10.8-1.fc41.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 69.2.0) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info creating snakemake.egg-info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt writing manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement not satisfied: wheel Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/snakemake-8.10.8-1.fc41.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-8.10.8-1.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 51.2 KiB/s | 1.5 KiB | 00m00s updates 100% | 43.2 KiB/s | 17.3 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 25.3 KiB/s | 4.1 KiB | 00m00s fedora 100% | 140.7 KiB/s | 20.5 KiB | 00m00s Repositories loaded. Package "help2man-1.49.3-5.fc40.noarch" is already installed. Package "pyproject-rpm-macros-1.12.0-1.fc40.noarch" is already installed. Package "python3-devel-3.12.3-2.fc41.x86_64" is already installed. Package "python3-boto3-1.34.87-1.fc41.noarch" is already installed. Package "python3-flask-1:3.0.3-1.fc41.noarch" is already installed. Package "python3-google-cloud-storage-2.14.0-4.fc40.noarch" is already installed. Package "python3-packaging-24.0-1.fc41.noarch" is already installed. Package "python3-pandas-2.2.1-2.fc41.x86_64" is already installed. Package "python3-pytest-7.4.3-5.fc41.noarch" is already installed. Package "python3-setuptools-69.2.0-1.fc41.noarch" is already installed. Package "python3-snakemake-executor-plugin-cluster-generic-1.0.9-1.fc41.noarch" is already installed. Package "python3-snakemake-storage-plugin-s3-0.2.11-1.fc41.noarch" is already installed. Package "vim-filesystem-2:9.1.309-1.fc41.noarch" is already installed. Package Arch Version Repository Size Installing: python3-pip noarch 24.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.2 MiB python3-wheel noarch 1:0.43.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 513.0 KiB Transaction Summary: Installing: 2 packages Total size of inbound packages is 3 MiB. Need to download 3 MiB. After this operation 15 MiB will be used (install 15 MiB, remove 0 B). [1/2] python3-pip-0:24.0-2.fc41.noarch 100% | 423.6 KiB/s | 2.9 MiB | 00m07s [2/2] python3-wheel-1:0.43.0-1.fc41.noa 100% | 20.1 KiB/s | 148.7 KiB | 00m07s -------------------------------------------------------------------------------- [2/2] Total 100% | 423.8 KiB/s | 3.1 MiB | 00m07s Running transaction [1/4] Verify package files 100% | 200.0 B/s | 2.0 B | 00m00s [2/4] Prepare transaction 100% | 62.0 B/s | 2.0 B | 00m00s [3/4] Installing python3-wheel-1:0.43.0 100% | 52.0 MiB/s | 532.0 KiB | 00m00s [4/4] Installing python3-pip-0:24.0-2.f 100% | 102.3 MiB/s | 14.5 MiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-12.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-12.fc41.x86_64 Warning: skipped PGP checks for 2 package(s). Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1713571200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.MkUi4e + umask 022 + cd /builddir/build/BUILD + cd snakemake-8.10.8 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.10.8/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.10.8-1.fc41.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 69.2.0) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.10.8/snakemake-8.10.8.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling immutables from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: immutables Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: connection-pool >=0.0.3 Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: datrie Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: docutils Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: gitpython Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: humanfriendly Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.3) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: jsonschema Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: nbformat Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 24.0) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: psutil Handling pulp <2.9,>=2.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pulp <2.9,>=2.3.1 Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pyyaml Handling requests <3.0,>=2.8.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests <3.0,>=2.8.1 (installed: requests 2.31.0) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open <8.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: smart-open <8.0,>=3.0 Handling snakemake-interface-executor-plugins <10.0,>=9.1.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-executor-plugins <10.0,>=9.1.0 (installed: snakemake-interface-executor-plugins 9.1.1) Handling snakemake-interface-common <2.0,>=1.17.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-common <2.0,>=1.17.0 (installed: snakemake-interface-common 1.17.2) Handling snakemake-interface-storage-plugins <4.0,>=3.1.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-storage-plugins <4.0,>=3.1.0 (installed: snakemake-interface-storage-plugins 3.2.2) Handling snakemake-interface-report-plugins <2.0.0,>=1.0.0 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: snakemake-interface-report-plugins <2.0.0,>=1.0.0 Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: stopit Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: tabulate Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort <2.0,>=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: toposort <2.0,>=1.10 Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: yte <2.0,>=1.5.1 Handling dpath <3.0.0,>=2.1.6 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: dpath <3.0.0,>=2.1.6 Handling conda-inject <2.0,>=1.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: conda-inject <2.0,>=1.3.1 Handling slack-sdk ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: slack-sdk ; extra == 'messaging' Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pygments ; extra == 'reports' + cat /builddir/build/BUILD/snakemake-8.10.8-1.fc41.x86_64-pyproject-buildrequires + rm -rfv snakemake-8.10.8.dist-info/ removed 'snakemake-8.10.8.dist-info/entry_points.txt' removed 'snakemake-8.10.8.dist-info/top_level.txt' removed 'snakemake-8.10.8.dist-info/METADATA' removed 'snakemake-8.10.8.dist-info/LICENSE.md' removed directory 'snakemake-8.10.8.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-8.10.8-1.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 48.4 KiB/s | 20.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 696.0 B/s | 4.1 KiB | 00m06s Copr repository 100% | 41.5 KiB/s | 1.5 KiB | 00m00s updates 100% | 126.3 KiB/s | 17.3 KiB | 00m00s Repositories loaded. Package "help2man-1.49.3-5.fc40.noarch" is already installed. Package "pyproject-rpm-macros-1.12.0-1.fc40.noarch" is already installed. Package "python3-devel-3.12.3-2.fc41.x86_64" is already installed. Package "python3-appdirs-1.4.4-13.fc40.noarch" is already installed. Package "python3-boto3-1.34.87-1.fc41.noarch" is already installed. Package "python3-configargparse-1.7-3.fc40.noarch" is already installed. Package "python3-flask-1:3.0.3-1.fc41.noarch" is already installed. Package "python3-google-cloud-storage-2.14.0-4.fc40.noarch" is already installed. Package "python3-packaging-24.0-1.fc41.noarch" is already installed. Package "python3-pandas-2.2.1-2.fc41.x86_64" is already installed. Package "python3-pip-24.0-2.fc41.noarch" is already installed. Package "python3-pytest-7.4.3-5.fc41.noarch" is already installed. Package "python3-reretry-0.11.8-8.fc40.noarch" is already installed. Package "python3-setuptools-69.2.0-1.fc41.noarch" is already installed. Package "python3-snakemake-executor-plugin-cluster-generic-1.0.9-1.fc41.noarch" is already installed. Package "python3-snakemake-storage-plugin-s3-0.2.11-1.fc41.noarch" is already installed. Package "python3-throttler-1.2.2-9.fc40.noarch" is already installed. Package "python3-wheel-1:0.43.0-1.fc41.noarch" is already installed. Package "python3-wrapt-1.16.0-3.fc40.x86_64" is already installed. Package "vim-filesystem-2:9.1.309-1.fc41.noarch" is already installed. Package Arch Version Repository Size Installing: python3-GitPython noarch 3.1.40-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB python3-conda-inject noarch 1.3.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 23.0 KiB python3-connection_pool noarch 0.0.3-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21.1 KiB python3-datrie x86_64 0.8.2-25.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 444.8 KiB python3-docutils noarch 0.20.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 MiB python3-dpath noarch 2.1.6-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 92.7 KiB python3-humanfriendly noarch 10.0-10.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 549.7 KiB python3-immutables x86_64 0.20-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 184.4 KiB python3-jsonschema noarch 4.19.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 851.4 KiB python3-nbformat noarch 5.9.2-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 556.3 KiB python3-psutil x86_64 5.9.8-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB python3-pulp noarch 2.8.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB python3-pygments noarch 2.17.2-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.3 MiB python3-pyyaml x86_64 6.0.1-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 786.4 KiB python3-slackclient noarch 3.27.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.9 MiB python3-smart_open noarch 7.0.4-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 491.3 KiB python3-snakemake-interface-report-plugins noarch 1.0.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30.6 KiB python3-stopit noarch 1.1.2-10.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 65.1 KiB python3-tabulate noarch 0.9.0-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 343.7 KiB python3-toposort noarch 1.10-10.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 28.5 KiB python3-yte noarch 1.5.4-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 60.5 KiB Installing dependencies: git-core x86_64 2.44.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20.8 MiB less x86_64 643-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 368.6 KiB libcbor x86_64 0.11.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 73.9 KiB libedit x86_64 3.1-50.20230828cvs.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 243.9 KiB libfido2 x86_64 1.14.0-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 237.8 KiB libyaml x86_64 0.2.5-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 130.4 KiB openssh x86_64 9.6p1-1.fc41.7 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB openssh-clients x86_64 9.6p1-1.fc41.7 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB python3-attrs noarch 23.2.0-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 379.6 KiB python3-boto noarch 2.49.0-21.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.8 MiB python3-fastjsonschema noarch 2.19.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 189.2 KiB python3-gitdb noarch 4.0.10-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 503.2 KiB python3-jsonschema-specifications noarch 2023.11.2-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 45.8 KiB python3-jupyter-core noarch 5.7.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 196.6 KiB python3-plac noarch 1.4.3-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 227.1 KiB python3-platformdirs noarch 3.11.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 162.4 KiB python3-referencing noarch 0.31.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 313.3 KiB python3-rpds-py x86_64 0.18.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 704.5 KiB python3-smmap noarch 5.0.0-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 198.2 KiB python3-traitlets noarch 5.14.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 964.4 KiB python3-zombie-imp noarch 0.0.2-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 58.0 KiB Transaction Summary: Installing: 42 packages Total size of inbound packages is 15 MiB. Need to download 15 MiB. After this operation 67 MiB will be used (install 67 MiB, remove 0 B). [ 1/42] python3-conda-inject-0:1.3.1-3. 100% | 3.2 KiB/s | 18.2 KiB | 00m06s [ 2/42] python3-dpath-0:2.1.6-1.fc40.no 100% | 6.1 KiB/s | 36.1 KiB | 00m06s [ 3/42] python3-pulp-0:2.8.0-4.fc41.noa 100% | 38.6 KiB/s | 230.4 KiB | 00m06s [ 4/42] python3-snakemake-interface-rep 100% | 612.3 KiB/s | 20.8 KiB | 00m00s [ 5/42] python3-toposort-0:1.10-10.fc40 100% | 478.6 KiB/s | 20.1 KiB | 00m00s [ 6/42] python3-yte-0:1.5.4-3.fc40.noar 100% | 755.7 KiB/s | 31.0 KiB | 00m00s [ 7/42] python3-connection_pool-0:0.0.3 100% | 397.9 KiB/s | 16.7 KiB | 00m00s [ 8/42] python3-datrie-0:0.8.2-25.fc40. 100% | 4.8 MiB/s | 158.5 KiB | 00m00s [ 9/42] python3-docutils-0:0.20.1-3.fc4 100% | 17.1 MiB/s | 996.2 KiB | 00m00s [10/42] python3-GitPython-0:3.1.40-4.fc 100% | 7.2 MiB/s | 361.5 KiB | 00m00s [11/42] python3-humanfriendly-0:10.0-10 100% | 3.9 MiB/s | 132.0 KiB | 00m00s [12/42] python3-immutables-0:0.20-3.fc4 100% | 1.8 MiB/s | 59.0 KiB | 00m00s [13/42] python3-nbformat-0:5.9.2-3.fc40 100% | 4.2 MiB/s | 120.8 KiB | 00m00s [14/42] python3-jsonschema-0:4.19.1-3.f 100% | 4.6 MiB/s | 186.4 KiB | 00m00s [15/42] python3-psutil-0:5.9.8-1.fc40.x 100% | 9.1 MiB/s | 261.9 KiB | 00m00s [16/42] python3-pygments-0:2.17.2-3.fc4 100% | 43.6 MiB/s | 2.3 MiB | 00m00s [17/42] python3-pyyaml-0:6.0.1-14.fc40. 100% | 6.8 MiB/s | 221.2 KiB | 00m00s [18/42] python3-stopit-0:1.1.2-10.fc40. 100% | 787.9 KiB/s | 25.2 KiB | 00m00s [19/42] python3-slackclient-0:3.27.1-1. 100% | 9.7 MiB/s | 486.0 KiB | 00m00s [20/42] python3-tabulate-0:0.9.0-6.fc40 100% | 1.7 MiB/s | 69.9 KiB | 00m00s [21/42] python3-plac-0:1.4.3-1.fc41.noa 100% | 2.2 MiB/s | 61.7 KiB | 00m00s [22/42] libyaml-0:0.2.5-14.fc40.x86_64 100% | 1.3 MiB/s | 59.2 KiB | 00m00s [23/42] python3-boto-0:2.49.0-21.fc40.n 100% | 21.5 MiB/s | 1.6 MiB | 00m00s [24/42] python3-fastjsonschema-0:2.19.1 100% | 2.1 MiB/s | 56.7 KiB | 00m00s [25/42] python3-jupyter-core-0:5.7.2-1. 100% | 1.6 MiB/s | 70.6 KiB | 00m00s [26/42] python3-traitlets-0:5.14.1-1.fc 100% | 4.4 MiB/s | 196.0 KiB | 00m00s [27/42] python3-attrs-0:23.2.0-6.fc41.n 100% | 4.5 MiB/s | 111.0 KiB | 00m00s [28/42] python3-platformdirs-0:3.11.0-3 100% | 1.0 MiB/s | 39.5 KiB | 00m00s [29/42] python3-jsonschema-specificatio 100% | 657.2 KiB/s | 21.0 KiB | 00m00s [30/42] python3-referencing-0:0.31.1-3. 100% | 3.3 MiB/s | 73.7 KiB | 00m00s [31/42] python3-zombie-imp-0:0.0.2-5.fc 100% | 1.1 MiB/s | 29.1 KiB | 00m00s [32/42] python3-rpds-py-0:0.18.0-1.fc41 100% | 9.0 MiB/s | 294.7 KiB | 00m00s [33/42] python3-gitdb-0:4.0.10-5.fc40.n 100% | 3.3 MiB/s | 128.4 KiB | 00m00s [34/42] git-core-0:2.44.0-1.fc41.x86_64 100% | 55.4 MiB/s | 4.5 MiB | 00m00s [35/42] less-0:643-4.fc40.x86_64 100% | 3.0 MiB/s | 174.1 KiB | 00m00s [36/42] openssh-clients-0:9.6p1-1.fc41. 100% | 18.1 MiB/s | 742.4 KiB | 00m00s [37/42] openssh-0:9.6p1-1.fc41.7.x86_64 100% | 11.4 MiB/s | 421.0 KiB | 00m00s [38/42] python3-smmap-0:5.0.0-8.fc40.no 100% | 1.9 MiB/s | 55.2 KiB | 00m00s [39/42] libedit-0:3.1-50.20230828cvs.fc 100% | 3.5 MiB/s | 105.0 KiB | 00m00s [40/42] libfido2-0:1.14.0-4.fc40.x86_64 100% | 4.3 MiB/s | 97.6 KiB | 00m00s [41/42] libcbor-0:0.11.0-1.fc40.x86_64 100% | 791.8 KiB/s | 33.3 KiB | 00m00s [42/42] python3-smart_open-0:7.0.4-1.fc 100% | 18.7 KiB/s | 115.0 KiB | 00m06s -------------------------------------------------------------------------------- [42/42] Total 100% | 1.2 MiB/s | 14.6 MiB | 00m12s Running transaction [ 1/44] Verify package files 100% | 823.0 B/s | 42.0 B | 00m00s [ 2/44] Prepare transaction 100% | 600.0 B/s | 42.0 B | 00m00s [ 3/44] Installing python3-rpds-py-0:0. 100% | 138.4 MiB/s | 708.4 KiB | 00m00s [ 4/44] Installing python3-attrs-0:23.2 100% | 77.0 MiB/s | 394.1 KiB | 00m00s [ 5/44] Installing python3-referencing- 100% | 105.1 MiB/s | 322.9 KiB | 00m00s [ 6/44] Installing python3-traitlets-0: 100% | 136.9 MiB/s | 981.5 KiB | 00m00s [ 7/44] Installing python3-jsonschema-s 100% | 13.5 MiB/s | 55.1 KiB | 00m00s [ 8/44] Installing python3-jsonschema-0 100% | 121.6 MiB/s | 871.7 KiB | 00m00s [ 9/44] Installing libcbor-0:0.11.0-1.f 100% | 73.5 MiB/s | 75.3 KiB | 00m00s [10/44] Installing libfido2-0:1.14.0-4. 100% | 116.8 MiB/s | 239.3 KiB | 00m00s [11/44] Installing libedit-0:3.1-50.202 100% | 119.9 MiB/s | 245.5 KiB | 00m00s [12/44] Installing python3-smmap-0:5.0. 100% | 67.0 MiB/s | 205.9 KiB | 00m00s [13/44] Installing python3-gitdb-0:4.0. 100% | 84.6 MiB/s | 519.7 KiB | 00m00s [14/44] Installing openssh-0:9.6p1-1.fc 100% | 260.0 MiB/s | 1.8 MiB | 00m00s [15/44] Installing openssh-clients-0:9. 100% | 124.2 MiB/s | 2.6 MiB | 00m00s >>> Running post-install scriptlet: openssh-clients-0:9.6p1-1.fc41.7.x86_64 >>> Stop post-install scriptlet: openssh-clients-0:9.6p1-1.fc41.7.x86_64 [16/44] Installing less-0:643-4.fc40.x8 100% | 90.8 MiB/s | 372.0 KiB | 00m00s [17/44] Installing git-core-0:2.44.0-1. 100% | 301.5 MiB/s | 20.8 MiB | 00m00s [18/44] Installing python3-zombie-imp-0 100% | 20.2 MiB/s | 62.0 KiB | 00m00s [19/44] Installing python3-boto-0:2.49. 100% | 130.8 MiB/s | 10.1 MiB | 00m00s [20/44] Installing python3-platformdirs 100% | 55.1 MiB/s | 169.2 KiB | 00m00s [21/44] Installing python3-jupyter-core 100% | 66.9 MiB/s | 205.4 KiB | 00m00s [22/44] Installing python3-fastjsonsche 100% | 64.2 MiB/s | 197.2 KiB | 00m00s [23/44] Installing libyaml-0:0.2.5-14.f 100% | 128.7 MiB/s | 131.8 KiB | 00m00s [24/44] Installing python3-pyyaml-0:6.0 100% | 130.2 MiB/s | 800.2 KiB | 00m00s [25/44] Installing python3-plac-0:1.4.3 100% | 112.6 MiB/s | 230.6 KiB | 00m00s [26/44] Installing python3-dpath-0:2.1. 100% | 48.0 MiB/s | 98.4 KiB | 00m00s [27/44] Installing python3-yte-0:1.5.4- 100% | 32.1 MiB/s | 65.8 KiB | 00m00s [28/44] Installing python3-conda-inject 100% | 12.5 MiB/s | 25.7 KiB | 00m00s [29/44] Installing python3-nbformat-0:5 100% | 63.4 MiB/s | 584.5 KiB | 00m00s [30/44] Installing python3-smart_open-0 100% | 98.4 MiB/s | 503.6 KiB | 00m00s [31/44] Installing python3-GitPython-0: 100% | 157.7 MiB/s | 1.7 MiB | 00m00s [32/44] Installing python3-tabulate-0:0 100% | 169.5 MiB/s | 347.1 KiB | 00m00s [33/44] Installing python3-stopit-0:1.1 100% | 33.9 MiB/s | 69.4 KiB | 00m00s [34/44] Installing python3-slackclient- 100% | 84.9 MiB/s | 3.0 MiB | 00m00s [35/44] Installing python3-pygments-0:2 100% | 170.0 MiB/s | 10.5 MiB | 00m00s [36/44] Installing python3-psutil-0:5.9 100% | 240.2 MiB/s | 1.4 MiB | 00m00s [37/44] Installing python3-immutables-0 100% | 62.0 MiB/s | 190.4 KiB | 00m00s [38/44] Installing python3-humanfriendl 100% | 91.3 MiB/s | 561.2 KiB | 00m00s [39/44] Installing python3-docutils-0:0 100% | 139.6 MiB/s | 4.9 MiB | 00m00s [40/44] Installing python3-datrie-0:0.8 100% | 218.2 MiB/s | 446.9 KiB | 00m00s [41/44] Installing python3-connection_p 100% | 23.1 MiB/s | 23.7 KiB | 00m00s [42/44] Installing python3-toposort-0:1 100% | 30.1 MiB/s | 30.8 KiB | 00m00s [43/44] Installing python3-snakemake-in 100% | 18.4 MiB/s | 37.8 KiB | 00m00s [44/44] Installing python3-pulp-0:2.8.0 100% | 20.5 MiB/s | 1.1 MiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-12.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-12.fc41.x86_64 Warning: skipped PGP checks for 42 package(s). Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1713571200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Cf3S6v + umask 022 + cd /builddir/build/BUILD + cd snakemake-8.10.8 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.10.8/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.10.8-1.fc41.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 69.2.0) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.10.8/snakemake-8.10.8.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling immutables from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: immutables (installed: immutables 0.20) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: connection-pool >=0.0.3 (installed: connection-pool 0.0.3) Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: datrie (installed: datrie 0.8.2) Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: gitpython (installed: gitpython 3.1.40) Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: humanfriendly (installed: humanfriendly 10.0) Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.3) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jsonschema (installed: jsonschema 4.19.1) Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: nbformat (installed: nbformat 5.9.2) Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 24.0) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: psutil (installed: psutil 5.9.8) Handling pulp <2.9,>=2.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pulp <2.9,>=2.3.1 (installed: pulp 2.8.0) Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests <3.0,>=2.8.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests <3.0,>=2.8.1 (installed: requests 2.31.0) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open <8.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: smart-open <8.0,>=3.0 (installed: smart-open 7.0.4) Handling snakemake-interface-executor-plugins <10.0,>=9.1.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-executor-plugins <10.0,>=9.1.0 (installed: snakemake-interface-executor-plugins 9.1.1) Handling snakemake-interface-common <2.0,>=1.17.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-common <2.0,>=1.17.0 (installed: snakemake-interface-common 1.17.2) Handling snakemake-interface-storage-plugins <4.0,>=3.1.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-storage-plugins <4.0,>=3.1.0 (installed: snakemake-interface-storage-plugins 3.2.2) Handling snakemake-interface-report-plugins <2.0.0,>=1.0.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-report-plugins <2.0.0,>=1.0.0 (installed: snakemake-interface-report-plugins 1.0.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: tabulate (installed: tabulate 0.9.0) Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort <2.0,>=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: toposort <2.0,>=1.10 (installed: toposort 1.10) Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: yte <2.0,>=1.5.1 (installed: yte 1.5.4) Handling dpath <3.0.0,>=2.1.6 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: dpath <3.0.0,>=2.1.6 (installed: dpath 2.1.6) Handling conda-inject <2.0,>=1.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: conda-inject <2.0,>=1.3.1 (installed: conda-inject 1.3.1) Handling slack-sdk ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: slack-sdk ; extra == 'messaging' (installed: slack-sdk 3.27.1) Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-8.10.8-1.fc41.x86_64-pyproject-buildrequires + rm -rfv snakemake-8.10.8.dist-info/ removed 'snakemake-8.10.8.dist-info/entry_points.txt' removed 'snakemake-8.10.8.dist-info/top_level.txt' removed 'snakemake-8.10.8.dist-info/METADATA' removed 'snakemake-8.10.8.dist-info/LICENSE.md' removed directory 'snakemake-8.10.8.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-8.10.8-1.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 61.5 KiB/s | 20.5 KiB | 00m00s Copr repository 100% | 51.2 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 609.0 B/s | 4.1 KiB | 00m07s updates 100% | 40.3 KiB/s | 17.3 KiB | 00m00s Repositories loaded. Package "help2man-1.49.3-5.fc40.noarch" is already installed. Package "pyproject-rpm-macros-1.12.0-1.fc40.noarch" is already installed. Package "python3-devel-3.12.3-2.fc41.x86_64" is already installed. Package "python3-appdirs-1.4.4-13.fc40.noarch" is already installed. Package "python3-boto3-1.34.87-1.fc41.noarch" is already installed. Package "python3-configargparse-1.7-3.fc40.noarch" is already installed. Package "python3-connection_pool-0.0.3-11.fc40.noarch" is already installed. Package "python3-datrie-0.8.2-25.fc40.x86_64" is already installed. Package "python3-docutils-0.20.1-3.fc40.noarch" is already installed. Package "python3-flask-1:3.0.3-1.fc41.noarch" is already installed. Package "python3-GitPython-3.1.40-4.fc40.noarch" is already installed. Package "python3-google-cloud-storage-2.14.0-4.fc40.noarch" is already installed. Nothing to do. Package "python3-humanfriendly-10.0-10.fc40.noarch" is already installed. Package "python3-immutables-0.20-3.fc40.x86_64" is already installed. Package "python3-jsonschema-4.19.1-3.fc40.noarch" is already installed. Package "python3-nbformat-5.9.2-3.fc40.noarch" is already installed. Package "python3-packaging-24.0-1.fc41.noarch" is already installed. Package "python3-pandas-2.2.1-2.fc41.x86_64" is already installed. Package "python3-pip-24.0-2.fc41.noarch" is already installed. Package "python3-psutil-5.9.8-1.fc40.x86_64" is already installed. Package "python3-pygments-2.17.2-3.fc40.noarch" is already installed. Package "python3-pytest-7.4.3-5.fc41.noarch" is already installed. Package "python3-pyyaml-6.0.1-14.fc40.x86_64" is already installed. Package "python3-reretry-0.11.8-8.fc40.noarch" is already installed. Package "python3-setuptools-69.2.0-1.fc41.noarch" is already installed. Package "python3-slackclient-3.27.1-1.fc41.noarch" is already installed. Package "python3-snakemake-executor-plugin-cluster-generic-1.0.9-1.fc41.noarch" is already installed. Package "python3-snakemake-storage-plugin-s3-0.2.11-1.fc41.noarch" is already installed. Package "python3-stopit-1.1.2-10.fc40.noarch" is already installed. Package "python3-tabulate-0.9.0-6.fc40.noarch" is already installed. Package "python3-throttler-1.2.2-9.fc40.noarch" is already installed. Package "python3-wheel-1:0.43.0-1.fc41.noarch" is already installed. Package "python3-wrapt-1.16.0-3.fc40.x86_64" is already installed. Package "vim-filesystem-2:9.1.309-1.fc41.noarch" is already installed. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1713571200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.aQkB8c + umask 022 + cd /builddir/build/BUILD + cd snakemake-8.10.8 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.10.8/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.10.8-1.fc41.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 69.2.0) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.10.8/snakemake-8.10.8.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling immutables from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: immutables (installed: immutables 0.20) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: connection-pool >=0.0.3 (installed: connection-pool 0.0.3) Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: datrie (installed: datrie 0.8.2) Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: gitpython (installed: gitpython 3.1.40) Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: humanfriendly (installed: humanfriendly 10.0) Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.3) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jsonschema (installed: jsonschema 4.19.1) Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: nbformat (installed: nbformat 5.9.2) Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 24.0) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: psutil (installed: psutil 5.9.8) Handling pulp <2.9,>=2.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pulp <2.9,>=2.3.1 (installed: pulp 2.8.0) Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests <3.0,>=2.8.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests <3.0,>=2.8.1 (installed: requests 2.31.0) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open <8.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: smart-open <8.0,>=3.0 (installed: smart-open 7.0.4) Handling snakemake-interface-executor-plugins <10.0,>=9.1.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-executor-plugins <10.0,>=9.1.0 (installed: snakemake-interface-executor-plugins 9.1.1) Handling snakemake-interface-common <2.0,>=1.17.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-common <2.0,>=1.17.0 (installed: snakemake-interface-common 1.17.2) Handling snakemake-interface-storage-plugins <4.0,>=3.1.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-storage-plugins <4.0,>=3.1.0 (installed: snakemake-interface-storage-plugins 3.2.2) Handling snakemake-interface-report-plugins <2.0.0,>=1.0.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-report-plugins <2.0.0,>=1.0.0 (installed: snakemake-interface-report-plugins 1.0.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: tabulate (installed: tabulate 0.9.0) Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort <2.0,>=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: toposort <2.0,>=1.10 (installed: toposort 1.10) Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: yte <2.0,>=1.5.1 (installed: yte 1.5.4) Handling dpath <3.0.0,>=2.1.6 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: dpath <3.0.0,>=2.1.6 (installed: dpath 2.1.6) Handling conda-inject <2.0,>=1.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: conda-inject <2.0,>=1.3.1 (installed: conda-inject 1.3.1) Handling slack-sdk ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: slack-sdk ; extra == 'messaging' (installed: slack-sdk 3.27.1) Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-8.10.8-1.fc41.x86_64-pyproject-buildrequires + rm -rfv snakemake-8.10.8.dist-info/ removed 'snakemake-8.10.8.dist-info/entry_points.txt' removed 'snakemake-8.10.8.dist-info/top_level.txt' removed 'snakemake-8.10.8.dist-info/METADATA' removed 'snakemake-8.10.8.dist-info/LICENSE.md' removed directory 'snakemake-8.10.8.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ULdJu2 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-8.10.8 + mkdir -p /builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/snakemake-8.10.8/pyproject-wheeldir Processing /builddir/build/BUILD/snakemake-8.10.8 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir/pip-modern-metadata-a9l956po/snakemake.egg-info writing /builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir/pip-modern-metadata-a9l956po/snakemake.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir/pip-modern-metadata-a9l956po/snakemake.egg-info/dependency_links.txt writing entry points to /builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir/pip-modern-metadata-a9l956po/snakemake.egg-info/entry_points.txt writing requirements to /builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir/pip-modern-metadata-a9l956po/snakemake.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir/pip-modern-metadata-a9l956po/snakemake.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir/pip-modern-metadata-a9l956po/snakemake.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir/pip-modern-metadata-a9l956po/snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file '/builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir/pip-modern-metadata-a9l956po/snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir/pip-modern-metadata-a9l956po/snakemake-8.10.8.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: snakemake Building wheel for snakemake (pyproject.toml): started Running command Building wheel for snakemake (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/snakemake copying snakemake/__init__.py -> build/lib/snakemake copying snakemake/__main__.py -> build/lib/snakemake copying snakemake/_version.py -> build/lib/snakemake copying snakemake/api.py -> build/lib/snakemake copying snakemake/benchmark.py -> build/lib/snakemake copying snakemake/checkpoints.py -> build/lib/snakemake copying snakemake/cli.py -> build/lib/snakemake copying snakemake/cwl.py -> build/lib/snakemake copying snakemake/dag.py -> build/lib/snakemake copying snakemake/decorators.py -> build/lib/snakemake copying snakemake/exceptions.py -> build/lib/snakemake copying snakemake/gui.py -> build/lib/snakemake copying snakemake/io.py -> build/lib/snakemake copying snakemake/ioflags.py -> build/lib/snakemake copying snakemake/ioutils.py -> build/lib/snakemake copying snakemake/jobs.py -> build/lib/snakemake copying snakemake/logging.py -> build/lib/snakemake copying snakemake/modules.py -> build/lib/snakemake copying snakemake/notebook.py -> build/lib/snakemake copying snakemake/output_index.py -> build/lib/snakemake copying snakemake/parser.py -> build/lib/snakemake copying snakemake/path_modifier.py -> build/lib/snakemake copying snakemake/persistence.py -> build/lib/snakemake copying snakemake/profiles.py -> build/lib/snakemake copying snakemake/resources.py -> build/lib/snakemake copying snakemake/ruleinfo.py -> build/lib/snakemake copying snakemake/rules.py -> build/lib/snakemake copying snakemake/scheduler.py -> build/lib/snakemake copying snakemake/settings.py -> build/lib/snakemake copying snakemake/shell.py -> build/lib/snakemake copying snakemake/sourcecache.py -> build/lib/snakemake copying snakemake/spawn_jobs.py -> build/lib/snakemake copying snakemake/storage.py -> build/lib/snakemake copying snakemake/target_jobs.py -> build/lib/snakemake copying snakemake/utils.py -> build/lib/snakemake copying snakemake/workflow.py -> build/lib/snakemake copying snakemake/wrapper.py -> build/lib/snakemake creating build/lib/snakemake/caching copying snakemake/caching/__init__.py -> build/lib/snakemake/caching copying snakemake/caching/hash.py -> build/lib/snakemake/caching copying snakemake/caching/local.py -> build/lib/snakemake/caching copying snakemake/caching/storage.py -> build/lib/snakemake/caching creating build/lib/snakemake/common copying snakemake/common/__init__.py -> build/lib/snakemake/common copying snakemake/common/argparse.py -> build/lib/snakemake/common copying snakemake/common/configfile.py -> build/lib/snakemake/common copying snakemake/common/git.py -> build/lib/snakemake/common copying snakemake/common/tbdstring.py -> build/lib/snakemake/common copying snakemake/common/workdir_handler.py -> build/lib/snakemake/common creating build/lib/snakemake/deployment copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment creating build/lib/snakemake/executors copying snakemake/executors/__init__.py -> build/lib/snakemake/executors copying snakemake/executors/dryrun.py -> build/lib/snakemake/executors copying snakemake/executors/local.py -> build/lib/snakemake/executors copying snakemake/executors/touch.py -> build/lib/snakemake/executors copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors creating build/lib/snakemake/linting copying snakemake/linting/__init__.py -> build/lib/snakemake/linting copying snakemake/linting/links.py -> build/lib/snakemake/linting copying snakemake/linting/rules.py -> build/lib/snakemake/linting copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting creating build/lib/snakemake/remote copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote copying snakemake/remote/EGA.py -> build/lib/snakemake/remote copying snakemake/remote/FTP.py -> build/lib/snakemake/remote copying snakemake/remote/GS.py -> build/lib/snakemake/remote copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote copying snakemake/remote/S3.py -> build/lib/snakemake/remote copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote copying snakemake/remote/__init__.py -> build/lib/snakemake/remote copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote copying snakemake/remote/gfal.py -> build/lib/snakemake/remote copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote copying snakemake/remote/webdav.py -> build/lib/snakemake/remote copying snakemake/remote/zenodo.py -> build/lib/snakemake/remote creating build/lib/snakemake/report copying snakemake/report/__init__.py -> build/lib/snakemake/report copying snakemake/report/common.py -> build/lib/snakemake/report copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report creating build/lib/snakemake/script copying snakemake/script/__init__.py -> build/lib/snakemake/script creating build/lib/snakemake/template_rendering copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering creating build/lib/snakemake/unit_tests copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests creating build/lib/snakemake/common/tests copying snakemake/common/tests/__init__.py -> build/lib/snakemake/common/tests creating build/lib/snakemake/common/tests/testcases copying snakemake/common/tests/testcases/__init__.py -> build/lib/snakemake/common/tests/testcases creating build/lib/snakemake/common/tests/testcases/groups copying snakemake/common/tests/testcases/groups/__init__.py -> build/lib/snakemake/common/tests/testcases/groups creating build/lib/snakemake/common/tests/testcases/simple copying snakemake/common/tests/testcases/simple/__init__.py -> build/lib/snakemake/common/tests/testcases/simple creating build/lib/snakemake/report/html_reporter copying snakemake/report/html_reporter/__init__.py -> build/lib/snakemake/report/html_reporter copying snakemake/report/html_reporter/common.py -> build/lib/snakemake/report/html_reporter creating build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/__init__.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/categories.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/common.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/configfiles.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/packages.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/results.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/rulegraph.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/rules.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/runtimes.py -> build/lib/snakemake/report/html_reporter/data copying snakemake/report/html_reporter/data/timeline.py -> build/lib/snakemake/report/html_reporter/data creating build/lib/snakemake/report/html_reporter/template copying snakemake/report/html_reporter/template/__init__.py -> build/lib/snakemake/report/html_reporter/template creating build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/__init__.py -> build/lib/snakemake/report/html_reporter/template/components creating build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates copying snakemake/report.css -> build/lib/snakemake copying snakemake/gui.html -> build/lib/snakemake copying snakemake/executors/jobscript.sh -> build/lib/snakemake/executors copying snakemake/common/tests/testcases/groups/Snakefile -> build/lib/snakemake/common/tests/testcases/groups copying snakemake/common/tests/testcases/simple/Snakefile -> build/lib/snakemake/common/tests/testcases/simple copying snakemake/report/html_reporter/template/style.css -> build/lib/snakemake/report/html_reporter/template copying snakemake/report/html_reporter/template/index.html.jinja2 -> build/lib/snakemake/report/html_reporter/template copying snakemake/report/html_reporter/template/logo.svg -> build/lib/snakemake/report/html_reporter/template copying snakemake/report/html_reporter/template/components/abstract_menu.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/abstract_results.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/app.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/breadcrumbs.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/button.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/category.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/common.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/content.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/icon.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/list_heading.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/list_item.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/menu.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/navbar.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/report_info.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/result_info.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/result_view_button.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/rule_graph.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/rule_info.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/search_results.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/stats.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/report/html_reporter/template/components/subcategory.js -> build/lib/snakemake/report/html_reporter/template/components copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates UPDATING build/lib/snakemake/_version.py set build/lib/snakemake/_version.py to '8.10.8' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/__main__.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/api.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/benchmark.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/cli.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/cwl.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/dag.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/decorators.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/exceptions.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/gui.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/io.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/ioflags.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/ioutils.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/jobs.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/logging.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/modules.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/notebook.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/output_index.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/parser.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/persistence.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/profiles.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/resources.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/rules.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/scheduler.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/settings.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/shell.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/spawn_jobs.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/storage.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/target_jobs.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/utils.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/workflow.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/wrapper.py -> build/bdist.linux-x86_64/wheel/snakemake creating build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/local.py -> build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/storage.py -> build/bdist.linux-x86_64/wheel/snakemake/caching creating build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/argparse.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/configfile.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/git.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/workdir_handler.py -> build/bdist.linux-x86_64/wheel/snakemake/common creating build/bdist.linux-x86_64/wheel/snakemake/common/tests copying build/lib/snakemake/common/tests/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common/tests creating build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases copying build/lib/snakemake/common/tests/testcases/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases creating build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/groups copying build/lib/snakemake/common/tests/testcases/groups/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/groups copying build/lib/snakemake/common/tests/testcases/groups/Snakefile -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/groups creating build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/simple copying build/lib/snakemake/common/tests/testcases/simple/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/simple copying build/lib/snakemake/common/tests/testcases/simple/Snakefile -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/simple creating build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment creating build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/dryrun.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/local.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/touch.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-x86_64/wheel/snakemake/executors creating build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/links.py -> build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-x86_64/wheel/snakemake/linting creating build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-x86_64/wheel/snakemake/remote creating build/bdist.linux-x86_64/wheel/snakemake/report copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report copying build/lib/snakemake/report/common.py -> build/bdist.linux-x86_64/wheel/snakemake/report copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-x86_64/wheel/snakemake/report creating build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter copying build/lib/snakemake/report/html_reporter/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter copying build/lib/snakemake/report/html_reporter/common.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter creating build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/categories.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/common.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/configfiles.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/packages.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/results.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/rulegraph.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/rules.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/runtimes.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/timeline.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/data creating build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template copying build/lib/snakemake/report/html_reporter/template/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template creating build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/abstract_menu.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/abstract_results.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/app.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/breadcrumbs.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/button.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/category.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/common.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/content.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/icon.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/list_heading.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/list_item.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/menu.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/navbar.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/report_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/result_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/result_view_button.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/rule_graph.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/rule_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/search_results.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/stats.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/subcategory.js -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/style.css -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template copying build/lib/snakemake/report/html_reporter/template/index.html.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template copying build/lib/snakemake/report/html_reporter/template/logo.svg -> build/bdist.linux-x86_64/wheel/snakemake/report/html_reporter/template creating build/bdist.linux-x86_64/wheel/snakemake/script copying build/lib/snakemake/script/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/script creating build/bdist.linux-x86_64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests copying build/lib/snakemake/unit_tests/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/report.css -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/gui.html -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/_version.py -> build/bdist.linux-x86_64/wheel/snakemake running install_egg_info running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Copying snakemake.egg-info to build/bdist.linux-x86_64/wheel/snakemake-8.10.8-py3.12.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/snakemake-8.10.8.dist-info/WHEEL creating '/builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir/pip-wheel-qsubpyb2/.tmp-al2huhr3/snakemake-8.10.8-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'snakemake/__init__.py' adding 'snakemake/__main__.py' adding 'snakemake/_version.py' adding 'snakemake/api.py' adding 'snakemake/benchmark.py' adding 'snakemake/checkpoints.py' adding 'snakemake/cli.py' adding 'snakemake/cwl.py' adding 'snakemake/dag.py' adding 'snakemake/decorators.py' adding 'snakemake/exceptions.py' adding 'snakemake/gui.html' adding 'snakemake/gui.py' adding 'snakemake/io.py' adding 'snakemake/ioflags.py' adding 'snakemake/ioutils.py' adding 'snakemake/jobs.py' adding 'snakemake/logging.py' adding 'snakemake/modules.py' adding 'snakemake/notebook.py' adding 'snakemake/output_index.py' adding 'snakemake/parser.py' adding 'snakemake/path_modifier.py' adding 'snakemake/persistence.py' adding 'snakemake/profiles.py' adding 'snakemake/report.css' adding 'snakemake/resources.py' adding 'snakemake/ruleinfo.py' adding 'snakemake/rules.py' adding 'snakemake/scheduler.py' adding 'snakemake/settings.py' adding 'snakemake/shell.py' adding 'snakemake/sourcecache.py' adding 'snakemake/spawn_jobs.py' adding 'snakemake/storage.py' adding 'snakemake/target_jobs.py' adding 'snakemake/utils.py' adding 'snakemake/workflow.py' adding 'snakemake/wrapper.py' adding 'snakemake/caching/__init__.py' adding 'snakemake/caching/hash.py' adding 'snakemake/caching/local.py' adding 'snakemake/caching/storage.py' adding 'snakemake/common/__init__.py' adding 'snakemake/common/argparse.py' adding 'snakemake/common/configfile.py' adding 'snakemake/common/git.py' adding 'snakemake/common/tbdstring.py' adding 'snakemake/common/workdir_handler.py' adding 'snakemake/common/tests/__init__.py' adding 'snakemake/common/tests/testcases/__init__.py' adding 'snakemake/common/tests/testcases/groups/Snakefile' adding 'snakemake/common/tests/testcases/groups/__init__.py' adding 'snakemake/common/tests/testcases/simple/Snakefile' adding 'snakemake/common/tests/testcases/simple/__init__.py' adding 'snakemake/deployment/__init__.py' adding 'snakemake/deployment/conda.py' adding 'snakemake/deployment/containerize.py' adding 'snakemake/deployment/env_modules.py' adding 'snakemake/deployment/singularity.py' adding 'snakemake/executors/__init__.py' adding 'snakemake/executors/dryrun.py' adding 'snakemake/executors/google_lifesciences_helper.py' adding 'snakemake/executors/jobscript.sh' adding 'snakemake/executors/local.py' adding 'snakemake/executors/touch.py' adding 'snakemake/linting/__init__.py' adding 'snakemake/linting/links.py' adding 'snakemake/linting/rules.py' adding 'snakemake/linting/snakefiles.py' adding 'snakemake/remote/AzBlob.py' adding 'snakemake/remote/EGA.py' adding 'snakemake/remote/FTP.py' adding 'snakemake/remote/GS.py' adding 'snakemake/remote/HTTP.py' adding 'snakemake/remote/NCBI.py' adding 'snakemake/remote/S3.py' adding 'snakemake/remote/S3Mocked.py' adding 'snakemake/remote/SFTP.py' adding 'snakemake/remote/XRootD.py' adding 'snakemake/remote/__init__.py' adding 'snakemake/remote/dropbox.py' adding 'snakemake/remote/gfal.py' adding 'snakemake/remote/gridftp.py' adding 'snakemake/remote/iRODS.py' adding 'snakemake/remote/webdav.py' adding 'snakemake/remote/zenodo.py' adding 'snakemake/report/__init__.py' adding 'snakemake/report/common.py' adding 'snakemake/report/rulegraph_spec.py' adding 'snakemake/report/html_reporter/__init__.py' adding 'snakemake/report/html_reporter/common.py' adding 'snakemake/report/html_reporter/data/__init__.py' adding 'snakemake/report/html_reporter/data/categories.py' adding 'snakemake/report/html_reporter/data/common.py' adding 'snakemake/report/html_reporter/data/configfiles.py' adding 'snakemake/report/html_reporter/data/packages.py' adding 'snakemake/report/html_reporter/data/results.py' adding 'snakemake/report/html_reporter/data/rulegraph.py' adding 'snakemake/report/html_reporter/data/rules.py' adding 'snakemake/report/html_reporter/data/runtimes.py' adding 'snakemake/report/html_reporter/data/timeline.py' adding 'snakemake/report/html_reporter/template/__init__.py' adding 'snakemake/report/html_reporter/template/index.html.jinja2' adding 'snakemake/report/html_reporter/template/logo.svg' adding 'snakemake/report/html_reporter/template/style.css' adding 'snakemake/report/html_reporter/template/components/__init__.py' adding 'snakemake/report/html_reporter/template/components/abstract_menu.js' adding 'snakemake/report/html_reporter/template/components/abstract_results.js' adding 'snakemake/report/html_reporter/template/components/app.js' adding 'snakemake/report/html_reporter/template/components/breadcrumbs.js' adding 'snakemake/report/html_reporter/template/components/button.js' adding 'snakemake/report/html_reporter/template/components/category.js' adding 'snakemake/report/html_reporter/template/components/common.js' adding 'snakemake/report/html_reporter/template/components/content.js' adding 'snakemake/report/html_reporter/template/components/icon.js' adding 'snakemake/report/html_reporter/template/components/list_heading.js' adding 'snakemake/report/html_reporter/template/components/list_item.js' adding 'snakemake/report/html_reporter/template/components/menu.js' adding 'snakemake/report/html_reporter/template/components/navbar.js' adding 'snakemake/report/html_reporter/template/components/report_info.js' adding 'snakemake/report/html_reporter/template/components/result_info.js' adding 'snakemake/report/html_reporter/template/components/result_view_button.js' adding 'snakemake/report/html_reporter/template/components/rule_graph.js' adding 'snakemake/report/html_reporter/template/components/rule_info.js' adding 'snakemake/report/html_reporter/template/components/search_results.js' adding 'snakemake/report/html_reporter/template/components/stats.js' adding 'snakemake/report/html_reporter/template/components/subcategory.js' adding 'snakemake/script/__init__.py' adding 'snakemake/template_rendering/__init__.py' adding 'snakemake/template_rendering/jinja2.py' adding 'snakemake/template_rendering/yte.py' adding 'snakemake/unit_tests/__init__.py' adding 'snakemake/unit_tests/templates/__init__.py' adding 'snakemake/unit_tests/templates/common.py.jinja2' adding 'snakemake/unit_tests/templates/ruletest.py.jinja2' adding 'snakemake-8.10.8.dist-info/LICENSE.md' adding 'snakemake-8.10.8.dist-info/METADATA' adding 'snakemake-8.10.8.dist-info/WHEEL' adding 'snakemake-8.10.8.dist-info/entry_points.txt' adding 'snakemake-8.10.8.dist-info/top_level.txt' adding 'snakemake-8.10.8.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for snakemake (pyproject.toml): finished with status 'done' Created wheel for snakemake: filename=snakemake-8.10.8-py3-none-any.whl size=301017 sha256=00c5e6aca5586dabc6ca681ef4b9db23504a67dadd0c29072b1896ebb862d535 Stored in directory: /builddir/.cache/pip/wheels/bc/d3/6f/9ba4db9903ac113e385c7788eebeb71f54d1e8e3699b15100f Successfully built snakemake + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.HX4KKx + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64 ++ dirname /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-8.10.8 ++ xargs basename --multiple ++ ls /builddir/build/BUILD/snakemake-8.10.8/pyproject-wheeldir/snakemake-8.10.8-py3-none-any.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=snakemake==8.10.8 + '[' -z snakemake==8.10.8 ']' + TMPDIR=/builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/snakemake-8.10.8/pyproject-wheeldir snakemake==8.10.8 Using pip 24.0 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/snakemake-8.10.8/pyproject-wheeldir Processing ./pyproject-wheeldir/snakemake-8.10.8-py3-none-any.whl Installing collected packages: snakemake Creating /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/bin changing mode of /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/bin/snakemake to 755 Successfully installed snakemake-8.10.8 + '[' -d /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/bin/snakemake /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/bin/snakemake: updating + rm -rfv /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/snakemake-8.10.8-1.fc41.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/lib/python3.12/site-packages ']' + site_dirs+=("/usr/lib/python3.12/site-packages") + '[' /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/lib/python3.12/site-packages ']' + '[' -d /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/lib64/python3.12/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.12/site-packages/snakemake-8.10.8.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/lib/python3.12/site-packages/snakemake-8.10.8.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64 --record /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/lib/python3.12/site-packages/snakemake-8.10.8.dist-info/RECORD --output /builddir/build/BUILD/snakemake-8.10.8-1.fc41.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/lib/python3.12/site-packages/snakemake-8.10.8.dist-info/RECORD removed '/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/lib/python3.12/site-packages/snakemake-8.10.8.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/lib/python3.12/site-packages/snakemake-8.10.8.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/lib/python3.12/site-packages/snakemake-8.10.8.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/snakemake-8.10.8-1.fc41.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=2 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/snakemake-8.10.8-1.fc41.x86_64-pyproject-files --output-modules /builddir/build/BUILD/snakemake-8.10.8-1.fc41.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/snakemake-8.10.8-1.fc41.x86_64-pyproject-record --prefix /usr -l snakemake + install -d /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/man/man1 + PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/bin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/lib/python3.12/site-packages + help2man --no-info '--name=Metapackage for snakemake: messaging extras' snakemake + install -t /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/nano -D -m 0644 -p misc/nano/syntax/snakemake.nanorc + install -d /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/vim/vimfiles + cp -vrp misc/vim/README.md misc/vim/ftdetect misc/vim/ftplugin misc/vim/syntax /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/vim/vimfiles 'misc/vim/README.md' -> '/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/vim/vimfiles/README.md' 'misc/vim/ftdetect' -> '/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/vim/vimfiles/ftdetect' 'misc/vim/ftdetect/snakemake.vim' -> '/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/vim/vimfiles/ftdetect/snakemake.vim' 'misc/vim/ftplugin' -> '/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/vim/vimfiles/ftplugin' 'misc/vim/ftplugin/snakemake' -> '/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/vim/vimfiles/ftplugin/snakemake' 'misc/vim/ftplugin/snakemake/folding.vim' -> '/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/vim/vimfiles/ftplugin/snakemake/folding.vim' 'misc/vim/ftplugin/snakemake/sections.vim' -> '/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/vim/vimfiles/ftplugin/snakemake/sections.vim' 'misc/vim/syntax' -> '/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/vim/vimfiles/syntax' 'misc/vim/syntax/snakemake.vim' -> '/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/vim/vimfiles/syntax/snakemake.vim' + find /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/vim/vimfiles -type f -name 'README.*' -print -delete /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/vim/vimfiles/README.md + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 8.10.8-1.fc41 --unique-debug-suffix -8.10.8-1.fc41.x86_64 --unique-debug-src-base snakemake-8.10.8-1.fc41.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/snakemake-8.10.8 find-debuginfo: starting Extracting debug info from 0 files Creating .debug symlinks for symlinks to ELF files find: ‘debug’: No such file or directory find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/lib/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.pG7Fe6 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-8.10.8 + '[' '!' -f /builddir/build/BUILD/snakemake-8.10.8-1.fc41.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/lib/python3.12/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/snakemake-8.10.8-1.fc41.x86_64-pyproject-modules -e '*.tests*' -e snakemake.executors.flux Check import: snakemake Check import: snakemake.api Check import: snakemake.benchmark Check import: snakemake.caching Check import: snakemake.caching.hash Check import: snakemake.caching.local Check import: snakemake.caching.storage Check import: snakemake.checkpoints Check import: snakemake.cli Check import: snakemake.common Check import: snakemake.common.argparse Check import: snakemake.common.configfile Check import: snakemake.common.git Check import: snakemake.common.tbdstring Check import: snakemake.common.workdir_handler Check import: snakemake.cwl Check import: snakemake.dag Check import: snakemake.decorators Check import: snakemake.deployment Check import: snakemake.deployment.conda Check import: snakemake.deployment.containerize Check import: snakemake.deployment.env_modules Check import: snakemake.deployment.singularity Check import: snakemake.exceptions Check import: snakemake.executors Check import: snakemake.executors.dryrun Check import: snakemake.executors.google_lifesciences_helper Check import: snakemake.executors.local Check import: snakemake.executors.touch Check import: snakemake.gui Check import: snakemake.io Check import: snakemake.ioflags Check import: snakemake.ioutils Check import: snakemake.jobs Check import: snakemake.linting Check import: snakemake.linting.links Check import: snakemake.linting.rules Check import: snakemake.linting.snakefiles Check import: snakemake.logging Check import: snakemake.modules Check import: snakemake.notebook Check import: snakemake.output_index Check import: snakemake.parser Check import: snakemake.path_modifier Check import: snakemake.persistence Check import: snakemake.profiles Check import: snakemake.remote Check import: snakemake.remote.AzBlob Check import: snakemake.remote.EGA Check import: snakemake.remote.FTP Check import: snakemake.remote.GS Check import: snakemake.remote.HTTP Check import: snakemake.remote.NCBI Check import: snakemake.remote.S3 Check import: snakemake.remote.S3Mocked Check import: snakemake.remote.SFTP Check import: snakemake.remote.XRootD Check import: snakemake.remote.dropbox Check import: snakemake.remote.gfal Check import: snakemake.remote.gridftp Check import: snakemake.remote.iRODS Check import: snakemake.remote.webdav Check import: snakemake.remote.zenodo Check import: snakemake.report Check import: snakemake.report.common Check import: snakemake.report.html_reporter Check import: snakemake.report.html_reporter.common Check import: snakemake.report.html_reporter.data Check import: snakemake.report.html_reporter.data.categories Check import: snakemake.report.html_reporter.data.common Check import: snakemake.report.html_reporter.data.configfiles Check import: snakemake.report.html_reporter.data.packages Check import: snakemake.report.html_reporter.data.results Check import: snakemake.report.html_reporter.data.rulegraph Check import: snakemake.report.html_reporter.data.rules Check import: snakemake.report.html_reporter.data.runtimes Check import: snakemake.report.html_reporter.data.timeline Check import: snakemake.report.html_reporter.template Check import: snakemake.report.html_reporter.template.components Check import: snakemake.report.rulegraph_spec Check import: snakemake.resources Check import: snakemake.ruleinfo Check import: snakemake.rules Check import: snakemake.scheduler Check import: snakemake.script Check import: snakemake.settings Check import: snakemake.shell Check import: snakemake.sourcecache Check import: snakemake.spawn_jobs Check import: snakemake.storage Check import: snakemake.target_jobs Check import: snakemake.template_rendering Check import: snakemake.template_rendering.jinja2 Check import: snakemake.template_rendering.yte Check import: snakemake.unit_tests Check import: snakemake.unit_tests.templates Check import: snakemake.utils Check import: snakemake.workflow Check import: snakemake.wrapper + ignore=' --ignore-glob=tests/test_google_lifesciences/*' + k='not test_deploy_sources' + ignore=' --ignore-glob=tests/test_google_lifesciences/* --ignore-glob=tests/test_conda_python_3_7_script/*' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/snakemake-8.10.8/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest -v -k 'not test_deploy_sources' '--ignore-glob=tests/test_google_lifesciences/*' '--ignore-glob=tests/test_conda_python_3_7_script/*' ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-7.4.3, pluggy-1.3.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/snakemake-8.10.8 collecting ... collected 53 items / 1 deselected / 52 selected tests/test_args.py::test_parse_batch PASSED [ 1%] tests/test_executor_test_suite.py::TestWorkflows::test_simple_workflow PASSED [ 3%] tests/test_executor_test_suite.py::TestWorkflows::test_group_workflow PASSED [ 5%] tests/test_expand.py::test_simple_expand PASSED [ 7%] tests/test_expand.py::test_allow_missing PASSED [ 9%] tests/test_io.py::test_wildcard_regex PASSED [ 11%] tests/test_io.py::test_expand PASSED [ 13%] tests/test_linting.py::test_lint[absolute_paths-positive] PASSED [ 15%] tests/test_linting.py::test_lint[absolute_paths-negative] PASSED [ 17%] tests/test_linting.py::test_lint[envvars-positive] PASSED [ 19%] tests/test_linting.py::test_lint[envvars-negative] PASSED [ 21%] tests/test_linting.py::test_lint[iofile_by_index-positive] PASSED [ 23%] tests/test_linting.py::test_lint[iofile_by_index-negative] PASSED [ 25%] tests/test_linting.py::test_lint[log_directive-positive] PASSED [ 26%] tests/test_linting.py::test_lint[log_directive-negative] PASSED [ 28%] tests/test_linting.py::test_lint[long_run-positive] PASSED [ 30%] tests/test_linting.py::test_lint[long_run-negative] PASSED [ 32%] tests/test_linting.py::test_lint[missing_software_definition-positive] PASSED [ 34%] tests/test_linting.py::test_lint[missing_software_definition-negative] PASSED [ 36%] tests/test_linting.py::test_lint[mixed_func_and_rules-positive] PASSED [ 38%] tests/test_linting.py::test_lint[mixed_func_and_rules-negative] PASSED [ 40%] tests/test_linting.py::test_lint[not_used_params-positive] PASSED [ 42%] tests/test_linting.py::test_lint[not_used_params-negative] PASSED [ 44%] tests/test_linting.py::test_lint[params_prefix-positive] PASSED [ 46%] tests/test_linting.py::test_lint[params_prefix-negative] PASSED [ 48%] tests/test_linting.py::test_lint[path_add-positive] PASSED [ 50%] tests/test_linting.py::test_lint[path_add-negative] PASSED [ 51%] tests/test_linting.py::test_lint[singularity-positive] PASSED [ 53%] tests/test_linting.py::test_lint[singularity-negative] PASSED [ 55%] tests/test_linting.py::test_lint[tab_usage-positive] PASSED [ 57%] tests/test_linting.py::test_lint[tab_usage-negative] PASSED [ 59%] tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 61%] tests/test_schema.py::test_config PASSED [ 63%] tests/test_schema.py::test_config_ref PASSED [ 65%] tests/test_schema.py::test_dataframe PASSED [ 67%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_shebang_and_second_manifest PASSED [ 69%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_with_shebang PASSED [ 71%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_without_shebang PASSED [ 73%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_empty_line_without_shebang PASSED [ 75%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_is_case_insensitive PASSED [ 76%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spacing_has_no_impact PASSED [ 78%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_formatting_not_touched_even_if_wrong PASSED [ 80%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spelt_wrong PASSED [ 82%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_shebang PASSED [ 84%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_without_shebang PASSED [ 86%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_spacing_around_language PASSED [ 88%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_has_non_cargo_block PASSED [ 90%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_missing_closing_fence PASSED [ 92%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_not_in_first_comment_block PASSED [ 94%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_outer_line_doc_comment PASSED [ 96%] tests/test_script.py::TestBashEncoder::test_named_list_one_named_one_str PASSED [ 98%] tests/test_script.py::TestBashEncoder::test_named_list_named_is_list PASSED [100%] =============================== warnings summary =============================== tests/test_executor_test_suite.py::TestWorkflows::test_simple_workflow :488: DeprecationWarning: Type google.protobuf.pyext._message.ScalarMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14. tests/test_executor_test_suite.py::TestWorkflows::test_simple_workflow :488: DeprecationWarning: Type google.protobuf.pyext._message.MessageMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14. tests/test_executor_test_suite.py::TestWorkflows::test_simple_workflow /usr/lib64/python3.12/site-packages/google/protobuf/internal/well_known_types.py:92: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). _EPOCH_DATETIME = datetime.utcfromtimestamp(0) tests/test_schema.py: 12 warnings /builddir/build/BUILD/snakemake-8.10.8/snakemake/utils.py:52: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need. from jsonschema import validators, RefResolver -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========== 52 passed, 1 deselected, 15 warnings in 90.36s (0:01:30) =========== + RPM_EC=0 ++ jobs -p + exit 0 Processing files: snakemake-8.10.8-1.fc41.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.2gwoVV + umask 022 + cd /builddir/build/BUILD + cd snakemake-8.10.8 + DOCDIR=/builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/doc/snakemake + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.10.8/CHANGELOG.md /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.10.8/README.md /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.10.8/README-nano.md /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.10.8/README-vim.md /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64/usr/share/doc/snakemake + RPM_EC=0 ++ jobs -p + exit 0 Provides: python3.12dist(snakemake) = 8.10.8 python3dist(snakemake) = 8.10.8 snakemake = 8.10.8-1.fc41 vim-snakemake = 8.10.8-1.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: (python3.12dist(conda-inject) < 2~~ with python3.12dist(conda-inject) >= 1.3.1) (python3.12dist(dpath) < 3~~ with python3.12dist(dpath) >= 2.1.6) (python3.12dist(jinja2) < 4~~ with python3.12dist(jinja2) >= 3) (python3.12dist(pulp) < 2.9~~ with python3.12dist(pulp) >= 2.3.1) (python3.12dist(requests) < 3~~ with python3.12dist(requests) >= 2.8.1) (python3.12dist(smart-open) < 8~~ with python3.12dist(smart-open) >= 3) (python3.12dist(snakemake-interface-common) < 2~~ with python3.12dist(snakemake-interface-common) >= 1.17) (python3.12dist(snakemake-interface-executor-plugins) < 10~~ with python3.12dist(snakemake-interface-executor-plugins) >= 9.1) (python3.12dist(snakemake-interface-report-plugins) < 2~~ with python3.12dist(snakemake-interface-report-plugins) >= 1) (python3.12dist(snakemake-interface-storage-plugins) < 4~~ with python3.12dist(snakemake-interface-storage-plugins) >= 3.1) (python3.12dist(toposort) < 2~~ with python3.12dist(toposort) >= 1.10) (python3.12dist(yte) < 2~~ with python3.12dist(yte) >= 1.5.1) /usr/bin/python3 python(abi) = 3.12 python3.12dist(appdirs) python3.12dist(configargparse) python3.12dist(connection-pool) >= 0.0.3 python3.12dist(datrie) python3.12dist(docutils) python3.12dist(gitpython) python3.12dist(humanfriendly) python3.12dist(immutables) python3.12dist(jsonschema) python3.12dist(nbformat) python3.12dist(packaging) python3.12dist(psutil) python3.12dist(pyyaml) python3.12dist(reretry) python3.12dist(stopit) python3.12dist(tabulate) python3.12dist(throttler) python3.12dist(wrapt) Obsoletes: snakemake+azure < 8.1.0-1 snakemake+google-cloud < 8.1.0-1 snakemake-doc < 8.2.1-2 Processing files: snakemake+reports-8.10.8-1.fc41.noarch Provides: python3.12dist(snakemake[reports]) = 8.10.8 python3dist(snakemake[reports]) = 8.10.8 snakemake+reports = 8.10.8-1.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(pygments) Processing files: snakemake+messaging-8.10.8-1.fc41.noarch Provides: python3.12dist(snakemake[messaging]) = 8.10.8 python3dist(snakemake[messaging]) = 8.10.8 snakemake+messaging = 8.10.8-1.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(slack-sdk) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64 Wrote: /builddir/build/SRPMS/snakemake-8.10.8-1.fc41.src.rpm Wrote: /builddir/build/RPMS/snakemake+reports-8.10.8-1.fc41.noarch.rpm Wrote: /builddir/build/RPMS/snakemake+messaging-8.10.8-1.fc41.noarch.rpm Wrote: /builddir/build/RPMS/snakemake-8.10.8-1.fc41.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.US1Xv2 + umask 022 + cd /builddir/build/BUILD + cd snakemake-8.10.8 + /usr/bin/rm -rf /builddir/build/BUILDROOT/snakemake-8.10.8-1.fc41.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.tCoKl0 + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/snakemake-8.10.8-SPECPARTS + rm -rf snakemake-8.10.8 snakemake-8.10.8.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild snakemake-8.10.8-1.fc41.src.rpm Finish: build phase for snakemake-8.10.8-1.fc41.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-40-x86_64-1713614647.004945/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/snakemake-8.10.8-1.fc41.src.rpm) Config(child) 2 minutes 44 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "snakemake", "epoch": null, "version": "8.10.8", "release": "1.fc41", "arch": "noarch" }, { "name": "snakemake+reports", "epoch": null, "version": "8.10.8", "release": "1.fc41", "arch": "noarch" }, { "name": "snakemake+messaging", "epoch": null, "version": "8.10.8", "release": "1.fc41", "arch": "noarch" }, { "name": "snakemake", "epoch": null, "version": "8.10.8", "release": "1.fc41", "arch": "src" } ] } RPMResults finished