Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c193' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7318868-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.72 PID: 6243 Logging PID: 6244 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7318868, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '93f4e4eea35e0ab17eba4277daf021f55247a5a3', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:7/libsbml', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'libsbml', 'package_version': '5.20.2-8', 'project_dirname': 'openblas-0.3.23:pr:7', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/gui1ty', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/gui1ty', 'tags': [], 'task_id': '7318868-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:7/libsbml /var/lib/copr-rpmbuild/workspace/workdir-ovcrsia5/libsbml --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:7/libsbml', '/var/lib/copr-rpmbuild/workspace/workdir-ovcrsia5/libsbml', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-ovcrsia5/libsbml'... Running: git checkout 93f4e4eea35e0ab17eba4277daf021f55247a5a3 -- cmd: ['git', 'checkout', '93f4e4eea35e0ab17eba4277daf021f55247a5a3', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ovcrsia5/libsbml rc: 0 stdout: stderr: Note: switching to '93f4e4eea35e0ab17eba4277daf021f55247a5a3'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 93f4e4e automatic import of libsbml Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ovcrsia5/libsbml rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading libsbml-5.20.2.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o libsbml-5.20.2.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23:pr:7/libsbml/libsbml-5.20.2.tar.gz/md5/2c3955b44610f3b757406f59824606a8/libsbml-5.20.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 27.4M 100 27.4M 0 0 1206k 0 0:00:23 0:00:23 --:--:-- 3925k INFO: Reading stdout from command: md5sum libsbml-5.20.2.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ovcrsia5/libsbml/libsbml.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ovcrsia5/libsbml --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1713306730.316281 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ovcrsia5/libsbml/libsbml.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ovcrsia5/libsbml --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1713306730.316281 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-ovcrsia5/libsbml/libsbml.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.5 INFO: Mock Version: 5.5 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1713306730.316281/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1713306730.316281/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/facf673c20c1371948640137d0b6ff8c8a1bfeddc5a2dfbf75033e6952f81959/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/facf673c20c1371948640137d0b6ff8c8a1bfeddc5a2dfbf75033e6952f81959/merged) with podman image umount INFO: Using 'dnf' instead of 'dnf5' for bootstrap chroot INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf5 tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 8.5 MB/s | 3.3 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 14 MB/s | 17 MB 00:01 fedora 13 MB/s | 20 MB 00:01 Last metadata expiration check: 0:00:01 ago on Tue Apr 16 22:32:25 2024. Dependencies resolved. ========================================================================================================== Package Arch Version Repository Size ========================================================================================================== Installing: dnf5 x86_64 5.1.17-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 691 k dnf5-plugins x86_64 5.1.17-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 351 k Installing dependencies: fmt x86_64 10.2.1-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 125 k libdnf5 x86_64 5.1.17-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 997 k libdnf5-cli x86_64 5.1.17-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 231 k sdbus-cpp x86_64 1.5.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 113 k systemd-libs x86_64 255.4-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 708 k Transaction Summary ========================================================================================================== Install 7 Packages Total download size: 3.1 M Installed size: 8.8 M Downloading Packages: (1/7): fmt-10.2.1-4.fc41.x86_64.rpm 370 kB/s | 125 kB 00:00 (2/7): dnf5-plugins-5.1.17-1.fc41.x86_64.rpm 882 kB/s | 351 kB 00:00 (3/7): dnf5-5.1.17-1.fc41.x86_64.rpm 1.5 MB/s | 691 kB 00:00 (4/7): libdnf5-cli-5.1.17-1.fc41.x86_64.rpm 2.4 MB/s | 231 kB 00:00 (5/7): sdbus-cpp-1.5.0-2.fc41.x86_64.rpm 1.1 MB/s | 113 kB 00:00 (6/7): systemd-libs-255.4-1.fc41.x86_64.rpm 5.6 MB/s | 708 kB 00:00 (7/7): libdnf5-5.1.17-1.fc41.x86_64.rpm 3.4 MB/s | 997 kB 00:00 -------------------------------------------------------------------------------- Total 5.0 MB/s | 3.1 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : fmt-10.2.1-4.fc41.x86_64 1/7 Installing : libdnf5-5.1.17-1.fc41.x86_64 2/7 Installing : libdnf5-cli-5.1.17-1.fc41.x86_64 3/7 Installing : systemd-libs-255.4-1.fc41.x86_64 4/7 Installing : sdbus-cpp-1.5.0-2.fc41.x86_64 5/7 Installing : dnf5-5.1.17-1.fc41.x86_64 6/7 Installing : dnf5-plugins-5.1.17-1.fc41.x86_64 7/7 Running scriptlet: dnf5-plugins-5.1.17-1.fc41.x86_64 7/7 Installed: dnf5-5.1.17-1.fc41.x86_64 dnf5-plugins-5.1.17-1.fc41.x86_64 fmt-10.2.1-4.fc41.x86_64 libdnf5-5.1.17-1.fc41.x86_64 libdnf5-cli-5.1.17-1.fc41.x86_64 sdbus-cpp-1.5.0-2.fc41.x86_64 systemd-libs-255.4-1.fc41.x86_64 Complete! INFO: Switching package manager from dnf to the dnf5 (direct choice) Finish(bootstrap): installing dnf5 tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1713306730.316281/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 python3-dnf-4.19.2-1.fc41.noarch yum-4.19.2-1.fc41.noarch dnf5-5.1.17-1.fc41.x86_64 dnf5-plugins-5.1.17-1.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 3.2 MiB/s | 20.9 MiB | 00m06s Copr repository 100% | 15.8 MiB/s | 3.3 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 6.5 MiB/s | 17.2 MiB | 00m03s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.1 MiB bzip2 x86_64 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 91.7 KiB coreutils x86_64 9.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.5 MiB cpio x86_64 2.15-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB diffutils x86_64 3.10-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB fedora-release-common noarch 41-0.9 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19.2 KiB findutils x86_64 1:4.9.0-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB gawk x86_64 5.3.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB glibc-minimal-langpack x86_64 2.39.9000-10.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B grep x86_64 3.11-7.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB gzip x86_64 1.13-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 385.0 KiB info x86_64 7.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 357.8 KiB patch x86_64 2.7.6-24.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 262.8 KiB redhat-rpm-config noarch 288-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183.3 KiB rpm-build x86_64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 173.7 KiB sed x86_64 4.9-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.5 KiB shadow-utils x86_64 2:4.15.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.1 MiB tar x86_64 2:1.35-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.9 MiB unzip x86_64 6.0-63.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 382.8 KiB util-linux x86_64 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.7 MiB which x86_64 2.21-41.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 80.2 KiB xz x86_64 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB Installing dependencies: alternatives x86_64 1.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 62.3 KiB ansible-srpm-macros noarch 1-15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.7 KiB audit-libs x86_64 4.0.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 327.3 KiB authselect x86_64 1.5.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 153.6 KiB authselect-libs x86_64 1.5.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 818.2 KiB basesystem noarch 11-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B binutils x86_64 2.42.50-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 27.2 MiB binutils-gold x86_64 2.42.50-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB bzip2-libs x86_64 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 80.7 KiB ca-certificates noarch 2023.2.62_v7.0.401-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB coreutils-common x86_64 9.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.2 MiB cracklib x86_64 2.9.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 238.9 KiB crypto-policies noarch 20240320-1.git58e3d95.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 119.2 KiB curl x86_64 8.7.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 758.1 KiB cyrus-sasl-lib x86_64 2.1.28-19.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB debugedit x86_64 5.0-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 199.0 KiB dwz x86_64 0.15-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 290.9 KiB ed x86_64 1.20.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146.5 KiB efi-srpm-macros noarch 5-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 KiB elfutils x86_64 0.191-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 MiB elfutils-debuginfod-client x86_64 0.191-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64.9 KiB elfutils-default-yama-scope noarch 0.191-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB elfutils-libelf x86_64 0.191-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB elfutils-libs x86_64 0.191-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 646.2 KiB fedora-gpg-keys noarch 41-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 125.0 KiB fedora-release noarch 41-0.9 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B fedora-release-identity-basic noarch 41-0.9 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0 B fedora-repos noarch 41-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 KiB fedora-repos-rawhide noarch 41-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 KiB file x86_64 5.45-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.5 KiB file-libs x86_64 5.45-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.9 MiB filesystem x86_64 3.18-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.0 B fonts-srpm-macros noarch 1:2.0.5-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55.3 KiB forge-srpm-macros noarch 0.3.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.0 KiB fpc-srpm-macros noarch 1.3-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0 B gdb-minimal x86_64 14.2-4.fc41 copr_base 12.7 MiB gdbm x86_64 1:1.23-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 460.9 KiB gdbm-libs x86_64 1:1.23-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121.9 KiB ghc-srpm-macros noarch 1.9.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 747.0 B glibc x86_64 2.39.9000-10.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.7 MiB glibc-common x86_64 2.39.9000-10.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB glibc-gconv-extra x86_64 2.39.9000-10.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.8 MiB gmp x86_64 1:6.3.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 803.4 KiB gnat-srpm-macros noarch 6-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 KiB go-srpm-macros 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KiB pyproject-srpm-macros noarch 1.12.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 KiB python-srpm-macros noarch 3.12-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 50.5 KiB qt5-srpm-macros noarch 5.15.13-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 492.0 B qt6-srpm-macros noarch 6.7.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline x86_64 8.2-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 489.2 KiB rpm x86_64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB rpm-build-libs x86_64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 198.4 KiB rpm-libs x86_64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 709.9 KiB rpm-sequoia x86_64 1.6.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB rust-srpm-macros noarch 26.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.14.5-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.4 KiB sqlite-libs x86_64 3.45.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB systemd-libs x86_64 255.4-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 MiB util-linux-core x86_64 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB xxhash-libs x86_64 0.8.2-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.5 KiB xz-libs x86_64 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.8 KiB zig-srpm-macros noarch 1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip x86_64 3.0-40.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 703.2 KiB zlib-ng-compat x86_64 2.1.6-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134.0 KiB zstd x86_64 1.5.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 52 MiB. Need to download 52 MiB. After this operation 179 MiB will be used (install 179 MiB, remove 0 B). [ 1/153] bzip2-0:1.0.8-18.fc40.x86_64 100% | 160.1 KiB/s | 52.4 KiB | 00m00s [ 2/153] cpio-0:2.15-1.fc40.x86_64 100% | 1.2 MiB/s | 285.1 KiB | 00m00s [ 3/153] diffutils-0:3.10-5.fc40.x86_6 100% | 1.4 MiB/s | 396.8 KiB | 00m00s [ 4/153] coreutils-0:9.5-1.fc41.x86_64 100% | 1.3 MiB/s | 1.1 MiB | 00m01s [ 5/153] fedora-release-common-0:41-0. 100% | 236.6 KiB/s | 21.5 KiB | 00m00s [ 6/153] findutils-1:4.9.0-8.fc40.x86_ 100% | 1.9 MiB/s | 482.5 KiB | 00m00s [ 7/153] glibc-minimal-langpack-0:2.39 100% | 1.2 MiB/s | 106.2 KiB | 00m00s [ 8/153] bash-0:5.2.26-3.fc40.x86_64 100% | 1.4 MiB/s | 1.8 MiB | 00m01s [ 9/153] grep-0:3.11-7.fc40.x86_64 100% | 1.6 MiB/s | 289.7 KiB | 00m00s [ 10/153] gzip-0:1.13-1.fc40.x86_64 100% | 891.2 KiB/s | 164.0 KiB | 00m00s [ 11/153] info-0:7.1-2.fc40.x86_64 100% | 1.3 MiB/s | 182.3 KiB | 00m00s [ 12/153] redhat-rpm-config-0:288-1.fc4 100% | 723.8 KiB/s | 75.3 KiB | 00m00s [ 13/153] gawk-0:5.3.0-3.fc40.x86_64 100% | 1.5 MiB/s | 1.1 MiB | 00m01s [ 14/153] patch-0:2.7.6-24.fc40.x86_64 100% | 889.2 KiB/s | 130.7 KiB | 00m00s [ 15/153] rpm-build-0:4.19.1.1-1.fc40.x 100% | 755.8 KiB/s | 70.3 KiB | 00m00s [ 16/153] sed-0:4.9-1.fc40.x86_64 100% | 1.3 MiB/s | 309.2 KiB | 00m00s [ 17/153] shadow-utils-2:4.15.1-2.fc41. 100% | 2.9 MiB/s | 1.3 MiB | 00m00s [ 18/153] unzip-0:6.0-63.fc40.x86_64 100% | 862.3 KiB/s | 184.5 KiB | 00m00s [ 19/153] which-0:2.21-41.fc40.x86_64 100% | 560.1 KiB/s | 41.4 KiB | 00m00s [ 20/153] tar-2:1.35-3.fc40.x86_64 100% | 1.6 MiB/s | 847.4 KiB | 00m01s [ 21/153] xz-1:5.4.6-3.fc41.x86_64 100% | 3.1 MiB/s | 531.9 KiB | 00m00s [ 22/153] xz-libs-1:5.4.6-3.fc41.x86_64 100% | 1.4 MiB/s | 110.2 KiB | 00m00s [ 23/153] audit-libs-0:4.0.1-1.fc41.x86 100% | 1.5 MiB/s | 125.6 KiB | 00m00s [ 24/153] authselect-libs-0:1.5.0-5.fc4 100% | 2.5 MiB/s | 204.9 KiB | 00m00s [ 25/153] libblkid-0:2.40-13.fc41.x86_6 100% | 1.5 MiB/s | 124.3 KiB | 00m00s [ 26/153] util-linux-0:2.40-13.fc41.x86 100% | 1.9 MiB/s | 1.2 MiB | 00m01s [ 27/153] libcap-ng-0:0.8.5-1.fc41.x86_ 100% | 351.4 KiB/s | 32.3 KiB | 00m00s [ 28/153] libmount-0:2.40-13.fc41.x86_6 100% | 2.1 MiB/s | 154.7 KiB | 00m00s [ 29/153] libselinux-0:3.6-4.fc40.x86_6 100% | 1.3 MiB/s | 87.5 KiB | 00m00s [ 30/153] libfdisk-0:2.40-13.fc41.x86_6 100% | 587.6 KiB/s | 159.3 KiB | 00m00s [ 31/153] libsmartcols-0:2.40-13.fc41.x 100% | 1.1 MiB/s | 83.3 KiB | 00m00s [ 32/153] libutempter-0:1.2.1-13.fc40.x 100% | 388.3 KiB/s | 26.4 KiB | 00m00s [ 33/153] libuuid-0:2.40-13.fc41.x86_64 100% | 384.2 KiB/s | 28.4 KiB | 00m00s [ 34/153] ncurses-libs-0:6.4-12.2024012 100% | 2.8 MiB/s | 332.5 KiB | 00m00s [ 35/153] pam-libs-0:1.6.1-1.fc41.x86_6 100% | 739.0 KiB/s | 56.9 KiB | 00m00s [ 36/153] glibc-0:2.39.9000-10.fc41.x86 100% | 2.3 MiB/s | 2.2 MiB | 00m01s [ 37/153] pam-0:1.6.1-1.fc41.x86_64 100% | 1.9 MiB/s | 516.8 KiB | 00m00s [ 38/153] readline-0:8.2-8.fc40.x86_64 100% | 1.2 MiB/s | 213.3 KiB | 00m00s [ 39/153] systemd-libs-0:255.4-1.fc41.x 100% | 3.3 MiB/s | 707.8 KiB | 00m00s [ 40/153] zlib-ng-compat-0:2.1.6-2.fc40 100% | 1.2 MiB/s | 77.1 KiB | 00m00s [ 41/153] bzip2-libs-0:1.0.8-18.fc40.x8 100% | 628.6 KiB/s | 40.9 KiB | 00m00s [ 42/153] libacl-0:2.3.2-1.fc40.x86_64 100% | 359.3 KiB/s | 24.4 KiB | 00m00s [ 43/153] util-linux-core-0:2.40-13.fc4 100% | 2.3 MiB/s | 519.8 KiB | 00m00s [ 44/153] libcap-0:2.69-8.fc41.x86_64 100% | 1.2 MiB/s | 85.5 KiB | 00m00s [ 45/153] libgcc-0:14.0.1-0.15.fc41.x86 100% | 1.9 MiB/s | 125.6 KiB | 00m00s [ 46/153] lz4-libs-0:1.9.4-6.fc40.x86_6 100% | 873.0 KiB/s | 67.2 KiB | 00m00s [ 47/153] libattr-0:2.5.2-3.fc40.x86_64 100% | 225.0 KiB/s | 18.0 KiB | 00m00s [ 48/153] libzstd-0:1.5.6-1.fc41.x86_64 100% | 2.0 MiB/s | 308.9 KiB | 00m00s [ 49/153] libeconf-0:0.6.2-1.fc41.x86_6 100% | 431.4 KiB/s | 31.9 KiB | 00m00s [ 50/153] libsemanage-0:3.6-3.fc40.x86_ 100% | 1.7 MiB/s | 116.4 KiB | 00m00s [ 51/153] libxcrypt-0:4.4.36-5.fc40.x86 100% | 1.9 MiB/s | 118.1 KiB | 00m00s [ 52/153] debugedit-0:5.0-14.fc40.x86_6 100% | 1.1 MiB/s | 78.7 KiB | 00m00s [ 53/153] setup-0:2.14.5-2.fc40.noarch 100% | 1.4 MiB/s | 148.1 KiB | 00m00s [ 54/153] elfutils-libelf-0:0.191-5.fc4 100% | 1.8 MiB/s | 208.7 KiB | 00m00s [ 55/153] file-0:5.45-5.fc41.x86_64 100% | 598.5 KiB/s | 49.1 KiB | 00m00s [ 56/153] elfutils-0:0.191-5.fc41.x86_6 100% | 2.2 MiB/s | 525.1 KiB | 00m00s [ 57/153] pkgconf-pkg-config-0:2.1.0-1. 100% | 118.3 KiB/s | 9.7 KiB | 00m00s [ 58/153] popt-0:1.19-6.fc40.x86_64 100% | 888.8 KiB/s | 59.6 KiB | 00m00s [ 59/153] rpm-build-libs-0:4.19.1.1-1.f 100% | 1.5 MiB/s | 95.0 KiB | 00m00s [ 60/153] rpm-libs-0:4.19.1.1-1.fc40.x8 100% | 2.9 MiB/s | 308.9 KiB | 00m00s [ 61/153] rpm-0:4.19.1.1-1.fc40.x86_64 100% | 2.7 MiB/s | 511.8 KiB | 00m00s [ 62/153] curl-0:8.7.1-1.fc41.x86_64 100% | 2.8 MiB/s | 305.9 KiB | 00m00s [ 63/153] libarchive-0:3.7.2-3.fc41.x86 100% | 2.8 MiB/s | 406.6 KiB | 00m00s [ 64/153] zstd-0:1.5.6-1.fc41.x86_64 100% | 1.6 MiB/s | 479.3 KiB | 00m00s [ 65/153] ansible-srpm-macros-0:1-15.fc 100% | 321.0 KiB/s | 20.9 KiB | 00m00s [ 66/153] dwz-0:0.15-6.fc40.x86_64 100% | 1.1 MiB/s | 137.8 KiB | 00m00s [ 67/153] glibc-gconv-extra-0:2.39.9000 100% | 5.8 MiB/s | 1.6 MiB | 00m00s [ 68/153] efi-srpm-macros-0:5-11.fc40.n 100% | 343.1 KiB/s | 22.3 KiB | 00m00s [ 69/153] binutils-0:2.42.50-6.fc41.x86 100% | 5.6 MiB/s | 6.3 MiB | 00m01s [ 70/153] fonts-srpm-macros-1:2.0.5-14. 100% | 363.3 KiB/s | 26.5 KiB | 00m00s [ 71/153] forge-srpm-macros-0:0.3.1-1.f 100% | 231.0 KiB/s | 19.4 KiB | 00m00s [ 72/153] fpc-srpm-macros-0:1.3-12.fc40 100% | 96.7 KiB/s | 7.8 KiB | 00m00s [ 73/153] ghc-srpm-macros-0:1.9.1-1.fc4 100% | 106.8 KiB/s | 9.0 KiB | 00m00s [ 74/153] gnat-srpm-macros-0:6-5.fc40.n 100% | 122.5 KiB/s | 8.8 KiB | 00m00s [ 75/153] go-srpm-macros-0:3.6.0-1.fc41 100% | 428.6 KiB/s | 27.9 KiB | 00m00s [ 76/153] kernel-srpm-macros-0:1.0-23.f 100% | 162.7 KiB/s | 9.8 KiB | 00m00s [ 77/153] lua-srpm-macros-0:1-13.fc40.n 100% | 150.5 KiB/s | 8.7 KiB | 00m00s [ 78/153] ocaml-srpm-macros-0:9-3.fc40. 100% | 156.4 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fedora-repos-0:41-0.1.noarch 100% | 155.7 KiB/s | 9.3 KiB | 00m00s [118/153] elfutils-debuginfod-client-0: 100% | 672.6 KiB/s | 38.3 KiB | 00m00s [119/153] elfutils-libs-0:0.191-5.fc41. 100% | 2.5 MiB/s | 258.5 KiB | 00m00s [120/153] libstdc++-0:14.0.1-0.15.fc41. 100% | 6.1 MiB/s | 880.7 KiB | 00m00s [121/153] p11-kit-trust-0:0.25.3-4.fc40 100% | 2.1 MiB/s | 131.5 KiB | 00m00s [122/153] coreutils-common-0:9.5-1.fc41 100% | 10.7 MiB/s | 2.1 MiB | 00m00s [123/153] p11-kit-0:0.25.3-4.fc40.x86_6 100% | 3.5 MiB/s | 475.5 KiB | 00m00s [124/153] alternatives-0:1.26-3.fc40.x8 100% | 1.0 MiB/s | 39.9 KiB | 00m00s [125/153] jansson-0:2.13.1-9.fc40.x86_6 100% | 1.2 MiB/s | 44.2 KiB | 00m00s [126/153] lua-libs-0:5.4.6-5.fc40.x86_6 100% | 2.1 MiB/s | 131.9 KiB | 00m00s [127/153] binutils-gold-0:2.42.50-6.fc4 100% | 7.4 MiB/s | 783.2 KiB | 00m00s [128/153] rpm-sequoia-0:1.6.0-2.fc40.x8 100% | 8.3 MiB/s | 847.5 KiB | 00m00s [129/153] libgomp-0:14.0.1-0.15.fc41.x8 100% | 4.1 MiB/s | 345.7 KiB | 00m00s 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MiB | 00m07s Running transaction [ 1/155] Verify package files 100% | 746.0 B/s | 153.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-9.fc41.x86_64 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-9.fc41.x86_64 [ 2/155] Prepare transaction 100% | 1.8 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:14.0.1-0. 100% | 132.9 MiB/s | 272.2 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.0.1-0.15.fc41.x86_64 >>> Stop post-install scriptlet: libgcc-0:14.0.1-0.15.fc41.x86_64 [ 4/155] Installing crypto-policies-0: 100% | 14.3 MiB/s | 146.2 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20240320-1.git58e3d95.fc41 >>> Stop post-install scriptlet: crypto-policies-0:20240320-1.git58e3d95.fc41.no [ 5/155] Installing fedora-release-ide 100% | 929.7 KiB/s | 952.0 B | 00m00s [ 6/155] Installing fedora-gpg-keys-0: 100% | 20.8 MiB/s | 170.1 KiB | 00m00s [ 7/155] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 8/155] 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00m00s [ 63/155] Installing alternatives-0:1.2 100% | 62.5 MiB/s | 64.0 KiB | 00m00s [ 64/155] Installing jansson-0:2.13.1-9 100% | 87.6 MiB/s | 89.7 KiB | 00m00s [ 65/155] Installing lua-libs-0:5.4.6-5 100% | 137.8 MiB/s | 282.3 KiB | 00m00s [ 66/155] Installing libtasn1-0:4.19.0- 100% | 173.3 MiB/s | 177.5 KiB | 00m00s [ 67/155] Installing libunistring-0:1.1 100% | 288.5 MiB/s | 1.7 MiB | 00m00s [ 68/155] Installing libidn2-0:2.3.7-1. 100% | 81.8 MiB/s | 335.0 KiB | 00m00s [ 69/155] Installing libpsl-0:0.21.5-3. 100% | 79.7 MiB/s | 81.6 KiB | 00m00s [ 70/155] Installing util-linux-core-0: 100% | 134.9 MiB/s | 1.5 MiB | 00m00s [ 71/155] Installing tar-2:1.35-3.fc40. 100% | 227.0 MiB/s | 3.0 MiB | 00m00s [ 72/155] Installing libsemanage-0:3.6- 100% | 96.1 MiB/s | 295.3 KiB | 00m00s [ 73/155] Installing shadow-utils-2:4.1 100% | 75.8 MiB/s | 4.2 MiB | 00m00s >>> Running pre-install scriptlet: libutempter-0:1.2.1-13.fc40.x86_64 >>> Stop pre-install scriptlet: 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post-install scriptlet: elfutils-default-yama-scope-0:0.191-5.fc41.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-5.fc41.noar [ 86/155] Installing cpio-0:2.15-1.fc40 100% | 157.1 MiB/s | 1.1 MiB | 00m00s [ 87/155] Installing diffutils-0:3.10-5 100% | 176.2 MiB/s | 1.6 MiB | 00m00s [ 88/155] Installing libpkgconf-0:2.1.0 100% | 73.6 MiB/s | 75.3 KiB | 00m00s [ 89/155] Installing pkgconf-0:2.1.0-1. 100% | 41.5 MiB/s | 84.9 KiB | 00m00s [ 90/155] Installing keyutils-libs-0:1. 100% | 54.5 MiB/s | 55.8 KiB | 00m00s [ 91/155] Installing libverto-0:0.3.2-8 100% | 30.5 MiB/s | 31.3 KiB | 00m00s [ 92/155] Installing libgomp-0:14.0.1-0 100% | 254.2 MiB/s | 520.6 KiB | 00m00s [ 93/155] Installing libffi-0:3.4.6-1.f 100% | 81.8 MiB/s | 83.8 KiB | 00m00s [ 94/155] Installing p11-kit-0:0.25.3-4 100% | 146.3 MiB/s | 2.2 MiB | 00m00s [ 95/155] Installing p11-kit-trust-0:0. 100% | 25.6 MiB/s | 393.1 KiB | 00m00s >>> Running post-install scriptlet: p11-kit-trust-0:0.25.3-4.fc40.x86_64 >>> Stop post-install scriptlet: p11-kit-trust-0:0.25.3-4.fc40.x86_64 [ 96/155] Installing openssl-libs-1:3.2 100% | 288.7 MiB/s | 7.8 MiB | 00m00s [ 97/155] Installing coreutils-0:9.5-1. 100% | 139.7 MiB/s | 5.6 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.n >>> Stop pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noar [ 98/155] Installing ca-certificates-0: 100% | 2.4 MiB/s | 2.3 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40. >>> Stop post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40.noa [ 99/155] Installing krb5-libs-0:1.21.2 100% | 153.0 MiB/s | 2.3 MiB | 00m00s [100/155] Installing libtirpc-0:1.3.4-1 100% | 66.6 MiB/s | 204.6 KiB | 00m00s [101/155] Installing gzip-0:1.13-1.fc40 100% | 76.3 MiB/s | 390.6 KiB | 00m00s [102/155] Installing authselect-libs-0: 100% | 74.0 MiB/s | 833.2 KiB | 00m00s [103/155] Installing libarchive-0:3.7.2 100% | 179.0 MiB/s | 916.6 KiB | 00m00s [104/155] Installing authselect-0:1.5.0 100% | 38.6 MiB/s | 157.9 KiB | 00m00s [105/155] Installing cracklib-0:2.9.11- 100% | 30.6 MiB/s | 250.3 KiB | 00m00s [106/155] Installing libpwquality-0:1.4 100% | 46.7 MiB/s | 430.1 KiB | 00m00s [107/155] Installing libnsl2-0:2.0.1-1. 100% | 28.8 MiB/s | 59.0 KiB | 00m00s [108/155] Installing pam-0:1.6.1-1.fc41 100% | 62.6 MiB/s | 1.8 MiB | 00m00s [109/155] Installing libssh-0:0.10.6-6. 100% | 125.8 MiB/s | 515.4 KiB | 00m00s [110/155] Installing rpm-sequoia-0:1.6. 100% | 202.7 MiB/s | 2.2 MiB | 00m00s [111/155] Installing rpm-libs-0:4.19.1. 100% | 173.7 MiB/s | 711.4 KiB | 00m00s [112/155] Installing libevent-0:2.1.12- 100% | 175.7 MiB/s | 899.4 KiB | 00m00s [113/155] Installing xxhash-libs-0:0.8. 100% | 87.8 MiB/s | 89.9 KiB | 00m00s [114/155] Installing libbrotli-0:1.1.0- 100% | 162.5 MiB/s | 831.8 KiB | 00m00s [115/155] Installing libnghttp2-0:1.61. 100% | 81.7 MiB/s | 167.2 KiB | 00m00s [116/155] Installing libtool-ltdl-0:2.4 100% | 65.7 MiB/s | 67.3 KiB | 00m00s [117/155] Installing openldap-0:2.6.7-1 100% | 124.8 MiB/s | 638.9 KiB | 00m00s [118/155] Installing libcurl-0:8.7.1-1. 100% | 194.0 MiB/s | 794.6 KiB | 00m00s [119/155] Installing elfutils-debuginfo 100% | 32.7 MiB/s | 66.9 KiB | 00m00s [120/155] Installing elfutils-libs-0:0. 100% | 158.2 MiB/s | 648.0 KiB | 00m00s [121/155] Installing binutils-gold-0:2. 100% | 84.6 MiB/s | 2.0 MiB | 00m00s >>> Running post-install scriptlet: binutils-gold-0:2.42.50-6.fc41.x86_64 >>> Stop post-install scriptlet: binutils-gold-0:2.42.50-6.fc41.x86_64 [122/155] Installing binutils-0:2.42.50 100% | 218.0 MiB/s | 27.2 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.42.50-6.fc41.x86_64 >>> Stop post-install scriptlet: binutils-0:2.42.50-6.fc41.x86_64 [123/155] Installing elfutils-0:0.191-5 100% | 212.7 MiB/s | 2.6 MiB | 00m00s [124/155] Installing gdb-minimal-0:14.2 100% | 308.8 MiB/s | 12.7 MiB | 00m00s [125/155] Installing debugedit-0:5.0-14 100% | 98.5 MiB/s | 201.7 KiB | 00m00s [126/155] Installing rpm-build-libs-0:4 100% | 194.5 MiB/s | 199.2 KiB | 00m00s [127/155] Installing curl-0:8.7.1-1.fc4 100% | 35.4 MiB/s | 760.6 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Stop pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 [128/155] Installing rpm-0:4.19.1.1-1.f 100% | 85.6 MiB/s | 2.4 MiB | 00m00s [129/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [130/155] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [131/155] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [132/155] Installing pkgconf-m4-0:2.1.0 100% | 0.0 B/s | 14.3 KiB | 00m00s [133/155] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [134/155] Installing rust-srpm-macros-0 100% | 5.4 MiB/s | 5.6 KiB | 00m00s [135/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [136/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 768.0 B | 00m00s [137/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [138/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [139/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [140/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [141/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [142/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [143/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [144/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [145/155] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [146/155] Installing fonts-srpm-macros- 100% | 55.1 MiB/s | 56.5 KiB | 00m00s [147/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.3 KiB | 00m00s [148/155] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [149/155] Installing python-srpm-macros 100% | 50.5 MiB/s | 51.7 KiB | 00m00s [150/155] Installing redhat-rpm-config- 100% | 61.8 MiB/s | 189.7 KiB | 00m00s [151/155] Installing rpm-build-0:4.19.1 100% | 44.4 MiB/s | 182.0 KiB | 00m00s [152/155] Installing pyproject-srpm-mac 100% | 2.0 MiB/s | 2.1 KiB | 00m00s [153/155] Installing util-linux-0:2.40- 100% | 89.0 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40-13.fc41.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40-13.fc41.x86_64 [154/155] Installing which-0:2.21-41.fc 100% | 40.3 MiB/s | 82.4 KiB | 00m00s [155/155] Installing info-0:7.1-2.fc40. 100% | 282.2 KiB/s | 358.2 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-9.fc41.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-9.fc41.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.f >>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc41.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc41.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-10.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-10.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 Warning: skipped PGP checks for 153 package(s). Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-3.fc40.x86_64 ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-1.fc41.x86_64 authselect-1.5.0-5.fc41.x86_64 authselect-libs-1.5.0-5.fc41.x86_64 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.x86_64 binutils-2.42.50-6.fc41.x86_64 binutils-gold-2.42.50-6.fc41.x86_64 bzip2-1.0.8-18.fc40.x86_64 bzip2-libs-1.0.8-18.fc40.x86_64 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.5-1.fc41.x86_64 coreutils-common-9.5-1.fc41.x86_64 cpio-2.15-1.fc40.x86_64 cracklib-2.9.11-5.fc40.x86_64 crypto-policies-20240320-1.git58e3d95.fc41.noarch curl-8.7.1-1.fc41.x86_64 cyrus-sasl-lib-2.1.28-19.fc40.x86_64 debugedit-5.0-14.fc40.x86_64 diffutils-3.10-5.fc40.x86_64 dwz-0.15-6.fc40.x86_64 ed-1.20.1-1.fc41.x86_64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-5.fc41.x86_64 elfutils-debuginfod-client-0.191-5.fc41.x86_64 elfutils-default-yama-scope-0.191-5.fc41.noarch elfutils-libelf-0.191-5.fc41.x86_64 elfutils-libs-0.191-5.fc41.x86_64 fedora-gpg-keys-41-0.1.noarch fedora-release-41-0.9.noarch fedora-release-common-41-0.9.noarch fedora-release-identity-basic-41-0.9.noarch fedora-repos-41-0.1.noarch fedora-repos-rawhide-41-0.1.noarch file-5.45-5.fc41.x86_64 file-libs-5.45-5.fc41.x86_64 filesystem-3.18-9.fc41.x86_64 findutils-4.9.0-8.fc40.x86_64 fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.x86_64 gdb-minimal-14.2-4.fc41.x86_64 gdbm-1.23-6.fc40.x86_64 gdbm-libs-1.23-6.fc40.x86_64 ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-10.fc41.x86_64 glibc-common-2.39.9000-10.fc41.x86_64 glibc-gconv-extra-2.39.9000-10.fc41.x86_64 glibc-minimal-langpack-2.39.9000-10.fc41.x86_64 gmp-6.3.0-1.fc41.x86_64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-7.fc40.x86_64 gzip-1.13-1.fc40.x86_64 info-7.1-2.fc40.x86_64 jansson-2.13.1-9.fc40.x86_64 kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.x86_64 krb5-libs-1.21.2-5.fc40.x86_64 libacl-2.3.2-1.fc40.x86_64 libarchive-3.7.2-3.fc41.x86_64 libattr-2.5.2-3.fc40.x86_64 libblkid-2.40-13.fc41.x86_64 libbrotli-1.1.0-3.fc40.x86_64 libcap-2.69-8.fc41.x86_64 libcap-ng-0.8.5-1.fc41.x86_64 libcom_err-1.47.0-5.fc40.x86_64 libcurl-8.7.1-1.fc41.x86_64 libeconf-0.6.2-1.fc41.x86_64 libevent-2.1.12-12.fc40.x86_64 libfdisk-2.40-13.fc41.x86_64 libffi-3.4.6-1.fc41.x86_64 libgcc-14.0.1-0.15.fc41.x86_64 libgomp-14.0.1-0.15.fc41.x86_64 libidn2-2.3.7-1.fc40.x86_64 libmount-2.40-13.fc41.x86_64 libnghttp2-1.61.0-1.fc41.x86_64 libnsl2-2.0.1-1.fc40.x86_64 libpkgconf-2.1.0-1.fc40.x86_64 libpsl-0.21.5-3.fc40.x86_64 libpwquality-1.4.5-9.fc40.x86_64 libselinux-3.6-4.fc40.x86_64 libsemanage-3.6-3.fc40.x86_64 libsepol-3.6-3.fc40.x86_64 libsmartcols-2.40-13.fc41.x86_64 libssh-0.10.6-6.fc41.x86_64 libssh-config-0.10.6-6.fc41.noarch libstdc++-14.0.1-0.15.fc41.x86_64 libtasn1-4.19.0-6.fc40.x86_64 libtirpc-1.3.4-1.rc3.fc41.x86_64 libtool-ltdl-2.4.7-10.fc40.x86_64 libunistring-1.1-7.fc41.x86_64 libutempter-1.2.1-13.fc40.x86_64 libuuid-2.40-13.fc41.x86_64 libverto-0.3.2-8.fc40.x86_64 libxcrypt-4.4.36-5.fc40.x86_64 libxml2-2.12.6-1.fc41.x86_64 libzstd-1.5.6-1.fc41.x86_64 lua-libs-5.4.6-5.fc40.x86_64 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.x86_64 mpfr-4.2.1-3.fc40.x86_64 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.x86_64 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.7-1.fc40.x86_64 openssl-libs-3.2.1-6.fc41.x86_64 p11-kit-0.25.3-4.fc40.x86_64 p11-kit-trust-0.25.3-4.fc40.x86_64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-1.fc41.x86_64 pam-libs-1.6.1-1.fc41.x86_64 patch-2.7.6-24.fc40.x86_64 pcre2-10.43-1.fc41.x86_64 pcre2-syntax-10.43-1.fc41.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.0-1.fc40.x86_64 pkgconf-m4-2.1.0-1.fc40.noarch pkgconf-pkg-config-2.1.0-1.fc40.x86_64 popt-1.19-6.fc40.x86_64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-9.fc41.noarch qt5-srpm-macros-5.15.13-1.fc41.noarch qt6-srpm-macros-6.7.0-1.fc41.noarch readline-8.2-8.fc40.x86_64 redhat-rpm-config-288-1.fc41.noarch rpm-4.19.1.1-1.fc40.x86_64 rpm-build-4.19.1.1-1.fc40.x86_64 rpm-build-libs-4.19.1.1-1.fc40.x86_64 rpm-libs-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 rust-srpm-macros-26.2-1.fc41.noarch sed-4.9-1.fc40.x86_64 setup-2.14.5-2.fc40.noarch shadow-utils-4.15.1-2.fc41.x86_64 sqlite-libs-3.45.2-1.fc41.x86_64 systemd-libs-255.4-1.fc41.x86_64 tar-1.35-3.fc40.x86_64 unzip-6.0-63.fc40.x86_64 util-linux-2.40-13.fc41.x86_64 util-linux-core-2.40-13.fc41.x86_64 which-2.21-41.fc40.x86_64 xxhash-libs-0.8.2-2.fc40.x86_64 xz-5.4.6-3.fc41.x86_64 xz-libs-5.4.6-3.fc41.x86_64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.x86_64 zlib-ng-compat-2.1.6-2.fc40.x86_64 zstd-1.5.6-1.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1713225600 Wrote: /builddir/build/SRPMS/libsbml-5.20.2-8.fc41.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-x86_64-1713306730.316281/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1713306730.316281/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-ovcrsia5/libsbml/libsbml.spec) Config(child) 1 minutes 1 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/libsbml-5.20.2-8.fc41.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1713306730.316281/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1713306730.316281/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1713306730.316281/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 python3-dnf-4.19.2-1.fc41.noarch yum-4.19.2-1.fc41.noarch dnf5-5.1.17-1.fc41.x86_64 dnf5-plugins-5.1.17-1.fc41.x86_64 Finish: chroot init Start: build phase for libsbml-5.20.2-8.fc41.src.rpm Start: build setup for libsbml-5.20.2-8.fc41.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1713225600 Wrote: /builddir/build/SRPMS/libsbml-5.20.2-8.fc41.src.rpm Updating and loading repositories: Additional repo http_kojipkgs_fedorapr 100% | 25.5 KiB/s | 4.1 KiB | 00m00s Copr repository 100% | 16.0 KiB/s | 1.5 KiB | 00m00s fedora 100% | 25.9 KiB/s | 17.6 KiB | 00m01s Copr repository 100% | 12.2 MiB/s | 3.3 MiB | 00m00s Repositories loaded. 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB texlive-xkeyval noarch 11:svn63616-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 69.3 KiB texlive-xltxtra noarch 11:svn56594-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB texlive-xpatch noarch 11:svn54563-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 26.8 KiB texlive-xstring noarch 11:svn65551-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 56.1 KiB texlive-xunicode noarch 11:svn30466.0.981-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 219.6 KiB texlive-zapfding noarch 11:svn61719-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 79.5 KiB texlive-zref noarch 11:svn62977-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 816.8 KiB tk x86_64 1:8.6.14-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.6 MiB tk-devel x86_64 1:8.6.14-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 985.0 KiB tre x86_64 0.8.0-43.20140228gitc2f5d13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 75.9 KiB tre-common noarch 0.8.0-43.20140228gitc2f5d13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.0 KiB tre-devel x86_64 0.8.0-43.20140228gitc2f5d13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.7 KiB ttmkfdir x86_64 3.0.9-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 122.7 KiB tzdata noarch 2024a-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB tzdata-java noarch 2024a-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101.7 KiB urw-base35-bookman-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-c059-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-d050000l-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 84.3 KiB urw-base35-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.3 KiB urw-base35-fonts-common noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.4 KiB urw-base35-gothic-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB urw-base35-nimbus-mono-ps-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB urw-base35-nimbus-roman-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-nimbus-sans-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB urw-base35-p052-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB urw-base35-standard-symbols-ps-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64.9 KiB urw-base35-z003-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 390.8 KiB vim-filesystem noarch 2:9.1.309-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.0 B xdg-utils noarch 1.2.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 346.3 KiB xml-common noarch 0.6.3-63.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB xorg-x11-fonts-Type1 noarch 7.5-38.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 863.3 KiB xorg-x11-proto-devel noarch 2024.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB xpdf-libs x86_64 1:4.05-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB xz-devel x86_64 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 255.8 KiB zziplib x86_64 0.13.72-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 232.7 KiB Transaction Summary: Installing: 737 packages Total size of inbound packages is 532 MiB. Need to download 532 MiB. After this operation 1 GiB will be used (install 1 GiB, remove 0 B). [ 1/737] R-devel-0:4.3.3-1.fc41.x86_64 100% | 34.2 KiB/s | 10.1 KiB | 00m00s [ 2/737] R-core-devel-0:4.3.3-1.fc41.x 100% | 227.9 KiB/s | 85.7 KiB | 00m00s [ 3/737] bzip2-devel-0:1.0.8-18.fc40.x 100% | 474.5 KiB/s | 213.5 KiB | 00m00s [ 4/737] check-devel-0:0.15.2-12.fc40. 100% | 214.9 KiB/s | 33.7 KiB | 00m00s [ 5/737] expat-devel-0:2.6.2-1.fc41.x8 100% | 382.3 KiB/s | 53.9 KiB | 00m00s [ 6/737] hostname-0:3.23-12.fc40.x86_6 100% | 279.4 KiB/s | 27.7 KiB | 00m00s [ 7/737] libxml2-devel-0:2.12.6-1.fc41 100% | 1.6 MiB/s | 495.1 KiB | 00m00s [ 8/737] minizip-ng-compat-devel-0:3.0 100% | 130.1 KiB/s | 26.5 KiB | 00m00s [ 9/737] perl-ExtUtils-Embed-0:1.35-50 100% | 166.3 KiB/s | 18.1 KiB | 00m00s [ 10/737] perl-ExtUtils-MakeMaker-2:7.7 100% | 1.0 MiB/s | 281.1 KiB | 00m00s [ 11/737] perl-Test-Simple-3:1.302198-3 100% | 998.1 KiB/s | 510.0 KiB | 00m01s [ 12/737] perl-Test-0:1.31-506.fc40.noa 100% | 491.4 KiB/s | 29.0 KiB | 00m00s [ 13/737] gcc-c++-0:14.0.1-0.15.fc41.x8 100% | 8.2 MiB/s | 14.1 MiB | 00m02s [ 14/737] perl-generators-0:1.16-5.fc40 100% | 211.4 KiB/s | 16.5 KiB | 00m00s [ 15/737] python3-devel-0:3.12.3-1.fc41 100% | 667.1 KiB/s | 274.8 KiB | 00m00s [ 16/737] ruby-devel-0:3.3.0-5.fc41.x86 100% | 664.9 KiB/s | 289.9 KiB | 00m00s [ 17/737] perl-devel-4:5.38.2-506.fc40. 100% | 739.3 KiB/s | 741.6 KiB | 00m01s [ 18/737] texlive-collection-latexrecom 100% | 104.0 KiB/s | 10.7 KiB | 00m00s [ 19/737] zlib-ng-compat-devel-0:2.1.6- 100% | 296.0 KiB/s | 36.1 KiB | 00m00s [ 20/737] texlive-anysize-11:svn15878.0 100% | 118.7 KiB/s | 11.2 KiB | 00m00s [ 21/737] texlive-attachfile2-11:svn579 100% | 821.8 KiB/s | 447.1 KiB | 00m01s [ 22/737] swig-0:4.2.1-3.fc41.x86_64 100% | 677.5 KiB/s | 1.5 MiB | 00m02s [ 23/737] texlive-beamer-11:svn65984-71 100% | 724.6 KiB/s | 205.1 KiB | 00m00s [ 24/737] texlive-booktabs-11:svn53402- 100% | 158.9 KiB/s | 16.4 KiB | 00m00s [ 25/737] texlive-breqn-11:svn60881-71. 100% | 542.8 KiB/s | 41.3 KiB | 00m00s [ 26/737] texlive-base-11:20230311-84.f 100% | 1.4 MiB/s | 2.6 MiB | 00m02s [ 27/737] texlive-caption-11:svn66580-7 100% | 740.2 KiB/s | 79.9 KiB | 00m00s [ 28/737] texlive-cite-11:svn36428.5.5- 100% | 397.6 KiB/s | 29.8 KiB | 00m00s [ 29/737] texlive-cmap-11:svn57640-71.f 100% | 268.3 KiB/s | 20.1 KiB | 00m00s [ 30/737] texlive-collection-latex-11:s 100% | 127.1 KiB/s | 10.4 KiB | 00m00s [ 31/737] texlive-crop-11:svn55424-71.f 100% | 202.5 KiB/s | 17.4 KiB | 00m00s [ 32/737] texlive-ctable-11:svn38672-71 100% | 222.0 KiB/s | 16.4 KiB | 00m00s [ 33/737] texlive-eso-pic-11:svn56658-7 100% | 244.1 KiB/s | 17.8 KiB | 00m00s [ 34/737] texlive-etoolbox-11:svn56554- 100% | 307.3 KiB/s | 24.3 KiB | 00m00s [ 35/737] texlive-euenc-11:svn19795.0.1 100% | 259.1 KiB/s | 20.7 KiB | 00m00s [ 36/737] texlive-euler-11:svn42428-71. 100% | 196.9 KiB/s | 16.1 KiB | 00m00s [ 37/737] texlive-everyshi-11:svn57001- 100% | 659.1 KiB/s | 145.7 KiB | 00m00s [ 38/737] texlive-extsizes-11:svn17263. 100% | 276.8 KiB/s | 25.7 KiB | 00m00s [ 39/737] texlive-everysel-11:svn57489- 100% | 1.1 MiB/s | 447.1 KiB | 00m00s [ 40/737] texlive-fancybox-11:svn18304. 100% | 228.5 KiB/s | 21.5 KiB | 00m00s [ 41/737] texlive-fancyref-11:svn15878. 100% | 190.0 KiB/s | 17.7 KiB | 00m00s [ 42/737] texlive-fancyvrb-11:svn65585- 100% | 343.5 KiB/s | 25.1 KiB | 00m00s [ 43/737] texlive-filehook-11:svn64822- 100% | 297.4 KiB/s | 21.4 KiB | 00m00s [ 44/737] texlive-float-11:svn15878.1.3 100% | 216.9 KiB/s | 15.4 KiB | 00m00s [ 45/737] texlive-fontspec-11:svn63386- 100% | 610.4 KiB/s | 43.3 KiB | 00m00s [ 46/737] texlive-footnotehyper-11:svn6 100% | 276.2 KiB/s | 19.1 KiB | 00m00s [ 47/737] texlive-fp-11:svn49719-71.fc4 100% | 500.7 KiB/s | 34.5 KiB | 00m00s [ 48/737] texlive-grffile-11:svn52756-7 100% | 906.2 KiB/s | 358.8 KiB | 00m00s [ 49/737] texlive-hologo-11:svn61719-71 100% | 1.4 MiB/s | 585.1 KiB | 00m00s [ 50/737] texlive-index-11:svn24099.4.1 100% | 284.4 KiB/s | 21.3 KiB | 00m00s [ 51/737] texlive-jknapltx-11:svn19440. 100% | 328.2 KiB/s | 25.6 KiB | 00m00s [ 52/737] texlive-infwarerr-11:svn53023 100% | 1.2 MiB/s | 293.7 KiB | 00m00s [ 53/737] texlive-l3experimental-11:svn 100% | 516.9 KiB/s | 41.9 KiB | 00m00s [ 54/737] texlive-latexbug-11:svn63596- 100% | 1.1 MiB/s | 236.6 KiB | 00m00s [ 55/737] texlive-lineno-11:svn65586-71 100% | 845.0 KiB/s | 74.4 KiB | 00m00s [ 56/737] texlive-listings-11:svn66222- 100% | 910.3 KiB/s | 165.7 KiB | 00m00s [ 57/737] texlive-lwarp-11:svn66259-84. 100% | 1.3 MiB/s | 3.4 MiB | 00m03s [ 58/737] texlive-mathspec-11:svn42773- 100% | 306.7 KiB/s | 22.7 KiB | 00m00s [ 59/737] texlive-mathtools-11:svn63767 100% | 364.1 KiB/s | 36.4 KiB | 00m00s [ 60/737] texlive-mdwtools-11:svn15878. 100% | 254.4 KiB/s | 34.3 KiB | 00m00s [ 61/737] texlive-memoir-11:svn65040-71 100% | 635.3 KiB/s | 92.8 KiB | 00m00s [ 62/737] texlive-metalogo-11:svn18611. 100% | 201.2 KiB/s | 14.9 KiB | 00m00s [ 63/737] texlive-microtype-11:svn66587 100% | 493.2 KiB/s | 75.5 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texlive-underscore-11:svn1826 100% | 258.3 KiB/s | 17.3 KiB | 00m00s [ 90/737] texlive-xcolor-11:svn63563-71 100% | 402.1 KiB/s | 31.0 KiB | 00m00s [ 91/737] texlive-unicode-math-11:svn61 100% | 573.5 KiB/s | 61.9 KiB | 00m00s [ 92/737] texlive-xkeyval-11:svn63616-7 100% | 343.0 KiB/s | 25.7 KiB | 00m00s [ 93/737] texlive-xltxtra-11:svn56594-7 100% | 204.8 KiB/s | 15.4 KiB | 00m00s [ 94/737] texlive-xunicode-11:svn30466. 100% | 535.1 KiB/s | 42.8 KiB | 00m00s [ 95/737] texlive-ae-11:svn15878.1.4-71 100% | 731.0 KiB/s | 95.0 KiB | 00m00s [ 96/737] texlive-amsmath-11:svn63514-7 100% | 564.6 KiB/s | 45.2 KiB | 00m00s [ 97/737] texlive-atbegshi-11:svn53051- 100% | 1.6 MiB/s | 407.3 KiB | 00m00s [ 98/737] texlive-amscls-11:svn55378-71 100% | 1.8 MiB/s | 1.1 MiB | 00m01s [ 99/737] texlive-atveryend-11:svn53108 100% | 1.6 MiB/s | 383.8 KiB | 00m00s [100/737] texlive-babel-english-11:svn4 100% | 291.5 KiB/s | 19.2 KiB | 00m00s [101/737] texlive-auxhook-11:svn53173-7 100% | 1.7 MiB/s | 293.4 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texlive-amsmath-11 100% | 262.4 MiB/s | 268.7 KiB | 00m00s [478/739] Installing texlive-pdftexcmds 100% | 207.8 MiB/s | 425.6 KiB | 00m00s [479/739] Installing texlive-kvoptions- 100% | 269.3 MiB/s | 551.6 KiB | 00m00s [480/739] Installing texlive-ltxcmds-11 100% | 415.6 MiB/s | 425.5 KiB | 00m00s [481/739] Installing texlive-url-11:svn 100% | 21.6 MiB/s | 22.1 KiB | 00m00s [482/739] Installing texlive-atbegshi-1 100% | 144.9 MiB/s | 445.1 KiB | 00m00s [483/739] Installing texlive-amsfonts-1 100% | 151.0 MiB/s | 6.0 MiB | 00m00s [484/739] Installing texlive-booktabs-1 100% | 18.6 MiB/s | 19.0 KiB | 00m00s [485/739] Installing texlive-infwarerr- 100% | 300.3 MiB/s | 307.5 KiB | 00m00s [486/739] Installing texlive-atveryend- 100% | 133.8 MiB/s | 411.2 KiB | 00m00s [487/739] Installing texlive-babel-11:s 100% | 28.5 MiB/s | 2.2 MiB | 00m00s [488/739] Installing texlive-etex-pkg-1 100% | 0.0 B/s | 19.0 KiB | 00m00s [489/739] Installing texlive-etoolbox-1 100% | 66.1 MiB/s | 67.7 KiB | 00m00s [490/739] Installing texlive-auxhook-11 100% | 296.1 MiB/s | 303.2 KiB | 00m00s [491/739] Installing texlive-etexcmds-1 100% | 314.7 MiB/s | 322.3 KiB | 00m00s [492/739] Installing texlive-latex-font 100% | 40.4 MiB/s | 124.2 KiB | 00m00s [493/739] Installing texlive-pdfescape- 100% | 184.2 MiB/s | 377.2 KiB | 00m00s [494/739] Installing texlive-fp-11:svn4 100% | 62.4 MiB/s | 127.9 KiB | 00m00s [495/739] Installing texlive-hologo-11: 100% | 325.3 MiB/s | 666.1 KiB | 00m00s [496/739] Installing texlive-ragged2e-1 100% | 358.1 MiB/s | 733.3 KiB | 00m00s [497/739] Installing texlive-setspace-1 100% | 0.0 B/s | 22.4 KiB | 00m00s [498/739] Installing texlive-bigintcalc 100% | 252.4 MiB/s | 516.8 KiB | 00m00s [499/739] Installing texlive-graphics-c 100% | 3.8 MiB/s | 3.9 KiB | 00m00s [500/739] Installing texlive-graphics-1 100% | 62.8 MiB/s | 128.7 KiB | 00m00s [501/739] Installing texlive-tools-11:s 100% | 100.5 MiB/s | 411.7 KiB | 00m00s [502/739] Installing texlive-xkeyval-11 100% | 69.9 MiB/s | 71.6 KiB | 00m00s [503/739] Installing texlive-geometry-1 100% | 49.1 MiB/s | 50.2 KiB | 00m00s [504/739] Installing texlive-caption-11 100% | 297.1 MiB/s | 912.6 KiB | 00m00s [505/739] Installing texlive-colortbl-1 100% | 0.0 B/s | 21.8 KiB | 00m00s [506/739] Installing texlive-hycolor-11 100% | 403.5 MiB/s | 413.1 KiB | 00m00s [507/739] Installing texlive-intcalc-11 100% | 230.9 MiB/s | 472.8 KiB | 00m00s [508/739] Installing texlive-kvsetkeys- 100% | 209.4 MiB/s | 428.8 KiB | 00m00s [509/739] Installing texlive-l3backend- 100% | 369.0 MiB/s | 1.1 MiB | 00m00s [510/739] Installing texlive-letltxmacr 100% | 305.3 MiB/s | 312.6 KiB | 00m00s [511/739] Installing texlive-natbib-11: 100% | 131.1 MiB/s | 134.2 KiB | 00m00s [512/739] Installing texlive-uniquecoun 100% | 153.1 MiB/s | 313.5 KiB | 00m00s [513/739] Installing texlive-hypdoc-11: 100% | 351.1 MiB/s | 359.5 KiB | 00m00s [514/739] Installing texlive-footmisc-1 100% | 21.4 MiB/s | 65.6 KiB | 00m00s [515/739] Installing texlive-lm-11:svn6 100% | 304.2 MiB/s | 39.5 MiB | 00m00s [516/739] Installing texlive-multido-11 100% | 19.2 MiB/s | 19.6 KiB | 00m00s [517/739] Installing texlive-rerunfilec 100% | 177.4 MiB/s | 363.3 KiB | 00m00s [518/739] Installing texlive-subfig-11: 100% | 36.6 MiB/s | 37.5 KiB | 00m00s [519/739] Installing texlive-carlisle-1 100% | 32.0 MiB/s | 32.8 KiB | 00m00s [520/739] Installing texlive-translator 100% | 84.6 MiB/s | 519.8 KiB | 00m00s [521/739] Installing texlive-sauerj-11: 100% | 27.9 MiB/s | 28.6 KiB | 00m00s [522/739] Installing texlive-csquotes-1 100% | 110.6 MiB/s | 113.3 KiB | 00m00s [523/739] Installing texlive-bitset-11: 100% | 324.0 MiB/s | 663.5 KiB | 00m00s [524/739] Installing texlive-catchfile- 100% | 312.5 MiB/s | 320.0 KiB | 00m00s [525/739] Installing texlive-ifplatform 100% | 0.0 B/s | 13.5 KiB | 00m00s [526/739] Installing texlive-memoir-11: 100% | 236.2 MiB/s | 483.6 KiB | 00m00s [527/739] Installing texlive-babelbib-1 100% | 192.2 MiB/s | 787.2 KiB | 00m00s [528/739] Installing texlive-euenc-11:s 100% | 41.2 MiB/s | 42.2 KiB | 00m00s [529/739] Installing texlive-euler-11:s 100% | 0.0 B/s | 21.4 KiB | 00m00s [530/739] Installing texlive-everyshi-1 100% | 155.2 MiB/s | 158.9 KiB | 00m00s [531/739] Installing texlive-fancybox-1 100% | 40.5 MiB/s | 41.5 KiB | 00m00s [532/739] Installing texlive-float-11:s 100% | 15.8 MiB/s | 16.2 KiB | 00m00s [533/739] Installing texlive-grffile-11 100% | 185.9 MiB/s | 380.7 KiB | 00m00s [534/739] Installing texlive-index-11:s 100% | 60.7 MiB/s | 62.1 KiB | 00m00s [535/739] Installing texlive-pdflscape- 100% | 168.3 MiB/s | 344.8 KiB | 00m00s [536/739] Installing texlive-ucharcat-1 100% | 0.0 B/s | 10.9 KiB | 00m00s [537/739] Installing texlive-underscore 100% | 19.6 MiB/s | 20.1 KiB | 00m00s [538/739] Installing texlive-bookmark-1 100% | 279.4 MiB/s | 572.2 KiB | 00m00s [539/739] Installing texlive-fancyhdr-1 100% | 31.9 MiB/s | 32.7 KiB | 00m00s [540/739] Installing texlive-firstaid-1 100% | 145.9 MiB/s | 298.8 KiB | 00m00s [541/739] Installing texlive-gettitlest 100% | 332.2 MiB/s | 340.1 KiB | 00m00s [542/739] Installing texlive-grfext-11: 100% | 321.3 MiB/s | 329.1 KiB | 00m00s [543/739] Installing texlive-kvdefineke 100% | 308.1 MiB/s | 315.5 KiB | 00m00s [544/739] Installing texlive-latexconfi 100% | 0.0 B/s | 9.8 KiB | 00m00s [545/739] Installing texlive-refcount-1 100% | 341.0 MiB/s | 349.2 KiB | 00m00s [546/739] Installing texlive-stringenc- 100% | 263.5 MiB/s | 1.1 MiB | 00m00s [547/739] Installing texlive-glyphlist- 100% | 89.0 MiB/s | 91.1 KiB | 00m00s [548/739] Installing texlive-lua-alt-ge 100% | 0.0 B/s | 4.3 KiB | 00m00s [549/739] Installing texlive-modes-11:s 100% | 191.4 MiB/s | 391.9 KiB | 00m00s [550/739] Installing texlive-palatino-1 100% | 86.2 MiB/s | 1.1 MiB | 00m00s [551/739] Installing texlive-zapfding-1 100% | 40.4 MiB/s | 82.7 KiB | 00m00s [552/739] Installing texlive-zref-11:sv 100% | 267.6 MiB/s | 822.0 KiB | 00m00s [553/739] Installing texlive-marvosym-1 100% | 91.9 MiB/s | 188.3 KiB | 00m00s [554/739] Installing texlive-paralist-1 100% | 0.0 B/s | 24.1 KiB | 00m00s [555/739] Installing texlive-placeins-1 100% | 0.0 B/s | 5.4 KiB | 00m00s [556/739] Installing texlive-metafont-1 100% | 155.2 MiB/s | 794.6 KiB | 00m00s [557/739] Installing texlive-auto-pst-p 100% | 0.0 B/s | 15.6 KiB | 00m00s [558/739] Installing texlive-breakurl-1 100% | 0.0 B/s | 17.9 KiB | 00m00s [559/739] Installing texlive-fancyref-1 100% | 0.0 B/s | 28.6 KiB | 00m00s [560/739] Installing texlive-mathtools- 100% | 128.7 MiB/s | 131.8 KiB | 00m00s [561/739] Installing texlive-ltabptch-1 100% | 0.0 B/s | 21.6 KiB | 00m00s [562/739] Installing texlive-crop-11:sv 100% | 26.8 MiB/s | 27.4 KiB | 00m00s [563/739] Installing texlive-microtype- 100% | 151.6 MiB/s | 465.6 KiB | 00m00s [564/739] Installing texlive-pdfmanagem 100% | 502.7 MiB/s | 11.6 MiB | 00m00s [565/739] Installing texlive-psfrag-11: 100% | 12.7 MiB/s | 13.0 KiB | 00m00s [566/739] Installing texlive-logreq-11: 100% | 26.6 MiB/s | 27.2 KiB | 00m00s [567/739] Installing texlive-dvips-11:s 100% | 175.8 MiB/s | 1.6 MiB | 00m00s [568/739] Installing texlive-hopatch-11 100% | 339.1 MiB/s | 347.2 KiB | 00m00s [569/739] Installing texlive-thumbpdf-1 100% | 48.3 MiB/s | 98.9 KiB | 00m00s [570/739] Installing texlive-anysize-11 100% | 0.0 B/s | 4.1 KiB | 00m00s [571/739] Installing texlive-cite-11:sv 100% | 61.7 MiB/s | 63.2 KiB | 00m00s [572/739] Installing texlive-cmap-11:sv 100% | 37.9 MiB/s | 38.8 KiB | 00m00s [573/739] Installing texlive-everysel-1 100% | 224.3 MiB/s | 459.4 KiB | 00m00s [574/739] Installing texlive-footnotehy 100% | 30.5 MiB/s | 31.3 KiB | 00m00s [575/739] Installing texlive-latexbug-1 100% | 92.4 MiB/s | 283.8 KiB | 00m00s [576/739] Installing texlive-lwarp-11:s 100% | 149.0 MiB/s | 4.9 MiB | 00m00s [577/739] Installing texlive-mdwtools-1 100% | 111.5 MiB/s | 114.2 KiB | 00m00s [578/739] Installing texlive-newfloat-1 100% | 156.0 MiB/s | 159.7 KiB | 00m00s [579/739] Installing texlive-ntgclass-1 100% | 278.5 MiB/s | 285.2 KiB | 00m00s [580/739] Installing texlive-parskip-11 100% | 16.3 MiB/s | 16.7 KiB | 00m00s [581/739] Installing texlive-pdfcolfoot 100% | 329.2 MiB/s | 337.1 KiB | 00m00s [582/739] Installing texlive-rcs-11:svn 100% | 46.6 MiB/s | 47.7 KiB | 00m00s [583/739] Installing texlive-sansmath-1 100% | 0.0 B/s | 9.3 KiB | 00m00s [584/739] Installing texlive-section-11 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [585/739] Installing texlive-sepnum-11: 100% | 15.4 MiB/s | 15.8 KiB | 00m00s [586/739] Installing texlive-textcase-1 100% | 11.7 MiB/s | 12.0 KiB | 00m00s [587/739] Installing texlive-babel-engl 100% | 45.4 MiB/s | 46.5 KiB | 00m00s [588/739] Installing texlive-fix2col-11 100% | 17.0 MiB/s | 17.4 KiB | 00m00s [589/739] Installing texlive-latex-lab- 100% | 385.1 MiB/s | 2.3 MiB | 00m00s [590/739] Installing texlive-mfnfss-11: 100% | 24.2 MiB/s | 24.7 KiB | 00m00s [591/739] Installing texlive-mptopdf-11 100% | 75.0 MiB/s | 153.5 KiB | 00m00s [592/739] Installing texlive-pagesel-11 100% | 347.7 MiB/s | 356.1 KiB | 00m00s [593/739] Installing texlive-pslatex-11 100% | 28.5 MiB/s | 29.2 KiB | 00m00s [594/739] Installing texlive-pspicture- 100% | 14.4 MiB/s | 14.7 KiB | 00m00s [595/739] Installing texlive-bibtex-11: 100% | 192.1 MiB/s | 787.0 KiB | 00m00s [596/739] Installing texlive-colorprofi 100% | 89.2 MiB/s | 274.1 KiB | 00m00s [597/739] Installing texlive-ec-11:svn2 100% | 53.3 MiB/s | 2.7 MiB | 00m00s [598/739] Installing texlive-enctex-11: 100% | 61.0 MiB/s | 187.3 KiB | 00m00s [599/739] Installing texlive-hyphenex-1 100% | 0.0 B/s | 26.1 KiB | 00m00s [600/739] Installing texlive-knuth-loca 100% | 36.8 MiB/s | 113.1 KiB | 00m00s [601/739] Installing texlive-luahbtex-1 100% | 300.1 MiB/s | 6.3 MiB | 00m00s [602/739] Installing texlive-makeindex- 100% | 125.0 MiB/s | 512.1 KiB | 00m00s [603/739] Installing texlive-mflogo-11: 100% | 13.3 MiB/s | 13.6 KiB | 00m00s [604/739] Installing texlive-mfware-11: 100% | 70.7 MiB/s | 217.1 KiB | 00m00s [605/739] Installing texlive-tex-11:svn 100% | 124.7 MiB/s | 382.9 KiB | 00m00s [606/739] Installing texlive-texlive-en 100% | 424.1 MiB/s | 5.9 MiB | 00m00s [607/739] Installing texlive-texlive-ms 100% | 351.6 MiB/s | 1.4 MiB | 00m00s [608/739] Installing texlive-xdvi-11:sv 100% | 181.0 MiB/s | 741.4 KiB | 00m00s [609/739] Installing texlive-pdfcolmk-1 100% | 20.2 MiB/s | 20.7 KiB | 00m00s [610/739] Installing texlive-xcolor-11: 100% | 78.8 MiB/s | 80.7 KiB | 00m00s [611/739] Installing texlive-eso-pic-11 100% | 27.9 MiB/s | 28.6 KiB | 00m00s [612/739] Installing texlive-lm-math-11 100% | 239.9 MiB/s | 736.9 KiB | 00m00s [613/739] Installing texlive-avantgar-1 100% | 112.9 MiB/s | 1.2 MiB | 00m00s [614/739] Installing texlive-bookman-11 100% | 94.9 MiB/s | 1.2 MiB | 00m00s [615/739] Installing texlive-charter-11 100% | 67.5 MiB/s | 415.0 KiB | 00m00s [616/739] Installing texlive-courier-11 100% | 101.7 MiB/s | 937.1 KiB | 00m00s [617/739] Installing texlive-helvetic-1 100% | 107.5 MiB/s | 1.8 MiB | 00m00s [618/739] Installing texlive-symbol-11: 100% | 26.7 MiB/s | 82.0 KiB | 00m00s [619/739] Installing texlive-times-11:s 100% | 83.2 MiB/s | 1.0 MiB | 00m00s [620/739] Installing texlive-utopia-11: 100% | 134.6 MiB/s | 551.4 KiB | 00m00s [621/739] Installing texlive-luabidi-11 100% | 26.1 MiB/s | 26.8 KiB | 00m00s [622/739] Installing texlive-makecmds-1 100% | 11.6 MiB/s | 11.9 KiB | 00m00s [623/739] Installing texlive-dehyph-11: 100% | 117.8 MiB/s | 241.2 KiB | 00m00s [624/739] Installing texlive-pdftex-11: 100% | 209.9 MiB/s | 4.6 MiB | 00m00s [625/739] Installing texlive-parallel-1 100% | 22.8 MiB/s | 23.3 KiB | 00m00s [626/739] Installing texlive-pdfcol-11: 100% | 338.7 MiB/s | 346.8 KiB | 00m00s [627/739] Installing texlive-fpl-11:svn 100% | 212.0 MiB/s | 651.2 KiB | 00m00s [628/739] Installing texlive-mathpazo-1 100% | 57.0 MiB/s | 116.7 KiB | 00m00s [629/739] Installing texlive-psnfss-11: 100% | 23.3 MiB/s | 119.5 KiB | 00m00s [630/739] Installing texlive-ctablestac 100% | 20.4 MiB/s | 20.9 KiB | 00m00s [631/739] Installing texlive-luatexbase 100% | 14.7 MiB/s | 15.1 KiB | 00m00s [632/739] Installing texlive-lua-uni-al 100% | 128.2 MiB/s | 131.3 KiB | 00m00s [633/739] Installing texlive-lualibs-11 100% | 188.4 MiB/s | 771.6 KiB | 00m00s [634/739] Installing texlive-luaotfload 100% | 357.3 MiB/s | 8.2 MiB | 00m00s [635/739] Installing texlive-beton-11:s 100% | 0.0 B/s | 12.5 KiB | 00m00s [636/739] Installing texlive-finstrut-1 100% | 0.0 B/s | 26.4 KiB | 00m00s [637/739] Installing texlive-lineno-11: 100% | 233.2 MiB/s | 238.8 KiB | 00m00s [638/739] Installing texlive-alphalph-1 100% | 368.3 MiB/s | 377.1 KiB | 00m00s [639/739] Installing texlive-enumitem-1 100% | 58.7 MiB/s | 60.1 KiB | 00m00s [640/739] Installing texlive-marginnote 100% | 0.0 B/s | 23.3 KiB | 00m00s [641/739] Installing texlive-mparhack-1 100% | 0.0 B/s | 21.1 KiB | 00m00s [642/739] Installing texlive-picture-11 100% | 317.1 MiB/s | 324.8 KiB | 00m00s [643/739] Installing texlive-rsfs-11:sv 100% | 49.9 MiB/s | 102.2 KiB | 00m00s [644/739] Installing texlive-hobsub-11: 100% | 80.0 MiB/s | 81.9 KiB | 00m00s [645/739] Installing texlive-hyperref-1 100% | 150.3 MiB/s | 769.4 KiB | 00m00s [646/739] Installing texlive-attachfile 100% | 161.1 MiB/s | 494.8 KiB | 00m00s [647/739] Installing texlive-attachfile 100% | 32.4 MiB/s | 33.2 KiB | 00m00s [648/739] Installing texlive-kastrup-11 100% | 0.0 B/s | 4.2 KiB | 00m00s [649/739] Installing texlive-transparen 100% | 296.6 MiB/s | 303.7 KiB | 00m00s [650/739] Installing texlive-ctable-11: 100% | 20.9 MiB/s | 21.4 KiB | 00m00s [651/739] Installing texlive-changepage 100% | 27.6 MiB/s | 28.2 KiB | 00m00s [652/739] Installing texlive-titlesec-1 100% | 96.6 MiB/s | 98.9 KiB | 00m00s [653/739] Installing texlive-ifmtarg-11 100% | 9.7 MiB/s | 9.9 KiB | 00m00s [654/739] Installing texlive-xetexconfi 100% | 0.0 B/s | 776.0 B | 00m00s [655/739] Installing texlive-varwidth-1 100% | 0.0 B/s | 20.3 KiB | 00m00s [656/739] Installing texlive-fileconten 100% | 2.1 MiB/s | 13.0 KiB | 00m00s [657/739] Installing texlive-pst-math-1 100% | 23.1 MiB/s | 23.7 KiB | 00m00s [658/739] Installing texlive-notoccite- 100% | 0.0 B/s | 3.0 KiB | 00m00s [659/739] Installing texlive-xstring-11 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [660/739] Installing texlive-l3packages 100% | 129.6 MiB/s | 265.5 KiB | 00m00s [661/739] Installing texlive-fontspec-1 100% | 322.8 MiB/s | 330.6 KiB | 00m00s [662/739] Installing texlive-xunicode-1 100% | 107.6 MiB/s | 220.3 KiB | 00m00s [663/739] Installing texlive-tipa-11:sv 100% | 210.7 MiB/s | 3.8 MiB | 00m00s [664/739] Installing texlive-currfile-1 100% | 34.1 MiB/s | 35.0 KiB | 00m00s [665/739] Installing texlive-filehook-1 100% | 27.9 MiB/s | 57.2 KiB | 00m00s [666/739] Installing texlive-pgf-11:svn 100% | 101.6 MiB/s | 4.9 MiB | 00m00s [667/739] Installing texlive-ms-11:svn5 100% | 18.8 MiB/s | 19.3 KiB | 00m00s [668/739] Installing texlive-koma-scrip 100% | 382.0 MiB/s | 9.9 MiB | 00m00s [669/739] Installing texlive-listings-1 100% | 284.6 MiB/s | 582.9 KiB | 00m00s [670/739] Installing texlive-algorithms 100% | 19.1 MiB/s | 39.1 KiB | 00m00s [671/739] Installing texlive-cm-super-1 100% | 409.7 MiB/s | 65.1 MiB | 00m00s [672/739] Installing texlive-showexpl-1 100% | 22.0 MiB/s | 22.6 KiB | 00m00s [673/739] Installing texlive-polyglossi 100% | 57.4 MiB/s | 764.6 KiB | 00m00s [674/739] Installing texlive-bidi-11:sv 100% | 119.2 MiB/s | 1.2 MiB | 00m00s [675/739] Installing texlive-xifthen-11 100% | 14.8 MiB/s | 15.2 KiB | 00m00s [676/739] Installing texlive-bera-11:sv 100% | 110.4 MiB/s | 791.2 KiB | 00m00s [677/739] Installing texlive-latex-11:s 100% | 447.6 MiB/s | 40.3 MiB | 00m00s [678/739] Installing texlive-xpatch-11: 100% | 26.9 MiB/s | 27.5 KiB | 00m00s [679/739] Installing texlive-biblatex-1 100% | 198.4 MiB/s | 2.2 MiB | 00m00s [680/739] Installing texlive-l3kernel-1 100% 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Finish: build setup for libsbml-5.20.2-8.fc41.src.rpm Start: rpmbuild libsbml-5.20.2-8.fc41.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1713225600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.PKdWur + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf libsbml-5.20.2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/libsbml-5.20.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd libsbml-5.20.2 + rm -rf /builddir/build/BUILD/libsbml-5.20.2-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/libsbml-5.20.2-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Use-system-minizip-cmake.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0002-Fix-install-libpaths.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0003-Fix-jsfile-globs.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0004-Fix-compatibility-with-libxml2-2.12.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/370.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find . -type f -name '*.py' -exec /usr/bin/python3 /usr/lib/rpm/redhat/pathfix.py -pn -i /usr/bin/python3 '{}' ';' ./dev/utilities/count-lines-of-code/process_count.py: updating ./dev/utilities/errorTable/writeErrorTable.py: updating ./dev/utilities/sboTree/sbo2cpp.py: updating ./docs/src/filters/doc-filter-c.py: updating ./docs/src/filters/doc-filter-csharp.py: updating ./docs/src/filters/doc-filter-python.py: updating ./docs/src/python-substitutions/ASTNodeList.py: no change ./docs/src/python-substitutions/CVTermList.py: no change ./docs/src/python-substitutions/CompPkgNamespaces.py: no change 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./docs/src/utilities/generate-cplusplus-class-names.py: updating ./docs/src/utilities/generate-extensions-summary.py: updating ./docs/src/utilities/generate-pkg-stylesheet.py: updating ./docs/src/utilities/pythondocpreprocessor.py: updating ./docs/src/utilities/split-documentation-classes.py: no change ./examples/python/addCVTerms.py: updating ./examples/python/addCustomValidator.py: updating ./examples/python/addModelHistory.py: updating ./examples/python/add_function_definition.py: updating ./examples/python/addingEvidenceCodes_1.py: updating ./examples/python/addingEvidenceCodes_2.py: updating ./examples/python/appendAnnotation.py: updating ./examples/python/append_to_note.py: updating ./examples/python/arrays/CreateArrays1.py: no change ./examples/python/arrays/CreateArrays2.py: no change ./examples/python/arrays/flattenArrays.py: updating ./examples/python/callExternalValidator.py: updating ./examples/python/comp/flattenModel.py: updating ./examples/python/convertSBML.py: updating ./examples/python/createExampleSBML.py: updating ./examples/python/createSimpleModel.py: updating ./examples/python/distrib/createNormalExample.py: updating ./examples/python/distrib/createStatisticsExample .py: updating ./examples/python/dyn/dyn_example1.py: no change ./examples/python/dyn/dyn_example2.py: no change ./examples/python/echoSBML.py: updating ./examples/python/evaluateCustomMath.py: updating ./examples/python/fbc/convertCobraToFbc.py: updating ./examples/python/fbc/convertFbcToCobra.py: updating ./examples/python/fbc/fbc_example1.py: updating ./examples/python/fbc/print_gene_product_association.py: updating ./examples/python/getAllElementsWithNotes.py: updating ./examples/python/groups/groups_example1.py: updating ./examples/python/groups/print_groups.py: updating ./examples/python/inlineFunctionDefinitions.py: updating ./examples/python/inlineInitialAssignments.py: updating ./examples/python/layout/convertLayout.py: updating ./examples/python/layout/example1-L3.py: updating ./examples/python/layout/example1.py: updating ./examples/python/multi/multi_example1.py: no change ./examples/python/multi/multi_example2.py: no change ./examples/python/multi/multi_example3.py: no change ./examples/python/multi/printMulti.py: no change ./examples/python/printAnnotation.py: updating ./examples/python/printMath.py: updating ./examples/python/printNotes.py: updating ./examples/python/printRegisteredPackages.py: updating ./examples/python/printSBML.py: updating ./examples/python/printUnits.py: updating ./examples/python/printsupported.py: updating ./examples/python/promoteParameters.py: updating ./examples/python/qual/qual_example1.py: updating ./examples/python/readSBML.py: updating ./examples/python/renameSId.py: no change ./examples/python/render/addRenderInformation.py: no change ./examples/python/render/printRenderInformation.py: no change ./examples/python/render/removeRenderInformation.py: no change ./examples/python/replaceOneFD.py: updating ./examples/python/setIdFromNames.py: updating ./examples/python/setNamesFromIds.py: updating ./examples/python/stringInput.py: updating ./examples/python/stripPackage.py: updating ./examples/python/translateMath.py: updating ./examples/python/unsetAnnotation.py: updating ./examples/python/unsetNotes.py: updating ./examples/python/validateSBML.py: updating ./examples/python/validateSBMLWithCallback.py: updating ./src/bindings/python/doc-converter/argparse.py: no change ./src/bindings/python/doc-converter/prettytable.py: updating ./src/bindings/python/doc-converter/rewrite_pydoc.py: updating ./src/bindings/python/doc-converter/test/cases/test_args.py: updating ./src/bindings/python/doc-converter/test/cases/test_read.py: updating ./src/bindings/python/doc-converter/test/cases/test_rewrite.py: updating ./src/bindings/python/doc-converter/test/cases/test_test.py: updating ./src/bindings/python/doc-converter/test/cases/test_write.py: updating ./src/bindings/python/doc-converter/test/run.py: updating ./src/bindings/python/test/annotation/TestAnnotationCopyAndClone.py: no change ./src/bindings/python/test/annotation/TestCVTerms.py: no change ./src/bindings/python/test/annotation/TestCVTerms_newSetters.py: no change ./src/bindings/python/test/annotation/TestDate_newSetters.py: no change ./src/bindings/python/test/annotation/TestL3ModelHistory.py: no change ./src/bindings/python/test/annotation/TestModelCreator_newSetters.py: no change ./src/bindings/python/test/annotation/TestModelHistory.py: no change ./src/bindings/python/test/annotation/TestModelHistory_newSetters.py: no change ./src/bindings/python/test/annotation/TestRDFAnnotation.py: no change ./src/bindings/python/test/annotation/TestRDFAnnotation2.py: no change ./src/bindings/python/test/annotation/TestRDFAnnotationC.py: no change ./src/bindings/python/test/annotation/TestValidation.py: no change ./src/bindings/python/test/math/TestASTNode.py: no change ./src/bindings/python/test/math/TestL3FormulaParserC.py: no change ./src/bindings/python/test/math/TestMathReadFromFile1.py: no change ./src/bindings/python/test/math/TestMathReadFromFile2.py: no change ./src/bindings/python/test/math/TestReadMathML.py: no change ./src/bindings/python/test/math/TestValidASTNode.py: no change ./src/bindings/python/test/math/TestWriteMathML.py: no change ./src/bindings/python/test/sbml/TestAlgebraicRule.py: no change ./src/bindings/python/test/sbml/TestAncestor.py: no change ./src/bindings/python/test/sbml/TestAssignmentRule.py: no change ./src/bindings/python/test/sbml/TestCompartment.py: no change ./src/bindings/python/test/sbml/TestCompartmentType.py: no change ./src/bindings/python/test/sbml/TestCompartmentType_newSetters.py: no change ./src/bindings/python/test/sbml/TestCompartmentVolumeRule.py: no change ./src/bindings/python/test/sbml/TestCompartment_newSetters.py: no change ./src/bindings/python/test/sbml/TestConsistencyChecks.py: no change ./src/bindings/python/test/sbml/TestConstraint.py: no change ./src/bindings/python/test/sbml/TestConstraint_newSetters.py: no change ./src/bindings/python/test/sbml/TestCopyAndClone.py: no change ./src/bindings/python/test/sbml/TestDelay.py: no change ./src/bindings/python/test/sbml/TestEvent.py: no change ./src/bindings/python/test/sbml/TestEventAssignment.py: no change ./src/bindings/python/test/sbml/TestEventAssignment_newSetters.py: no change ./src/bindings/python/test/sbml/TestEvent_newSetters.py: no change ./src/bindings/python/test/sbml/TestFunctionDefinition.py: no change ./src/bindings/python/test/sbml/TestFunctionDefinition_newSetters.py: no change ./src/bindings/python/test/sbml/TestGetMultipleObjects.py: no change ./src/bindings/python/test/sbml/TestInitialAssignment.py: no change ./src/bindings/python/test/sbml/TestInitialAssignment_newSetters.py: no change ./src/bindings/python/test/sbml/TestInternalConsistencyChecks.py: no change ./src/bindings/python/test/sbml/TestKineticLaw.py: no change ./src/bindings/python/test/sbml/TestKineticLaw_newSetters.py: no change ./src/bindings/python/test/sbml/TestL3Compartment.py: no change ./src/bindings/python/test/sbml/TestL3Event.py: no change ./src/bindings/python/test/sbml/TestL3KineticLaw.py: no change ./src/bindings/python/test/sbml/TestL3LocalParameter.py: no change ./src/bindings/python/test/sbml/TestL3Model.py: no change ./src/bindings/python/test/sbml/TestL3Parameter.py: no change ./src/bindings/python/test/sbml/TestL3Reaction.py: no change ./src/bindings/python/test/sbml/TestL3Species.py: no change ./src/bindings/python/test/sbml/TestL3SpeciesReference.py: no change ./src/bindings/python/test/sbml/TestL3Trigger.py: no change ./src/bindings/python/test/sbml/TestL3Unit.py: no change ./src/bindings/python/test/sbml/TestListOf.py: no change ./src/bindings/python/test/sbml/TestModel.py: no change ./src/bindings/python/test/sbml/TestModel_newSetters.py: no change ./src/bindings/python/test/sbml/TestModifierSpeciesReference.py: no change ./src/bindings/python/test/sbml/TestParameter.py: no change ./src/bindings/python/test/sbml/TestParameterRule.py: no change ./src/bindings/python/test/sbml/TestParameter_newSetters.py: no change ./src/bindings/python/test/sbml/TestPriority.py: no change ./src/bindings/python/test/sbml/TestRateRule.py: no change ./src/bindings/python/test/sbml/TestReaction.py: no change ./src/bindings/python/test/sbml/TestReaction_newSetters.py: no change ./src/bindings/python/test/sbml/TestReadFromFile1.py: no change ./src/bindings/python/test/sbml/TestReadFromFile2.py: no change ./src/bindings/python/test/sbml/TestReadFromFile3.py: no change ./src/bindings/python/test/sbml/TestReadFromFile4.py: no change ./src/bindings/python/test/sbml/TestReadFromFile5.py: no change ./src/bindings/python/test/sbml/TestReadFromFile6.py: no change ./src/bindings/python/test/sbml/TestReadFromFile7.py: no change ./src/bindings/python/test/sbml/TestReadFromFile8.py: no change ./src/bindings/python/test/sbml/TestReadFromFile9.py: no change ./src/bindings/python/test/sbml/TestReadSBML.py: no change ./src/bindings/python/test/sbml/TestRequiredAttributes.py: no change ./src/bindings/python/test/sbml/TestRequiredElements.py: no change ./src/bindings/python/test/sbml/TestRule.py: no change ./src/bindings/python/test/sbml/TestRule_newSetters.py: no change ./src/bindings/python/test/sbml/TestSBMLConstructorException.py: no change ./src/bindings/python/test/sbml/TestSBMLConvert.py: no change ./src/bindings/python/test/sbml/TestSBMLConvertStrict.py: no change ./src/bindings/python/test/sbml/TestSBMLDocument.py: no change ./src/bindings/python/test/sbml/TestSBMLError.py: no change ./src/bindings/python/test/sbml/TestSBMLNamespaces.py: no change ./src/bindings/python/test/sbml/TestSBMLParentObject.py: no change ./src/bindings/python/test/sbml/TestSBase.py: no change ./src/bindings/python/test/sbml/TestSBase_newSetters.py: no change ./src/bindings/python/test/sbml/TestSpecies.py: no change ./src/bindings/python/test/sbml/TestSpeciesConcentrationRule.py: no change ./src/bindings/python/test/sbml/TestSpeciesReference.py: no change ./src/bindings/python/test/sbml/TestSpeciesReference_newSetters.py: no change ./src/bindings/python/test/sbml/TestSpeciesType.py: no change ./src/bindings/python/test/sbml/TestSpeciesType_newSetters.py: no change ./src/bindings/python/test/sbml/TestSpecies_newSetters.py: no change ./src/bindings/python/test/sbml/TestStoichiometryMath.py: no change ./src/bindings/python/test/sbml/TestSyntaxChecker.py: no change ./src/bindings/python/test/sbml/TestTrigger.py: no change ./src/bindings/python/test/sbml/TestUnit.py: no change ./src/bindings/python/test/sbml/TestUnitDefinition.py: no change ./src/bindings/python/test/sbml/TestUnitDefinition_newSetters.py: no change ./src/bindings/python/test/sbml/TestUnitKind.py: no change ./src/bindings/python/test/sbml/TestUnit_newSetters.py: no change ./src/bindings/python/test/sbml/TestWriteL3SBML.py: no change ./src/bindings/python/test/sbml/TestWriteSBML.py: no change ./src/bindings/python/test/xml/TestXMLAttributes.py: no change ./src/bindings/python/test/xml/TestXMLAttributesC.py: no change ./src/bindings/python/test/xml/TestXMLCopyAndClone.py: no change ./src/bindings/python/test/xml/TestXMLError.py: no change ./src/bindings/python/test/xml/TestXMLErrorC.py: no change ./src/bindings/python/test/xml/TestXMLNamespaces.py: no change ./src/bindings/python/test/xml/TestXMLNode.py: no change ./src/bindings/python/test/xml/TestXMLNode_newSetters.py: no change ./src/bindings/python/test/xml/TestXMLOutputStream.py: no change ./src/bindings/python/test/xml/TestXMLToken.py: no change ./src/bindings/python/test/xml/TestXMLToken_newSetters.py: no change ./src/bindings/python/test/xml/TestXMLTriple.py: no change ./src/bindings/python/test.py: updating ./src/bindings/swig/argparse.py: no change ./src/bindings/swig/libsbmlutils.py: updating ./src/bindings/swig/swigdoc.py: updating + grep -e 'This file was automatically generated by SWIG' -r -l . + xargs --no-run-if-empty rm -v + sed -r -i 's|(set\(PERL_PACKAGE_INSTALL_DIR.*/perl5)/site_perl.*\)|\1/vendor_perl)|' src/bindings/perl/CMakeLists.txt + sed -r -i 's|(set\(RUBY_PACKAGE_INSTALL_DIR.*/ruby)/site_ruby.*\)|\1/vendor_ruby)|' src/bindings/ruby/CMakeLists.txt + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.aHTbct + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsbml-5.20.2 + mkdir -p build + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ python3-config --abiflags ++ python3-config --abiflags + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -B build -DENABLE_LAYOUT=ON -DENABLE_QUAL=ON -DENABLE_COMP=ON -DENABLE_FBC=ON -DENABLE_RENDER=ON -DENABLE_GROUPS=ON -DENABLE_MULTI=ON -DCSHARP_COMPILER:FILEPATH=/usr/bin/mcs -DWITH_PYTHON:BOOL=ON -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.12 -DPYTHON_LIBRARY:FILEPATH=/usr/lib64/libpython3.12.so -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_USE_DYNAMIC_LOOKUP:BOOL=ON -DWITH_PERL:BOOL=ON -DPERL_EXECUTABLE:FILEPATH=/usr/bin/perl -DPERL_INCLUDE_PATH:PATH=/usr/lib64/perl5/CORE -DPERL_LIBRARY:FILEPATH=/usr/lib64/libperl.so -DWITH_RUBY:BOOL=ON -DRUBY_SITEARCH_DIR:PATH=/usr/local/lib64/ruby/site_ruby -DRUBY_SITELIB_DIR:PATH=/usr/local/share/ruby/site_ruby -DRUBY_VENDORARCH_DIR:PATH=/usr/lib64/ruby/vendor_ruby -DRUBY_VENDORLIB_DIR:PATH=/usr/share/ruby/vendor_ruby -DRUBY_HAS_VENDOR_RUBY:BOOL=ON -DWITH_R:BOOL=ON -DR_INCLUDE_DIRS:PATH=/usr/include/R -DWITH_CHECK=ON -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DWITH_MATLAB:BOOL=OFF -Wno-dev -DEXIT_ON_ERROR:BOOL=ON -- The C compiler identification is GNU 14.0.1 -- The CXX compiler identification is GNU 14.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found SWIG: /usr/bin/swig (found version "4.2.1") -- Found PkgConfig: /usr/bin/pkg-config (found version "2.1.0") -- Looking for sin in m -- Looking for sin in m - found -- Performing Test LIBXML_LIBXML_TEST -- Performing Test LIBXML_LIBXML_TEST - Success -- LIBXML_LIBXML_TEST = 1 -- Found LIBXML: /usr/lib64/libxml2.so (found version "2.12.6") -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so - found -- Found BZ2: /usr/lib64/libbz2.so (found version "1.0.8") -- Looking for gzopen in /usr/lib64/libz.so -- Looking for gzopen in /usr/lib64/libz.so - found -- Checking for module 'minizip' -- Found minizip, version 3.0.10 -- Performing Test CHECK_CHECK_TEST -- Performing Test CHECK_CHECK_TEST - Success -- Found CHECK: /usr/lib64/libcheck.so (found version "0.2") -- Looking for include file check.h -- Looking for include file check.h - found -- Looking for include file expat.h -- Looking for include file expat.h - found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - not found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Found PythonInterp: /usr/bin/python3 (found version "3.12.3") -- Found Perl: /usr/bin/perl (found version "5.38.2") -- Found PerlLibs: /usr/lib64/libperl.so (found version "5.38.2") -- Found PythonLibs: /usr/lib64/libpython3.12.so (found version "3.12.3") -- Found Ruby: /usr/bin/ruby (found suitable version "3.3.0", minimum required is "1.8.0") -- ---------------------------------------------------------------------- libSBML version 5.20.2 ---------------------------------------------------------------------- More information and the latest version are available online at https://sbml.org/software/libsbml/ Please report problems using the issue tracker at https://github.com/sbmlteam/libsbml/issues To contact the developers directly, email libsbml-team@googlegroups.com Configured on host '175b5fa9af9d40d8a84c87adfb51a846' host type = Linux host operating system = Linux 6.6.13-200.fc39.x86_64 host CPU architecture = x86_64 General build flags: CC = /usr/bin/gcc CXX = /usr/bin/g++ CPPFLAGS = -DLINUX CFLAGS = -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC CXXFLAGS = -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC LDFLAGS = -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes XML parser library configuration: XML library = libxml2 CPPFLAGS for XML = -I/usr/include/libxml2 LIBS for XML = /usr/lib64/libxml2.so Other libSBML configuration settings: Installation $prefix = /usr -- Value of $LD_LIBRARY_PATH = -- Using SWIG = /usr/bin/swig (Version 4.2.1) -- Using Python = /usr/bin/python3 -- Using Perl = /usr/bin/perl -- Using Ruby = -- Using R = /usr/bin/R -- Using libcheck = /usr/lib64/libcheck.so -- Using C++ namespace ('libsbml') = no -- -- Build examples = no -- -- -- Support for SBML Level 3 Packages: -- SBML 'arrays' package = OFF -- SBML 'comp' package = ON -- SBML 'distrib' package = OFF -- SBML 'dyn' package = OFF -- SBML 'fbc' package = ON -- SBML 'groups' package = ON -- SBML 'l3v2extendedmath' package = ON -- SBML 'layout' package = ON -- SBML 'multi' package = ON -- SBML 'qual' package = ON -- SBML 'render' package = ON -- SBML 'req' package = OFF -- SBML 'spatial' package = OFF -- -- Other potentially important settings: -- Compression support is enabled for .zip and .gz files -- Compression support is enabled for .bz2 files -- ---------------------------------------------------------------------- -- Configuring done (4.8s) -- Generating done (0.2s) -- Build files have been written to: /builddir/build/BUILD/libsbml-5.20.2/build CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_SKIP_INSTALL_RPATH CSHARP_COMPILER INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C build make: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/cmake -S/builddir/build/BUILD/libsbml-5.20.2 -B/builddir/build/BUILD/libsbml-5.20.2/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsbml-5.20.2/build/CMakeFiles /builddir/build/BUILD/libsbml-5.20.2/build//CMakeFiles/progress.marks make: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/depend /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src /builddir/build/BUILD/libsbml-5.20.2/build 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-mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Submodel* CompModelPlugin::createSubmodel()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp:318:3: note: in expansion of macro ‘COMP_CREATE_NS’ 318 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Port* CompModelPlugin::createPort()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp:459:3: note: in expansion of macro ‘COMP_CREATE_NS’ 459 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Submodel* CompModelPlugin::createSubmodel()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp:318:3: note: in expansion of macro ‘COMP_CREATE_NS’ 318 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Port* CompModelPlugin::createPort()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.cpp:459:3: note: in expansion of macro ‘COMP_CREATE_NS’ 459 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:75, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:405:3: note: in expansion of macro ‘COMP_CREATE_NS’ 405 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:546:3: note: in expansion of macro ‘COMP_CREATE_NS’ 546 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:75, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:405:3: note: in expansion of macro ‘COMP_CREATE_NS’ 405 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:546:3: note: in expansion of macro ‘COMP_CREATE_NS’ 546 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.h:72, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:41: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:175:7: note: in expansion of macro ‘COMP_CREATE_NS’ 175 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedElement* CompSBasePlugin::createReplacedElement()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:378:3: note: in expansion of macro ‘COMP_CREATE_NS’ 378 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedBy* CompSBasePlugin::createReplacedBy()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:452:3: note: in expansion of macro ‘COMP_CREATE_NS’ 452 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::createListOfReplacedElements()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:559:5: note: in expansion of macro ‘COMP_CREATE_NS’ 559 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.h:72, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:41: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:175:7: note: in expansion of macro ‘COMP_CREATE_NS’ 175 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedElement* CompSBasePlugin::createReplacedElement()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:378:3: note: in expansion of macro ‘COMP_CREATE_NS’ 378 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedBy* CompSBasePlugin::createReplacedBy()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:452:3: note: in expansion of macro ‘COMP_CREATE_NS’ 452 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::createListOfReplacedElements()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:559:5: note: in expansion of macro ‘COMP_CREATE_NS’ 559 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/CompBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator 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-c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/CompBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Deletion.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common 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src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Deletion.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfDeletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual SBase* ListOfDeletions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:167:5: note: in expansion of macro ‘COMP_CREATE_NS’ 167 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfDeletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual SBase* ListOfDeletions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:167:5: note: in expansion of macro ‘COMP_CREATE_NS’ 167 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function ‘virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function ‘virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function ‘virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function ‘virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfPorts.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfPorts.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual SBase* ListOfPorts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfPorts.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfPorts.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfPorts.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual SBase* ListOfPorts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfPorts.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function ‘virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:123:5: note: in expansion of macro ‘COMP_CREATE_NS’ 123 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function ‘virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:123:5: note: in expansion of macro ‘COMP_CREATE_NS’ 123 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ReplacedElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/ReplacedElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Replacing.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Replacing.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘SBaseRef* SBaseRef::createSBaseRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp:557:5: note: in expansion of macro ‘COMP_CREATE_NS’ 557 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘virtual SBase* SBaseRef::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp:676:7: note: in expansion of macro ‘COMP_CREATE_NS’ 676 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp:687:7: note: in expansion of macro ‘COMP_CREATE_NS’ 687 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘SBaseRef* SBaseRef::createSBaseRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp:557:5: note: in expansion of macro ‘COMP_CREATE_NS’ 557 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘virtual SBase* SBaseRef::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp:676:7: note: in expansion of macro ‘COMP_CREATE_NS’ 676 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/SBaseRef.cpp:687:7: note: in expansion of macro ‘COMP_CREATE_NS’ 687 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Submodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Submodel.cpp:48: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Submodel.cpp: In member function ‘Deletion* Submodel::createDeletion()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Submodel.cpp:502:3: note: in expansion of macro ‘COMP_CREATE_NS’ 502 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Submodel.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Submodel.cpp:48: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Submodel.cpp: In member function ‘Deletion* Submodel::createDeletion()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/Submodel.cpp:502:3: note: in expansion of macro ‘COMP_CREATE_NS’ 502 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util/CompFlatteningConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -MF 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util/SBMLFileResolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:40: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function ‘void ExtModelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:290:3: note: in expansion of macro ‘COMP_CREATE_NS’ 290 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:40: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function ‘void ExtModelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:290:3: note: in expansion of macro ‘COMP_CREATE_NS’ 290 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:40: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function ‘void SubmodelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:329:3: note: in expansion of macro ‘COMP_CREATE_NS’ 329 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:40: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function ‘void SubmodelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:329:3: note: in expansion of macro ‘COMP_CREATE_NS’ 329 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o.d -o 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension 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directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.h:150, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:39: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘FluxBound* FbcModelPlugin::createFluxBound()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:687:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 687 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘Objective* FbcModelPlugin::createObjective()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:952:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 952 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneProduct* FbcModelPlugin::createGeneProduct()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1132:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1132 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneAssociation* FbcModelPlugin::createGeneAssociation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1339:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1339 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘UserDefinedConstraint* FbcModelPlugin::createUserDefinedConstraint()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1578:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1578 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:2408:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 2408 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.h:150, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:39: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘FluxBound* FbcModelPlugin::createFluxBound()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:687:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 687 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘Objective* FbcModelPlugin::createObjective()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:952:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 952 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneProduct* FbcModelPlugin::createGeneProduct()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1132:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1132 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneAssociation* FbcModelPlugin::createGeneAssociation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1339:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1339 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘UserDefinedConstraint* FbcModelPlugin::createUserDefinedConstraint()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1578:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1578 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:2408:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 2408 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:153:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 153 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:451:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 451 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:153:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 153 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:451:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 451 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.h:52, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp: In member function ‘KeyValuePair* FbcSBasePlugin::createKeyValuePair()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp:233:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 233 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.h:52, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp: In member function ‘KeyValuePair* FbcSBasePlugin::createKeyValuePair()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp:233:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 233 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Association.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcAnd* FbcAnd::createAnd()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp:305:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 305 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcOr* FbcAnd::createOr()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp:342:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 342 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘GeneProductRef* FbcAnd::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp:379:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 379 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcAnd* FbcAnd::createAnd()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp:305:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 305 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcOr* FbcAnd::createOr()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp:342:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 342 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘GeneProductRef* FbcAnd::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAnd.cpp:379:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 379 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.h:110, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcAnd* ListOfFbcAssociations::createAnd()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:957:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 957 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcOr* ListOfFbcAssociations::createOr()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:994:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 994 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘GeneProductRef* ListOfFbcAssociations::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1031:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1031 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1127:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1127 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1135:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1135 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1143:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1143 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1151:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1151 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.h:110, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcAnd* ListOfFbcAssociations::createAnd()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:957:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 957 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcOr* ListOfFbcAssociations::createOr()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:994:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 994 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘GeneProductRef* ListOfFbcAssociations::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1031:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1031 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1127:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1127 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1135:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1135 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1143:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1143 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1151:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1151 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcAnd* FbcOr::createAnd()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp:317:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 317 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcOr* FbcOr::createOr()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp:354:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 354 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘GeneProductRef* FbcOr::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp:391:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 391 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcAnd* FbcOr::createAnd()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp:317:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 317 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcOr* FbcOr::createOr()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp:354:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 354 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘GeneProductRef* FbcOr::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FbcOr.cpp:391:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 391 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.h:131, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function ‘virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.cpp:1189:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1189 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.h:131, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function ‘virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxBound.cpp:1189:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1189 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.h:98, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘FluxObjective* ListOfFluxObjectives::createFluxObjective()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1397:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1397 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1493:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1493 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.h:98, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘FluxObjective* ListOfFluxObjectives::createFluxObjective()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1397:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1397 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1493:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1493 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘Association* GeneAssociation::createAssociation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:355:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 355 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:704:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 704 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘Association* GeneAssociation::createAssociation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:355:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 355 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:704:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 704 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.h:94, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘GeneProduct* ListOfGeneProducts::createGeneProduct()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1116:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1116 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1212:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1212 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.h:94, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘GeneProduct* ListOfGeneProducts::createGeneProduct()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1116:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1116 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1212:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1212 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:101, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcAnd* GeneProductAssociation::createAnd()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:218:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 218 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcOr* GeneProductAssociation::createOr()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:233:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 233 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:248:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 248 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:994:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 994 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:101, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcAnd* GeneProductAssociation::createAnd()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:218:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 218 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcOr* GeneProductAssociation::createOr()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:233:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 233 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:248:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 248 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:994:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 994 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/GeneProductRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/KeyValuePair.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/KeyValuePair.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.h:58, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘KeyValuePair* ListOfKeyValuePairs::createKeyValuePair()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:326:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 326 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘virtual SBase* ListOfKeyValuePairs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:412:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 412 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.h:58, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘KeyValuePair* ListOfKeyValuePairs::createKeyValuePair()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:326:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 326 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘virtual SBase* ListOfKeyValuePairs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:412:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 412 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.h:59, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp: In member function ‘UserDefinedConstraintComponent* ListOfUserDefinedConstraintComponents::createUserDefinedConstraintComponent()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:274:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 274 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp: In member function ‘virtual SBase* ListOfUserDefinedConstraintComponents::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:384:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 384 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.h:59, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp: In member function ‘UserDefinedConstraintComponent* ListOfUserDefinedConstraintComponents::createUserDefinedConstraintComponent()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:274:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 274 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp: In member function ‘virtual SBase* ListOfUserDefinedConstraintComponents::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:384:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 384 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.h:58, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp: In member function ‘UserDefinedConstraint* ListOfUserDefinedConstraints::createUserDefinedConstraint()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:264:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 264 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp: In member function ‘virtual SBase* ListOfUserDefinedConstraints::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:409:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 409 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.h:58, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp: In member function ‘UserDefinedConstraint* ListOfUserDefinedConstraints::createUserDefinedConstraint()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:264:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 264 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp: In member function ‘virtual SBase* ListOfUserDefinedConstraints::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:409:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 409 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.h:139, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘FluxObjective* Objective::createFluxObjective()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp:477:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 477 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘Objective* ListOfObjectives::createObjective()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp:1443:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1443 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘virtual SBase* ListOfObjectives::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp:1562:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1562 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.h:139, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘FluxObjective* Objective::createFluxObjective()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp:477:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 477 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘Objective* ListOfObjectives::createObjective()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp:1443:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1443 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘virtual SBase* ListOfObjectives::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/Objective.cpp:1562:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1562 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:58, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp: In member function ‘UserDefinedConstraintComponent* UserDefinedConstraint::createUserDefinedConstraintComponent()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp:556:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 556 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:58, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp: In member function ‘UserDefinedConstraintComponent* UserDefinedConstraint::createUserDefinedConstraintComponent()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp:556:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 556 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml 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'/builddir/build/BUILD/libsbml-5.20.2/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml 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'/builddir/build/BUILD/libsbml-5.20.2/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.h:57, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function ‘Group* GroupsModelPlugin::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:238:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 238 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.h:57, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function ‘Group* GroupsModelPlugin::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:238:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 238 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.h:169, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.cpp: In member function ‘Member* Group::createMember()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.cpp:454:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 454 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.h:169, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.cpp: In member function ‘Member* Group::createMember()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Group.cpp:454:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 454 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.h:77, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘Group* ListOfGroups::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp:252:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 252 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘virtual SBase* ListOfGroups::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp:312:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 312 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.h:77, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘Group* ListOfGroups::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp:252:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 252 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘virtual SBase* ListOfGroups::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfGroups.cpp:312:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 312 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.h:105, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘Member* ListOfMembers::createMember()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp:352:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 352 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘virtual SBase* ListOfMembers::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp:463:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 463 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.h:105, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘Member* ListOfMembers::createMember()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp:352:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 352 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘virtual SBase* ListOfMembers::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/ListOfMembers.cpp:463:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 463 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Member.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml/Member.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator 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src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o.d -o 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'/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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-I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o.d -o 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml 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CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator 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CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src 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src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.h:62, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function ‘Layout* LayoutModelPlugin::createLayout()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:485:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 485 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.h:62, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function ‘Layout* LayoutModelPlugin::createLayout()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:485:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 485 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd 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src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘LineSegment* Curve::createLineSegment()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp:366:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 366 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘CubicBezier* Curve::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp:381:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 381 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp:649:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 649 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘LineSegment* Curve::createLineSegment()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp:366:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 366 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘CubicBezier* Curve::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp:381:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 381 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.cpp:649:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 649 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Dimensions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Dimensions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.h:64, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:41: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘ReferenceGlyph* GeneralGlyph::createReferenceGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:656:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 656 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1183:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1183 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.h:64, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:41: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘ReferenceGlyph* GeneralGlyph::createReferenceGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:656:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 656 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1183:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1183 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.cpp:39: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1207:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1207 | LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.cpp:39: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1207:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1207 | LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘CompartmentGlyph* Layout::createCompartmentGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1387:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1387 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘SpeciesGlyph* Layout::createSpeciesGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1403:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1403 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘ReactionGlyph* Layout::createReactionGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1419:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1419 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GeneralGlyph* Layout::createGeneralGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1434:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1434 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘TextGlyph* Layout::createTextGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1450:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1450 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GraphicalObject* Layout::createAdditionalGraphicalObject()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1467:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1467 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfLayouts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2048:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2048 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2220:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2220 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2372:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2372 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2521:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2521 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2670:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2670 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘CompartmentGlyph* Layout::createCompartmentGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1387:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1387 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘SpeciesGlyph* Layout::createSpeciesGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1403:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1403 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘ReactionGlyph* Layout::createReactionGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1419:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1419 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GeneralGlyph* Layout::createGeneralGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1434:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1434 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘TextGlyph* Layout::createTextGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1450:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1450 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GraphicalObject* Layout::createAdditionalGraphicalObject()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:1467:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1467 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfLayouts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/bmake[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' uild/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2048:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2048 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2220:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2220 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2372:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2372 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2521:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2521 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.cpp:2670:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2670 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/LineSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/LineSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:41: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:503:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 503 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:980:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 980 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:41: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:503:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 503 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:980:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 980 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -MF 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19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src 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'/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/validator/LayoutValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiASTPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH 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src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiASTPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function ‘virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:140:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 140 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function ‘CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:587:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 587 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function ‘virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:140:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 140 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function ‘CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:587:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 587 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:51, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function ‘virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:136:8: note: in expansion of macro ‘MULTI_CREATE_NS’ 136 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:51, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function ‘virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:136:8: note: in expansion of macro ‘MULTI_CREATE_NS’ 136 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.h:54, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:132:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 132 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:325:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 325 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:352:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 352 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:408:4: note: in expansion of macro ‘MULTI_CREATE_NS’ 408 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.h:54, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:132:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 132 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:325:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 325 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:352:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 352 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:408:4: note: in expansion of macro ‘MULTI_CREATE_NS’ 408 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function ‘virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:129:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 129 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function ‘virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:129:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 129 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:58, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:137:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 137 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:484:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 484 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:637:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 637 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:739:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 739 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:56, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function ‘virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:128:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 128 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function ‘SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:299:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 299 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:58, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:137:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 137 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:484:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 484 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:637:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 637 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:739:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 739 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:56, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function ‘virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:128:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 128 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function ‘SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:299:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 299 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function ‘virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.cpp:746:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 746 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function ‘virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/CompartmentReference.cpp:746:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 746 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:76, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function ‘virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:846:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:76, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function ‘virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:846:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.h:82, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:454:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 454 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:611:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 611 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:768:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 768 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:925:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 925 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1182:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 1182 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1630:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1630 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1637:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1637 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.h:142, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function ‘virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:846:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.h:82, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:454:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 454 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:611:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 611 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:768:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 768 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:925:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 925 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1182:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 1182 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1630:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1630 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1637:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1637 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function ‘virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:744:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 744 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.h:142, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function ‘virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:846:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function ‘virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:744:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 744 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.h:84, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:549:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 549 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘virtual SBase* SpeciesFeature::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:762:3: note: in expansion of macro ‘MULTI_CREATE_NS’ 762 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1385:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1385 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1392:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1392 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.h:84, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:549:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 549 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘virtual SBase* SpeciesFeature::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:762:3: note: in expansion of macro ‘MULTI_CREATE_NS’ 762 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1385:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1385 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1392:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1392 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:77, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:432:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 432 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:623:3: note: in expansion of macro ‘MULTI_CREATE_NS’ 623 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1004:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1004 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:591:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 591 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:77, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:432:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 432 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:623:3: note: in expansion of macro ‘MULTI_CREATE_NS’ 623 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1004:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1004 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:69, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:591:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 591 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:75, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:865:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 865 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:75, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:865:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 865 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:75, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:934:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 934 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:75, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:934:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 934 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:79, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:859:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 859 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:118, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function ‘SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:275:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 275 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function ‘virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:487:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 487 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:79, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:859:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 859 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:118, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:35: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function ‘SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:275:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 275 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function ‘virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:487:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 487 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/MultiConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC 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src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o cd 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src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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'/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml 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Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common 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src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.h:63, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp:839:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 839 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘Transition* QualModelPlugin::createTransition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1021:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1021 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.h:63, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp:839:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 839 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘Transition* QualModelPlugin::createTransition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1021:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1021 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/DefaultTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.h:77, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘DefaultTerm* ListOfFunctionTerms::createDefaultTerm()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1072:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1072 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1129:3: note: in expansion of macro ‘QUAL_CREATE_NS’ 1129 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/DefaultTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.h:77, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘DefaultTerm* ListOfFunctionTerms::createDefaultTerm()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1072:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1072 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1129:3: note: in expansion of macro ‘QUAL_CREATE_NS’ 1129 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.h:107, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual SBase* ListOfInputs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.cpp:1342:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1342 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.h:98, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual SBase* ListOfOutputs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.cpp:1245:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1245 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.h:107, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual SBase* ListOfInputs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Input.cpp:1342:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1342 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.h:89, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1338:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1338 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.h:98, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual SBase* ListOfOutputs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Output.cpp:1245:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1245 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.h:91, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Input* Transition::createInput()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:460:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 460 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Output* Transition::createOutput()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:644:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 644 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘FunctionTerm* Transition::createFunctionTerm()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:802:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 802 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual SBase* ListOfTransitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:1771:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1771 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.h:89, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1338:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1338 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.h:91, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Input* Transition::createInput()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:460:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 460 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Output* Transition::createOutput()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:644:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 644 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘FunctionTerm* Transition::createFunctionTerm()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:802:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 802 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual SBase* ListOfTransitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/Transition.cpp:1771:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1771 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ 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src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml 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'/builddir/build/BUILD/libsbml-5.20.2/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX 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src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/QualValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints 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object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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[ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function ‘LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:450:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 450 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function ‘GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:713:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 713 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function ‘LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:450:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 450 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:37: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function ‘GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:713:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 713 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Ellipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.h:72, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function ‘GlobalStyle* GlobalRenderInformation::createGlobalStyle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:369:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 369 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Ellipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.h:72, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function ‘GlobalStyle* GlobalRenderInformation::createGlobalStyle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:369:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 369 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GlobalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.h:102, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.cpp: In member function ‘GradientStop* GradientBase::createGradientStop()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.cpp:569:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 569 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientStop.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.h:102, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.cpp: In member function ‘GradientStop* GradientBase::createGradientStop()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.cpp:569:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 569 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientStop.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension 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src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src 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src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Image.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Image.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.h:77, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘RenderGroup* LineEnding::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:540:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 540 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘BoundingBox* LineEnding::createBoundingBox()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:566:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 566 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘virtual SBase* LineEnding::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:1320:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1320 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:1322:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1322 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘LineEnding::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:1494:47: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 1494 | if (log && log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:1398:16: note: ‘numErrs’ was declared here 1398 | unsigned int numErrs; | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.h:77, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘RenderGroup* LineEnding::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:540:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 540 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘BoundingBox* LineEnding::createBoundingBox()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:566:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 566 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘virtual SBase* LineEnding::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:1320:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1320 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:1322:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1322 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘LineEnding::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:1494:47: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 1494 | if (log && log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LineEnding.cpp:1398:16: note: ‘numErrs’ was declared here 1398 | unsigned int numErrs; | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:66, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:38: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘ColorDefinition* ListOfColorDefinitions::createColorDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:299:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:371:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 371 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘RenderCubicBezier* ListOfCurveElements::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:328:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 328 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:417:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 417 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:66, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:38: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘ColorDefinition* ListOfColorDefinitions::createColorDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:299:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:371:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 371 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘RenderCubicBezier* ListOfCurveElements::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:328:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 328 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:417:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 417 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.h:75, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Image* ListOfDrawables::createImage()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:265:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 265 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Ellipse* ListOfDrawables::createEllipse()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:293:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 293 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Rectangle* ListOfDrawables::createRectangle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:321:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 321 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Polygon* ListOfDrawables::createPolygon()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:349:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 349 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderGroup* ListOfDrawables::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:377:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 377 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘LineEnding* ListOfDrawables::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:405:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 405 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Text* ListOfDrawables::createText()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:433:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 433 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderCurve* ListOfDrawables::createCurve()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:461:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 461 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘virtual SBase* ListOfDrawables::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:521:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 521 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.h:75, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Image* ListOfDrawables::createImage()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:265:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 265 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Ellipse* ListOfDrawables::createEllipse()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:293:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 293 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Rectangle* ListOfDrawables::createRectangle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:321:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 321 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Polygon* ListOfDrawables::createPolygon()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:349:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 349 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderGroup* ListOfDrawables::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:377:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 377 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘LineEnding* ListOfDrawables::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:405:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 405 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Text* ListOfDrawables::createText()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:433:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 433 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderCurve* ListOfDrawables::createCurve()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:461:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 461 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘virtual SBase* ListOfDrawables::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfDrawables.cpp:521:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 521 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:429:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 429 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘GlobalRenderInformation* ListOfGlobalRenderInformation::createGlobalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:609:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 609 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:844:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 844 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘ListOfGlobalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:942:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 942 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:900:16: note: ‘numErrs’ was declared here 900 | unsigned int numErrs; | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘GlobalStyle* ListOfGlobalStyles::createGlobalStyle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:287:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 287 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:352:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 352 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:429:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 429 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘GlobalRenderInformation* ListOfGlobalRenderInformation::createGlobalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:609:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 609 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:844:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 844 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘ListOfGlobalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:942:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 942 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:900:16: note: ‘numErrs’ was declared here 900 | unsigned int numErrs; | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:38: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘LinearGradient* ListOfGradientDefinitions::createLinearGradient()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:310:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 310 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘RadialGradient* ListOfGradientDefinitions::createRadialGradient()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:339:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 339 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:399:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 399 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘GlobalStyle* ListOfGlobalStyles::createGlobalStyle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:287:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 287 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:352:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 352 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.h:84, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘GradientStop* ListOfGradientStops::createGradientStop()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:308:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 308 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:368:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:70, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:38: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘LinearGradient* ListOfGradientDefinitions::createLinearGradient()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:310:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 310 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘RadialGradient* ListOfGradientDefinitions::createRadialGradient()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:339:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 339 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:399:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 399 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.h:72, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:38: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘LineEnding* ListOfLineEndings::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:299:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:373:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 373 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.h:84, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘GradientStop* ListOfGradientStops::createGradientStop()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:308:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 308 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:368:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.h:72, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:38: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘LineEnding* ListOfLineEndings::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:299:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:373:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 373 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:72, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘DefaultValues* ListOfLocalRenderInformation::createDefaultValues()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:426:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 426 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘LocalRenderInformation* ListOfLocalRenderInformation::createLocalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:590:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 590 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:794:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 794 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘ListOfLocalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:892:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 892 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:850:16: note: ‘numErrs’ was declared here 850 | unsigned int numErrs; | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.h:71, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘LocalStyle* ListOfLocalStyles::createLocalStyle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:303:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 303 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:368:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:72, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘DefaultValues* ListOfLocalRenderInformation::createDefaultValues()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:426:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 426 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘LocalRenderInformation* ListOfLocalRenderInformation::createLocalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:590:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 590 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:794:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 794 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘ListOfLocalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:892:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 892 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:850:16: note: ‘numErrs’ was declared here 850 | unsigned int numErrs; | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createLocalStyle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:343:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 343 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createStyle(const std::string&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:367:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 367 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.h:71, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘LocalStyle* ListOfLocalStyles::createLocalStyle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:303:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 303 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:368:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createLocalStyle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:343:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 343 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createStyle(const std::string&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:367:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 367 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp: In constructor ‘Polygon::Polygon(const XMLNode&, unsigned int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp:124:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 124 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderPoint* Polygon::createPoint()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp:425:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 425 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderCubicBezier* Polygon::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp:453:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 453 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/LocalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.h:73, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp: In constructor ‘Polygon::Polygon(const XMLNode&, unsigned int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp:124:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 124 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderPoint* Polygon::createPoint()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp:425:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 425 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderCubicBezier* Polygon::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Polygon.cpp:453:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 453 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RadialGradient.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RadialGradient.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RadialGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -c 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src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderPoint* RenderCurve::createPoint()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp:477:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 477 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderCubicBezier* RenderCurve::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp:505:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 505 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/Layout.h:67, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderPoint* RenderCurve::createPoint()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp:477:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 477 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderCubicBezier* RenderCurve::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderCurve.cpp:505:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 505 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.h:76, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Image* RenderGroup::createImage()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1118:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1118 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Ellipse* RenderGroup::createEllipse()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1146:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1146 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Rectangle* RenderGroup::createRectangle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1174:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1174 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Polygon* RenderGroup::createPolygon()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1202:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1202 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderGroup* RenderGroup::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1230:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1230 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘LineEnding* RenderGroup::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1258:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1258 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Text* RenderGroup::createText()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1286:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1286 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderCurve* RenderGroup::createCurve()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1314:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1314 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘void RenderGroup::importOldCurve(const XMLNode&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:2631:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 2631 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.h:76, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Image* RenderGroup::createImage()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1118:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1118 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Ellipse* RenderGroup::createEllipse()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1146:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1146 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Rectangle* RenderGroup::createRectangle()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1174:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1174 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Polygon* RenderGroup::createPolygon()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1202:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1202 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderGroup* RenderGroup::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1230:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1230 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘LineEnding* RenderGroup::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1258:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1258 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Text* RenderGroup::createText()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1286:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1286 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderCurve* RenderGroup::createCurve()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:1314:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1314 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘void RenderGroup::importOldCurve(const XMLNode&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.cpp:2631:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 2631 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘ColorDefinition* RenderInformationBase::createColorDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:738:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 738 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘LinearGradient* RenderInformationBase::createLinearGradientDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:900:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 900 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘RadialGradient* RenderInformationBase::createRadialGradientDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:928:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 928 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘LineEnding* RenderInformationBase::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:1090:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1090 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘ColorDefinition* RenderInformationBase::createColorDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:738:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 738 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘LinearGradient* RenderInformationBase::createLinearGradientDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:900:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 900 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘RadialGradient* RenderInformationBase::createRadialGradientDefinition()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:928:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 928 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘LineEnding* RenderInformationBase::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderInformationBase.cpp:1090:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1090 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘bool Style::isSetGroup() const’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:564:19: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 564 | return (&mGroup != NULL); | ^ In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.h:73: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘RenderGroup* Style::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:597:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 597 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::getElementBySId(const std::string&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:1178:15: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 1178 | if (&mGroup != NULL) | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::getElementByMetaId(const std::string&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:1210:15: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 1210 | if (&mGroup != NULL) | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:1269:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1269 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘bool Style::isSetGroup() const’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:564:19: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 564 | return (&mGroup != NULL); | ^ In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:43: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.h:73: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘RenderGroup* Style::createGroup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:597:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 597 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::getElementBySId(const std::string&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:1178:15: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 1178 | if (&mGroup != NULL) | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::getElementByMetaId(const std::string&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:1210:15: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 1210 | if (&mGroup != NULL) | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Style.cpp:1269:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1269 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Text.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Transformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation2D.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderUtilities.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:463:29: warning: ‘%u’ directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:463:25: note: directive argument in the range [10, 4294967295] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~~~~~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:39: In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:463:13: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 6 and 23 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:469:28: warning: ‘T’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 469 | snprintf(cdate, 10, "%uT", mDay); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:469:13: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:475:28: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 475 | snprintf(cdate, 10, "%u:", mHour); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:475:13: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:481:28: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 481 | snprintf(cdate, 10, "%u:", mMinute); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:481:13: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:487:28: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 487 | snprintf(cdate, 10, "%u", mSecond); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:487:13: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 3 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:506:30: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 506 | snprintf(cdate, 10, "%u:", mHoursOffset); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:506:15: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:512:30: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 512 | snprintf(cdate, 10, "%u", mMinutesOffset); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' ’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:512:15: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 3 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension 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src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/ModelHistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:463:29: warning: ‘%u’ directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:463:25: note: directive argument in the range [10, 4294967295] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~~~~~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:39: In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:463:13: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 6 and 23 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:469:28: warning: ‘T’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 469 | snprintf(cdate, 10, "%uT", mDay); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:469:13: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:475:28: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 475 | snprintf(cdate, 10, "%u:", mHour); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:475:13: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:481:28: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 481 | snprintf(cdate, 10, "%u:", mMinute); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:481:13: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:487:28: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 487 | snprintf(cdate, 10, "%u", mSecond); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:487:13: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 3 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:506:30: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 506 | snprintf(cdate, 10, "%u:", mHoursOffset); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:506:15: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:512:30: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 512 | snprintf(cdate, 10, "%u", mMinutesOffset); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/Date.cpp:512:15: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 3 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelCreator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common 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src/CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLLocalParameterConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 39%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateRuleConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLReactionConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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-Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLReactionConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLReactionConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLReactionConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLReactionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRateRuleConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml 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-c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRateRuleConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRuleConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /usr/include/c++/14/string:51, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRuleConverter.h:96, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRuleConverter.cpp:45: In function ‘std::__copy_move::__copy_m(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’, inlined from ‘std::__copy_move_a2(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from ‘std::__copy_move_a1(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from ‘std::__copy_move_a > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from ‘std::copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from ‘std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from ‘std::__uninitialized_copy_a<__gnu_cxx::__normal_iterator > >, AssignmentRule**, AssignmentRule*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**, std::allocator&)AssignmentRule**’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector >::vector(std::vector > const&)’ at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from ‘reorderRules(std::vector >&)’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRuleConverter.cpp:173:42: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: ‘memmove’ forming offset 8 is out of the bounds [0, 8] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLReactionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLStripPackageConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRuleConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /usr/include/c++/14/string:51, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRuleConverter.h:96, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRuleConverter.cpp:45: In function ‘std::__copy_move::__copy_m(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’, inlined from ‘std::__copy_move_a2(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from ‘std::__copy_move_a1(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from ‘std::__copy_move_a > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from ‘std::copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from ‘std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from ‘std::__uninitialized_copy_a<__gnu_cxx::__normal_iterator > >, AssignmentRule**, AssignmentRule*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**, std::allocator&)AssignmentRule**’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector >::vector(std::vector > const&)’ at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from ‘reorderRules(std::vector >&)’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLRuleConverter.cpp:173:42: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: ‘memmove’ forming offset 8 is out of the bounds [0, 8] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLUnitsConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLUnitsConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLUnitsConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLUnitsConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common 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-MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLStripPackageConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.h: In copy constructor ‘ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.h:487:24: warning: ‘ASTBasePlugin::mExtendedMathType’ will be initialized after [-Wreorder] 487 | ExtendedMathType_t mExtendedMathType; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.h:486:34: warning: ‘std::vector ASTBasePlugin::mPkgASTNodeValues’ [-Wreorder] 486 | std::vector mPkgASTNodeValues; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.cpp:314:1: warning: when initialized here [-Wreorder] 314 | ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin& orig) | ^~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/SBMLUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml 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CMakeFiles/sbml-static.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ISBMLExtensionNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.h: In copy constructor ‘ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin&)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.h:487:24: warning: ‘ASTBasePlugin::mExtendedMathType’ will be initialized after [-Wreorder] 487 | ExtendedMathType_t mExtendedMathType; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.h:486:34: warning: ‘std::vector ASTBasePlugin::mPkgASTNodeValues’ [-Wreorder] 486 | std::vector mPkgASTNodeValues; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ASTBasePlugin.cpp:314:1: warning: when initialized here [-Wreorder] 314 | ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin& orig) | ^~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLDocumentPluginNotRequired.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/ISBMLExtensionNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionException.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionException.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionException.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtensionException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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/builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtensionException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtensionRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 368 | return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints 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src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 368 | return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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src/CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/AlgebraicRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml 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src/CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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src/CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/KineticLaw.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml 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-MD -MT src/CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o -MF CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/LocalParameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Model.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Model.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp: In member function ‘Model::createConstraintUnitsData(UnitFormulaFormatter*)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6447:32: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 4 [-Wformat-overflow=] 6447 | sprintf(newId, "constraint_%u", n); | ^~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6447:20: note: directive argument in the range [0, 4294967294] 6447 | sprintf(newId, "constraint_%u", n); | ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:42: In function ‘sprintf’, inlined from ‘Model::createConstraintUnitsData(UnitFormulaFormatter*)’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6447:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 13 and 22 bytes into a destination of size 15 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp: In member function ‘Model::createEventUnitsData(UnitFormulaFormatter*)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6650:27: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=] 6650 | sprintf(newId, "event_%u", countEvents); | ^~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6650:20: note: directive argument in the range [0, 4294967294] 6650 | sprintf(newId, "event_%u", countEvents); | ^~~~~~~~~~ In function ‘sprintf’, inlined from ‘Model::createEventUnitsData(UnitFormulaFormatter*)’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6650:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 8 and 17 bytes into a destination of size 12 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Model.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Model.cpp.o -MF CMakeFiles/sbml.dir/sbml/Model.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Model.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp: In member function ‘Model::createConstraintUnitsData(UnitFormulaFormatter*)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6447:32: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 4 [-Wformat-overflow=] 6447 | sprintf(newId, "constraint_%u", n); | ^~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6447:20: note: directive argument in the range [0, 4294967294] 6447 | sprintf(newId, "constraint_%u", n); | ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:42: In function ‘sprintf’, inlined from ‘Model::createConstraintUnitsData(UnitFormulaFormatter*)’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6447:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 13 and 22 bytes into a destination of size 15 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp: In member function ‘Model::createEventUnitsData(UnitFormulaFormatter*)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6650:27: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=] 6650 | sprintf(newId, "event_%u", countEvents); | ^~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6650:20: note: directive argument in the range [0, 4294967294] 6650 | sprintf(newId, "event_%u", countEvents); | ^~~~~~~~~~ In function ‘sprintf’, inlined from ‘Model::createEventUnitsData(UnitFormulaFormatter*)’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Model.cpp:6650:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 8 and 17 bytes into a destination of size 12 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/Parameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH 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src/CMakeFiles/sbml-static.dir/sbml/SBMLNamespaces.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBMLNamespaces.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBMLNamespaces.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/SBMLNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml 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object src/CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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object src/CMakeFiles/sbml-static.dir/sbml/SBMLVisitor.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Species.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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Building CXX object src/CMakeFiles/sbml.dir/sbml/Species.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/DefinitionURLRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/DefinitionURLRegistry.cpp: In static member function ‘static int DefinitionURLRegistry::addDefinitionURL(const std::string&, int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/DefinitionURLRegistry.cpp:82:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 82 | if (getNumDefinitionURLs() == n + 1) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/DefinitionURLRegistry.cpp: In static member function ‘static std::string DefinitionURLRegistry::getDefinitionUrlByIndex(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/DefinitionURLRegistry.cpp:106:11: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 106 | if (i == index) | ~~^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/L3FormulaFormatter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ 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cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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'/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/L3Parser.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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src/CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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src/CMakeFiles/sbml-static.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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src/CMakeFiles/sbml-static.dir/sbml/validator/SBOConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/SBOConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/SBOConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/validator/SBOConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 57%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/SBMLValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 57%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml 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directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 57%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/UnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionRecursion.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionRecursion.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionRecursion.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/validator/constraints/FunctionDefinitionRecursion.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 59%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/KineticLawVars.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/KineticLawVars.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/KineticLawVars.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/validator/constraints/KineticLawVars.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 59%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/IdBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/validator/constraints/PowerUnitsCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 61%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 64%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml 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object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueMetaId.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueMetaId.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueMetaId.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueMetaId.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/validator/constraints/UniqueMetaId.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 64%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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[ 66%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ValidCnUnitsValue.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/xml/XMLNode.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/xml/XMLNode.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/xml/XMLNode.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 67%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLInputStream.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLOutputStream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLOutputStream.cpp: In member function ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLOutputStream.cpp:997:44: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 5 and 15 [-Wformat-truncation=] 997 | snprintf(formattedDateAndTime, 17, "%d-%02d-%02d %02d:%02d", | ^~~~ In member function ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’, inlined from ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLOutputStream.cpp:973:1: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLOutputStream.cpp:997:40: note: directive argument in the range [-2147483647, 2147483647] 997 | snprintf(formattedDateAndTime, 17, "%d-%02d-%02d %02d:%02d", | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLOutputStream.cpp:44: In function ‘snprintf’, inlined from ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLOutputStream.cpp:997:13, inlined from ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLOutputStream.cpp:973:1: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 14 and 60 bytes into a destination of size 17 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 68%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLNamespaces.cpp.o cd 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLOutputStream.cpp: In member function ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLOutputStream.cpp:997:44: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 5 and 15 [-Wformat-truncation=] 997 | snprintf(formattedDateAndTime, 17, "%d-%02d-%02d %02d:%02d", | ^~~~ In member function ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’, inlined from ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLOutputStream.cpp:973:1: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLOutputStream.cpp:997:40: note: directive argument in the range [-2147483647, 2147483647] 997 | snprintf(formattedDateAndTime, 17, "%d-%02d-%02d %02d:%02d", | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLOutputStream.cpp:44: In function ‘snprintf’, inlined from ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLOutputStream.cpp:997:13, inlined from ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’ at /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLOutputStream.cpp:973:1: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 14 and 60 bytes into a destination of size 17 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 69%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLTriple.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/xml/LibXMLNamespaces.cpp.o -MF CMakeFiles/sbml.dir/sbml/xml/LibXMLNamespaces.cpp.o.d -o CMakeFiles/sbml.dir/sbml/xml/LibXMLNamespaces.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/LibXMLNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 69%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o -MF CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o.d -o CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/LibXMLParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 69%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/LibXMLTranscode.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/xml/LibXMLTranscode.cpp.o -MF CMakeFiles/sbml.dir/sbml/xml/LibXMLTranscode.cpp.o.d -o CMakeFiles/sbml.dir/sbml/xml/LibXMLTranscode.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/LibXMLTranscode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 69%] Swig Perl bindings source cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/perl && /usr/bin/python3 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py --language perl --top /builddir/build/BUILD/libsbml-5.20.2 --master /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/libsbml.i --output /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/perl/LibSBML.pod --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_MULTI --define USE_QUAL --define USE_RENDER cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/perl && /usr/bin/swig -I/builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/ -I/builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/include -c++ -perl5 -proxy -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/perl/LibSBML_wrap.cpp /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/LibSBML.i make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:447: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(\s+?)\*/', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:502: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('/\*\*(\s+\*)+', r'/** \n *', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:506: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('\*/', r'* @internal\n */', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:851: SyntaxWarning: invalid escape sequence '\W' p = re.compile('(\W+)(\w+?)::(\w+\s*\([^)]*?\))') /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:994: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@link\s*\*?\s+(\w+)?#(\w+)\s*\*?\s+(\w+)\s*@endlink') /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1010: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^\s*\*\s+@par(\s)', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1015: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(@if|@ifnot)[\s*]+(\w+)[\s*]+(.+?)((@else)\s+(.+?))?@endif', re.DOTALL) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1024: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+)\*\s*$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1026: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^((?!\s+\Z)\s+)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1028: SyntaxWarning: invalid escape sequence '\Z' p = re.compile('^(?!\Z)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1041: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@section\s+[^\s]+\s+(.*)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1043: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@subsection\s+[^\s]+\s+(.*)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1045: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@subsubsection\s+[^\s]+\s+(.*)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1051: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@image\s+html+\s+([^\s]+).*$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1053: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@image\s+latex+\s+([^\s]+).*$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1075: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@c(\n[ \t]*\*[ \t]*)([^ ,;()/*\n\t<]+)', r'\1\2', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1077: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@p(\n[ \t]*\*[ \t]+)([^ ,.:;()/*\n\t<]+)', r'\1\2', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1079: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@em(\n[ \t]*\*[ \t]*)([^ ,.:;()/*\n\t<]+)', r'\1\2', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1085: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+\*\s+)(@li\s+.*?)(\s+)(\*/|

\s+\*\s+(?!@li\s))', re.MULTILINE|re.DOTALL) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1090: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+\*\s+)(@deprecated\s)((\S|\s)+?)(

|\*/)', re.MULTILINE|re.DOTALL) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1111: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+)\*\s+\*\s+@', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1114: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s*)\*\s*

', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1116: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s*)\*?\s*

((\s+\*)+\s+

)+', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1119: SyntaxWarning: invalid escape sequence '\s' p = re.compile('

([\s*]*

)+', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1142: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@ref\s+\*?\s*(\w+)', re.DOTALL) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1227: SyntaxWarning: invalid escape sequence '\s' docstring = re.sub('(@see\s+\w+)::', r'\1#', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1235: SyntaxWarning: invalid escape sequence '\s' docstring = re.sub('(@see\s+)([\w:.]+)\(', r'\1#\2(', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1254: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@link([\s/*]+[\w\s,.:#()*]+[\s/*]*[\w():#]+[\s/*]*)@endlink', re.DOTALL) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1284: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@par(\s)', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1430: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(\s+)(\S+?)::(\w+\s*)(\([^)]*?\))', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1432: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(@see\s+)(\w+\s*)(\([^)]*?\))') /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1452: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^\s+(\S*\s*)', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1456: SyntaxWarning: invalid escape sequence '\S' p = re.compile('^[ \t]+(\S)', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1472: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@c(\n[ \t]*\*[ \t]*)([^ ,.:;()/*\n\t<]+)', r'\1C<\2>', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1474: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@p(\n[ \t]*\*[ \t]+)([^ ,.:;()/*\n\t<]+)', r'\1C<\2>', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1476: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@em(\n[ \t]*\*[ \t]*)([^ ,.:;()/*\n\t<]+)', r'\1I<\2>', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1743: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@copy(details|doc)\s+(\w+)') /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1755: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@htmlinclude\s+(\*\s+)*([-\w."\']+)', re.DOTALL) #' /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1760: SyntaxWarning: invalid escape sequence '\*' p = re.compile('^([ \t]*\*)[ \t]+\*[ \t]*$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig/swigdoc.py:1762: SyntaxWarning: invalid escape sequence '\*' p = re.compile('^([ \t]*\*[ \t]*)\n[ \t]*\*[ \t]*\n[ \t]*\*[ \t]*@li', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/swig/libsbmlutils.py:134: SyntaxWarning: invalid escape sequence '\s' match = re.search('(@class|@enum)\s+(\w+)', line) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/swig/libsbmlutils.py:144: SyntaxWarning: invalid escape sequence '\s' match = re.search('%template\s*\(([^)]+)\)', line) /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLInputStream.h:241: Warning 314: 'next' is a perl keyword /builddir/build/BUILD/libsbml-5.20.2/src/sbml/SBase.h:816: Warning 509: Overloaded method SBase::getAncestorOfType(int,std::string const &) effectively ignored, /builddir/build/BUILD/libsbml-5.20.2/src/sbml/SBase.h:864: Warning 509: as it is shadowed by SBase::getAncestorOfType(int,std::string const) const. /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:344: Warning 509: Overloaded method GraphicalPrimitive2D::setFillRule(FillRule_t const) effectively ignored, /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:328: Warning 509: as it is shadowed by GraphicalPrimitive2D::setFillRule(GraphicalPrimitive2D::FILL_RULE). /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.h:389: Warning 509: Overloaded method GradientBase::setSpreadMethod(GradientSpreadMethod_t const) effectively ignored, /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/GradientBase.h:373: Warning 509: as it is shadowed by GradientBase::setSpreadMethod(GradientBase::SPREADMETHOD). /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Text.h:448: Warning 509: Overloaded method Text::setFontWeight(Text::FONT_WEIGHT) effectively ignored, /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Text.h:444: Warning 509: as it is shadowed by Text::setFontWeight(FontWeight_t const). /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Text.h:486: Warning 509: Overloaded method Text::setFontStyle(Text::FONT_STYLE) effectively ignored, /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Text.h:481: Warning 509: as it is shadowed by Text::setFontStyle(FontStyle_t const). /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Text.h:522: Warning 509: Overloaded method Text::setTextAnchor(Text::TEXT_ANCHOR) effectively ignored, /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Text.h:517: Warning 509: as it is shadowed by Text::setTextAnchor(HTextAnchor_t const). /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Text.h:559: Warning 509: Overloaded method Text::setVTextAnchor(Text::TEXT_ANCHOR) effectively ignored, /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/Text.h:554: Warning 509: as it is shadowed by Text::setVTextAnchor(VTextAnchor_t const). /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.h:537: Warning 509: Overloaded method RenderGroup::setFontWeight(Text::FONT_WEIGHT) effectively ignored, /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.h:533: Warning 509: as it is shadowed by RenderGroup::setFontWeight(FontWeight_t const). /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.h:575: Warning 509: Overloaded method RenderGroup::setFontStyle(Text::FONT_STYLE) effectively ignored, /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.h:570: Warning 509: as it is shadowed by RenderGroup::setFontStyle(FontStyle_t const). /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.h:612: Warning 509: Overloaded method RenderGroup::setTextAnchor(Text::TEXT_ANCHOR) effectively ignored, /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.h:607: Warning 509: as it is shadowed by RenderGroup::setTextAnchor(HTextAnchor_t const). /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.h:684: Warning 509: Overloaded method RenderGroup::setVTextAnchor(VTextAnchor_t const) effectively ignored, /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.h:644: Warning 509: as it is shadowed by RenderGroup::setVTextAnchor(Text::TEXT_ANCHOR). /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.h:687: Warning 509: Overloaded method RenderGroup::setVtextAnchor(VTextAnchor_t const) effectively ignored, /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/RenderGroup.h:648: Warning 509: as it is shadowed by RenderGroup::setVtextAnchor(Text::TEXT_ANCHOR). /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/DefaultValues.h:915: Warning 509: Overloaded method DefaultValues::setSpreadMethod(GradientSpreadMethod_t const) effectively ignored, /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/DefaultValues.h:900: Warning 509: as it is shadowed by DefaultValues::setSpreadMethod(GradientBase::SPREADMETHOD const). /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/DefaultValues.h:1146: Warning 509: Overloaded method DefaultValues::setFillRule(FillRule_t) effectively ignored, /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/DefaultValues.h:1130: Warning 509: as it is shadowed by DefaultValues::setFillRule(GraphicalPrimitive2D::FILL_RULE const). /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/DefaultValues.h:1266: Warning 509: Overloaded method DefaultValues::setFontWeight(FontWeight_t) effectively ignored, /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/DefaultValues.h:1250: Warning 509: as it is shadowed by DefaultValues::setFontWeight(Text::FONT_WEIGHT const). /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/DefaultValues.h:1314: Warning 509: Overloaded method DefaultValues::setFontStyle(FontStyle_t) effectively ignored, /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/DefaultValues.h:1298: Warning 509: as it is shadowed by DefaultValues::setFontStyle(Text::FONT_STYLE const). /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/DefaultValues.h:1362: Warning 509: Overloaded method DefaultValues::setTextAnchor(HTextAnchor_t) effectively ignored, /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/DefaultValues.h:1346: Warning 509: as it is shadowed by DefaultValues::setTextAnchor(Text::TEXT_ANCHOR const). /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/DefaultValues.h:1410: Warning 509: Overloaded method DefaultValues::setVTextAnchor(VTextAnchor_t) effectively ignored, /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/DefaultValues.h:1394: Warning 509: as it is shadowed by DefaultValues::setVTextAnchor(Text::TEXT_ANCHOR const). make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 69%] Built target binding_perl_swig make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 69%] Swig Python source cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py --language python --top /builddir/build/BUILD/libsbml-5.20.2 --master /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/libsbml.i --output /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python/pydoc-doxygen.i --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_MULTI --define USE_QUAL --define USE_RENDER cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python/generate-class-name-list.py /builddir/build/BUILD/libsbml-5.20.2/src > /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python/class-list.txt cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python/generate-converters-list.py /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python/class-list.txt > /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python/libsbml-converters.txt cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/doc-converter/rewrite_pydoc.py -f /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python/pydoc-doxygen.i -o /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python/pydoc-normal.i -i /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../../../docs/src/common-text -g /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../../../docs/src/common-graphics Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python && /usr/bin/cmake -E rename pydoc-doxygen.i pydoc.i cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/ -I/builddir/build/BUILD/libsbml-5.20.2/src/bindings/python -I/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/include -DGENERATING_DOCS -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/libsbml.i cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python && /usr/bin/cmake -E rename pydoc.i pydoc-doxygen.i cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python && /usr/bin/cmake -E rename libsbml.py libsbml-doxygen.py cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python && /usr/bin/cmake -E rename pydoc-normal.i pydoc.i cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/ -I/builddir/build/BUILD/libsbml-5.20.2/src/bindings/python -I/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/include -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/libsbml.i cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python && /usr/bin/cmake -E rename pydoc.i pydoc-normal.i cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python" -DVERSION="5.20.2" -P /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/add_version.cmake cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python" -DSRC_DIRECTORY="/builddir/build/BUILD/libsbml-5.20.2/src/bindings/python" -DPYTHON_USE_API2_WARNINGS="OFF" -P /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/patch-python.cmake -- Patching Python wrapper make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:447: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(\s+?)\*/', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:502: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('/\*\*(\s+\*)+', r'/** \n *', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:506: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('\*/', r'* @internal\n */', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:851: SyntaxWarning: invalid escape sequence '\W' p = re.compile('(\W+)(\w+?)::(\w+\s*\([^)]*?\))') /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:994: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@link\s*\*?\s+(\w+)?#(\w+)\s*\*?\s+(\w+)\s*@endlink') /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1010: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^\s*\*\s+@par(\s)', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1015: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(@if|@ifnot)[\s*]+(\w+)[\s*]+(.+?)((@else)\s+(.+?))?@endif', re.DOTALL) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1024: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+)\*\s*$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1026: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^((?!\s+\Z)\s+)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1028: SyntaxWarning: invalid escape sequence '\Z' p = re.compile('^(?!\Z)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1041: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@section\s+[^\s]+\s+(.*)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1043: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@subsection\s+[^\s]+\s+(.*)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1045: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@subsubsection\s+[^\s]+\s+(.*)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1051: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@image\s+html+\s+([^\s]+).*$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1053: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@image\s+latex+\s+([^\s]+).*$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1075: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@c(\n[ \t]*\*[ \t]*)([^ ,;()/*\n\t<]+)', r'\1\2', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1077: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@p(\n[ \t]*\*[ \t]+)([^ ,.:;()/*\n\t<]+)', r'\1\2', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1079: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@em(\n[ \t]*\*[ \t]*)([^ ,.:;()/*\n\t<]+)', r'\1\2', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1085: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+\*\s+)(@li\s+.*?)(\s+)(\*/|

\s+\*\s+(?!@li\s))', re.MULTILINE|re.DOTALL) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1090: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+\*\s+)(@deprecated\s)((\S|\s)+?)(

|\*/)', re.MULTILINE|re.DOTALL) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1111: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+)\*\s+\*\s+@', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1114: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s*)\*\s*

', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1116: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s*)\*?\s*

((\s+\*)+\s+

)+', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1119: SyntaxWarning: invalid escape sequence '\s' p = re.compile('

([\s*]*

)+', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1142: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@ref\s+\*?\s*(\w+)', re.DOTALL) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1227: SyntaxWarning: invalid escape sequence '\s' docstring = re.sub('(@see\s+\w+)::', r'\1#', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1235: SyntaxWarning: invalid escape sequence '\s' docstring = re.sub('(@see\s+)([\w:.]+)\(', r'\1#\2(', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1254: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@link([\s/*]+[\w\s,.:#()*]+[\s/*]*[\w():#]+[\s/*]*)@endlink', re.DOTALL) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1284: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@par(\s)', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1430: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(\s+)(\S+?)::(\w+\s*)(\([^)]*?\))', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1432: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(@see\s+)(\w+\s*)(\([^)]*?\))') /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1452: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^\s+(\S*\s*)', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1456: SyntaxWarning: invalid escape sequence '\S' p = re.compile('^[ \t]+(\S)', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1472: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@c(\n[ \t]*\*[ \t]*)([^ ,.:;()/*\n\t<]+)', r'\1C<\2>', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1474: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@p(\n[ \t]*\*[ \t]+)([^ ,.:;()/*\n\t<]+)', r'\1C<\2>', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1476: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@em(\n[ \t]*\*[ \t]*)([^ ,.:;()/*\n\t<]+)', r'\1I<\2>', docstring) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1743: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@copy(details|doc)\s+(\w+)') /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1755: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@htmlinclude\s+(\*\s+)*([-\w."\']+)', re.DOTALL) #' /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1760: SyntaxWarning: invalid escape sequence '\*' p = re.compile('^([ \t]*\*)[ \t]+\*[ \t]*$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/swigdoc.py:1762: SyntaxWarning: invalid escape sequence '\*' p = re.compile('^([ \t]*\*[ \t]*)\n[ \t]*\*[ \t]*\n[ \t]*\*[ \t]*@li', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python/libsbmlutils.py:134: SyntaxWarning: invalid escape sequence '\s' match = re.search('(@class|@enum)\s+(\w+)', line) /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python/libsbmlutils.py:144: SyntaxWarning: invalid escape sequence '\s' match = re.search('%template\s*\(([^)]+)\)', line) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/doc-converter/rewrite_pydoc.py:539: SyntaxWarning: invalid escape sequence '\(' p = re.compile('(%feature\("docstring"\) \S+ "\n)(.*?)(^";\n\s*)', re.DOTALL|re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/doc-converter/rewrite_pydoc.py:582: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(@if|@ifnot)[\s*]+(\w+)[\s*]+(.+?)((@else)\s+(.+?))?@endif', re.DOTALL) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/doc-converter/rewrite_pydoc.py:601: SyntaxWarning: invalid escape sequence '\w' p = re.compile('@code({[.\w]+?})?(.+?)@endcode\n', re.DOTALL) /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/doc-converter/prettytable.py:74: SyntaxWarning: invalid escape sequence '\[' _re = re.compile("\033\[[0-9;]*m") /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/doc-converter/prettytable.py:800: SyntaxWarning: invalid escape sequence '\{' self.vertical_char = random.choice("~!@#$%^&*()_+|-=\{}[];':\",./;<>?") /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/doc-converter/prettytable.py:801: SyntaxWarning: invalid escape sequence '\{' self.horizontal_char = random.choice("~!@#$%^&*()_+|-=\{}[];':\",./;<>?") /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/doc-converter/prettytable.py:802: SyntaxWarning: invalid escape sequence '\{' self.junction_char = random.choice("~!@#$%^&*()_+|-=\{}[];':\",./;<>?") /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/local.i:870: Warning 404: Duplicate template instantiation of 'ListWrapper< SBMLNamespaces >' with name 'ListWrapperSBMLNamespaces' ignored, /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/libsbml.i:120: Warning 404: previous instantiation of 'ListWrapper< SBMLNamespaces >' with name 'SBMLNamespacesList'. /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/local.i:871: Warning 404: Duplicate template instantiation of 'ListWrapper< CVTerm >' with name 'ListWrapperCVTerm' ignored, /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/libsbml.i:118: Warning 404: previous instantiation of 'ListWrapper< CVTerm >' with name 'CVTermList'. /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/local.i:872: Warning 404: Duplicate template instantiation of 'ListWrapper< Date >' with name 'ListWrapperDate' ignored, /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/libsbml.i:117: Warning 404: previous instantiation of 'ListWrapper< Date >' with name 'DateList'. /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/local.i:873: Warning 404: Duplicate template instantiation of 'ListWrapper< ModelCreator >' with name 'ListWrapperModelCreator' ignored, /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/libsbml.i:116: Warning 404: previous instantiation of 'ListWrapper< ModelCreator >' with name 'ModelCreatorList'. /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/local.i:874: Warning 404: Duplicate template instantiation of 'ListWrapper< SBase >' with name 'ListWrapperSBase' ignored, /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/libsbml.i:121: Warning 404: previous instantiation of 'ListWrapper< SBase >' with name 'SBaseList'. /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' Python: Add Version to generated file make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 69%] Built target binding_python_swig make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/ruby /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/ruby /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 70%] Swig Ruby source cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/ruby && /usr/bin/swig -I/builddir/build/BUILD/libsbml-5.20.2/src/bindings/ruby/../swig/ -I/builddir/build/BUILD/libsbml-5.20.2/src/bindings/ruby -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/include -c++ -ruby -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/ruby/libsbml_wrap.cpp /builddir/build/BUILD/libsbml-5.20.2/src/bindings/ruby/libsbml.i make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/bindings/ruby/../swig/render-package.i:118: Warning 801: Wrong class name (corrected to `Double_array') /builddir/build/BUILD/libsbml-5.20.2/src/bindings/ruby/../swig/render-package.i:118: Warning 801: Wrong class name (corrected to `Double_array') /builddir/build/BUILD/libsbml-5.20.2/src/bindings/ruby/../swig/render-package.i:119: Warning 801: Wrong class name (corrected to `Int_array') /builddir/build/BUILD/libsbml-5.20.2/src/bindings/ruby/../swig/render-package.i:119: Warning 801: Wrong class name (corrected to `Int_array') make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 70%] Built target binding_ruby_swig make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/r /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/CMakeFiles/binding_r_swig.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 70%] Swig: R Bindings cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r" -DBIN_DIRECTORY="/builddir/build/BUILD/libsbml-5.20.2/build" -DCUR_SRC_DIRECTORY="/builddir/build/BUILD/libsbml-5.20.2/src/bindings/r" -DSRC_DIRECTORY="/builddir/build/BUILD/libsbml-5.20.2" -DCMAKE_COMMAND="/usr/bin/cmake" -DPYTHON_EXECUTABLE="/usr/bin/python3" -DSWIG_SWIGDOCDEFINES="" -DSWIG_ARGS="-DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER" -DSWIG_EXECUTABLE="/usr/bin/swig" -DLIBSBML_REMOVE_WRAPPERS=OFF -P /builddir/build/BUILD/libsbml-5.20.2/src/bindings/r/swig-binding.cmake cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r && /usr/bin/cmake -DFILENAME="/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/libSBML.R" -P /builddir/build/BUILD/libsbml-5.20.2/src/bindings/r/patch-swig-file.cmake -- Patched libSBML.R cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r && /usr/bin/cmake -DFILENAME="/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/libsbml_wrap.cpp" -P /builddir/build/BUILD/libsbml-5.20.2/src/bindings/r/patch-swig-file.cmake -- Patched libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/XMLInputStream.h:241: Warning 314: 'next' is a R keyword, renaming to '_next' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 70%] Built target binding_r_swig make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 70%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o -MF CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o.d -o CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/test/TestCheckConsistency.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 71%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o -MF CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o.d -o CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/test/TestExtensionObjects.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 71%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o -MF CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o.d -o CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/test/TestMultipleNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 71%] Building CXX object 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CMakeFiles/sbml.dir/sbml/compress/CompressCommon.cpp.o CMakeFiles/sbml.dir/sbml/compress/InputDecompressor.cpp.o CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o CMakeFiles/sbml.dir/sbml/compress/zfstream.cpp.o CMakeFiles/sbml.dir/sbml/compress/zipfstream.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLAttributes.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLBuffer.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLConstructorException.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLError.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLErrorLog.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLLogOverride.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLFileBuffer.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLHandler.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLInputStream.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLMemoryBuffer.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLNamespaces.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLNode.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLParser.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLToken.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLTokenizer.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLTriple.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLAttributes.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLHandler.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLNamespaces.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLTranscode.cpp.o /usr/lib64/libbz2.so /lib64/libz.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm cd /builddir/build/BUILD/libsbml-5.20.2/build/src && /usr/bin/cmake -E cmake_symlink_library libsbml.so.5.20.2 libsbml.so.5 libsbml.so make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 71%] Built target sbml make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o -MF CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o.d -o CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestAttributeNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o -MF CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o.d -o CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReadWriteSBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o -MF CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o.d -o CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseObjects.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o -MF CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestDeletion.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestDeletion.c:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestDeletion.c: In function ‘void DeletionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestDeletion.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("Deletion_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestDeletion.c: In function ‘void test_comp_deletion_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestDeletion.c:113:10: warning: too many arguments for format [-Wformat-extra-args] 113 | fail("Deletion_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestDeletion.c:123:10: warning: too many arguments for format [-Wformat-extra-args] 123 | fail("Deletion_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestDeletion.c: In function ‘void test_comp_deletion_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestDeletion.c:144:10: warning: too many arguments for format [-Wformat-extra-args] 144 | fail("Deletion_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestDeletion.c:154:10: warning: too many arguments for format [-Wformat-extra-args] 154 | fail("Deletion_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestDeletion.c: In function ‘void test_comp_deletion_metaid_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestDeletion.c:175:10: warning: too many arguments for format [-Wformat-extra-args] 175 | fail("SBase_setMetaId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestDeletion.c:184:10: warning: too many arguments for format [-Wformat-extra-args] 184 | fail("Deletion_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o -MF CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function ‘void ExternalModelDefinitionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("ExternalModelDefinition_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function ‘void test_comp_externalModelDefinition_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:117:10: warning: too many arguments for format [-Wformat-extra-args] 117 | fail("ExternalModelDefinition_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:127:10: warning: too many arguments for format [-Wformat-extra-args] 127 | fail("ExternalModelDefinition_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function ‘void test_comp_externalModelDefinition_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:148:10: warning: too many arguments for format [-Wformat-extra-args] 148 | fail("ExternalModelDefinition_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:158:10: warning: too many arguments for format [-Wformat-extra-args] 158 | fail("ExternalModelDefinition_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function ‘void test_comp_externalModelDefinition_modelRef_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:179:10: warning: too many arguments for format [-Wformat-extra-args] 179 | fail("ExternalModelDefinition_setModelRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:189:10: warning: too many arguments for format [-Wformat-extra-args] 189 | fail("ExternalModelDefinition_unsetModelRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function ‘void test_comp_externalModelDefinition_source_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:210:10: warning: too many arguments for format [-Wformat-extra-args] 210 | fail("ExternalModelDefinition_setSource(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:220:10: warning: too many arguments for format [-Wformat-extra-args] 220 | fail("ExternalModelDefinition_unsetSource(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o -MF CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestModelDefinition.c In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestModelDefinition.c: In function ‘void ModelDefinitionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("ModelDefinition_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestModelDefinition.c: In function ‘void test_comp_modelDefinition_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:108:10: warning: too many arguments for format [-Wformat-extra-args] 108 | fail("Model_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:117:10: warning: too many arguments for format [-Wformat-extra-args] 117 | fail("Model_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestModelDefinition.c: In function ‘void test_comp_modelDefinition_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("Model_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:147:10: warning: too many arguments for format [-Wformat-extra-args] 147 | fail("Model_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestPort.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestPort.c.o -MF CMakeFiles/test_comp_sbase.dir/TestPort.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestPort.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestPort.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestPort.c:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestPort.c: In function ‘void PortTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestPort.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("Port_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestPort.c: In function ‘void test_comp_port_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestPort.c:113:10: warning: too many arguments for format [-Wformat-extra-args] 113 | fail("Port_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestPort.c:123:10: warning: too many arguments for format [-Wformat-extra-args] 123 | fail("Port_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestPort.c: In function ‘void test_comp_port_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestPort.c:144:10: warning: too many arguments for format [-Wformat-extra-args] 144 | fail("Port_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestPort.c:154:10: warning: too many arguments for format [-Wformat-extra-args] 154 | fail("Port_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o -MF CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedBy.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedBy.c: In function ‘void ReplacedByTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("ReplacedBy_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedBy.c: In function ‘void test_comp_replacedBy_submodelRef_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:111:10: warning: too many arguments for format [-Wformat-extra-args] 111 | fail("ReplacedBy_setSubmodelRef(...) submodelRef not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:121:10: warning: too many arguments for format [-Wformat-extra-args] 121 | fail("ReplacedBy_unsetSubmodelRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o -MF CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedElement.c In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedElement.c: In function ‘void ReplacedElementTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("ReplacedElement_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedElement.c: In function ‘void test_comp_replacedElement_submodelRef_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:115:10: warning: too many arguments for format [-Wformat-extra-args] 115 | fail("ReplacedElement_setSubmodelRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:125:10: warning: too many arguments for format [-Wformat-extra-args] 125 | fail("ReplacedElement_unsetSubmodelRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedElement.c: In function ‘void test_comp_replacedElement_deletion_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:146:10: warning: too many arguments for format [-Wformat-extra-args] 146 | fail("ReplacedElement_setDeletion(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:156:10: warning: too many arguments for format [-Wformat-extra-args] 156 | fail("ReplacedElement_unsetDeletion(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedElement.c: In function ‘void test_comp_replacedElement_conversionFactor_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:177:10: warning: too many arguments for format [-Wformat-extra-args] 177 | fail("ReplacedElement_setConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:187:10: warning: too many arguments for format [-Wformat-extra-args] 187 | fail("ReplacedElement_unsetConversionFactor(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 72%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestRunner.c.o -MF CMakeFiles/test_comp_sbase.dir/TestRunner.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 72%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o -MF CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function ‘void SBaseRefTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("SBaseRef_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function ‘void test_comp_sBaseRef_idRef_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:119:10: warning: too many arguments for format [-Wformat-extra-args] 119 | fail("SBaseRef_setIdRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:129:10: warning: too many arguments for format [-Wformat-extra-args] 129 | fail("SBaseRef_unsetIdRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function ‘void test_comp_sBaseRef_unitRef_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:150:10: warning: too many arguments for format [-Wformat-extra-args] 150 | fail("SBaseRef_setUnitRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:160:10: warning: too many arguments for format [-Wformat-extra-args] 160 | fail("SBaseRef_unsetUnitRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function ‘void test_comp_sBaseRef_metaIdRef_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:181:10: warning: too many arguments for format [-Wformat-extra-args] 181 | fail("SBaseRef_setMetaIdRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:191:10: warning: too many arguments for format [-Wformat-extra-args] 191 | fail("SBaseRef_unsetMetaIdRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function ‘void test_comp_sBaseRef_portRef_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:212:10: warning: too many arguments for format [-Wformat-extra-args] 212 | fail("SBaseRef_setPortRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:222:10: warning: too many arguments for format [-Wformat-extra-args] 222 | fail("SBaseRef_unsetPortRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function ‘void test_comp_sBaseRef_sBaseRef_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:242:10: warning: too many arguments for format [-Wformat-extra-args] 242 | fail("SBaseRef_setSBaseRef(...) did not make a copy of the SBaseRef_t."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:251:10: warning: too many arguments for format [-Wformat-extra-args] 251 | fail("SBaseRef_unsetSBaseRef(P) did not clear the SBaseRef_t."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 72%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -MF CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c:44: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void SubmodelTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c:65:10: warning: too many arguments for format [-Wformat-extra-args] 65 | fail("Submodel_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void test_comp_submodel_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c:125:10: warning: too many arguments for format [-Wformat-extra-args] 125 | fail("Submodel_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c:135:10: warning: too many arguments for format [-Wformat-extra-args] 135 | fail("Submodel_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void test_comp_submodel_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c:156:10: warning: too many arguments for format [-Wformat-extra-args] 156 | fail("Submodel_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c:166:10: warning: too many arguments for format [-Wformat-extra-args] 166 | fail("Submodel_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void test_comp_submodel_modelRef_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c:187:10: warning: too many arguments for format [-Wformat-extra-args] 187 | fail("Submodel_setModelRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c:197:10: warning: too many arguments for format [-Wformat-extra-args] 197 | fail("Submodel_unsetModelRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void test_comp_submodel_timeConversionFactor_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c:235:10: warning: too many arguments for format [-Wformat-extra-args] 235 | fail("Submodel_setTimeConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c:245:10: warning: too many arguments for format [-Wformat-extra-args] 245 | fail("Submodel_unsetTimeConversionFactor(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void test_comp_submodel_extentConversionFactor_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c:266:10: warning: too many arguments for format [-Wformat-extra-args] 266 | fail("Submodel_setExtentConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c:276:10: warning: too many arguments for format [-Wformat-extra-args] 276 | fail("Submodel_unsetExtentConversionFactor(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void test_comp_submodel_deletion_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test/TestSubmodel.c:299:10: warning: too many arguments for format [-Wformat-extra-args] 299 | fail("Submodel_addDeletion(...) did not make a copy of the deletion."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 71%] Linking CXX executable test_comp_extensions cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_extensions.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o CMakeFiles/test_comp_extensions.dir/TestRunner.c.o -o test_comp_extensions ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 72%] Built target test_comp_extensions make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/util/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o -MF CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util/test/TestCompFlatteningConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o -MF CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util/test/TestCompFlatteningConverterStripPackage.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o -MF CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util/test/TestCompFlatteningErrorMessages.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o -MF CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util/test/TestCompFlatteningNewFlags.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o -MF CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util/test/TestCompFlatteningUnknownPackageRefs.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o -MF CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util/test/TestCompLevelVersionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o -MF CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util/test/TestExternalModelResolving.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestRunner.c.o -MF CMakeFiles/test_comp_util.dir/TestRunner.c.o.d -o CMakeFiles/test_comp_util.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 72%] Linking CXX executable test_comp_sbase cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_sbase.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o CMakeFiles/test_comp_sbase.dir/TestPort.c.o CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o CMakeFiles/test_comp_sbase.dir/TestRunner.c.o CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -o test_comp_sbase ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Built target test_comp_sbase make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o -MF CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o.d -o CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/test/TestCompConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_comp_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_comp_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Linking CXX executable test_comp_util cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/util/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_util.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o CMakeFiles/test_comp_util.dir/TestRunner.c.o -o test_comp_util ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Built target test_comp_util make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o -MF CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o.d -o CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp:13: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp: In function ‘void FbcAssociationTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp:60:10: warning: too many arguments for format [-Wformat-extra-args] 60 | fail("Failed to create a FbcAssociation object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o -MF CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o.d -o CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp:13: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp: In function ‘void FbcExtensionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp:53:10: warning: too many arguments for format [-Wformat-extra-args] 53 | fail("Failed to create a FbcExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o -MF CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o.d -o CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/test/TestReadFbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o -MF CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o.d -o CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp:10: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp: In function ‘void WriteFbcExtensionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp:46:10: warning: too many arguments for format [-Wformat-extra-args] 46 | fail("Failed to create a FbcExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Linking CXX executable test_comp_validator cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o CMakeFiles/test_comp_validator.dir/TestFile.cpp.o CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -o test_comp_validator ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Built target test_comp_validator make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o -MF CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o.d -o CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/test/TestFbcConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Linking CXX executable test_sbml_package_fbc cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_fbc.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -o test_sbml_package_fbc ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Built target test_sbml_package_fbc make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o -MF CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o.d -o CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp:39: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp: In function ‘void GroupsExtensionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp:75:10: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("Failed to create a GroupsExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o -MF CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o.d -o CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/test/TestGroupsModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD 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-I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o -MF CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o.d -o CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp:40: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp: In function ‘void WriteGroupsExtensionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp:72:22: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("Failed to create a GroupsExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o -MF CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o.d -o CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Linking CXX executable test_fbc_validator cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_fbc_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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-mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o -MF CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o.d -o CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/test/TestGroupsConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/groups/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Linking CXX executable test_extension_package_groups cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/groups/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_groups.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o -o test_extension_package_groups ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Built target test_extension_package_groups make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build.make src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/validator/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build.make src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Building CXX object src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Building CXX object src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o -MF CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o.d -o CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/test/TestL3v2MathConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Building CXX object src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_l3v2extendedmath_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_l3v2extendedmath_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Linking CXX executable test_groups_validator cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/groups/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_groups_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_groups_validator.dir/TestFile.cpp.o CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o -o test_groups_validator ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Built target test_groups_validator make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build.make src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/extension/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build.make src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestL3v2EMExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestL3v2EMExtension.cpp.o -MF CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestL3v2EMExtension.cpp.o.d -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestL3v2EMExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/test/TestL3v2EMExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/test/TestL3v2EMExtension.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/test/TestL3v2EMExtension.cpp: In function ‘void L3v2EMExtensionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/test/TestL3v2EMExtension.cpp:81:10: warning: too many arguments for format [-Wformat-extra-args] 81 | fail("Failed to create a L3v2extendedmathExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 75%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o -MF CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o.d -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/test/TestReadL3v2EMExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 75%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadWriteInfix.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadWriteInfix.cpp.o -MF CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadWriteInfix.cpp.o.d -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadWriteInfix.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/test/TestReadWriteInfix.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 75%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o -MF CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o.d -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp: In function ‘void WriteL3v2EMExtensionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:81:10: warning: too many arguments for format [-Wformat-extra-args] 81 | fail("Failed to create a L3v2extendedmathExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 75%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o -MF CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o.d -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Linking CXX executable test_l3v2extendedmath_validator cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_l3v2extendedmath_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o CMakeFiles/test_l3v2extendedmath_validator.dir/TestValidator.cpp.o -o test_l3v2extendedmath_validator ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 75%] Built target test_l3v2extendedmath_validator make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp: In function ‘void BoundingBoxTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp:60:10: warning: too many arguments for format [-Wformat-extra-args] 60 | fail("BoundingBox(); returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp:47: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp: In function ‘void CompartmentGlyphTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("new(std::nothrow) CompartmentGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp:47: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp: In function ‘void CubicBezierTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("CubicBezier_create(); returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestCurve.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestCurve.cpp: In function ‘void CurveTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestCurve.cpp:60:10: warning: too many arguments for format [-Wformat-extra-args] 60 | fail("Curve_create(); returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestDimensions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestDimensions.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestDimensions.cpp: In function ‘void DimensionsTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestDimensions.cpp:62:10: warning: too many arguments for format [-Wformat-extra-args] 62 | fail("new(std::nothrow)Dimensions() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp:52: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp: In function ‘void GeneralGlyphTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("new(std::nothrow) GeneralGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp:52: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp: In function ‘void GraphicalObjectTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp:71:10: warning: too many arguments for format [-Wformat-extra-args] 71 | fail("new (std::nothrow) GraphicalObject returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestLayout.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestLayout.cpp:51: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestLayout.cpp: In function ‘void LayoutTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestLayout.cpp:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("new(std::nothrow) Layout() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestLayoutCreation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestLayoutFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestLayoutWriting.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp:47: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp: In function ‘void LineSegmentTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("LineSegment_create(); returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestPoint.cpp:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestPoint.cpp: In function ‘void PointTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestPoint.cpp:62:10: warning: too many arguments for format [-Wformat-extra-args] 62 | fail("new(std::nothrow) Point() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestPoint.cpp: In function ‘void test_Point_createWithCoordinates_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestPoint.cpp:91:10: warning: too many arguments for format [-Wformat-extra-args] 91 | fail("new(std::nothrow) Point(1.2,0.4,3.1415) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp:52: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp: In function ‘void ReactionGlyphTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("new(std::nothrow) ReactionGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp:51: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp: In function ‘void ReferenceGlyphTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("new(std::nothrow) ReferenceGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestSBMLHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp:48: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp: In function ‘void SpeciesGlyphTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp:66:10: warning: too many arguments for format [-Wformat-extra-args] 66 | fail("new(std::nothrow) SpeciesGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp:51: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp: In function ‘void SpeciesReferenceGlyphTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("new(std::nothrow) SpeciesReferenceGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp: In function ‘void TextGlyphTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp:57:10: warning: too many arguments for format [-Wformat-extra-args] 57 | fail("new(std::nothrow) TextGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 75%] Linking CXX executable test_extension_package_l3v2extendedmath cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_l3v2extendedmath.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestL3v2EMExtension.cpp.o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadWriteInfix.cpp.o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o -o test_extension_package_l3v2extendedmath ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 77%] Built target test_extension_package_l3v2extendedmath make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 77%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_layout_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_layout_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 77%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o -MF CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o.d -o CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/validator/test/TestLayoutConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Linking CXX executable test_layout_validator cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_layout_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_layout_validator.dir/TestFile.cpp.o CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -o test_layout_validator ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Built target test_layout_validator make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o -MF CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o.d -o CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/test/TestCheckConsistency.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 77%] Linking CXX executable test_sbml_package_layout cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_layout.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -o test_sbml_package_layout ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Built target test_sbml_package_layout make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o -MF CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o.d -o CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/test/TestMultiAST.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o -MF CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o.d -o CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp:13: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp: In function ‘void MultiExtensionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp:52:10: warning: too many arguments for format [-Wformat-extra-args] 52 | fail("Failed to create a MultiExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_multi_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_multi_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o -MF CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o.d -o CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/test/TestMultiConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Linking CXX executable test_sbml_package_multi cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_multi.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o -o test_sbml_package_multi ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Built target test_sbml_package_multi make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o -MF CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o.d -o CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/test/TestGetAllElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Linking CXX executable test_multi_validator cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_multi_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_multi_validator.dir/TestFile.cpp.o CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o -o test_multi_validator ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Built target test_multi_validator make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o -MF CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o.d -o CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/test/TestQualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/test/TestQualExtension.cpp:48: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/test/TestQualExtension.cpp: In function ‘void QualExtensionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/test/TestQualExtension.cpp:84:10: warning: too many arguments for format [-Wformat-extra-args] 84 | fail("Failed to create a QualExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o -MF CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o.d -o CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/test/TestReadQualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp:48: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp: In function ‘void DefaultTermTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp:77:10: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("Failed to create a DefaultTerm object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp:48: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp: In function ‘void FunctionTermTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp:78:10: warning: too many arguments for format [-Wformat-extra-args] 78 | fail("Failed to create a FunctionTerm object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o -MF CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o.d -o CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp: In function ‘void WriteQualExtensionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp:82:22: warning: too many arguments for format [-Wformat-extra-args] 82 | fail("Failed to create a QualExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -MF CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o.d -o CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestInput.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestInput.cpp:48: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestInput.cpp: In function ‘void InputTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestInput.cpp:76:10: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("Failed to create a Input object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp:48: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp: In function ‘void ListOfFunctionTermsTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp:77:10: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("Failed to create a ListOfFunctionTerms object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestOutput.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestOutput.cpp:48: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestOutput.cpp: In function ‘void OutputTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestOutput.cpp:76:10: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("Failed to create a Output object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp:48: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp: In function ‘void QualitativeSpeciesTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp:76:10: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("Failed to create a QualitativeSpecies object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestTransition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestTransition.cpp:48: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestTransition.cpp: In function ‘void TransitionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestTransition.cpp:76:10: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("Failed to create a Transition object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Linking CXX executable test_extension_package_qual cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_qual.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -o test_extension_package_qual ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Built target test_extension_package_qual make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_qual_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_qual_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o -MF CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o.d -o CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/test/TestQualConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Linking CXX executable test_sbml_package_qual cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_qual.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -o test_sbml_package_qual ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Built target test_sbml_package_qual make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp:55: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp: In function ‘void ColorDefinitionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)ColorDefinition(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestEllipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestEllipse.cpp:54: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestEllipse.cpp: In function ‘void EllipseTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestEllipse.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Ellipse(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp:56: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp: In function ‘void GlobalRenderInformationTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp:76:14: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("new(std::nothrow)GlobalRenderInformation(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp:57: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp: In function ‘void GlobalStyleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp:77:14: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("new(std::nothrow)GlobalStyle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGradientBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGradientBase.cpp:55: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGradientBase.cpp: In function ‘void GradientBaseTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGradientBase.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)LinearGradient(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGradientStop.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGradientStop.cpp:54: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGradientStop.cpp: In function ‘void GradientStop_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGradientStop.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)GradientStop(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp:55: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp: In function ‘void GraphicalPrimitive1DTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)Text(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp:55: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp: In function ‘void GraphicalPrimitive2DTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)Rectangle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGroup.cpp:54: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGroup.cpp: In function ‘void GroupTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestGroup.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Group(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestImage.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestImage.cpp:54: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestImage.cpp: In function ‘void ImageTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestImage.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Image(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestLineEnding.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestLineEnding.cpp:53: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestLineEnding.cpp: In function ‘void LineEndingTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestLineEnding.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)LineEnding(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp:54: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp: In function ‘void LinearGradientTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)LinearGradient(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp:56: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp: In function ‘void LocalRenderInformationTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp:76:14: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("new(std::nothrow)LocalRenderInformation(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp:57: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp: In function ‘void LocalStyleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp:77:14: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("new(std::nothrow)LocalStyle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestPolygon.cpp In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestPolygon.cpp:54: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestPolygon.cpp: In function ‘void PolygonTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestPolygon.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Polygon(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp:54: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp: In function ‘void RadialGradientTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)RadialGradient(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRectangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRectangle.cpp:54: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRectangle.cpp: In function ‘void RectangleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRectangle.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Rectangle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp:53: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp: In function ‘void RelAbsVectorTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp:72:14: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("new(std::nothrow)RelAbsVector() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp:55: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp: In function ‘void RenderCubicBezierTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)RenderCubicBezier(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp:52: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp: In function ‘void RenderCurveTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp:72:14: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("new(std::nothrow)RenderCurve(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp:55: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp: In function ‘void RenderInformationBaseTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)GlobalRenderInformation(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp:54: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp: In function ‘void RenderPointTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)RenderPoint(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderReading.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestStyle.cpp:54: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestStyle.cpp: In function ‘void StyleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestStyle.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)LocalStyle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestText.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestText.cpp:54: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestText.cpp: In function ‘void TextTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestText.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Text(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestTransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestTransformation.cpp:51: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestTransformation.cpp: In function ‘void TransformationTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestTransformation.cpp:69:14: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("new(std::nothrow)Text(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp:54: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp: In function ‘void Transformation2DTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Text(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 79%] Linking CXX executable test_qual_validator cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_qual_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_qual_validator.dir/TestFile.cpp.o CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -o test_qual_validator ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 82%] Built target test_qual_validator make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/validator/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 82%] Building CXX object src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_render_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_render_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 82%] Building CXX object src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o -MF CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o.d -o CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/test/TestRenderConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 82%] Building CXX object src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_render_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_render_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 83%] Linking CXX executable test_render_validator cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_render_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_render_validator.dir/TestFile.cpp.o CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o CMakeFiles/test_render_validator.dir/TestValidator.cpp.o -o test_render_validator ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 83%] Built target test_render_validator make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 83%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test && /usr/bin/g++ 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 83%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test/TestL3ModelHistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 83%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test/TestRDFAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 83%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test/TestRDFAnnotation2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test/TestRDFAnnotation2.cpp:55: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test/TestRDFAnnotation2.cpp: In function ‘void test_RDFAnnotation2_modelWithHistoryAndCVTerms_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test/TestRDFAnnotation2.cpp:225:10: warning: too many arguments for format [-Wformat-extra-args] 225 | fail("parseModelHistory failed"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 83%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test/TestRDFAnnotationMetaid.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 83%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints 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-Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test/TestRDFAnnotationNestedCVTerms.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 83%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp:55: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp: In function ‘void test_RDFAnnotationV4_modelWithHistoryAndCVTerms_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp:232:10: warning: too many arguments for format [-Wformat-extra-args] 232 | fail("parseModelHistory failed"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp: In function ‘void test_RDFAnnotationV4_modelWithHistoryAndCVTerms_31_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp:478:10: warning: too many arguments for format [-Wformat-extra-args] 478 | fail("parseModelHistory failed"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 82%] Linking CXX executable test_sbml_package_render cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_render.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o -o test_sbml_package_render ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 83%] Built target test_sbml_package_render make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 83%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestUnusualRDFAnnotation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestUnusualRDFAnnotation.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestUnusualRDFAnnotation.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestUnusualRDFAnnotation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test/TestUnusualRDFAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 83%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test && /usr/bin/g++ 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test/TestSyncAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/conversion/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 83%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test/TestValidation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 83%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/test/TestConversionOption.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 83%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o -MF 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Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/test/TestRateOfConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 85%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o -MF 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make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 85%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/test/TestSBMLRuleConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 85%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/test/TestStripPackageConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 85%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src 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CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/test/TestUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 85%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/test/TestUnitsConverter2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 85%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/test/TestUnitsConverterL2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 85%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 84%] Linking CXX executable test_sbml_annotation cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_annotation.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestUnusualRDFAnnotation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o -o test_sbml_annotation ../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 85%] Built target test_sbml_annotation make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/extension/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 85%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/test/TestPackage.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 85%] Building C object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/extension/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 86%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/test/TestSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 86%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT 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src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/test/TestSBasePluginCreator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 86%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/test/TestSBasePluginCreatorBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 86%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/test/TestUnknownPackage.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 85%] Linking CXX executable test_sbml_conversion cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/conversion/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_conversion.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o CMakeFiles/test_sbml_conversion.dir/TestSBMLRateRuleConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o -o test_sbml_conversion ../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 86%] Built target test_sbml_conversion make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/math/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/math/test/CMakeFiles/test_sbml_math.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestChildFunctions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestDerivativeFunctions.cpp.o cd 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestL3FormulaParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestReadFromFile1.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestReadFromFile1.cpp:53: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestReadFromFile1.cpp: In function ‘void test_read_MathML_1_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestReadFromFile1.cpp:103:10: warning: too many arguments for format [-Wformat-extra-args] 103 | fail("readSBML(\"mathML_1-invalid.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestReadFromFile2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestReadFromFile2.cpp:54: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestReadFromFile2.cpp: In function ‘void test_read_MathML_2_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestReadFromFile2.cpp:83:10: warning: too many arguments for format [-Wformat-extra-args] 83 | fail("readSBML(\"mathML_2-invalid.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestReadFromFileL3V2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestReadFromFileL3V2.cpp:54: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestReadFromFileL3V2.cpp: In function ‘void test_read_MathML_L3V2_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestReadFromFileL3V2.cpp:96:10: warning: too many arguments for format [-Wformat-extra-args] 96 | fail("readSBML(\"L3V2Math.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestReadMathML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestValidASTNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestWriteMathML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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-Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestWriteMathMLFromAST.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestASTNode.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestASTNode.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestASTNode.c:55: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestASTNode.c: In function ‘void test_ASTNode_setName_1_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestASTNode.c:1513:10: warning: too many arguments for format [-Wformat-extra-args] 1513 | fail("ASTNode_setName(...) did not make a copy of name."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestASTNode.c:1521:10: warning: too many arguments for format [-Wformat-extra-args] 1521 | fail("ASTNode_setName(node, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o -MF CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o.d -o CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestFormulaFormatter.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_math.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_math.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 86%] Linking CXX executable test_sbml_extension cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_extension.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o CMakeFiles/test_sbml_extension.dir/TestRunner.c.o CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -o test_sbml_extension ../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 88%] Built target test_sbml_extension make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestAncestor.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestAttributeFunctions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestAttributeFunctions.cpp:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestAttributeFunctions.cpp: In function ‘void AttributeTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestAttributeFunctions.cpp:77:10: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConsistencyChecks.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConsistencyChecks.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConsistencyChecks.cpp: In function ‘void test_consistency_checks_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConsistencyChecks.cpp:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("readSBML(\"inconsistent.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConsistencyChecks.cpp: In function ‘void test_strict_unit_consistency_checks_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConsistencyChecks.cpp:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("readSBML(\"l3v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestGetMultipleObjects.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestGetMultipleObjects.cpp:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_getId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestGetMultipleObjects.cpp:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_getMetaId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestGetMultipleObjects.cpp:169:10: warning: too many arguments for format [-Wformat-extra-args] 169 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_noLocalParameters_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestGetMultipleObjects.cpp:350:10: warning: too many arguments for format [-Wformat-extra-args] 350 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_noUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestGetMultipleObjects.cpp:380:10: warning: too many arguments for format [-Wformat-extra-args] 380 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_noAssignments_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestGetMultipleObjects.cpp:408:10: warning: too many arguments for format [-Wformat-extra-args] 408 | fail("readSBML(\"assignments-invalid.xml\") returned an empty model."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_allElements_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestGetMultipleObjects.cpp:454:10: warning: too many arguments for format [-Wformat-extra-args] 454 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_withFilter_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestGetMultipleObjects.cpp:490:10: warning: too many arguments for format [-Wformat-extra-args] 490 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestInternalConsistencyChecks.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestLevelCompatibility.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestLevelCompatibility.cpp:48: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestLevelCompatibility.cpp: In function ‘void test_LevelCompatibility_unit_fails_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestLevelCompatibility.cpp:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("readSBML(\"inconsistent-l2v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestLevelCompatibility.cpp: In function ‘void test_LevelCompatibility_unit_warnings_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestLevelCompatibility.cpp:107:10: warning: too many arguments for format [-Wformat-extra-args] 107 | fail("readSBML(\"inconsistent-l2v1-units-2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestLevelCompatibility.cpp: In function ‘void test_LevelCompatibility_unit_fails_l1_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestLevelCompatibility.cpp:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("readSBML(\"inconsistent-l2v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestLevelCompatibility.cpp: In function ‘void test_LevelCompatibility_unit_warnings_l1_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestLevelCompatibility.cpp:172:10: warning: too many arguments for format [-Wformat-extra-args] 172 | fail("readSBML(\"inconsistent-l2v1-units-2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestLevelCompatibility.cpp: In function ‘void test_LevelCompatibility_unit_fails_l2v2_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestLevelCompatibility.cpp:203:10: warning: too many arguments for format [-Wformat-extra-args] 203 | fail("readSBML(\"inconsistent-l2v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestLevelCompatibility.cpp: In function ‘void test_LevelCompatibility_unit_fails_l2v3_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestLevelCompatibility.cpp:237:10: warning: too many arguments for format [-Wformat-extra-args] 237 | fail("readSBML(\"inconsistent-l2v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile5.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile5.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile5.cpp: In function ‘void test_read_l2v1_assignment_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile5.cpp:91:10: warning: too many arguments for format [-Wformat-extra-args] 91 | fail("readSBML(\"l2v1-assignment.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile6.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile6.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile6.cpp: In function ‘void test_read_l2v2_newComponents_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile6.cpp:96:10: warning: too many arguments for format [-Wformat-extra-args] 96 | fail("readSBML(\"l2v2-newComponents.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile7.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile7.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile7.cpp: In function ‘void test_read_l2v3_all_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile7.cpp:111:10: warning: too many arguments for format [-Wformat-extra-args] 111 | fail("readSBML(\"l2v3-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile8.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile8.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile8.cpp: In function ‘void test_read_exploit_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile8.cpp:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("readSBML(\"exploit.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile8.cpp: In function ‘void test_read_l2v4_new_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile8.cpp:105:10: warning: too many arguments for format [-Wformat-extra-args] 105 | fail("readSBML(\"l2v4-new.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile9.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile9.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile9.cpp: In function ‘void test_read_l3v1_new_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile9.cpp:87:10: warning: too many arguments for format [-Wformat-extra-args] 87 | fail("readSBML(\"l3v1-new-invalid.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL2V5.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL2V5.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL2V5.cpp: In function ‘void test_read_l2v5_all_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL2V5.cpp:111:10: warning: too many arguments for format [-Wformat-extra-args] 111 | fail("readSBML(\"l2v5-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL2V5.cpp: In function ‘void test_echo_l2v5_all_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL2V5.cpp:590:10: warning: too many arguments for format [-Wformat-extra-args] 590 | fail("readSBML(\"l2v5-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2.cpp: In function ‘void test_read_l3v2_all_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2.cpp:102:10: warning: too many arguments for format [-Wformat-extra-args] 102 | fail("readSBML(\"l3v2-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2.cpp: In function ‘void test_echo_l3v2_all_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2.cpp:585:10: warning: too many arguments for format [-Wformat-extra-args] 585 | fail("readSBML(\"l3v2-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_1.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_1.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_1.cpp: In function ‘void test_read_l3v2_no_model_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_1.cpp:87:10: warning: too many arguments for format [-Wformat-extra-args] 87 | fail("readSBML(\"l3v2-no-model.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_1.cpp: In function ‘void test_echo_l3v2_no_model_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_1.cpp:124:10: warning: too many arguments for format [-Wformat-extra-args] 124 | fail("readSBML(\"l3v2-no-model.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_2.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_2.cpp: In function ‘void test_read_l3v2_empty_lo_1_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_2.cpp:85:10: warning: too many arguments for format [-Wformat-extra-args] 85 | fail("readSBML(\"l3v2-empty-lo-1.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_2.cpp: In function ‘void test_echo_l3v2_empty_lo_1_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_2.cpp:209:10: warning: too many arguments for format [-Wformat-extra-args] 209 | fail("readSBML(\"l3v2-empty-lo-1.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_2.cpp: In function ‘void test_echo_l3v2_empty_lo_3_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_2.cpp:330:10: warning: too many arguments for format [-Wformat-extra-args] 330 | fail("readSBML(\"l3v2-empty-lo-3.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_3.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_3.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_3.cpp: In function ‘void test_read_l3v2_empty_lo_2_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_3.cpp:86:10: warning: too many arguments for format [-Wformat-extra-args] 86 | fail("readSBML(\"l3v2-empty-lo-2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_3.cpp: In function ‘void test_echo_l3v2_empty_lo_2_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_3.cpp:245:10: warning: too many arguments for format [-Wformat-extra-args] 245 | fail("readSBML(\"l3v2-empty-lo-2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_4.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_4.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_4.cpp: In function ‘void test_read_l3v2_empty_math_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_4.cpp:86:10: warning: too many arguments for format [-Wformat-extra-args] 86 | fail("readSBML(\"l3v2-empty-lo-3.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_4.cpp: In function ‘void test_echo_l3v2_empty_math_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_4.cpp:180:10: warning: too many arguments for format [-Wformat-extra-args] 180 | fail("readSBML(\"l3v2-empty-math.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_5.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_5.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_5.cpp: In function ‘void test_read_l3v2_empty_event_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_5.cpp:86:10: warning: too many arguments for format [-Wformat-extra-args] 86 | fail("readSBML(\"l3v2-empty-event.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_5.cpp: In function ‘void test_echo_l3v2_empty_event_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_5.cpp:173:10: warning: too many arguments for format [-Wformat-extra-args] 173 | fail("readSBML(\"l3v2-empty-event.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_6.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_6.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_6.cpp: In function ‘void test_read_l3v2_empty_event2_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_6.cpp:86:10: warning: too many arguments for format [-Wformat-extra-args] 86 | fail("readSBML(\"l3v2-empty-event2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_6.cpp: In function ‘void test_echo_l3v2_empty_event2_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFileL3V2_6.cpp:150:10: warning: too many arguments for format [-Wformat-extra-args] 150 | fail("readSBML(\"l3v2-empty-event2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadSBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRemoveFromParent.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRemoveFromParent.cpp:48: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRemoveFromParent.cpp: In function ‘void test_RemoveFromParent_successfulRemoves_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRemoveFromParent.cpp:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRemoveFromParent.cpp: In function ‘void test_RemoveFromParent_alreadyRemoved_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRemoveFromParent.cpp:338:10: warning: too many arguments for format [-Wformat-extra-args] 338 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRenameIDs.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRenameIDs.cpp:48: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRenameIDs.cpp: In function ‘void test_RenameIDs_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRenameIDs.cpp:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRequiredAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension 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src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConstructorException.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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/builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLError.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLError.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLError.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLError.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 88%] Linking CXX executable test_sbml_math cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/math/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_math.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o CMakeFiles/test_sbml_math.dir/TestDerivativeFunctions.cpp.o CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o CMakeFiles/test_sbml_math.dir/TestInferRnFunctions.cpp.o CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o CMakeFiles/test_sbml_math.dir/TestASTNode.c.o CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o CMakeFiles/test_sbml_math.dir/TestRunner.c.o -o test_sbml_math ../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 90%] Built target test_sbml_math make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/units/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/units/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/units/test/CMakeFiles/test_sbml_units.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o cd 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src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 90%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/units/test/TestCalculatedUnitDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLParentObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 90%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/units/test/TestDerivedUnitDefinitions_undefined.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLTransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLTransforms.cpp:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLTransforms.cpp: In function ‘void test_SBMLTransforms_replaceFD_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLTransforms.cpp:79:10: warning: too many arguments for format [-Wformat-extra-args] 79 | fail("readSBML(\"multiple-functions.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLTransforms.cpp: In function ‘void test_SBMLTransforms_replaceIA_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLTransforms.cpp:613:10: warning: too many arguments for format [-Wformat-extra-args] 613 | fail("readSBML(\"initialAssignments.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLTransforms.cpp: In function ‘void test_SBMLTransforms_replaceIA_species_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLTransforms.cpp:767:10: warning: too many arguments for format [-Wformat-extra-args] 767 | fail("readSBML(\"initialAssignments_species.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLTransforms.cpp: In function ‘void test_SBMLTransforms_evaluateL3V2ASTWithModel_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLTransforms.cpp:837:10: warning: too many arguments for format [-Wformat-extra-args] 837 | fail("readSBML(\"multiple-functions.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLTransforms.cpp: In function ‘void test_SBMLTransforms_replaceIAWithFD_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLTransforms.cpp:874:10: warning: too many arguments for format [-Wformat-extra-args] 874 | fail("readSBML(\"initialAssignments.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 91%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o cd 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-Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/units/test/TestFormulaUnitsData.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLValidators.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 91%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/units/test/TestFormulaUnitsData_map.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp:54: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp: In function ‘void SBaseTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp:80:10: warning: too many arguments for format [-Wformat-extra-args] 80 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp: In function ‘void test_SBase_setMetaId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp:105:10: warning: too many arguments for format [-Wformat-extra-args] 105 | fail("SBase_setMetaId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp:117:10: warning: too many arguments for format [-Wformat-extra-args] 117 | fail("SBase_setMetaId(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp: In function ‘void test_SBase_setNotes_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp:136:10: warning: too many arguments for format [-Wformat-extra-args] 136 | fail("SBase_setNotes(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp:156:10: warning: too many arguments for format [-Wformat-extra-args] 156 | fail("SBase_setNotes(c, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp: In function ‘void test_SBase_setAnnotation_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp:222:10: warning: too many arguments for format [-Wformat-extra-args] 222 | fail("SBase_setAnnotation(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp:234:10: warning: too many arguments for format [-Wformat-extra-args] 234 | fail("SBase_setAnnotation(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp: In function ‘void test_SBase_setNotesString_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp:442:10: warning: too many arguments for format [-Wformat-extra-args] 442 | fail("SBase_setNotesString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp:467:10: warning: too many arguments for format [-Wformat-extra-args] 467 | fail("SBase_getNotesString(c, "") did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp:477:10: warning: too many arguments for format [-Wformat-extra-args] 477 | fail("SBase_setNotesString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp: In function ‘void test_SBase_setNotesString_l3_addMarkup_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp:518:10: warning: too many arguments for format [-Wformat-extra-args] 518 | fail("SBase_setNotesString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp:538:10: warning: too many arguments for format [-Wformat-extra-args] 538 | fail("SBase_setNotesString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp: In function ‘void test_SBase_setAnnotationString_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp:567:10: warning: too many arguments for format [-Wformat-extra-args] 567 | fail("SBase_setAnnotationString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp:591:10: warning: too many arguments for format [-Wformat-extra-args] 591 | fail("SBase_getAnnotationString(S, "") did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase.cpp:601:10: warning: too many arguments for format [-Wformat-extra-args] 601 | fail("SBase_setAnnotationString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 91%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/units/test/TestUnitFormulaFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:55: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp: In function ‘void SBaseIdNameTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:90:10: warning: too many arguments for format [-Wformat-extra-args] 90 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:97:10: warning: too many arguments for format [-Wformat-extra-args] 97 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:104:10: warning: too many arguments for format [-Wformat-extra-args] 104 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:111:10: warning: too many arguments for format [-Wformat-extra-args] 111 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:118:10: warning: too many arguments for format [-Wformat-extra-args] 118 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:125:10: warning: too many arguments for format [-Wformat-extra-args] 125 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:132:10: warning: too many arguments for format [-Wformat-extra-args] 132 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:139:10: warning: too many arguments for format [-Wformat-extra-args] 139 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:146:10: warning: too many arguments for format [-Wformat-extra-args] 146 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:153:10: warning: too many arguments for format [-Wformat-extra-args] 153 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_1_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:232:10: warning: too many arguments for format [-Wformat-extra-args] 232 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:244:10: warning: too many arguments for format [-Wformat-extra-args] 244 | fail("SBase_setName(S31, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_2_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:308:10: warning: too many arguments for format [-Wformat-extra-args] 308 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:320:10: warning: too many arguments for format [-Wformat-extra-args] 320 | fail("SBase_setName(S32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_3_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:384:10: warning: too many arguments for format [-Wformat-extra-args] 384 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:396:10: warning: too many arguments for format [-Wformat-extra-args] 396 | fail("SBase_setName(E31, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_4_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:460:10: warning: too many arguments for format [-Wformat-extra-args] 460 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:472:10: warning: too many arguments for format [-Wformat-extra-args] 472 | fail("SBase_setName(E32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_6_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:595:10: warning: too many arguments for format [-Wformat-extra-args] 595 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:607:10: warning: too many arguments for format [-Wformat-extra-args] 607 | fail("SBase_setName(U32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_8_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:773:10: warning: too many arguments for format [-Wformat-extra-args] 773 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:785:10: warning: too many arguments for format [-Wformat-extra-args] 785 | fail("SBase_setName(AR32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_10_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:978:10: warning: too many arguments for format [-Wformat-extra-args] 978 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBaseIdName.cpp:990:10: warning: too many arguments for format [-Wformat-extra-args] 990 | fail("SBase_setName(EA32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 91%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/units/test/TestUnitFormulaFormatter1.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase_newSetters.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase_newSetters.cpp:52: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase_newSetters.cpp: In function ‘void SBaseTest_setup1()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBase_newSetters.cpp:79:10: warning: too many arguments for format [-Wformat-extra-args] 79 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 92%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util 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src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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/builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestWriteSBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestAlgebraicRule.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestAlgebraicRule.c:53: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestAlgebraicRule.c: In function ‘void AlgebraicRuleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestAlgebraicRule.c:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("AlgebraicRule_createAlgebraic() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestAssignmentRule.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestAssignmentRule.c:52: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestAssignmentRule.c: In function ‘void AssignmentRuleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestAssignmentRule.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("AssignmentRule_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestAssignmentRule.c: In function ‘void test_AssignmentRule_setVariable_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestAssignmentRule.c:118:10: warning: too many arguments for format [-Wformat-extra-args] 118 | fail("AssignmentRule_setVariable(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestAssignmentRule.c:130:10: warning: too many arguments for format [-Wformat-extra-args] 130 | fail("AssignmentRule_setVariable(AR, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestAssignmentRule.c: In function ‘void test_AssignmentRule_unsetVariable_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestAssignmentRule.c:151:10: warning: too many arguments for format [-Wformat-extra-args] 151 | fail("AssignmentRule_unsetVariable(AR) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment.c:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment.c: In function ‘void CompartmentTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Compartment_create(2, 4) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment.c: In function ‘void test_Compartment_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment.c:184:10: warning: too many arguments for format [-Wformat-extra-args] 184 | fail("Compartment_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment.c:196:10: warning: too many arguments for format [-Wformat-extra-args] 196 | fail("Compartment_setId(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment.c: In function ‘void test_Compartment_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment.c:214:10: warning: too many arguments for format [-Wformat-extra-args] 214 | fail("Compartment_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment.c:226:10: warning: too many arguments for format [-Wformat-extra-args] 226 | fail("Compartment_setName(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment.c: In function ‘void test_Compartment_setUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment.c:244:10: warning: too many arguments for format [-Wformat-extra-args] 244 | fail("Compartment_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment.c:256:10: warning: too many arguments for format [-Wformat-extra-args] 256 | fail("Compartment_setUnits(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment.c: In function ‘void test_Compartment_setOutside_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment.c:274:10: warning: too many arguments for format [-Wformat-extra-args] 274 | fail("Compartment_setOutside(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment.c:286:10: warning: too many arguments for format [-Wformat-extra-args] 286 | fail("Compartment_setOutside(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentType.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentType.c:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentType.c: In function ‘void CompartmentTypeTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentType.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("CompartmentType_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentType.c: In function ‘void test_CompartmentType_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentType.c:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("CompartmentType_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentType.c:150:10: warning: too many arguments for format [-Wformat-extra-args] 150 | fail("CompartmentType_setId(CT, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentType.c: In function ‘void test_CompartmentType_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentType.c:168:10: warning: too many arguments for format [-Wformat-extra-args] 168 | fail("CompartmentType_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentType.c:180:10: warning: too many arguments for format [-Wformat-extra-args] 180 | fail("CompartmentType_setName(CT, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentType_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentType_newSetters.c:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentType_newSetters.c: In function ‘void CompartmentTypeTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentType_newSetters.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("CompartmentType_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentVolumeRule.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentVolumeRule.c:47: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentVolumeRule.c: In function ‘void CompartmentVolumeRuleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentVolumeRule.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Rule_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentVolumeRule.c: In function ‘void test_CompartmentVolumeRule_setCompartment_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentVolumeRule.c:149:11: warning: too many arguments for format [-Wformat-extra-args] 149 | fail( "Rule_setVariable(...)" | ^~~~~~~~~~~~~~~~~~~~~~~ 150 | " did not make a copy of string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartmentVolumeRule.c:164:11: warning: too many arguments for format [-Wformat-extra-args] 164 | fail( "Rule_setVariable(CVR, NULL)" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | " did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment_newSetters.c:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment_newSetters.c: In function ‘void CompartmentTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestCompartment_newSetters.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Compartment_create(2, 4) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConstraint.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConstraint.c:53: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConstraint.c: In function ‘void ConstraintTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConstraint.c:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("Constraint_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConstraint.c: In function ‘void test_Constraint_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConstraint.c:143:10: warning: too many arguments for format [-Wformat-extra-args] 143 | fail("Constraint_setMath(C, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConstraint.c: In function ‘void test_Constraint_setMessage_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConstraint.c:187:10: warning: too many arguments for format [-Wformat-extra-args] 187 | fail("Constraint_unsetMessage(C) did not clear XMLNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConstraint_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConstraint_newSetters.c:53: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConstraint_newSetters.c: In function ‘void ConstraintTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConstraint_newSetters.c:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("Constraint_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConstraint_newSetters.c: In function ‘void test_Constraint_setMessage1_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConstraint_newSetters.c:137:10: warning: too many arguments for format [-Wformat-extra-args] 137 | fail("Constraint_unsetMessage(C) did not clear XMLNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConstraint_newSetters.c: In function ‘void test_Constraint_setMessage2_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestConstraint_newSetters.c:184:10: warning: too many arguments for format [-Wformat-extra-args] 184 | fail("Constraint_unsetMessage(C) did not clear XMLNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestDelay.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestDelay.c:51: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestDelay.c: In function ‘void DelayTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestDelay.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("Delay_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestDelay.c: In function ‘void test_Delay_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestDelay.c:166:10: warning: too many arguments for format [-Wformat-extra-args] 166 | fail("Delay_setMath(D, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c:53: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c: In function ‘void EventTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("Event_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c: In function ‘void test_Event_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c:154:10: warning: too many arguments for format [-Wformat-extra-args] 154 | fail("Event_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c:166:10: warning: too many arguments for format [-Wformat-extra-args] 166 | fail("Event_setId(E, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c: In function ‘void test_Event_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c:184:10: warning: too many arguments for format [-Wformat-extra-args] 184 | fail("Event_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c:196:10: warning: too many arguments for format [-Wformat-extra-args] 196 | fail("Event_setName(E, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c: In function ‘void test_Event_setTrigger_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c:216:10: warning: too many arguments for format [-Wformat-extra-args] 216 | fail("Event_setTrigger(...) did not make a copy of trigger."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c:228:10: warning: too many arguments for format [-Wformat-extra-args] 228 | fail("Event_setTrigger(E, NULL) did not clear trigger."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c: In function ‘void test_Event_setDelay_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c:250:10: warning: too many arguments for format [-Wformat-extra-args] 250 | fail("Event_setDelay(...) did not make a copy of Delay."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c:262:10: warning: too many arguments for format [-Wformat-extra-args] 262 | fail("Event_setDelay(E, NULL) did not clear Delay."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c: In function ‘void test_Event_setTimeUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c:283:10: warning: too many arguments for format [-Wformat-extra-args] 283 | fail("Event_setTimeUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent.c:295:10: warning: too many arguments for format [-Wformat-extra-args] 295 | fail("Event_setTimeUnits(E, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEventAssignment.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEventAssignment.c:51: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEventAssignment.c: In function ‘void EventAssignmentTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEventAssignment.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("EventAssignment_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEventAssignment.c: In function ‘void test_EventAssignment_setVariable_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEventAssignment.c:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("EventAssignment_setVariable(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEventAssignment.c:150:10: warning: too many arguments for format [-Wformat-extra-args] 150 | fail("EventAssignment_setVariable(EA, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEventAssignment.c: In function ‘void test_EventAssignment_unsetVariable_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEventAssignment.c:168:10: warning: too many arguments for format [-Wformat-extra-args] 168 | fail("EventAssignment_setVariable(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEventAssignment.c:176:10: warning: too many arguments for format [-Wformat-extra-args] 176 | fail("EventAssignment_unsetVariable(EA) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEventAssignment.c: In function ‘void test_EventAssignment_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEventAssignment.c:218:10: warning: too many arguments for format [-Wformat-extra-args] 218 | fail("EventAssignment_setMath(EA, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEventAssignment_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEventAssignment_newSetters.c:53: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEventAssignment_newSetters.c: In function ‘void EventAssignmentTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEventAssignment_newSetters.c:75:10: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("EventAssignment_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent_newSetters.c:53: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent_newSetters.c: In function ‘void EventTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestEvent_newSetters.c:75:10: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("Event_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestFunctionDefinition.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestFunctionDefinition.c:51: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestFunctionDefinition.c: In function ‘void FunctionDefinitionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestFunctionDefinition.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("FunctionDefinition_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestFunctionDefinition.c: In function ‘void test_FunctionDefinition_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestFunctionDefinition.c:207:10: warning: too many arguments for format [-Wformat-extra-args] 207 | fail("FunctionDefinition_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestFunctionDefinition.c:219:10: warning: too many arguments for format [-Wformat-extra-args] 219 | fail("FunctionDefinition_setId(FD, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestFunctionDefinition.c: In function ‘void test_FunctionDefinition_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestFunctionDefinition.c:237:10: warning: too many arguments for format [-Wformat-extra-args] 237 | fail("FunctionDefinition_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestFunctionDefinition.c:249:10: warning: too many arguments for format [-Wformat-extra-args] 249 | fail("FunctionDefinition_setName(FD, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestFunctionDefinition.c: In function ‘void test_FunctionDefinition_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestFunctionDefinition.c:291:10: warning: too many arguments for format [-Wformat-extra-args] 291 | fail("FunctionDefinition_setMath(FD, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestFunctionDefinition_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestFunctionDefinition_newSetters.c:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestFunctionDefinition_newSetters.c: In function ‘void FunctionDefinitionTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestFunctionDefinition_newSetters.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("FunctionDefinition_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestInitialAssignment.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestInitialAssignment.c:51: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestInitialAssignment.c: In function ‘void InitialAssignmentTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestInitialAssignment.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("InitialAssignment_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestInitialAssignment.c: In function ‘void test_InitialAssignment_setSymbol_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestInitialAssignment.c:135:10: warning: too many arguments for format [-Wformat-extra-args] 135 | fail("InitialAssignment_setSymbol(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestInitialAssignment.c:147:10: warning: too many arguments for format [-Wformat-extra-args] 147 | fail("InitialAssignment_setSymbol(IA, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestInitialAssignment.c: In function ‘void test_InitialAssignment_unsetSymbol_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestInitialAssignment.c:165:10: warning: too many arguments for format [-Wformat-extra-args] 165 | fail("InitialAssignment_setSymbol(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestInitialAssignment.c:173:10: warning: too many arguments for format [-Wformat-extra-args] 173 | fail("InitialAssignment_unsetSymbol(IA, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestInitialAssignment.c: In function ‘void test_InitialAssignment_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestInitialAssignment.c:214:10: warning: too many arguments for format [-Wformat-extra-args] 214 | fail("InitialAssignment_setMath(IA, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestInitialAssignment_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestInitialAssignment_newSetters.c:53: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestInitialAssignment_newSetters.c: In function ‘void InitialAssignmentTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestInitialAssignment_newSetters.c:75:10: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("InitialAssignment_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestKineticLaw.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestKineticLaw.c:53: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestKineticLaw.c: In function ‘void KineticLawTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestKineticLaw.c:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("KineticLaw_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestKineticLaw.c: In function ‘void test_KineticLaw_setFormula_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestKineticLaw.c:197:10: warning: too many arguments for format [-Wformat-extra-args] 197 | fail("KineticLaw_setFormula(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestKineticLaw.c:209:10: warning: too many arguments for format [-Wformat-extra-args] 209 | fail("KineticLaw_setFormula(kl, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestKineticLaw.c: In function ‘void test_KineticLaw_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestKineticLaw.c:288:11: warning: too many arguments for format [-Wformat-extra-args] 288 | fail( "KineticLaw_setMath(kl, NULL) did not clear ASTNode." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestKineticLaw_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestKineticLaw_newSetters.c:53: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestKineticLaw_newSetters.c: In function ‘void KineticLawTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestKineticLaw_newSetters.c:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("KineticLaw_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Compartment.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Compartment.c:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Compartment.c: In function ‘void L3CompartmentTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Compartment.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("Compartment_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Compartment.c: In function ‘void test_L3_Compartment_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Compartment.c:130:10: warning: too many arguments for format [-Wformat-extra-args] 130 | fail("Compartment_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Compartment.c: In function ‘void test_L3_Compartment_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Compartment.c:150:10: warning: too many arguments for format [-Wformat-extra-args] 150 | fail("Compartment_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Compartment.c:159:10: warning: too many arguments for format [-Wformat-extra-args] 159 | fail("Compartment_unsetName(C) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Compartment.c: In function ‘void test_L3_Compartment_units_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Compartment.c:179:10: warning: too many arguments for format [-Wformat-extra-args] 179 | fail("Compartment_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Compartment.c:188:10: warning: too many arguments for format [-Wformat-extra-args] 188 | fail("Compartment_unsetUnits(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Event.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Event.c:51: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Event.c: In function ‘void L3EventTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Event.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("Event_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Event.c: In function ‘void test_L3_Event_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Event.c:123:10: warning: too many arguments for format [-Wformat-extra-args] 123 | fail("Event_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Event.c:132:10: warning: too many arguments for format [-Wformat-extra-args] 132 | fail("Event_unsetId(E) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Event.c: In function ‘void test_L3_Event_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Event.c:152:10: warning: too many arguments for format [-Wformat-extra-args] 152 | fail("Event_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Event.c:161:10: warning: too many arguments for format [-Wformat-extra-args] 161 | fail("Event_unsetName(E) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3KineticLaw.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3KineticLaw.c:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3KineticLaw.c: In function ‘void L3KineticLawTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3KineticLaw.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("KineticLaw_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3LocalParameter.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3LocalParameter.c:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3LocalParameter.c: In function ‘void L3LocalParameterTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3LocalParameter.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("LocalParameter_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3LocalParameter.c: In function ‘void test_L3_LocalParameter_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3LocalParameter.c:123:10: warning: too many arguments for format [-Wformat-extra-args] 123 | fail("LocalParameter_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3LocalParameter.c: In function ‘void test_L3_LocalParameter_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3LocalParameter.c:143:10: warning: too many arguments for format [-Wformat-extra-args] 143 | fail("LocalParameter_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3LocalParameter.c:152:10: warning: too many arguments for format [-Wformat-extra-args] 152 | fail("LocalParameter_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3LocalParameter.c: In function ‘void test_L3_LocalParameter_units_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3LocalParameter.c:172:10: warning: too many arguments for format [-Wformat-extra-args] 172 | fail("LocalParameter_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3LocalParameter.c:181:10: warning: too many arguments for format [-Wformat-extra-args] 181 | fail("LocalParameter_unsetUnits(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c: In function ‘void L3ModelTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Model_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:131:10: warning: too many arguments for format [-Wformat-extra-args] 131 | fail("Model_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:140:10: warning: too many arguments for format [-Wformat-extra-args] 140 | fail("Model_unsetId(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:160:10: warning: too many arguments for format [-Wformat-extra-args] 160 | fail("Model_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:169:10: warning: too many arguments for format [-Wformat-extra-args] 169 | fail("Model_unsetName(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_substanceUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:189:10: warning: too many arguments for format [-Wformat-extra-args] 189 | fail("Model_setSubstanceUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:198:10: warning: too many arguments for format [-Wformat-extra-args] 198 | fail("Model_unsetSubstanceUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_timeUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:218:10: warning: too many arguments for format [-Wformat-extra-args] 218 | fail("Model_setTimeUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:227:10: warning: too many arguments for format [-Wformat-extra-args] 227 | fail("Model_unsetTimeUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_volumeUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:247:10: warning: too many arguments for format [-Wformat-extra-args] 247 | fail("Model_setVolumeUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:256:10: warning: too many arguments for format [-Wformat-extra-args] 256 | fail("Model_unsetVolumeUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_areaUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:276:10: warning: too many arguments for format [-Wformat-extra-args] 276 | fail("Model_setAreaUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:285:10: warning: too many arguments for format [-Wformat-extra-args] 285 | fail("Model_unsetAreaUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_lengthUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:305:10: warning: too many arguments for format [-Wformat-extra-args] 305 | fail("Model_setLengthUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:314:10: warning: too many arguments for format [-Wformat-extra-args] 314 | fail("Model_unsetLengthUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_extentUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:334:10: warning: too many arguments for format [-Wformat-extra-args] 334 | fail("Model_setExtentUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:343:10: warning: too many arguments for format [-Wformat-extra-args] 343 | fail("Model_unsetExtentUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_conversionFactor_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:363:10: warning: too many arguments for format [-Wformat-extra-args] 363 | fail("Model_setConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Model.c:372:10: warning: too many arguments for format [-Wformat-extra-args] 372 | fail("Model_unsetConversionFactor(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Parameter.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Parameter.c:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Parameter.c: In function ‘void L3ParameterTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Parameter.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Parameter_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Parameter.c: In function ‘void test_L3_Parameter_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Parameter.c:125:10: warning: too many arguments for format [-Wformat-extra-args] 125 | fail("Parameter_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Parameter.c: In function ‘void test_L3_Parameter_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Parameter.c:145:10: warning: too many arguments for format [-Wformat-extra-args] 145 | fail("Parameter_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Parameter.c:154:10: warning: too many arguments for format [-Wformat-extra-args] 154 | fail("Parameter_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Parameter.c: In function ‘void test_L3_Parameter_units_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Parameter.c:174:10: warning: too many arguments for format [-Wformat-extra-args] 174 | fail("Parameter_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Parameter.c:183:10: warning: too many arguments for format [-Wformat-extra-args] 183 | fail("Parameter_unsetUnits(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Reaction.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Reaction.c:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Reaction.c: In function ‘void L3ReactionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Reaction.c:71:10: warning: too many arguments for format [-Wformat-extra-args] 71 | fail("Reaction_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Reaction.c:77:10: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("Reaction_create(3, 2) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Reaction.c: In function ‘void test_L3_Reaction_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Reaction.c:133:10: warning: too many arguments for format [-Wformat-extra-args] 133 | fail("Reaction_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Reaction.c: In function ‘void test_L3_Reaction_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Reaction.c:153:10: warning: too many arguments for format [-Wformat-extra-args] 153 | fail("Reaction_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Reaction.c:162:10: warning: too many arguments for format [-Wformat-extra-args] 162 | fail("Reaction_unsetName(R) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Reaction.c: In function ‘void test_L3_Reaction_compartment_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Reaction.c:182:10: warning: too many arguments for format [-Wformat-extra-args] 182 | fail("Reaction_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Reaction.c:191:10: warning: too many arguments for format [-Wformat-extra-args] 191 | fail("Reaction_unsetCompartment(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Species.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Species.c:53: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Species.c: In function ‘void L3SpeciesTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Species.c:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("Species_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Species.c: In function ‘void test_L3_Species_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Species.c:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("Species_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Species.c: In function ‘void test_L3_Species_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Species.c:158:10: warning: too many arguments for format [-Wformat-extra-args] 158 | fail("Species_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Species.c:167:10: warning: too many arguments for format [-Wformat-extra-args] 167 | fail("Species_unsetName(S) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Species.c: In function ‘void test_L3_Species_compartment_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Species.c:187:10: warning: too many arguments for format [-Wformat-extra-args] 187 | fail("Species_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Species.c: In function ‘void test_L3_Species_substanceUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Species.c:252:10: warning: too many arguments for format [-Wformat-extra-args] 252 | fail("Species_setSubstanceUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Species.c:261:10: warning: too many arguments for format [-Wformat-extra-args] 261 | fail("Species_unsetSubstanceUnits(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Species.c: In function ‘void test_L3_Species_conversionFactor_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Species.c:368:10: warning: too many arguments for format [-Wformat-extra-args] 368 | fail("Species_setConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Species.c:377:10: warning: too many arguments for format [-Wformat-extra-args] 377 | fail("Species_unsetConversionFactor(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3SpeciesReference.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3SpeciesReference.c:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3SpeciesReference.c: In function ‘void L3SpeciesReferenceTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3SpeciesReference.c:67:10: warning: too many arguments for format [-Wformat-extra-args] 67 | fail("SpeciesReference_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3SpeciesReference.c: In function ‘void test_L3_SpeciesReference_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3SpeciesReference.c:122:10: warning: too many arguments for format [-Wformat-extra-args] 122 | fail("SpeciesReference_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3SpeciesReference.c: In function ‘void test_L3_SpeciesReference_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3SpeciesReference.c:142:10: warning: too many arguments for format [-Wformat-extra-args] 142 | fail("SpeciesReference_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3SpeciesReference.c:151:10: warning: too many arguments for format [-Wformat-extra-args] 151 | fail("SpeciesReference_unsetName(SR) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3SpeciesReference.c: In function ‘void test_L3_SpeciesReference_species_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3SpeciesReference.c:171:10: warning: too many arguments for format [-Wformat-extra-args] 171 | fail("SpeciesReference_setSpecies(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Trigger.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Trigger.c:51: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Trigger.c: In function ‘void L3TriggerTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Trigger.c:71:10: warning: too many arguments for format [-Wformat-extra-args] 71 | fail("Trigger_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Unit.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Unit.c:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Unit.c: In function ‘void L3UnitTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestL3Unit.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Unit_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestListOf.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestModel.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestModel.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModel.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModel.c:47: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModel.c: In function ‘void ModelTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModel.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Model_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModel.c: In function ‘void test_Model_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModel.c:154:10: warning: too many arguments for format [-Wformat-extra-args] 154 | fail("Model_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModel.c:166:10: warning: too many arguments for format [-Wformat-extra-args] 166 | fail("Model_setId(M, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModel.c: In function ‘void test_Model_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModel.c:189:10: warning: too many arguments for format [-Wformat-extra-args] 189 | fail("Model_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModel.c:201:10: warning: too many arguments for format [-Wformat-extra-args] 201 | fail("Model_setName(M, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModel_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModel_newSetters.c:65: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModel_newSetters.c: In function ‘void ModelTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModel_newSetters.c:87:10: warning: too many arguments for format [-Wformat-extra-args] 87 | fail("Model_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModifierSpeciesReference.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModifierSpeciesReference.c:51: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModifierSpeciesReference.c: In function ‘void ModifierSpeciesReferenceTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModifierSpeciesReference.c:72:11: warning: too many arguments for format [-Wformat-extra-args] 72 | fail( "ModifierSpeciesReference_create() returned a NULL pointer." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModifierSpeciesReference.c: In function ‘void test_ModifierSpeciesReference_setSpecies_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModifierSpeciesReference.c:124:11: warning: too many arguments for format [-Wformat-extra-args] 124 | fail( "ModifierModifierSpeciesReference_setSpecies(...) " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | "did not make a copy of string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModifierSpeciesReference.c:140:11: warning: too many arguments for format [-Wformat-extra-args] 140 | fail( "ModifierModifierSpeciesReference_setSpecies(MSR, NULL) " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | "did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModifierSpeciesReference.c: In function ‘void test_ModifierSpeciesReference_unsetSpecies_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModifierSpeciesReference.c:162:11: warning: too many arguments for format [-Wformat-extra-args] 162 | fail( "ModifierModifierSpeciesReference_setSpecies(...) " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | "did not make a copy of string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestModifierSpeciesReference.c:171:11: warning: too many arguments for format [-Wformat-extra-args] 171 | fail( "ModifierModifierSpeciesReference_unsetSpecies(MSR) " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | "did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameter.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameter.c:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameter.c: In function ‘void ParameterTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameter.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Parameter_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameter.c: In function ‘void test_Parameter_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameter.c:148:10: warning: too many arguments for format [-Wformat-extra-args] 148 | fail("Parameter_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameter.c:160:10: warning: too many arguments for format [-Wformat-extra-args] 160 | fail("Parameter_setId(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameter.c: In function ‘void test_Parameter_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameter.c:178:10: warning: too many arguments for format [-Wformat-extra-args] 178 | fail("Parameter_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameter.c:190:10: warning: too many arguments for format [-Wformat-extra-args] 190 | fail("Parameter_setName(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameter.c: In function ‘void test_Parameter_setUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameter.c:208:10: warning: too many arguments for format [-Wformat-extra-args] 208 | fail("Parameter_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameter.c:220:10: warning: too many arguments for format [-Wformat-extra-args] 220 | fail("Parameter_setUnits(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameterRule.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameterRule.c:47: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameterRule.c: In function ‘void ParameterRuleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameterRule.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("Rule_createAssignment() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameterRule.c: In function ‘void test_ParameterRule_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameterRule.c:153:11: warning: too many arguments for format [-Wformat-extra-args] 153 | fail( "ParameterRule_setName(...) did not make a copy of string." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameterRule.c:168:11: warning: too many arguments for format [-Wformat-extra-args] 168 | fail( "Rule_setVariable(PR, NULL)" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 | " did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameterRule.c: In function ‘void test_ParameterRule_setUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameterRule.c:187:11: warning: too many arguments for format [-Wformat-extra-args] 187 | fail( "Rule_setUnits(...) did not make a copy of string." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameterRule.c:199:11: warning: too many arguments for format [-Wformat-extra-args] 199 | fail( "Rule_setUnits(PR, NULL) did not clear string." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameter_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameter_newSetters.c:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameter_newSetters.c: In function ‘void ParameterTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestParameter_newSetters.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Parameter_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestPriority.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestPriority.c:51: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestPriority.c: In function ‘void PriorityTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestPriority.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Priority_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestPriority.c: In function ‘void test_Priority_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestPriority.c:133:10: warning: too many arguments for format [-Wformat-extra-args] 133 | fail("Priority_setMath(P, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRateRule.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRateRule.c:51: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRateRule.c: In function ‘void RateRuleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRateRule.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("RateRule_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRateRule.c: In function ‘void test_RateRule_setVariable_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRateRule.c:117:10: warning: too many arguments for format [-Wformat-extra-args] 117 | fail("RateRule_setVariable(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRateRule.c:129:10: warning: too many arguments for format [-Wformat-extra-args] 129 | fail("RateRule_setVariable(RR, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRateRule.c: In function ‘void test_RateRule_unsetVariable_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRateRule.c:150:10: warning: too many arguments for format [-Wformat-extra-args] 150 | fail("RateRule_unsetVariable(RR) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReaction.c In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReaction.c:47: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReaction.c: In function ‘void ReactionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReaction.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Reaction_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReaction.c: In function ‘void test_Reaction_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReaction.c:158:10: warning: too many arguments for format [-Wformat-extra-args] 158 | fail("Reaction_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReaction.c:170:10: warning: too many arguments for format [-Wformat-extra-args] 170 | fail("Reaction_setId(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReaction.c: In function ‘void test_Reaction_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReaction.c:188:10: warning: too many arguments for format [-Wformat-extra-args] 188 | fail("Reaction_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReaction.c:200:10: warning: too many arguments for format [-Wformat-extra-args] 200 | fail("Reaction_setName(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReaction.c: In function ‘void test_Reaction_compartment_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReaction.c:275:10: warning: too many arguments for format [-Wformat-extra-args] 275 | fail("Reaction_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReaction.c:287:10: warning: too many arguments for format [-Wformat-extra-args] 287 | fail("Reaction_unsetCompartment(r) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReaction_newSetters.c In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReaction_newSetters.c:52: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReaction_newSetters.c: In function ‘void ReactionTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReaction_newSetters.c:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("Reaction_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile1.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile1.c:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile1.c: In function ‘void test_read_l1v1_branch_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile1.c:80:10: warning: too many arguments for format [-Wformat-extra-args] 80 | fail("readSBML(\"l1v1-branch.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile2.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile2.c:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile2.c: In function ‘void test_read_l1v1_units_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile2.c:80:10: warning: too many arguments for format [-Wformat-extra-args] 80 | fail("readSBML(\"l1v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile3.c In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile3.c:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile3.c: In function ‘void test_read_l1v1_rules_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile3.c:81:10: warning: too many arguments for format [-Wformat-extra-args] 81 | fail("readSBML(\"l1v1-rules.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile4.c In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile4.c:46: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile4.c: In function ‘void test_read_l1v1_minimal_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestReadFromFile4.c:76:10: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("readSBML(\"l1v1-minimal.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRule.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRule.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRule.c:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRule.c: In function ‘void RuleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRule.c:71:10: warning: too many arguments for format [-Wformat-extra-args] 71 | fail("Rule_createAlgebraic() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRule.c: In function ‘void test_Rule_setFormula_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRule.c:108:10: warning: too many arguments for format [-Wformat-extra-args] 108 | fail("Rule_setFormula(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRule.c:120:10: warning: too many arguments for format [-Wformat-extra-args] 120 | fail("Rule_setFormula(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRule.c: In function ‘void test_Rule_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRule.c:145:10: warning: too many arguments for format [-Wformat-extra-args] 145 | fail("Rule_setMath(R, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRule_newSetters.c In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRule_newSetters.c:53: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRule_newSetters.c: In function ‘void RuleTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRule_newSetters.c:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("Rule_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP 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CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLConvert.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common 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src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLDocument.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLErrorLog.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLErrorLog.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLErrorLog.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLErrorLog.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSBMLErrorLog.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c: In function ‘void SpeciesTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("Species_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c: In function ‘void test_Species_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c:167:10: warning: too many arguments for format [-Wformat-extra-args] 167 | fail("Species_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c:179:10: warning: too many arguments for format [-Wformat-extra-args] 179 | fail("Species_setId(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c: In function ‘void test_Species_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c:197:10: warning: too many arguments for format [-Wformat-extra-args] 197 | fail("Species_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c:209:10: warning: too many arguments for format [-Wformat-extra-args] 209 | fail("Species_setName(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c: In function ‘void test_Species_setCompartment_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c:227:10: warning: too many arguments for format [-Wformat-extra-args] 227 | fail("Species_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c:239:10: warning: too many arguments for format [-Wformat-extra-args] 239 | fail("Species_setComartment(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c: In function ‘void test_Species_unsetCompartment_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c:257:10: warning: too many arguments for format [-Wformat-extra-args] 257 | fail("Species_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c:265:10: warning: too many arguments for format [-Wformat-extra-args] 265 | fail("Species_unsetComartment(S) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c: In function ‘void test_Species_setSubstanceUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c:313:10: warning: too many arguments for format [-Wformat-extra-args] 313 | fail("Species_setSubstanceUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c:325:10: warning: too many arguments for format [-Wformat-extra-args] 325 | fail("Species_setSubstanceUnits(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c: In function ‘void test_Species_setSpatialSizeUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c:345:10: warning: too many arguments for format [-Wformat-extra-args] 345 | fail("Species_setSpatialSizeUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c:357:10: warning: too many arguments for format [-Wformat-extra-args] 357 | fail("Species_setSpatialSizeUnits(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c: In function ‘void test_Species_setUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c:377:10: warning: too many arguments for format [-Wformat-extra-args] 377 | fail("Species_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies.c:389:10: warning: too many arguments for format [-Wformat-extra-args] 389 | fail("Species_setUnits(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesConcentrationRule.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesConcentrationRule.c:47: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesConcentrationRule.c: In function ‘void SpeciesConcentrationRuleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesConcentrationRule.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Rule_createAssignment() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesConcentrationRule.c: In function ‘void test_SpeciesConcentrationRule_setSpecies_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesConcentrationRule.c:148:11: warning: too many arguments for format [-Wformat-extra-args] 148 | fail( "SpeciesConcentrationRule_setSpecies(...)" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | " did not make a copy of string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesConcentrationRule.c:163:11: warning: too many arguments for format [-Wformat-extra-args] 163 | fail( "SpeciesConcentrationRule_setSpecies(SCR, NULL)" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 | " did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesReference.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesReference.c:53: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesReference.c: In function ‘void SpeciesReferenceTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesReference.c:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("SpeciesReference_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesReference.c: In function ‘void test_SpeciesReference_setSpecies_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesReference.c:162:10: warning: too many arguments for format [-Wformat-extra-args] 162 | fail("SpeciesReference_setSpecies(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesReference.c:174:10: warning: too many arguments for format [-Wformat-extra-args] 174 | fail("SpeciesReference_setSpecies(SR, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesReference.c: In function ‘void test_SpeciesReference_unsetSpecies_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesReference.c:192:10: warning: too many arguments for format [-Wformat-extra-args] 192 | fail("SpeciesReference_setSpecies(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesReference.c:200:10: warning: too many arguments for format [-Wformat-extra-args] 200 | fail("SpeciesReference_unsetSpecies(SR) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesReference.c: In function ‘void test_SpeciesReference_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesReference.c:218:10: warning: too many arguments for format [-Wformat-extra-args] 218 | fail("SpeciesReference_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesReference.c:230:10: warning: too many arguments for format [-Wformat-extra-args] 230 | fail("SpeciesReference_setId(SR, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesReference_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesReference_newSetters.c:52: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesReference_newSetters.c: In function ‘void SpeciesReferenceTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesReference_newSetters.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("SpeciesReference_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesType.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesType.c:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesType.c: In function ‘void SpeciesTypeTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesType.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("SpeciesType_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesType.c: In function ‘void test_SpeciesType_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesType.c:139:10: warning: too many arguments for format [-Wformat-extra-args] 139 | fail("SpeciesType_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesType.c:151:10: warning: too many arguments for format [-Wformat-extra-args] 151 | fail("SpeciesType_setId(CT, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesType.c: In function ‘void test_SpeciesType_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesType.c:169:10: warning: too many arguments for format [-Wformat-extra-args] 169 | fail("SpeciesType_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesType.c:181:10: warning: too many arguments for format [-Wformat-extra-args] 181 | fail("SpeciesType_setName(CT, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesType_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesType_newSetters.c:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesType_newSetters.c: In function ‘void SpeciesTypeTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpeciesType_newSetters.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("SpeciesType_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies_newSetters.c In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies_newSetters.c:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies_newSetters.c: In function ‘void SpeciesTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSpecies_newSetters.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("Species_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestStoichiometryMath.c In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestStoichiometryMath.c:51: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestStoichiometryMath.c: In function ‘void StoichiometryMathTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestStoichiometryMath.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("StoichiometryMath_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestStoichiometryMath.c: In function ‘void test_StoichiometryMath_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestStoichiometryMath.c:166:10: warning: too many arguments for format [-Wformat-extra-args] 166 | fail("StoichiometryMath_setMath(D, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestSyntaxChecker.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestTrigger.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestTrigger.c:51: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestTrigger.c: In function ‘void TriggerTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestTrigger.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Trigger_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestTrigger.c: In function ‘void test_Trigger_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestTrigger.c:164:10: warning: too many arguments for format [-Wformat-extra-args] 164 | fail("Trigger_setMath(D, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnit.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnit.c:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnit.c: In function ‘void UnitTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnit.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Unit_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnitDefinition.c In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnitDefinition.c:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnitDefinition.c: In function ‘void UnitDefinitionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnitDefinition.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("UnitDefinition_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnitDefinition.c: In function ‘void test_UnitDefinition_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnitDefinition.c:164:10: warning: too many arguments for format [-Wformat-extra-args] 164 | fail("UnitDefinition_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnitDefinition.c:176:10: warning: too many arguments for format [-Wformat-extra-args] 176 | fail("UnitDefinition_setId(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnitDefinition.c: In function ‘void test_UnitDefinition_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnitDefinition.c:194:10: warning: too many arguments for format [-Wformat-extra-args] 194 | fail("UnitDefinition_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnitDefinition.c:206:10: warning: too many arguments for format [-Wformat-extra-args] 206 | fail("UnitDefinition_setName(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnitDefinition_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnitDefinition_newSetters.c:50: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnitDefinition_newSetters.c: In function ‘void UnitDefinitionTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnitDefinition_newSetters.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("UnitDefinition_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnitKind.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnit_newSetters.c In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnit_newSetters.c:49: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnit_newSetters.c: In function ‘void UnitTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test/TestUnit_newSetters.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Unit_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 92%] Linking CXX executable test_sbml_units cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/units/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_units.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o CMakeFiles/test_sbml_units.dir/TestRunner.c.o -o test_sbml_units ../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 97%] Built target test_sbml_units make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/util/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/util/test/CMakeFiles/test_sbml_util.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 97%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestList.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestList.c.o -MF CMakeFiles/test_sbml_util.dir/TestList.c.o.d -o CMakeFiles/test_sbml_util.dir/TestList.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestList.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestList.c:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestList.c: In function ‘ListTest_setup’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestList.c:58:10: warning: too many arguments for format [-Wformat-extra-args] 58 | fail("List_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 97%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestMemory.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestMemory.c.o -MF CMakeFiles/test_sbml_util.dir/TestMemory.c.o.d -o CMakeFiles/test_sbml_util.dir/TestMemory.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestMemory.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestMemory.c:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestMemory.c: In function ‘test_memory_safe_malloc_fn’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestMemory.c:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("safe_malloc() should not return NULL"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 98%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_util.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_util.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 98%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStack.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStack.c.o -MF CMakeFiles/test_sbml_util.dir/TestStack.c.o.d -o CMakeFiles/test_sbml_util.dir/TestStack.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestStack.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestStack.c:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestStack.c: In function ‘StackTest_setup’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestStack.c:58:10: warning: too many arguments for format [-Wformat-extra-args] 58 | fail("Stack_create(10) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 98%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o -MF CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o.d -o CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestStringBuffer.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestStringBuffer.c:42: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestStringBuffer.c: In function ‘StringBufferTest_setup’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestStringBuffer.c:59:10: warning: too many arguments for format [-Wformat-extra-args] 59 | fail("StringBuffer_create(10) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestStringBuffer.c: In function ‘test_StringBuffer_toString_fn’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestStringBuffer.c:357:10: warning: too many arguments for format [-Wformat-extra-args] 357 | fail("StringBuffer_toString() did not make a copy of its internal buffer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 98%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestUtil.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestUtil.c.o -MF CMakeFiles/test_sbml_util.dir/TestUtil.c.o.d -o CMakeFiles/test_sbml_util.dir/TestUtil.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestUtil.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestUtil.c:55: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestUtil.c: In function ‘test_util_NaN_fn’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestUtil.c:269:24: warning: too many arguments for format [-Wformat-extra-args] 269 | fail_unless( d != d, "util_NaN() did not return NaN."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestUtil.c: In function ‘test_util_NegInf_fn’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestUtil.c:281:10: warning: too many arguments for format [-Wformat-extra-args] 281 | fail("util_NegInf() did not return -Inf."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestUtil.c: In function ‘test_util_PosInf_fn’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestUtil.c:294:10: warning: too many arguments for format [-Wformat-extra-args] 294 | fail("util_PosInf() did not return +Inf."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestUtil.c: In function ‘test_util_NegZero_fn’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test/TestUtil.c:305:23: warning: too many arguments for format [-Wformat-extra-args] 305 | fail_unless(d == 0, "util_NegZero() did not even return a zero!"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 98%] Linking CXX executable test_sbml_util cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/util/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_util.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_sbml_util.dir/TestList.c.o CMakeFiles/test_sbml_util.dir/TestMemory.c.o CMakeFiles/test_sbml_util.dir/TestRunner.c.o CMakeFiles/test_sbml_util.dir/TestStack.c.o CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o CMakeFiles/test_sbml_util.dir/TestUtil.c.o -o test_sbml_util ../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 98%] Built target test_sbml_util make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/validator/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/validator/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 98%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator 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CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o.d -o CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/validator/test/TestConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 98%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 98%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 97%] Linking CXX executable test_sbml_sbml cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_sbml.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 98%] Built target test_sbml_sbml make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test /builddir/build/BUILD/libsbml-5.20.2/build 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src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/TestXMLExceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 99%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src 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-I/builddir/build/BUILD/libsbml-5.20.2/include/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/TestXMLNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 99%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_xml.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 99%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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-fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/TestXMLAttributesC.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 99%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/include/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/TestXMLErrorC.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 99%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/TestXMLErrorLog.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 99%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/include/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/TestXMLInputStream.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 99%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/include/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/TestXMLNamespaces.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' In file included from /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/TestXMLNamespaces.c:45: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/TestXMLNamespaces.c: In function ‘void XMLNamespacesTest_setup()’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/TestXMLNamespaces.c:61:10: warning: too many arguments for format [-Wformat-extra-args] 61 | fail("XMLNamespacesTest_setup() failed to create a XMLNamespaces object."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 99%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/include/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/TestXMLNode_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 99%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/include/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/TestXMLOutputStream.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 99%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src 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/builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/TestXMLToken.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 99%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/TestXMLToken_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 99%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o -c /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test/TestXMLTriple.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 98%] Linking CXX executable test_sbml_validator cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -o test_sbml_validator ../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Built target test_sbml_validator make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/perl /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/perl/CMakeFiles/binding_perl_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Linking CXX executable test_sbml_xml cd /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/xml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_xml.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o CMakeFiles/test_sbml_xml.dir/TestRunner.c.o CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o -o test_sbml_xml ../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Built target test_sbml_xml make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Building CXX object src/bindings/perl/CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/perl && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_perl_lib_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/perl -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/usr/lib64/perl5/CORE -I/builddir/build/BUILD/libsbml-5.20.2/include -I/builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl/../swig -I/builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/bindings/perl/CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o -MF CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o.d -o CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/perl/LibSBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Building CXX object src/bindings/python/CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_python_lib_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/bindings/python -I/builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/../swig -I/builddir/build/BUILD/libsbml-5.20.2/include -I/usr/include/python3.12 -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/bindings/python/CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o -MF CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o.d -o CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python/libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Linking CXX shared library _libsbml.so cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_python_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,_libsbml.so -o _libsbml.so CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Built target binding_python_lib make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/ruby /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/ruby /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Linking CXX shared module LibSBML.so cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/perl && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_perl_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o LibSBML.so CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o ../../libsbml-static.a /usr/lib64/libperl.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Built target binding_perl_lib make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/r /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/CMakeFiles/binding_r_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Building CXX object src/bindings/r/CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_r_lib_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/bindings/r -I/builddir/build/BUILD/libsbml-5.20.2/src/bindings/r/../swig -I/builddir/build/BUILD/libsbml-5.20.2/include -I/usr/include/R -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/bindings/r/CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o -MF CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o.d -o CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Building CXX object src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/ruby && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_ruby_lib_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/ruby -I/builddir/build/BUILD/libsbml-5.20.2/build/src -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/build/src/src -I/builddir/build/BUILD/libsbml-5.20.2/src -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.2/src/bindings/ruby -I/builddir/build/BUILD/libsbml-5.20.2/src/bindings/ruby/../swig -I/builddir/build/BUILD/libsbml-5.20.2/include -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o -MF CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o.d -o CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/ruby/libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Linking CXX shared library libSBML.so cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_r_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libSBML.so -o libSBML.so CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o -L/usr/lib64/R/lib ../../libsbml-static.a -lR /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Built target binding_r_lib make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/r /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/CMakeFiles/binding_r_package.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Linking CXX shared library libSBML.so cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/ruby && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_ruby_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libSBML.so -o libSBML.so CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a /usr/lib64/libruby.so /usr/lib64/libbz2.so -lminizip -lz /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Built target binding_ruby_lib make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Create R Package (64bit) cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/libSBML.so /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/libSBML/inst/libs cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/libSBML.R /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/libSBML/R cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r && /usr/bin/cmake -DR_INTERPRETER="/usr/bin/R" -P /builddir/build/BUILD/libsbml-5.20.2/src/bindings/r/create-r-package.cmake -- Created package: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/libSBML_5.20.2_R_x86_64-redhat-linux-gnu.tar.gz make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Built target binding_r_package make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' make: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsbml-5.20.2/build/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C build libsbml.pc make: Nothing to be done for 'libsbml.pc'. + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.THQcAS + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64 ++ dirname /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsbml-5.20.2 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64 'INSTALL=/usr/bin/install -p' -C build make: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/cmake -S/builddir/build/BUILD/libsbml-5.20.2 -B/builddir/build/BUILD/libsbml-5.20.2/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsbml-5.20.2/build/CMakeFiles /builddir/build/BUILD/libsbml-5.20.2/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src /builddir/build/BUILD/libsbml-5.20.2/build/src/CMakeFiles/sbml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/CMakeFiles/sbml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 34%] Built target sbml /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src /builddir/build/BUILD/libsbml-5.20.2/build/src/CMakeFiles/sbml-static.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/CMakeFiles/sbml-static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 69%] Built target sbml-static /usr/bin/make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 70%] Built target test_comp_extensions /usr/bin/make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 71%] Built target test_comp_sbase /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/util/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 72%] Built target test_comp_util /usr/bin/make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 72%] Built target test_comp_validator /usr/bin/make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 72%] Built target test_sbml_package_fbc /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Built target test_fbc_validator /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Built target test_extension_package_groups /usr/bin/make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Built target test_groups_validator /usr/bin/make -f src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build.make src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/validator/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build.make src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 73%] Built target test_l3v2extendedmath_validator /usr/bin/make -f src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build.make src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/extension/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build.make src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 74%] Built target test_extension_package_l3v2extendedmath /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 76%] Built target test_sbml_package_layout /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 77%] Built target test_layout_validator /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 77%] Built target test_sbml_package_multi /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 77%] Built target test_multi_validator /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 77%] Built target test_extension_package_qual /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Built target test_sbml_package_qual /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 78%] Built target test_qual_validator /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 81%] Built target test_sbml_package_render /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/validator/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 82%] Built target test_render_validator /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 83%] Built target test_sbml_annotation /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/conversion/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 84%] Built target test_sbml_conversion /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/extension/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 85%] Built target test_sbml_extension /usr/bin/make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/math/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/math/test/CMakeFiles/test_sbml_math.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 87%] Built target test_sbml_math /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 95%] Built target test_sbml_sbml /usr/bin/make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/units/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/units/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/units/test/CMakeFiles/test_sbml_units.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 96%] Built target test_sbml_units /usr/bin/make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/util/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/util/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/util/test/CMakeFiles/test_sbml_util.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 97%] Built target test_sbml_util /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/validator/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/validator/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 97%] Built target test_sbml_validator /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/xml/test /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 99%] Built target test_sbml_xml /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/perl /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/perl/CMakeFiles/binding_perl_swig.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 99%] Built target binding_perl_swig /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/perl /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/perl /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/perl/CMakeFiles/binding_perl_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 99%] Built target binding_perl_lib /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/bindings/python/CMakeFiles/binding_python_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 99%] Built target binding_python_swig /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/python /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/bindings/python/CMakeFiles/binding_python_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [ 99%] Built target binding_python_lib /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/ruby /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/ruby /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Built target binding_ruby_swig /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/ruby /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/ruby /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Built target binding_ruby_lib /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/r /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/CMakeFiles/binding_r_swig.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/bindings/r/CMakeFiles/binding_r_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Built target binding_r_swig /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/r /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/CMakeFiles/binding_r_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[2]: Nothing to be done for 'src/bindings/r/CMakeFiles/binding_r_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Built target binding_r_lib /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' cd /builddir/build/BUILD/libsbml-5.20.2/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.2 /builddir/build/BUILD/libsbml-5.20.2/src/bindings/r /builddir/build/BUILD/libsbml-5.20.2/build /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/CMakeFiles/binding_r_package.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Create R Package (64bit) cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/libSBML.so /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/libSBML/inst/libs cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/libSBML.R /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/libSBML/R cd /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r && /usr/bin/cmake -DR_INTERPRETER="/usr/bin/R" -P /builddir/build/BUILD/libsbml-5.20.2/src/bindings/r/create-r-package.cmake -- Created package: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/libSBML_5.20.2_R_x86_64-redhat-linux-gnu.tar.gz make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' [100%] Built target binding_r_package make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsbml-5.20.2/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.2/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/cmake/Modules/FindLIBSBML.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/cmake/Modules/FindLIBXML.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/cmake/Modules/FindBZ2.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/common/CompExtensionTypes.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/common/compfwd.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/extension/CompExtension.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/extension/CompModelPlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/extension/CompSBasePlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/sbml/CompBase.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/sbml/Deletion.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/sbml/ExternalModelDefinition.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/sbml/ListOfDeletions.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/sbml/ListOfModelDefinitions.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/sbml/ListOfPorts.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/sbml/ListOfReplacedElements.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/sbml/ListOfSubmodels.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/sbml/ModelDefinition.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/sbml/Port.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/sbml/ReplacedBy.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/sbml/ReplacedElement.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/sbml/Replacing.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/sbml/SBaseRef.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/sbml/Submodel.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/util/CompFlatteningConverter.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/util/SBMLFileResolver.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/util/SBMLResolver.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/util/SBMLResolverRegistry.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/util/SBMLUri.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/validator/CompConsistencyValidator.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/validator/CompSBMLError.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/validator/CompSBMLErrorTable.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/validator/CompUnitConsistencyValidator.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/validator/CompValidator.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/packages/comp/validator/constraints/ClassReplacements.h -- Installing: 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/builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/SBMLErrorLog.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/SBMLErrorTable.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/SBMLNamespaces.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/SBMLReader.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/SBMLTransforms.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/SBMLTypeCodes.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/SBMLTypes.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/SBMLVisitor.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/SBMLWriter.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/SBO.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/SBase.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/SimpleSpeciesReference.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/Species.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/SpeciesReference.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/SpeciesType.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/StoichiometryMath.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/SyntaxChecker.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/Trigger.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/Unit.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/UnitDefinition.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/UnitKind.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/common/libsbml-config-common.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/common/libsbml-config-packages.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/common/libsbml-namespace.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/common/libsbml-package.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/common/libsbml-version.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/include/sbml/extension/RegisterExtensions.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/libsbml.so.5.20.2 -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/libsbml.so.5 -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/libsbml.so -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/cmake/sbml-targets.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/cmake/sbml-targets-release.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/cmake/sbml-config-version.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/cmake/sbml-config.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/libsbml-static.a -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/cmake/sbml-static-targets.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/cmake/sbml-static-targets-release.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/cmake/sbml-static-config-version.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/cmake/sbml-static-config.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/perl5/vendor_perl/LibSBML.pod -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/perl5/vendor_perl/LibSBML.pm -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/perl5/vendor_perl/auto/LibSBML/LibSBML.so -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/python3.12/site-packages/libsbml/_libsbml.so -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/python3.12/site-packages/libsbml.pth -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/python3.12/site-packages/libsbml/libsbml.py -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/ruby/vendor_ruby/libSBML.so Notice: the libSBML R interface must be installed separately. To install it, please execute the following shell command: R CMD INSTALL /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r/libSBML_5.20.2_R_x86_64-redhat-linux-gnu.tar.gz -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/libsbml/COPYING.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/libsbml/FUNDING.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/libsbml/LICENSE.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/libsbml/NEWS.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/libsbml/README.md -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/libsbml/VERSION.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/pkgconfig/libsbml.pc make: Leaving directory '/builddir/build/BUILD/libsbml-5.20.2/build' + rm -rf /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/libsbml + mkdir -p /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/R/library + R CMD INSTALL -l /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/R/library build/src/bindings/r/libSBML_5.20.2_R_x86_64-redhat-linux-gnu.tar.gz * installing *binary* package ‘libSBML’ ... * DONE (libSBML) + rm -rf /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/R/library/libSBML/R.css + install -Dm0644 src/bindings/ruby/README.txt /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/doc/libsbml/README-ruby.txt + rm -fv /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64//usr/share/cmake/Modules/FindBZ2.cmake /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64//usr/share/cmake/Modules/FindLIBXML.cmake /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64//usr/share/cmake/Modules/FindZLIB.cmake removed '/builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64//usr/share/cmake/Modules/FindBZ2.cmake' removed '/builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64//usr/share/cmake/Modules/FindLIBXML.cmake' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 5.20.2-8.fc41 --unique-debug-suffix -5.20.2-8.fc41.x86_64 --unique-debug-src-base libsbml-5.20.2-8.fc41.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/libsbml-5.20.2 find-debuginfo: starting Extracting debug info from 5 files DWARF-compressing 5 files sepdebugcrcfix: Updated 5 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/libsbml-5.20.2-8.fc41.x86_64 cpio: build/src/L3Parser.cpp: Cannot stat: No such file or directory cpio: build/src/L3Parser.ypp: Cannot stat: No such file or directory 143362 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/libsbml-5.20.2-8.fc41.x86_64/src/sbml/packages/comp-register.cxx is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/libsbml-5.20.2-8.fc41.x86_64/src/sbml/packages/fbc-register.cxx is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/libsbml-5.20.2-8.fc41.x86_64/src/sbml/packages/groups-register.cxx is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/libsbml-5.20.2-8.fc41.x86_64/src/sbml/packages/render-register.cxx is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib64/python3.12 using python3.12 Bytecompiling .py files below /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/lib/debug/usr/lib64/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.iX9eJp + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS ~/build/BUILD/libsbml-5.20.2/build ~/build/BUILD/libsbml-5.20.2 + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsbml-5.20.2 + pushd build + ctest --force-new-ctest-process -VV -E 'test_ruby_binding|test_perl_binding|test_python_binding' UpdateCTestConfiguration from :/builddir/build/BUILD/libsbml-5.20.2/build/DartConfiguration.tcl Parse Config file:/builddir/build/BUILD/libsbml-5.20.2/build/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/libsbml-5.20.2/build/DartConfiguration.tcl Parse Config file:/builddir/build/BUILD/libsbml-5.20.2/build/DartConfiguration.tcl Test project /builddir/build/BUILD/libsbml-5.20.2/build Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test_comp_extensions_run 1: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/extension/test/test_comp_extensions 1: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/extension/test 1: Environment variables: 1: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/extension/test 1: Test timeout computed to be: 3000 1: Running suite(s): SBMLCompExtensionObjects 1: TestMultipleNamespaces 1: SBMLCompCheckConsistency 1: 100%: Checks: 14, Failures: 0, Errors: 0 1/68 Test #1: test_comp_extensions_run ...................... Passed 0.14 sec test 2 Start 2: test_comp_sbase_run 2: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test/test_comp_sbase 2: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/sbml/test 2: Environment variables: 2: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/sbml/test 2: Test timeout computed to be: 3000 2: Running suite(s): SBMLCompSBaseObjects 2: SBMLCompIdNamspace 2: SBMLCompSBaseObjects 2: comp_deletion 2: comp_externalModelDefinition 2: comp_modelDefinition 2: comp_port 2: comp_replacedBy 2: comp_replacedElement 2: comp_sBaseRef 2: comp_submodel 2: 100%: Checks: 105, Failures: 0, Errors: 0 2/68 Test #2: test_comp_sbase_run ........................... Passed 0.15 sec test 3 Start 3: test_comp_util_run 3: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/util/test/test_comp_util 3: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/util/test 3: Environment variables: 3: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/util/test 3: Test timeout computed to be: 3000 3: Running suite(s): SBMLCompURIResolvers 3: SBMLCompLevelVersionConversion 3: SBMLCompFlatteningUnknownPackageRefs 3: SBMLCompFlatteningErrorMessages 3: SBMLCompFlatteningConverter 3: ExternalModelResolving 3: SBMLCompFlatteningNewFlags 3: SBMLCompFlatteningConverterStripPackage 3: 100%: Checks: 365, Failures: 0, Errors: 0 3/68 Test #3: test_comp_util_run ............................ Passed 1.82 sec test 4 Start 4: test_comp_validator_run 4: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/validator/test/test_comp_validator "/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/test" 4: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/comp/validator/test 4: Environment variables: 4: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/test 4: Test timeout computed to be: 3000 4: 4: Validator testrunner 4: ==================== 4: using test data from : /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/comp/validator/test/test-data 4: 4: Testing General XML Consistency Constraints (20000 - 29999). 4: 100%: Checks: 280, Failures: 0 4: Testing Id Consistency Constraints (10300 - 10399). 4: 100%: Checks: 14, Failures: 0 4: Testing Unit Consistency Constraints (10500 - 10599). 4: 100%: Checks: 22, Failures: 0 4/68 Test #4: test_comp_validator_run ....................... Passed 0.21 sec test 5 Start 5: test_sbml_package_fbc_run 5: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/extension/test/test_sbml_package_fbc 5: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/extension/test 5: Environment variables: 5: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/extension/test 5: Test timeout computed to be: 3000 5: Running suite(s): FbcExtension 5: WriteFbcExtension 5: ReadFbcExtension 5: FbcAssociation 5: 100%: Checks: 38, Failures: 0, Errors: 0 5/68 Test #5: test_sbml_package_fbc_run ..................... Passed 0.08 sec test 6 Start 6: test_fbc_validator_run 6: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/validator/test/test_fbc_validator "/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/test" 6: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/fbc/validator/test 6: Environment variables: 6: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/test 6: Test timeout computed to be: 3000 6: 6: Validator testrunner 6: ==================== 6: using test data from : /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/fbc/validator/test/test-data 6: 6: Testing General XML Consistency Constraints (20000 - 29999). 6: 100%: Checks: 248, Failures: 0 6: Testing Id Consistency Constraints (10300 - 10399). 6: 100%: Checks: 13, Failures: 0 6/68 Test #6: test_fbc_validator_run ........................ Passed 0.22 sec test 7 Start 7: test_extension_package_groups_run 7: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/groups/extension/test/test_extension_package_groups 7: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/groups/extension/test 7: Environment variables: 7: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/extension/test 7: Test timeout computed to be: 3000 7: Running suite(s): GroupsExtension 7: WriteGroupsExtension 7: ReadGroupsExtension 7: GroupsModelPlugin 7: 100%: Checks: 25, Failures: 0, Errors: 0 7/68 Test #7: test_extension_package_groups_run ............. Passed 0.04 sec test 8 Start 8: test_groups_validator_run 8: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/groups/validator/test/test_groups_validator "/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/test" 8: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/groups/validator/test 8: Environment variables: 8: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/test 8: Test timeout computed to be: 3000 8: 8: Validator testrunner 8: ==================== 8: using test data from : /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/groups/validator/test/test-data 8: 8: Testing General XML Consistency Constraints (20000 - 29999). 8: 100%: Checks: 95, Failures: 0 8: Testing Id Consistency Constraints (10300 - 10399). 8: 100%: Checks: 11, Failures: 0 8/68 Test #8: test_groups_validator_run ..................... Passed 0.02 sec test 9 Start 9: test_l3v2extendedmath_validator_run 9: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/validator/test/test_l3v2extendedmath_validator "/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/test" 9: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/validator/test 9: Environment variables: 9: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/test 9: Test timeout computed to be: 3000 9: 9: Validator testrunner 9: ==================== 9: using test data from : /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/validator/test/test-data 9: 9: Testing MathML Consistency Constraints (10200 - 10299). 9: 100%: Checks: 4, Failures: 0 9: Testing Unit Consistency Constraints (10500 - 10599). 9: 100%: Checks: 6, Failures: 0 9/68 Test #9: test_l3v2extendedmath_validator_run ........... Passed 0.01 sec test 10 Start 10: test_extension_package_l3v2extendedmath_run 10: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/extension/test/test_extension_package_l3v2extendedmath 10: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/l3v2extendedmath/extension/test 10: Environment variables: 10: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/l3v2extendedmath/extension/test 10: Test timeout computed to be: 3000 10: Running suite(s): L3v2EMExtension 10: WriteL3v2EMExtension 10: ReadL3v2EMExtension 10: ReadWriteL3v2Infix 10: 100%: Checks: 18, Failures: 0, Errors: 0 10/68 Test #10: test_extension_package_l3v2extendedmath_run ... Passed 0.03 sec test 11 Start 11: test_sbml_package_layout_run 11: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test/test_sbml_package_layout 11: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/sbml/test 11: Environment variables: 11: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/sbml/test 11: Test timeout computed to be: 3000 11: Running suite(s): Point 11: Dimensions 11: BoundingBox 11: LineSegment 11: CubicBezier 11: Curve 11: GraphicalObject 11: CompartmentGlyph 11: SpeciesGlyph 11: ReactionGlyph 11: GeneralGlyph 11: ReferenceGlyph 11: SpeciesReferenceGlyph 11: TextGlyph 11: Layout 11: LayoutCreation 11: LayoutFormatter 11: SBMLHandler 11: LayoutWriting 11: 100%: Checks: 288, Failures: 0, Errors: 0 11/68 Test #11: test_sbml_package_layout_run .................. Passed 0.41 sec test 12 Start 12: test_layout_validator_run 12: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/validator/test/test_layout_validator "/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/validator/test" 12: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/layout/validator/test 12: Environment variables: 12: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/validator/test 12: Test timeout computed to be: 3000 12: 12: Validator testrunner 12: ==================== 12: using test data from : /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/layout/validator/test/test-data 12: 12: Testing General XML Consistency Constraints (20000 - 29999). 12: 100%: Checks: 223, Failures: 0 12: Testing Id Consistency Constraints (10300 - 10399). 12: 100%: Checks: 18, Failures: 0 12/68 Test #12: test_layout_validator_run ..................... Passed 0.26 sec test 13 Start 13: test_sbml_package_multi_run 13: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/extension/test/test_sbml_package_multi 13: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/extension/test 13: Environment variables: 13: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/extension/test 13: Test timeout computed to be: 3000 13: Running suite(s): MultiExtension 13: MultiCheckConsistency 13: MultiAST 13: 100%: Checks: 18, Failures: 0, Errors: 0 13/68 Test #13: test_sbml_package_multi_run ................... Passed 0.03 sec test 14 Start 14: test_multi_validator_run 14: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/validator/test/test_multi_validator "/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/test" 14: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/multi/validator/test 14: Environment variables: 14: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/test 14: Test timeout computed to be: 3000 14: 14: Validator testrunner 14: ==================== 14: using test data from : /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/multi/validator/test/test-data 14: 14: Testing MathML Consistency Constraints (10200 - 10299). 14: 100%: Checks: 5, Failures: 0 14: Testing General XML Consistency Constraints (20000 - 29999). 14: 100%: Checks: 123, Failures: 0 14: Testing Id Consistency Constraints (10300 - 10999). 14: 100%: Checks: 16, Failures: 0 14/68 Test #14: test_multi_validator_run ...................... Passed 0.04 sec test 15 Start 15: test_extension_package_qual_run 15: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/extension/test/test_extension_package_qual 15: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/extension/test 15: Environment variables: 15: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/extension/test 15: Test timeout computed to be: 3000 15: Running suite(s): QualExtension 15: WriteQualExtension 15: ReadQualExtension 15: GetAllElements 15: 100%: Checks: 20, Failures: 0, Errors: 0 15/68 Test #15: test_extension_package_qual_run ............... Passed 0.03 sec test 16 Start 16: test_sbml_package_qual_run 16: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/sbml/test/test_sbml_package_qual 16: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/sbml/test 16: Environment variables: 16: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/sbml/test 16: Test timeout computed to be: 3000 16: Running suite(s): Input 16: Output 16: FunctionTerm 16: Transition 16: QualitativeSpecies 16: DefaultTerm 16: ListOfFunctionTerms 16: CopyAndClone 16: 100%: Checks: 73, Failures: 0, Errors: 0 16/68 Test #16: test_sbml_package_qual_run .................... Passed 0.09 sec test 17 Start 17: test_qual_validator_run 17: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/validator/test/test_qual_validator "/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/test" 17: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/qual/validator/test 17: Environment variables: 17: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/test 17: Test timeout computed to be: 3000 17: 17: Validator testrunner 17: ==================== 17: using test data from : /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/qual/validator/test/test-data 17: 17: Testing General XML Consistency Constraints (20000 - 29999). 17: 100%: Checks: 81, Failures: 0 17: Testing Id Consistency Constraints (10300 - 10399). 17: 100%: Checks: 4, Failures: 0 17: Testing Math Consistency Constraints (10200 - 10299). 17: 100%: Checks: 3, Failures: 0 17/68 Test #17: test_qual_validator_run ....................... Passed 0.06 sec test 18 Start 18: test_sbml_package_render_run 18: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test/test_sbml_package_render 18: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/sbml/test 18: Environment variables: 18: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/sbml/test 18: Test timeout computed to be: 3000 18: Running suite(s): RenderExtension 18: RelAbsVector 18: ColorDefinition 18: GradientStop 18: RenderPoint 18: RenderCubicBezier 18: GradientBaseTest 18: LinearGradient 18: RadialGradient 18: Transformation 18: Transformation2D 18: Image 18: GraphicalPrimitive1D 18: RenderCurve 18: Text 18: GraphicalPrimitive2D 18: Rectangle 18: Ellipse 18: Polygon 18: Group 18: LineEnding 18: Style 18: GlobalStyle 18: LocalStyle 18: RenderInformationBase 18: GlobalRenderInformation 18: LocalRenderInformation 18: RenderReading 18: RenderWriting 18: 100%: Checks: 136, Failures: 0, Errors: 0 18/68 Test #18: test_sbml_package_render_run .................. Passed 0.42 sec test 19 Start 19: test_render_validator_run 19: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/validator/test/test_render_validator "/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/test" 19: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/packages/render/validator/test 19: Environment variables: 19: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/test 19: Test timeout computed to be: 3000 19: 19: Validator testrunner 19: ==================== 19: using test data from : /builddir/build/BUILD/libsbml-5.20.2/src/sbml/packages/render/validator/test/test-data 19: 19: Testing General XML Consistency Constraints (20000 - 29999). 19: 100%: Checks: 111, Failures: 0 19/68 Test #19: test_render_validator_run ..................... Passed 0.05 sec test 20 Start 20: test_sbml_annotation_run 20: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test/test_sbml_annotation 20: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/annotation/test 20: Environment variables: 20: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/annotation/test 20: Test timeout computed to be: 3000 20: Running suite(s): CVTerms 20: CVTerms_newSetters 20: ModelHistory 20: Date_newSetters 20: ModelCreator_newSetters 20: ModelHistory_newSetters 20: CopyAndClone 20: RDFAnnotation 20: RDFAnnotation2 20: Validation 20: RDFAnnotation_C 20: L3ModelHistory 20: SyncAnnotation 20: RDFAnnotationMetaid 20: RDFAnnotationNestedCVTerm 20: RDFAnnotationV4 20: UnusualRDFAnnotation 20: 100%: Checks: 193, Failures: 0, Errors: 0 20/68 Test #20: test_sbml_annotation_run ...................... Passed 0.36 sec test 21 Start 21: test_sbml_conversion_run 21: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/conversion/test/test_sbml_conversion 21: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/conversion/test 21: Environment variables: 21: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/conversion/test 21: Test timeout computed to be: 3000 21: Running suite(s): ConversionOption 21: SBMLRuleConverter 21: ConversionProperties 21: SBMLConverterRegistry 21: UnitsConverter 21: UnitsConverter2 21: UnitsConverterL2 21: InferUnitsConverter 21: StripPackageConverter 21: LevelVersionConverter 21: RateOfConverter 21: SBMLRateRuleConverter 21: 100%: Checks: 188, Failures: 0, Errors: 0 21/68 Test #21: test_sbml_conversion_run ...................... Passed 0.59 sec test 22 Start 22: test_sbml_extension_run 22: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/extension/test/test_sbml_extension 22: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/extension/test 22: Environment variables: 22: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/extension/test 22: Test timeout computed to be: 3000 22: Running suite(s): SBaseExtensionPoint 22: SBasePlugin 22: SBasePluginCreator 22: SBasePluginCreatorBase 22: SBMLDocumentPlugin 22: SBMLExtension 22: SBMLExtensionNamespaces 22: SBMLExtensionRegistry 22: TestUnknownPackages 22: 100%: Checks: 30, Failures: 0, Errors: 0 22/68 Test #22: test_sbml_extension_run ....................... Passed 0.04 sec test 23 Start 23: test_sbml_math_run 23: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/math/test/test_sbml_math 23: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/math/test 23: Environment variables: 23: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/math/test 23: Test timeout computed to be: 3000 23: Running suite(s): ASTNode 23: FormulaFormatter 23: FormulaParser 23: L3FormulaFormatter 23: L3FormulaParser 23: L3FormulaParserC 23: FormulaTokenizer 23: ReadMathML 23: WriteMathML 23: WriteMathMLFromAST 23: test-data/mathML_1.xml 23: test-data/mathML_2.xml 23: TestValidASTNode 23: TestChildFunctions 23: TestGetValue 23: test-data/L3V2Math.xml 23: TestInferRnFunctions 23: TestDerivFunctions 23: 100%: Checks: 739, Failures: 0, Errors: 0 23/68 Test #23: test_sbml_math_run ............................ Passed 0.94 sec test 24 Start 24: test_sbml_sbml_run 24: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test/test_sbml_sbml 24: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/test 24: Environment variables: 24: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/test 24: Test timeout computed to be: 3000 24: Running suite(s): ReadSBML 24: SBMLValidator API 24: RenameIDs 24: RemoveFromParent 24: GetMultipleObjects 24: WriteSBML 24: WriteL3SBML 24: WriteL3V2SBML 24: AlgebraicRule 24: AssignmentRule 24: Compartment 24: L3_Compartment 24: Compartment_newSetters 24: CompartmentType 24: CompartmentType_newSetters 24: CompartmentVolumeRule 24: Constraint 24: Constraint_newSetters 24: Delay 24: Event 24: L3_Event 24: Event_newSetters 24: EventAssignment 24: EventAssignment_newSetters 24: FunctionDefinition 24: FunctionDefinition_newSetters 24: InitialAssignment 24: InitialAssignment_newSetters 24: KineticLaw 24: KineticLaw_newSetters 24: L3_KineticLaw 24: ListOf 24: Model 24: L3_Model 24: Model_newSetters 24: ModifierSpeciesReference 24: Parameter 24: L3_Parameter 24: L3_LocalParameter 24: Parameter_newSetters 24: ParameterRule 24: Priority 24: RateRule 24: Reaction 24: L3_Reaction 24: Reaction_newSetters 24: Rule 24: Rule_newSetters 24: SBase 24: SBase_newSetters 24: Species 24: L3_Species 24: Species_newSetters 24: SpeciesReference 24: L3_SpeciesReference 24: SpeciesReference_newSetters 24: SpeciesConcentrationRule 24: SpeciesType 24: SpeciesType_newSetters 24: StoichiometryMath 24: Trigger 24: L3Trigger 24: Unit 24: L3_Unit 24: Unit_newSetters 24: UnitDefinition 24: UnitDefinition_newSetters 24: UnitKind 24: CopyAndClone 24: SBMLConvert 24: SBMLConvertStrict 24: SBMLConvertFromL3V2 24: SBMLDocument 24: SBMLError 24: ErrorLog 24: test-data/l1v1-branch.xml 24: test-data/l1v1-units.xml 24: test-data/l1v1-rules.xml 24: test-data/l1v1-minimal.xml 24: test-data/l2v1-assignment.xml 24: test-data/l2v2-newComponents.xml 24: test-data/l2v3-all.xml 24: test-data/l2v4-new.xml 24: test-data/l3v1-new.xml 24: test-data/l2v5-all.xml 24: test-data/l3v2-all.xml 24: test-data/l3v2-no-model.xml 24: test-data/l3v2-empty-lo-1.xml 24: test-data/l3v2-empty-lo-2.xml 24: test-data/l3v2-empty-math.xml 24: test-data/l3v2-empty-event.xml 24: test-data/l3v2-empty-event2.xml 24: ConsistencyChecks 24: ParentObject 24: AncestorObject 24: InternalConsistencyChecks 24: HasReqdAtt 24: HasReqdElements 24: SBMLNamespaces 24: SyntaxChecker 24: SBMLConstructorException 24: SBMLTransforms 24: GetMultipleObjects 24: LevelCompatibility 24: SBaseIdName 24: Generic Attribute Functions 24: 100%: Checks: 1746, Failures: 0, Errors: 0 24/68 Test #24: test_sbml_sbml_run ............................ Passed 2.53 sec test 25 Start 25: test_sbml_units_run 25: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/units/test/test_sbml_units 25: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/units/test 25: Environment variables: 25: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/units/test 25: Test timeout computed to be: 3000 25: Running suite(s): UtilsUnit 25: UtilsUnitDefinition 25: UnitFormulaFormatter 25: UnitFormulaFormatter1 25: FormulaUnitData 25: FormulaUnitDataMap 25: DerivedUnitDefinition 25: UnitFormulaFormatter2 25: CalcUnitDefinition 25: UnitFormulaFormatter3 25: DerivedUnitDefinitionUndefined 25: 100%: Checks: 178, Failures: 0, Errors: 0 25/68 Test #25: test_sbml_units_run ........................... Passed 0.51 sec test 26 Start 26: test_sbml_util_run 26: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/util/test/test_sbml_util 26: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/util/test 26: Test timeout computed to be: 3000 26: Running suite(s): memory 26: util 26: List 26: Stack 26: StringBuffer 26: 100%: Checks: 57, Failures: 0, Errors: 0 26/68 Test #26: test_sbml_util_run ............................ Passed 0.04 sec test 27 Start 27: test_sbml_validator_run 27: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/validator/test/test_sbml_validator "/builddir/build/BUILD/libsbml-5.20.2/src/sbml/validator/test" 27: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/validator/test 27: Test timeout computed to be: 3000 27: 27: Validator testrunner 27: ==================== 27: using test data from : /builddir/build/BUILD/libsbml-5.20.2/src/sbml/validator/test/test-data 27: using conversion test data from: /builddir/build/BUILD/libsbml-5.20.2/src/sbml/validator/test/test-data-conversion 27: 27: Testing Bad XML Constraints (0000 - 10000). 27: 100%: Checks: 55, Failures: 0 27: Testing General XML Consistency Constraints (10000 - 10199). 27: 100%: Checks: 198, Failures: 0 27: Testing General MathML Consistency Constraints (10200 - 10299). 27: 100%: Checks: 518, Failures: 0 27: Testing Id Consistency Constraints (10300 - 10399). 27: 100%: Checks: 509, Failures: 0 27: Testing General Annotation Consistency Constraints (10400 - 10499). 27: 100%: Checks: 65, Failures: 0 27: Testing Unit Consistency Constraints (10500 - 10599). 27: 100%: Checks: 1172, Failures: 0 27: Testing Unit Consistency Constraints (20000 - 29999). 27: 100%: Checks: 362, Failures: 0 27: Testing Overdetermined Constraints (10600 - 10699). 27: 100%: Checks: 31, Failures: 0 27: Testing SBO Consistency Constraints (10700 - 10799). 27: 100%: Checks: 206, Failures: 0 27: Testing General Notes Consistency Constraints (10800 - 19999). 27: 100%: Checks: 92, Failures: 0 27: Testing Model Consistency Constraints (20000 - 29999). 27: 100%: Checks: 2300, Failures: 0 27: Testing L1 Compatibility Constraints (91000 - 91999). 27: 100%: Checks: 91, Failures: 0 27: Testing L2v1 Compatibility Constraints (92000 - 92999). 27: 100%: Checks: 38, Failures: 0 27: Testing L2v2 Compatibility Constraints (93000 - 93999). 27: 100%: Checks: 23, Failures: 0 27: Testing L2v3 Compatibility Constraints (94000 - 94999). 27: 100%: Checks: 22, Failures: 0 27: Testing L2v4 Compatibility Constraints (95000 - 95999). 27: 100%: Checks: 21, Failures: 0 27: Testing L3v1 Compatibility Constraints (96000 - 96999). 27: 100%: Checks: 31, Failures: 0 27: Testing L1 for New Compatibility Constraints (98000 - 98999). 27: 100%: Checks: 39, Failures: 0 27: Testing L2v1 for New Compatibility Constraints (98000 - 98999). 27: 100%: Checks: 39, Failures: 0 27: Testing L2v2 for New Compatibility Constraints (98000 - 98999). 27: 100%: Checks: 39, Failures: 0 27: Testing L2v3 for New Compatibility Constraints (98000 - 98999). 27: 100%: Checks: 39, Failures: 0 27: Testing L3v1 for New Compatibility Constraints (98000 - 98999). 27: 100%: Checks: 39, Failures: 0 27: Testing New Compatibility Constraints (98000 - 98999). 27: 100%: Checks: 39, Failures: 0 27: Testing Additional SBML Constraints (99100 - 99108). 27: 100%: Checks: 31, Failures: 0 27: Testing Additional SBML Constraints (99129 - 99199). 27: 100%: Checks: 56, Failures: 0 27: Testing Additional Math Constraints (99200 - 99299). 27: 100%: Checks: 140, Failures: 0 27: Testing Additional SBML Constraints (99300 - 99399). 27: 100%: Checks: 16, Failures: 0 27: Testing Additional Annotation Constraints (99400 - 99499). 27: 100%: Checks: 28, Failures: 0 27: Testing Additional Unit Constraints (99127 - 99128). 27: 100%: Checks: 36, Failures: 0 27: Testing Additional Unit Constraints (99500 - 99599). 27: 100%: Checks: 175, Failures: 0 27: Testing Additional SBO Constraints (99700 - 99799). 27: 100%: Checks: 30, Failures: 0 27: Testing Modeling Practice Constraints (80000 - 89999). 27: 100%: Checks: 56, Failures: 0 27/68 Test #27: test_sbml_validator_run ....................... Passed 2.01 sec test 28 Start 28: test_sbml_xml_run 28: Test command: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/xml/test/test_sbml_xml 28: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/sbml/xml/test 28: Environment variables: 28: srcdir=/builddir/build/BUILD/libsbml-5.20.2/src/sbml/xml/test 28: Test timeout computed to be: 3000 28: Running suite(s): XMLAttributes 28: CopyAndClone 28: XMLNamespaces 28: XMLTriple 28: XMLToken 28: XMLToken_newSetters 28: XMLNode 28: XMLNode_newSetters 28: XMLError 28: XMLErrorC 28: XMLErrorLog 28: XMLInputStream 28: XMLOutputStream 28: 28: XMLAttributesC 28: XMLExceptions 28: 100%: Checks: 131, Failures: 0, Errors: 0 28/68 Test #28: test_sbml_xml_run ............................. Passed 0.15 sec test 29 Start 29: test_python_printversion 29: Test command: /usr/bin/python3 "-c" "import libsbml; assert libsbml.getLibSBMLDottedVersion() == '5.20.2'" "-p" "/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python" "-b" "/builddir/build/BUILD/libsbml-5.20.2/src/bindings/python/test" 29: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 29: Environment variables: 29: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 29: Test timeout computed to be: 3000 29/68 Test #29: test_python_printversion ...................... Passed 0.43 sec test 30 Start 30: test_python_addCVTerms 30: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/addCVTerms.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addCVTerms.out.xml" 30: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 30: Environment variables: 30: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 30: Test timeout computed to be: 3000 30/68 Test #30: test_python_addCVTerms ........................ Passed 0.13 sec test 31 Start 31: test_python_addingEvidenceCodes_1 31: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/addingEvidenceCodes_1.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addingEvidenceCodes_1.out.xml" 31: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 31: Environment variables: 31: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 31: Test timeout computed to be: 3000 31/68 Test #31: test_python_addingEvidenceCodes_1 ............. Passed 0.13 sec test 32 Start 32: test_python_addingEvidenceCodes_2 32: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/addingEvidenceCodes_2.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addingEvidenceCodes_2.out.xml" 32: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 32: Environment variables: 32: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 32: Test timeout computed to be: 3000 32/68 Test #32: test_python_addingEvidenceCodes_2 ............. Passed 0.13 sec test 33 Start 33: test_python_addModelHistory 33: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/addModelHistory.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addModelHistory.out.xml" 33: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 33: Environment variables: 33: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 33: Test timeout computed to be: 3000 33: Status for addCreator: succeeded 33: Set created date: succeeded 33: Set modified date: succeeded 33: Set model history: unknown 33/68 Test #33: test_python_addModelHistory ................... Passed 0.13 sec test 34 Start 34: test_python_append_to_note 34: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/append_to_note.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekineticext.xml" "veq" "a new note" "append_to_note.out.xml" 34: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 34: Environment variables: 34: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 34: Test timeout computed to be: 3000 34: Body before change: 34: 34:

Some notes

34: 34: 34: Body after change: 34: 34:

Some notes

a new note 34/68 Test #34: test_python_append_to_note .................... Passed 0.14 sec test 35 Start 35: test_python_appendAnnotation 35: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/appendAnnotation.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "appendAnnotation.out.xml" 35: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 35: Environment variables: 35: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 35: Test timeout computed to be: 3000 35/68 Test #35: test_python_appendAnnotation .................. Passed 0.13 sec test 36 Start 36: test_python_convertSBML 36: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/convertSBML.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "convertSBML.out.xml" 36: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 36: Environment variables: 36: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 36: Test timeout computed to be: 3000 36: Attempting to convert Level 3 Version 1 model to Level 3 Version 2. 36: 36: Conversion completed. 36: 36/68 Test #36: test_python_convertSBML ....................... Passed 0.14 sec test 37 Start 37: test_python_createExampleSBML 37: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/createExampleSBML.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "createExampleSBMLy.out.xml" 37: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 37: Environment variables: 37: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 37: Test timeout computed to be: 3000 37: line 1: (99505 [Warning]) In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. 37: The units of the expression 'f(S1) * compartmentOne / t' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate. 37: 37: Wrote file 'enzymaticreaction.xml' 37: Wrote file 'units.xml' 37: 37: Notice: encountered 1 validation warning in model 'functionExample'. 37: 37: Wrote file 'functiondef.xml' 37/68 Test #37: test_python_createExampleSBML ................. Passed 0.15 sec test 38 Start 38: test_python_createSimpleModel 38: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/createSimpleModel.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "createSimpleModel.out.xml" 38: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 38: Environment variables: 38: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 38: Test timeout computed to be: 3000 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: 38: k 38: s1 38: c1 38: 38: 38: 38: 38: 38: 38: 38: 38/68 Test #38: test_python_createSimpleModel ................. Passed 0.15 sec test 39 Start 39: test_python_echoSBML 39: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/echoSBML.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "echoSBML.out.xml" 39: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 39: Environment variables: 39: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 39: Test timeout computed to be: 3000 39: [OK] Echoed /builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml to echoSBML.out.xml 39/68 Test #39: test_python_echoSBML .......................... Passed 0.13 sec test 40 Start 40: test_python_evaluateCustomMath 40: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/evaluateCustomMath.py" "2*3+4" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 40: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 40: Environment variables: 40: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 40: Test timeout computed to be: 3000 40: 2*3+4 = 10.0 40/68 Test #40: test_python_evaluateCustomMath ................ Passed 0.13 sec test 41 Start 41: test_python_getAllElementsWithNotes 41: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/getAllElementsWithNotes.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 41: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 41: Environment variables: 41: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 41: Test timeout computed to be: 3000 41: 41: filename: /builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml 41: read time (ms): 1.192138671875 41: searching ......: 41: search time (ms): 0.10693359375 41: elements with notes: 0 41/68 Test #41: test_python_getAllElementsWithNotes ........... Passed 0.13 sec test 42 Start 42: test_python_inlineInitialAssignments 42: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/inlineInitialAssignments.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "inlineInitialAssignments.out.xml" 42: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 42: Environment variables: 42: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 42: Test timeout computed to be: 3000 42/68 Test #42: test_python_inlineInitialAssignments .......... Passed 0.13 sec test 43 Start 43: test_python_printAnnotation 43: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/printAnnotation.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 43: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 43: Environment variables: 43: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 43: Test timeout computed to be: 3000 43: filename: /builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml 43: 43/68 Test #43: test_python_printAnnotation ................... Passed 0.13 sec test 44 Start 44: test_python_printMath 44: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/printMath.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 44: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 44: Environment variables: 44: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 44: Test timeout computed to be: 3000 44: 44: Reaction 1, formula: comp * (kon * E * S - koff * ES) 44: 44: Reaction 2, formula: comp * kcat * ES 44: 44: 44: 44/68 Test #44: test_python_printMath ......................... Passed 0.13 sec test 45 Start 45: test_python_printRegisteredPackages 45: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/printRegisteredPackages.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "printRegisteredPackages.out.xml" 45: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 45: Environment variables: 45: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 45: Test timeout computed to be: 3000 45: This version of LibSBML: 5.20.2 includes: 45: 45: comp 45: fbc 45: groups 45: layout 45: render 45: l3v2extendedmath 45: multi 45: qual 45: 45: 45/68 Test #45: test_python_printRegisteredPackages ........... Passed 0.13 sec test 46 Start 46: test_python_printSBML 46: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/printSBML.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 46: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 46: Environment variables: 46: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 46: Test timeout computed to be: 3000 46: 46: File: /builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml (Level 3, version 1) 46: id: (empty) 46: functionDefinitions: 0 46: unitDefinitions: 2 46: compartmentTypes: 0 46: specieTypes: 0 46: compartments: 1 46: species: 4 46: parameters: 0 46: initialAssignments: 0 46: rules: 0 46: constraints: 0 46: reactions: 2 46: events: 0 46: 46: 46/68 Test #46: test_python_printSBML ......................... Passed 0.13 sec test 47 Start 47: test_python_printsupported 47: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/printsupported.py" 47: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 47: Environment variables: 47: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 47: Test timeout computed to be: 3000 47: Supported by LibSBML 5.20.2 47: 47: SBML Level: 1 Version: 1 47: SBML Level: 1 Version: 2 47: SBML Level: 2 Version: 1 47: SBML Level: 2 Version: 2 47: SBML Level: 2 Version: 3 47: SBML Level: 2 Version: 4 47: SBML Level: 2 Version: 5 47: SBML Level: 3 Version: 1 47: SBML Level: 3 Version: 2 47: 47/68 Test #47: test_python_printsupported .................... Passed 0.13 sec test 48 Start 48: test_python_printUnits 48: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/printUnits.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 48: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 48: Environment variables: 48: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 48: Test timeout computed to be: 3000 48: Species 0: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0) 48: Species 1: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0) 48: Species 2: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0) 48: Species 3: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0) 48: Compartment 0: litre (exponent = 1, multiplier = 1, scale = 0) 48: Reaction 0: 48: Kinetic Law: second (exponent = -1, multiplier = 1, scale = 0), mole (exponent = 1, multiplier = 1, scale = 0) 48: undeclared units: no 48: Reaction 1: 48: Kinetic Law: second (exponent = -1, multiplier = 1, scale = 0), mole (exponent = 1, multiplier = 1, scale = 0) 48: undeclared units: no 48/68 Test #48: test_python_printUnits ........................ Passed 0.13 sec test 49 Start 49: test_python_promoteParameters 49: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/promoteParameters.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "promoteParameters.out.xml" 49: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 49: Environment variables: 49: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 49: Test timeout computed to be: 3000 49: [OK] wrote promoteParameters.out.xml 49/68 Test #49: test_python_promoteParameters ................. Passed 0.13 sec test 50 Start 50: test_python_readSBML 50: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/readSBML.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 50: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 50: Environment variables: 50: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 50: Test timeout computed to be: 3000 50: 50: filename: /builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml 50: file size: 3930 50: read time (ms): 1.0800361633300781 50: validation error(s): 0 50: 50/68 Test #50: test_python_readSBML .......................... Passed 0.13 sec test 51 Start 51: test_python_replaceOneFD 51: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/replaceOneFD.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/functiondef.xml" "f" "reaction_1" "replaceOneFD.out.xml" 51: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 51: Environment variables: 51: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 51: Test timeout computed to be: 3000 51/68 Test #51: test_python_replaceOneFD ...................... Passed 0.13 sec test 52 Start 52: test_python_setIdFromNames 52: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/setIdFromNames.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "setIdFromNames.out.xml" 52: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 52: Environment variables: 52: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 52: Test timeout computed to be: 3000 52: 52: filename: /builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml 52: read time (ms): 0.980224609375 52: rename time (ms): 0.08251953125 52: write time (ms): 0.322998046875 52: 52/68 Test #52: test_python_setIdFromNames .................... Passed 0.13 sec test 53 Start 53: test_python_setNamesFromIds 53: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/setNamesFromIds.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "setNamesFromIds.out.xml" 53: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 53: Environment variables: 53: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 53: Test timeout computed to be: 3000 53: 53: filename: /builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml 53: read time (ms): 0.99169921875 53: rename time (ms): 0.15185546875 53: write time (ms): 0.3232421875 53: 53/68 Test #53: test_python_setNamesFromIds ................... Passed 0.13 sec test 54 Start 54: test_python_unsetAnnotation 54: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/unsetAnnotation.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "unsetAnnotation.out.xml" 54: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 54: Environment variables: 54: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 54: Test timeout computed to be: 3000 54/68 Test #54: test_python_unsetAnnotation ................... Passed 0.13 sec test 55 Start 55: test_python_unsetNotes 55: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/unsetNotes.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "unsetNotes.out.xml" 55: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 55: Environment variables: 55: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 55: Test timeout computed to be: 3000 55/68 Test #55: test_python_unsetNotes ........................ Passed 0.13 sec test 56 Start 56: test_python_validateSBML 56: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/validateSBML.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 56: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 56: Environment variables: 56: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 56: Test timeout computed to be: 3000 56: --------------------------------------------------------------------------- 56: filename : /builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml 56: file size (byte) : 3930 56: read time (ms) : 0.985622 56: c-check time (ms) : 2.019405 56: validation error(s) : 0 56: (consistency error(s)): 0 56: validation warning(s) : 0 56: (consistency warning(s)): 0 56: --------------------------------------------------------------------------- 56: Validated 1 files, 1 valid files, 0 invalid files 56/68 Test #56: test_python_validateSBML ...................... Passed 0.13 sec test 57 Start 57: test_python_stringInput 57: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/stringInput.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 57: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 57: Environment variables: 57: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 57: Test timeout computed to be: 3000 57: filename: /builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/from-spec/level-3/enzymekinetics.xml 57: 57: 57: 57/68 Test #57: test_python_stringInput ....................... Passed 0.13 sec test 58 Start 58: test_python_stripPackage 58: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/stripPackage.py" "/builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/fbc/fbc_example1.xml" "fbc" "stripPackage.out.xml" 58: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 58: Environment variables: 58: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 58: Test timeout computed to be: 3000 58: [OK] stripped package 'fbc' from /builddir/build/BUILD/libsbml-5.20.2/examples/sample-models/fbc/fbc_example1.xml to stripPackage.out.xml 58/68 Test #58: test_python_stripPackage ...................... Passed 0.13 sec test 59 Start 59: test_python_fbc_fbc_example1 59: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/fbc/fbc_example1.py" 59: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 59: Environment variables: 59: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 59: Test timeout computed to be: 3000 59/68 Test #59: test_python_fbc_fbc_example1 .................. Passed 0.14 sec test 60 Start 60: test_python_groups_groups_example1 60: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/groups/groups_example1.py" 60: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 60: Environment variables: 60: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 60: Test timeout computed to be: 3000 60/68 Test #60: test_python_groups_groups_example1 ............ Passed 0.13 sec test 61 Start 61: test_python_layout_example1_L3 61: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/layout/example1-L3.py" 61: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 61: Environment variables: 61: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 61: Test timeout computed to be: 3000 61/68 Test #61: test_python_layout_example1_L3 ................ Passed 0.14 sec test 62 Start 62: test_python_layout_example1 62: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/layout/example1.py" 62: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 62: Environment variables: 62: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 62: Test timeout computed to be: 3000 62/68 Test #62: test_python_layout_example1 ................... Passed 0.14 sec test 63 Start 63: test_python_multi_multi_example1 63: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/multi/multi_example1.py" 63: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 63: Environment variables: 63: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 63: Test timeout computed to be: 3000 63/68 Test #63: test_python_multi_multi_example1 .............. Passed 0.13 sec test 64 Start 64: test_python_multi_multi_example2 64: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/multi/multi_example2.py" 64: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 64: Environment variables: 64: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 64: Test timeout computed to be: 3000 64/68 Test #64: test_python_multi_multi_example2 .............. Passed 0.13 sec test 65 Start 65: test_python_multi_multi_example3 65: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/multi/multi_example3.py" 65: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 65: Environment variables: 65: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 65: Test timeout computed to be: 3000 65/68 Test #65: test_python_multi_multi_example3 .............. Passed 0.13 sec test 66 Start 66: test_python_multi_printMulti 66: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/multi/printMulti.py" 66: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 66: Environment variables: 66: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 66: Test timeout computed to be: 3000 66: usage: printMulti sbml-file 66/68 Test #66: test_python_multi_printMulti .................. Passed 0.14 sec test 67 Start 67: test_python_qual_qual_example1 67: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.2/examples/python/qual/qual_example1.py" 67: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python 67: Environment variables: 67: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/python: 67: Test timeout computed to be: 3000 67/68 Test #67: test_python_qual_qual_example1 ................ Passed 0.14 sec test 68 Start 68: test_r_binding 68: Test command: /usr/bin/R "--slave" "-e" ".libPaths('temp');library(libSBML);cat(getLibSBMLDottedVersion() == '5.20.2')" 68: Working Directory: /builddir/build/BUILD/libsbml-5.20.2/build/src/bindings/r 68: Test timeout computed to be: 3000 68: 68: Attaching package: ‘libSBML’ 68: 68: The following object is masked from ‘package:base’: 68: 68: flush 68: 68: TRUE 68/68 Test #68: test_r_binding ................................ Passed 4.55 sec The following tests passed: test_comp_extensions_run test_comp_sbase_run test_comp_util_run test_comp_validator_run test_sbml_package_fbc_run test_fbc_validator_run test_extension_package_groups_run test_groups_validator_run test_l3v2extendedmath_validator_run test_extension_package_l3v2extendedmath_run test_sbml_package_layout_run test_layout_validator_run test_sbml_package_multi_run test_multi_validator_run test_extension_package_qual_run test_sbml_package_qual_run test_qual_validator_run test_sbml_package_render_run test_render_validator_run test_sbml_annotation_run test_sbml_conversion_run test_sbml_extension_run test_sbml_math_run test_sbml_sbml_run test_sbml_units_run test_sbml_util_run test_sbml_validator_run test_sbml_xml_run test_python_printversion test_python_addCVTerms test_python_addingEvidenceCodes_1 test_python_addingEvidenceCodes_2 test_python_addModelHistory test_python_append_to_note test_python_appendAnnotation test_python_convertSBML test_python_createExampleSBML test_python_createSimpleModel test_python_echoSBML test_python_evaluateCustomMath test_python_getAllElementsWithNotes test_python_inlineInitialAssignments test_python_printAnnotation test_python_printMath test_python_printRegisteredPackages test_python_printSBML test_python_printsupported test_python_printUnits test_python_promoteParameters test_python_readSBML test_python_replaceOneFD test_python_setIdFromNames test_python_setNamesFromIds test_python_unsetAnnotation test_python_unsetNotes test_python_validateSBML test_python_stringInput test_python_stripPackage test_python_fbc_fbc_example1 test_python_groups_groups_example1 test_python_layout_example1_L3 test_python_layout_example1 test_python_multi_multi_example1 test_python_multi_multi_example2 test_python_multi_multi_example3 test_python_multi_printMulti test_python_qual_qual_example1 test_r_binding 100% tests passed, 0 tests failed out of 68 Total Test time (real) = 21.36 sec ~/build/BUILD/libsbml-5.20.2 + popd + RPM_EC=0 ++ jobs -p + exit 0 Processing files: libsbml-5.20.2-8.fc41.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.pQ1Vxv + umask 022 + cd /builddir/build/BUILD + cd libsbml-5.20.2 + DOCDIR=/builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/doc/libsbml + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/doc/libsbml + cp -pr /builddir/build/BUILD/libsbml-5.20.2/README-code-from-svn.txt /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/doc/libsbml + cp -pr /builddir/build/BUILD/libsbml-5.20.2/README.md /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/doc/libsbml + cp -pr /builddir/build/BUILD/libsbml-5.20.2/NEWS.txt /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/doc/libsbml + cp -pr /builddir/build/BUILD/libsbml-5.20.2/FUNDING.txt /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/doc/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.RThwEB + umask 022 + cd /builddir/build/BUILD + cd libsbml-5.20.2 + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libsbml-5.20.2/COPYING.txt /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libsbml-5.20.2/LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsbml = 5.20.2-8.fc41 libsbml(x86-64) = 5.20.2-8.fc41 libsbml.so.5()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libminizip.so.1()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Obsoletes: java-libsbml < 0:5.19.0-18 libsbml-doc < 0:5.18.0-21 libsbml-sharp < 0:5.18.0-20 python2-libsbml < 0:5.18 Processing files: libsbml-devel-5.20.2-8.fc41.x86_64 Provides: libsbml-devel = 5.20.2-8.fc41 libsbml-devel(x86-64) = 5.20.2-8.fc41 libsbml-static = 5.20.2-8.fc41 pkgconfig(libsbml) = 5.20.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config libsbml.so.5()(64bit) pkgconfig(libxml-2.0) >= 2.6.22 Processing files: python3-libsbml-5.20.2-8.fc41.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.q5NYmI + umask 022 + cd /builddir/build/BUILD + cd libsbml-5.20.2 + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libsbml-5.20.2/COPYING.txt /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libsbml-5.20.2/LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-libsbml = 5.20.2-8.fc41 python3-libsbml = 5.20.2-8.fc41 python3-libsbml(x86-64) = 5.20.2-8.fc41 python3.12-libsbml = 5.20.2-8.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libminizip.so.1()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) python(abi) = 3.12 rtld(GNU_HASH) Obsoletes: python-libsbml < 5.20.2-8.fc41 Processing files: perl-LibSBML-5.20.2-8.fc41.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.crvgcQ + umask 022 + cd /builddir/build/BUILD + cd libsbml-5.20.2 + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libsbml-5.20.2/COPYING.txt /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libsbml-5.20.2/LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Provides: perl(LibSBML) perl(LibSBML::ASTBasePlugin) perl(LibSBML::ASTNode) perl(LibSBML::ASTNodeList) perl(LibSBML::ASTNodeValues_t) perl(LibSBML::AlgebraicRule) perl(LibSBML::AssignmentRule) perl(LibSBML::Association) perl(LibSBML::BindingSiteSpeciesType) perl(LibSBML::BoundingBox) perl(LibSBML::CVTerm) perl(LibSBML::CVTermList) perl(LibSBML::Callback) perl(LibSBML::CallbackRegistry) perl(LibSBML::CobraToFbcConverter) perl(LibSBML::ColorDefinition) perl(LibSBML::CompBase) perl(LibSBML::CompExtension) perl(LibSBML::CompFlatteningConverter) perl(LibSBML::CompModelPlugin) perl(LibSBML::CompPkgNamespaces) perl(LibSBML::CompSBMLDocumentPlugin) perl(LibSBML::CompSBasePlugin) perl(LibSBML::Compartment) perl(LibSBML::CompartmentGlyph) perl(LibSBML::CompartmentReference) perl(LibSBML::CompartmentType) perl(LibSBML::Constraint) perl(LibSBML::ConversionOption) perl(LibSBML::ConversionProperties) perl(LibSBML::CubicBezier) perl(LibSBML::Curve) perl(LibSBML::Date) perl(LibSBML::DateList) perl(LibSBML::DefaultTerm) perl(LibSBML::DefaultValues) perl(LibSBML::DefinitionURLRegistry) perl(LibSBML::Delay) perl(LibSBML::Deletion) perl(LibSBML::Dimensions) perl(LibSBML::ElementFilter) perl(LibSBML::Ellipse) perl(LibSBML::Event) perl(LibSBML::EventAssignment) perl(LibSBML::ExternalModelDefinition) perl(LibSBML::FbcAnd) perl(LibSBML::FbcAssociation) perl(LibSBML::FbcExtension) perl(LibSBML::FbcModelPlugin) perl(LibSBML::FbcOr) perl(LibSBML::FbcPkgNamespaces) perl(LibSBML::FbcReactionPlugin) perl(LibSBML::FbcSBMLDocumentPlugin) perl(LibSBML::FbcSBasePlugin) perl(LibSBML::FbcSpeciesPlugin) perl(LibSBML::FbcToCobraConverter) perl(LibSBML::FbcV1ToV2Converter) perl(LibSBML::FbcV2ToV1Converter) perl(LibSBML::FluxBound) perl(LibSBML::FluxObjective) perl(LibSBML::FunctionDefinition) perl(LibSBML::FunctionTerm) perl(LibSBML::GeneAssociation) perl(LibSBML::GeneProduct) perl(LibSBML::GeneProductAssociation) perl(LibSBML::GeneProductRef) perl(LibSBML::GeneralGlyph) perl(LibSBML::GlobalRenderInformation) perl(LibSBML::GlobalStyle) perl(LibSBML::GradientBase) perl(LibSBML::GradientStop) perl(LibSBML::GraphicalObject) perl(LibSBML::GraphicalPrimitive1D) perl(LibSBML::GraphicalPrimitive2D) perl(LibSBML::Group) perl(LibSBML::GroupsExtension) perl(LibSBML::GroupsModelPlugin) perl(LibSBML::GroupsPkgNamespaces) perl(LibSBML::ISBMLExtensionNamespaces) perl(LibSBML::IdList) perl(LibSBML::IdentifierTransformer) perl(LibSBML::Image) perl(LibSBML::InSpeciesTypeBond) perl(LibSBML::InitialAssignment) perl(LibSBML::Input) perl(LibSBML::IntraSpeciesReaction) perl(LibSBML::KeyValuePair) perl(LibSBML::KineticLaw) perl(LibSBML::L3ParserSettings) perl(LibSBML::L3v2extendedmathASTPlugin) perl(LibSBML::L3v2extendedmathExtension) perl(LibSBML::L3v2extendedmathPkgNamespaces) perl(LibSBML::L3v2extendedmathSBMLDocumentPlugin) perl(LibSBML::Layout) perl(LibSBML::LayoutExtension) perl(LibSBML::LayoutModelPlugin) perl(LibSBML::LayoutPkgNamespaces) perl(LibSBML::LayoutSpeciesReferencePlugin) perl(LibSBML::LineEnding) perl(LibSBML::LineSegment) perl(LibSBML::LinearGradient) perl(LibSBML::ListOf) perl(LibSBML::ListOfColorDefinitions) perl(LibSBML::ListOfCompartmentGlyphs) perl(LibSBML::ListOfCompartmentReferences) perl(LibSBML::ListOfCompartmentTypes) perl(LibSBML::ListOfCompartments) perl(LibSBML::ListOfConstraints) perl(LibSBML::ListOfCurveElements) perl(LibSBML::ListOfDeletions) perl(LibSBML::ListOfDrawables) perl(LibSBML::ListOfEventAssignments) perl(LibSBML::ListOfEvents) perl(LibSBML::ListOfExternalModelDefinitions) perl(LibSBML::ListOfFbcAssociations) perl(LibSBML::ListOfFluxBounds) perl(LibSBML::ListOfFluxObjectives) perl(LibSBML::ListOfFunctionDefinitions) perl(LibSBML::ListOfFunctionTerms) perl(LibSBML::ListOfGeneAssociations) perl(LibSBML::ListOfGeneProducts) perl(LibSBML::ListOfGlobalRenderInformation) perl(LibSBML::ListOfGlobalStyles) perl(LibSBML::ListOfGradientDefinitions) perl(LibSBML::ListOfGradientStops) perl(LibSBML::ListOfGraphicalObjects) perl(LibSBML::ListOfGroups) perl(LibSBML::ListOfInSpeciesTypeBonds) perl(LibSBML::ListOfInitialAssignments) perl(LibSBML::ListOfInputs) perl(LibSBML::ListOfKeyValuePairs) perl(LibSBML::ListOfLayouts) perl(LibSBML::ListOfLineEndings) perl(LibSBML::ListOfLineSegments) perl(LibSBML::ListOfLocalParameters) perl(LibSBML::ListOfLocalRenderInformation) perl(LibSBML::ListOfLocalStyles) perl(LibSBML::ListOfMembers) perl(LibSBML::ListOfModelDefinitions) perl(LibSBML::ListOfMultiSpeciesTypes) perl(LibSBML::ListOfObjectives) perl(LibSBML::ListOfOutputs) perl(LibSBML::ListOfOutwardBindingSites) perl(LibSBML::ListOfParameters) perl(LibSBML::ListOfPorts) perl(LibSBML::ListOfPossibleSpeciesFeatureValues) perl(LibSBML::ListOfQualitativeSpecies) perl(LibSBML::ListOfReactionGlyphs) perl(LibSBML::ListOfReactions) perl(LibSBML::ListOfReferenceGlyphs) perl(LibSBML::ListOfReplacedElements) perl(LibSBML::ListOfRules) perl(LibSBML::ListOfSpecies) perl(LibSBML::ListOfSpeciesFeatureTypes) perl(LibSBML::ListOfSpeciesFeatureValues) perl(LibSBML::ListOfSpeciesFeatures) perl(LibSBML::ListOfSpeciesGlyphs) perl(LibSBML::ListOfSpeciesReferenceGlyphs) perl(LibSBML::ListOfSpeciesReferences) perl(LibSBML::ListOfSpeciesTypeComponentIndexes) perl(LibSBML::ListOfSpeciesTypeComponentMapInProducts) perl(LibSBML::ListOfSpeciesTypeInstances) perl(LibSBML::ListOfSpeciesTypes) perl(LibSBML::ListOfSubmodels) perl(LibSBML::ListOfTextGlyphs) perl(LibSBML::ListOfTransitions) perl(LibSBML::ListOfUnitDefinitions) perl(LibSBML::ListOfUnits) perl(LibSBML::ListOfUserDefinedConstraintComponents) perl(LibSBML::ListOfUserDefinedConstraints) perl(LibSBML::LocalParameter) perl(LibSBML::LocalRenderInformation) perl(LibSBML::LocalStyle) perl(LibSBML::MathFilter) perl(LibSBML::Member) perl(LibSBML::Model) perl(LibSBML::ModelCreator) perl(LibSBML::ModelCreatorList) perl(LibSBML::ModelDefinition) perl(LibSBML::ModelHistory) perl(LibSBML::ModifierSpeciesReference) perl(LibSBML::MultiASTPlugin) perl(LibSBML::MultiCompartmentPlugin) perl(LibSBML::MultiExtension) perl(LibSBML::MultiListOfReactionsPlugin) perl(LibSBML::MultiModelPlugin) perl(LibSBML::MultiPkgNamespaces) perl(LibSBML::MultiSBMLDocumentPlugin) perl(LibSBML::MultiSimpleSpeciesReferencePlugin) perl(LibSBML::MultiSpeciesPlugin) perl(LibSBML::MultiSpeciesReferencePlugin) perl(LibSBML::MultiSpeciesType) perl(LibSBML::OFStream) perl(LibSBML::OStream) perl(LibSBML::OStringStream) perl(LibSBML::Objective) perl(LibSBML::Output) perl(LibSBML::OutwardBindingSite) perl(LibSBML::Parameter) perl(LibSBML::Point) perl(LibSBML::Polygon) perl(LibSBML::Port) perl(LibSBML::PossibleSpeciesFeatureValue) perl(LibSBML::Priority) perl(LibSBML::QualExtension) perl(LibSBML::QualModelPlugin) perl(LibSBML::QualPkgNamespaces) perl(LibSBML::QualitativeSpecies) perl(LibSBML::RDFAnnotationParser) perl(LibSBML::RadialGradient) perl(LibSBML::RateRule) perl(LibSBML::Reaction) perl(LibSBML::ReactionGlyph) perl(LibSBML::Rectangle) perl(LibSBML::ReferenceGlyph) perl(LibSBML::RelAbsVector) perl(LibSBML::RenderCubicBezier) perl(LibSBML::RenderCurve) perl(LibSBML::RenderExtension) perl(LibSBML::RenderGraphicalObjectPlugin) perl(LibSBML::RenderGroup) perl(LibSBML::RenderInformationBase) perl(LibSBML::RenderLayoutPlugin) perl(LibSBML::RenderListOfLayoutsPlugin) perl(LibSBML::RenderPkgNamespaces) perl(LibSBML::RenderPoint) perl(LibSBML::ReplacedBy) perl(LibSBML::ReplacedElement) perl(LibSBML::Replacing) perl(LibSBML::Rule) perl(LibSBML::SBMLConstructorException) perl(LibSBML::SBMLConverter) perl(LibSBML::SBMLConverterRegistry) perl(LibSBML::SBMLDocument) perl(LibSBML::SBMLDocumentPlugin) perl(LibSBML::SBMLError) perl(LibSBML::SBMLErrorLog) perl(LibSBML::SBMLExtension) perl(LibSBML::SBMLExtensionException) perl(LibSBML::SBMLExtensionRegistry) perl(LibSBML::SBMLExternalValidator) perl(LibSBML::SBMLFileResolver) perl(LibSBML::SBMLFunctionDefinitionConverter) perl(LibSBML::SBMLIdConverter) perl(LibSBML::SBMLInferUnitsConverter) perl(LibSBML::SBMLInitialAssignmentConverter) perl(LibSBML::SBMLLevel1Version1Converter) perl(LibSBML::SBMLLevelVersionConverter) perl(LibSBML::SBMLLocalParameterConverter) perl(LibSBML::SBMLNamespaces) perl(LibSBML::SBMLNamespacesList) perl(LibSBML::SBMLReactionConverter) perl(LibSBML::SBMLReader) perl(LibSBML::SBMLResolver) perl(LibSBML::SBMLResolverRegistry) perl(LibSBML::SBMLRuleConverter) perl(LibSBML::SBMLStripPackageConverter) perl(LibSBML::SBMLTransforms) perl(LibSBML::SBMLUnitsConverter) perl(LibSBML::SBMLUri) perl(LibSBML::SBMLValidator) perl(LibSBML::SBMLWriter) perl(LibSBML::SBO) perl(LibSBML::SBase) perl(LibSBML::SBaseExtensionPoint) perl(LibSBML::SBaseList) perl(LibSBML::SBasePlugin) perl(LibSBML::SBaseRef) perl(LibSBML::SimpleSpeciesReference) perl(LibSBML::Species) perl(LibSBML::SpeciesFeature) perl(LibSBML::SpeciesFeatureType) perl(LibSBML::SpeciesFeatureValue) perl(LibSBML::SpeciesGlyph) perl(LibSBML::SpeciesReference) perl(LibSBML::SpeciesReferenceGlyph) perl(LibSBML::SpeciesType) perl(LibSBML::SpeciesTypeComponentIndex) perl(LibSBML::SpeciesTypeComponentMapInProduct) perl(LibSBML::SpeciesTypeInstance) perl(LibSBML::StoichiometryMath) perl(LibSBML::StringSet) perl(LibSBML::Style) perl(LibSBML::SubListOfSpeciesFeatures) perl(LibSBML::Submodel) perl(LibSBML::SyntaxChecker) perl(LibSBML::Text) perl(LibSBML::TextGlyph) perl(LibSBML::Transformation) perl(LibSBML::Transformation2D) perl(LibSBML::Transition) perl(LibSBML::Trigger) perl(LibSBML::Unit) perl(LibSBML::UnitDefinition) perl(LibSBML::UserDefinedConstraint) perl(LibSBML::UserDefinedConstraintComponent) perl(LibSBML::XMLAttributes) perl(LibSBML::XMLConstructorException) perl(LibSBML::XMLError) perl(LibSBML::XMLErrorLog) perl(LibSBML::XMLInputStream) perl(LibSBML::XMLNamespaces) perl(LibSBML::XMLNode) perl(LibSBML::XMLOutputStream) perl(LibSBML::XMLOwningOutputFileStream) perl(LibSBML::XMLOwningOutputStringStream) perl(LibSBML::XMLToken) perl(LibSBML::XMLTriple) perl(LibSBML::double_array) perl(LibSBML::int_array) perl(LibSBMLc) perl-LibSBML = 5.20.2-8.fc41 perl-LibSBML(x86-64) = 5.20.2-8.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libminizip.so.1()(64bit) libperl.so.5.38()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) perl(:MODULE_COMPAT_5.38.2) perl(DynaLoader) perl(Exporter) perl(base) perl(overload) perl(vars) perl-libs rtld(GNU_HASH) Processing files: ruby-SBML-5.20.2-8.fc41.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.sWv1bc + umask 022 + cd /builddir/build/BUILD + cd libsbml-5.20.2 + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libsbml-5.20.2/COPYING.txt /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libsbml-5.20.2/LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Provides: libSBML.so()(64bit) ruby(SBML) = 5.20.2 ruby-SBML = 5.20.2-8.fc41 ruby-SBML(x86-64) = 5.20.2-8.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libminizip.so.1()(64bit) libruby.so.3.3()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: R-libSBML-5.20.2-8.fc41.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.UXm9xc + umask 022 + cd /builddir/build/BUILD + cd libsbml-5.20.2 + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libsbml-5.20.2/COPYING.txt /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libsbml-5.20.2/LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64/usr/share/licenses/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Provides: R(libSBML) = 5.20.2 R-libSBML = 5.20.2-8.fc41 R-libSBML(x86-64) = 5.20.2-8.fc41 libSBML.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(ABI) = 4.3 R(methods) R-core >= 1.8.0 libR.so()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libminizip.so.1()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: libsbml-debugsource-5.20.2-8.fc41.x86_64 Provides: libsbml-debugsource = 5.20.2-8.fc41 libsbml-debugsource(x86-64) = 5.20.2-8.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: libsbml-debuginfo-5.20.2-8.fc41.x86_64 Provides: debuginfo(build-id) = 24a1cf34663d73f863576f753686053d4c9b4200 libsbml-debuginfo = 5.20.2-8.fc41 libsbml-debuginfo(x86-64) = 5.20.2-8.fc41 libsbml.so.5.20.2-5.20.2-8.fc41.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.20.2-8.fc41 Processing files: python3-libsbml-debuginfo-5.20.2-8.fc41.x86_64 Provides: debuginfo(build-id) = 1a768ada906435d2723f35da0e95909459a0fc7d python-libsbml-debuginfo = 5.20.2-8.fc41 python3-libsbml-debuginfo = 5.20.2-8.fc41 python3-libsbml-debuginfo(x86-64) = 5.20.2-8.fc41 python3.12-libsbml-debuginfo = 5.20.2-8.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.20.2-8.fc41 Processing files: perl-LibSBML-debuginfo-5.20.2-8.fc41.x86_64 Provides: debuginfo(build-id) = 312cc4844cc179b1494e31b8bc29e9d30641d3a3 perl-LibSBML-debuginfo = 5.20.2-8.fc41 perl-LibSBML-debuginfo(x86-64) = 5.20.2-8.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.20.2-8.fc41 Processing files: ruby-SBML-debuginfo-5.20.2-8.fc41.x86_64 Provides: debuginfo(build-id) = 4e433f0ffa84e0656a75012b57105438ae2f2c65 libSBML.so-5.20.2-8.fc41.x86_64.debug()(64bit) ruby-SBML-debuginfo = 5.20.2-8.fc41 ruby-SBML-debuginfo(x86-64) = 5.20.2-8.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.20.2-8.fc41 Processing files: R-libSBML-debuginfo-5.20.2-8.fc41.x86_64 Provides: R-libSBML-debuginfo = 5.20.2-8.fc41 R-libSBML-debuginfo(x86-64) = 5.20.2-8.fc41 debuginfo(build-id) = 0a95776949f427a3434f36a63af86571ca529917 libSBML.so-5.20.2-8.fc41.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.20.2-8.fc41 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64 Wrote: /builddir/build/RPMS/ruby-SBML-debuginfo-5.20.2-8.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/perl-LibSBML-debuginfo-5.20.2-8.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/R-libSBML-debuginfo-5.20.2-8.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/python3-libsbml-debuginfo-5.20.2-8.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/libsbml-debugsource-5.20.2-8.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/libsbml-debuginfo-5.20.2-8.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/python3-libsbml-5.20.2-8.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/libsbml-devel-5.20.2-8.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/perl-LibSBML-5.20.2-8.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/R-libSBML-5.20.2-8.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/libsbml-5.20.2-8.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/ruby-SBML-5.20.2-8.fc41.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.iegxoo + umask 022 + cd /builddir/build/BUILD + cd libsbml-5.20.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/libsbml-5.20.2-8.fc41.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.6879jh + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/libsbml-5.20.2-SPECPARTS + rm -rf libsbml-5.20.2 libsbml-5.20.2.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild libsbml-5.20.2-8.fc41.src.rpm Finish: build phase for libsbml-5.20.2-8.fc41.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1713306730.316281/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/libsbml-5.20.2-8.fc41.src.rpm) Config(child) 76 minutes 11 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "perl-LibSBML-debuginfo", "epoch": null, "version": "5.20.2", "release": "8.fc41", "arch": "x86_64" }, { "name": "ruby-SBML-debuginfo", "epoch": null, "version": "5.20.2", "release": "8.fc41", "arch": "x86_64" }, { "name": "python3-libsbml-debuginfo", "epoch": null, "version": "5.20.2", "release": "8.fc41", "arch": "x86_64" }, { "name": "ruby-SBML", "epoch": null, "version": "5.20.2", "release": "8.fc41", "arch": "x86_64" }, { "name": "R-libSBML", "epoch": null, "version": "5.20.2", "release": "8.fc41", "arch": "x86_64" }, { "name": "perl-LibSBML", "epoch": null, "version": "5.20.2", "release": "8.fc41", "arch": "x86_64" }, { "name": "libsbml-debuginfo", "epoch": null, "version": "5.20.2", "release": "8.fc41", "arch": "x86_64" }, { "name": "libsbml-devel", "epoch": null, "version": "5.20.2", "release": "8.fc41", "arch": "x86_64" }, { "name": "libsbml-debugsource", "epoch": null, "version": "5.20.2", "release": "8.fc41", "arch": "x86_64" }, { "name": "libsbml", "epoch": null, "version": "5.20.2", "release": "8.fc41", "arch": "src" }, { "name": "libsbml", "epoch": null, "version": "5.20.2", "release": "8.fc41", "arch": "x86_64" }, { "name": "R-libSBML-debuginfo", "epoch": null, "version": "5.20.2", "release": "8.fc41", "arch": "x86_64" }, { "name": "python3-libsbml", "epoch": null, "version": "5.20.2", "release": "8.fc41", "arch": "x86_64" } ] } RPMResults finished