Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c119' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6352773-fedora-39-i386 --chroot fedora-39-i386 Version: 0.69 PID: 5546 Logging PID: 5547 Task: {'appstream': False, 'background': True, 'build_id': 6352773, 'buildroot_pkgs': [], 'chroot': 'fedora-39-i386', 'enable_net': False, 'fedora_review': False, 'git_hash': '7797852b73bb2c3b9326ac7287a8981ec93346ee', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/pybind11-2.10.4/libsonata', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'libsonata', 'package_version': '0.1.23-1', 'project_dirname': 'pybind11-2.10.4', 'project_name': 'pybind11-2.10.4', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/pybind11-2.10.4/fedora-39-i386/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/pybind11-2.10.4--https://src.fedoraproject.org/user/ankursinha', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/ankursinha', 'tags': [], 'task_id': '6352773-fedora-39-i386', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/pybind11-2.10.4/libsonata /var/lib/copr-rpmbuild/workspace/workdir-j6tp_g_e/libsonata --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/pybind11-2.10.4/libsonata', '/var/lib/copr-rpmbuild/workspace/workdir-j6tp_g_e/libsonata', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-j6tp_g_e/libsonata'... Running: git checkout 7797852b73bb2c3b9326ac7287a8981ec93346ee -- cmd: ['git', 'checkout', '7797852b73bb2c3b9326ac7287a8981ec93346ee', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-j6tp_g_e/libsonata rc: 0 stdout: stderr: Note: switching to '7797852b73bb2c3b9326ac7287a8981ec93346ee'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 7797852 automatic import of libsonata Running: copr-distgit-client sources INFO: Calling: curl -H Pragma: -o libsonata-0.1.23.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/pybind11-2.10.4/libsonata/libsonata-0.1.23.tar.gz/md5/4a2f0917fd2882f707e2b2e92e40f85b/libsonata-0.1.23.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 624k 100 624k 0 0 1438k 0 --:--:-- --:--:-- --:--:-- 1436k INFO: Reading stdout from command: md5sum libsonata-0.1.23.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-j6tp_g_e/libsonata/libsonata.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-j6tp_g_e/libsonata --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1693311891.404284 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.0 starting (python version = 3.11.3, NVR = mock-5.0-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-j6tp_g_e/libsonata/libsonata.spec) Config(fedora-39-i686) Start: clean chroot Finish: clean chroot Mock Version: 5.0 INFO: Mock Version: 5.0 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-i686-bootstrap-1693311891.404284/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Using bootstrap image: registry.fedoraproject.org/fedora:39 INFO: Pulling image: registry.fedoraproject.org/fedora:39 INFO: Copy content of container registry.fedoraproject.org/fedora:39 to /var/lib/mock/fedora-39-i686-bootstrap-1693311891.404284/root INFO: mounting registry.fedoraproject.org/fedora:39 with podman image mount INFO: image registry.fedoraproject.org/fedora:39 as /var/lib/containers/storage/overlay/a1ea6666f890f6a26692bd978201da7db36202506fe403a2b48b423746173906/merged INFO: umounting image registry.fedoraproject.org/fedora:39 (/var/lib/containers/storage/overlay/a1ea6666f890f6a26692bd978201da7db36202506fe403a2b48b423746173906/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 831 kB/s | 101 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 53 MB/s | 70 MB 00:01 local 9.4 MB/s | 70 MB 00:07 Package python3-dnf-4.16.2-2.fc39.noarch is already installed. Dependencies resolved. ======================================================================================================================== Package Arch Version Repository Size ======================================================================================================================== Installing: python3-dnf-plugins-core noarch 4.4.2-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 278 k Upgrading: dnf noarch 4.16.2-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 465 k dnf-data noarch 4.16.2-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k python3-dnf noarch 4.16.2-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 546 k yum noarch 4.16.2-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36 k Installing dependencies: dbus-libs x86_64 1:1.14.8-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 156 k python3-dateutil noarch 1:2.8.2-10.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 344 k python3-dbus x86_64 1.3.2-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146 k python3-distro noarch 1.8.0-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 44 k python3-six noarch 1.16.0-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k python3-systemd x86_64 235-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101 k Transaction Summary ======================================================================================================================== Install 7 Packages Upgrade 4 Packages Total download size: 2.1 M Downloading Packages: (1/11): python3-dbus-1.3.2-4.fc39.x86_64.rpm 406 kB/s | 146 kB 00:00 (2/11): dbus-libs-1.14.8-2.fc39.x86_64.rpm 395 kB/s | 156 kB 00:00 (3/11): python3-distro-1.8.0-6.fc39.noarch.rpm 431 kB/s | 44 kB 00:00 (4/11): python3-dateutil-2.8.2-10.fc39.noarch.r 713 kB/s | 344 kB 00:00 (5/11): python3-six-1.16.0-12.fc39.noarch.rpm 380 kB/s | 41 kB 00:00 (6/11): python3-dnf-plugins-core-4.4.2-1.fc39.n 1.1 MB/s | 278 kB 00:00 (7/11): python3-systemd-235-5.fc39.x86_64.rpm 539 kB/s | 101 kB 00:00 (8/11): dnf-data-4.16.2-4.fc40.noarch.rpm 498 kB/s | 39 kB 00:00 (9/11): yum-4.16.2-4.fc40.noarch.rpm 388 kB/s | 36 kB 00:00 (10/11): dnf-4.16.2-4.fc40.noarch.rpm 1.1 MB/s | 465 kB 00:00 (11/11): python3-dnf-4.16.2-4.fc40.noarch.rpm 1.3 MB/s | 546 kB 00:00 -------------------------------------------------------------------------------- Total 2.0 MB/s | 2.1 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Upgrading : dnf-data-4.16.2-4.fc40.noarch 1/15 Upgrading : python3-dnf-4.16.2-4.fc40.noarch 2/15 Installing : python3-systemd-235-5.fc39.x86_64 3/15 Installing : python3-six-1.16.0-12.fc39.noarch 4/15 Installing : python3-dateutil-1:2.8.2-10.fc39.noarch 5/15 Installing : python3-distro-1.8.0-6.fc39.noarch 6/15 Installing : dbus-libs-1:1.14.8-2.fc39.x86_64 7/15 Installing : python3-dbus-1.3.2-4.fc39.x86_64 8/15 Upgrading : dnf-4.16.2-4.fc40.noarch 9/15 Running scriptlet: dnf-4.16.2-4.fc40.noarch 9/15 Upgrading : yum-4.16.2-4.fc40.noarch 10/15 Installing : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 11/15 Cleanup : yum-4.16.2-2.fc39.noarch 12/15 Running scriptlet: dnf-4.16.2-2.fc39.noarch 13/15 Cleanup : dnf-4.16.2-2.fc39.noarch 13/15 Running scriptlet: dnf-4.16.2-2.fc39.noarch 13/15 Cleanup : python3-dnf-4.16.2-2.fc39.noarch 14/15 Cleanup : dnf-data-4.16.2-2.fc39.noarch 15/15 Running scriptlet: dnf-data-4.16.2-2.fc39.noarch 15/15 Verifying : dbus-libs-1:1.14.8-2.fc39.x86_64 1/15 Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 2/15 Verifying : python3-dbus-1.3.2-4.fc39.x86_64 3/15 Verifying : python3-distro-1.8.0-6.fc39.noarch 4/15 Verifying : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 5/15 Verifying : python3-six-1.16.0-12.fc39.noarch 6/15 Verifying : python3-systemd-235-5.fc39.x86_64 7/15 Verifying : dnf-4.16.2-4.fc40.noarch 8/15 Verifying : dnf-4.16.2-2.fc39.noarch 9/15 Verifying : dnf-data-4.16.2-4.fc40.noarch 10/15 Verifying : dnf-data-4.16.2-2.fc39.noarch 11/15 Verifying : python3-dnf-4.16.2-4.fc40.noarch 12/15 Verifying : python3-dnf-4.16.2-2.fc39.noarch 13/15 Verifying : yum-4.16.2-4.fc40.noarch 14/15 Verifying : yum-4.16.2-2.fc39.noarch 15/15 Upgraded: dnf-4.16.2-4.fc40.noarch dnf-data-4.16.2-4.fc40.noarch python3-dnf-4.16.2-4.fc40.noarch yum-4.16.2-4.fc40.noarch Installed: dbus-libs-1:1.14.8-2.fc39.x86_64 python3-dateutil-1:2.8.2-10.fc39.noarch python3-dbus-1.3.2-4.fc39.x86_64 python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-i686-1693311891.404284/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 1.2 MB/s | 101 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 11 MB/s | 59 MB 00:05 local 45 MB/s | 59 MB 00:01 Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing group/module packages: bash i686 5.2.15-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M bzip2 i686 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 53 k coreutils i686 9.3-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M cpio i686 2.14-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 278 k diffutils i686 3.10-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 394 k fedora-release noarch 40-0.6 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.9 k findutils i686 1:4.9.0-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 492 k gawk i686 5.2.2-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 M glibc-minimal-langpack i686 2.38-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67 k grep i686 3.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 294 k gzip i686 1.12-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 158 k info i686 7.0.3-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183 k patch i686 2.7.6-22.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 138 k redhat-rpm-config noarch 265-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 77 k rpm-build i686 4.18.92-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 71 k sed i686 4.8-14.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 300 k shadow-utils i686 2:4.14.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M tar i686 2:1.35-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 864 k unzip i686 6.0-62.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 180 k util-linux i686 2.39.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M which i686 2.21-40.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 42 k xz i686 5.4.4-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 534 k Installing dependencies: alternatives i686 1.25-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k ansible-srpm-macros noarch 1-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k audit-libs i686 3.1.2-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 125 k authselect i686 1.4.2-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 140 k authselect-libs i686 1.4.2-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 238 k basesystem noarch 11-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 k binutils i686 2.41-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.8 M binutils-gold i686 2.41-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 863 k bzip2-libs i686 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k ca-certificates noarch 2023.2.60_v7.0.306-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 837 k coreutils-common i686 9.3-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M cracklib i686 2.9.11-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 83 k crypto-policies noarch 20230731-1.git5ed06e0.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 68 k curl i686 8.2.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 347 k cyrus-sasl-lib i686 2.1.28-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 857 k debugedit i686 5.0-10.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 79 k dwz i686 0.15-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 139 k ed i686 1.19-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78 k efi-srpm-macros noarch 5-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22 k elfutils i686 0.189-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 550 k elfutils-debuginfod-client i686 0.189-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k elfutils-default-yama-scope noarch 0.189-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13 k elfutils-libelf i686 0.189-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 201 k elfutils-libs i686 0.189-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 288 k fedora-gpg-keys noarch 40-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 119 k fedora-release-common noarch 40-0.6 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 18 k fedora-release-identity-basic noarch 40-0.6 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.7 k fedora-repos noarch 40-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.4 k fedora-repos-rawhide noarch 40-0.1 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 451 k Installing Groups: build Transaction Summary ======================================================================================================================================== Install 152 Packages Total download size: 53 M Installed size: 178 M Downloading Packages: (1/152): ansible-srpm-macros-1-11.fc39.noarch.r 170 kB/s | 21 kB 00:00 (2/152): alternatives-1.25-1.fc39.i686.rpm 310 kB/s | 39 kB 00:00 (3/152): audit-libs-3.1.2-2.fc40.i686.rpm 761 kB/s | 125 kB 00:00 (4/152): authselect-1.4.2-3.fc39.i686.rpm 2.3 MB/s | 140 kB 00:00 (5/152): basesystem-11-18.fc39.noarch.rpm 159 kB/s | 7.2 kB 00:00 (6/152): authselect-libs-1.4.2-3.fc39.i686.rpm 2.2 MB/s | 238 kB 00:00 (7/152): binutils-gold-2.41-5.fc40.i686.rpm 3.0 MB/s | 863 kB 00:00 (8/152): bash-5.2.15-5.fc39.i686.rpm 5.0 MB/s | 1.8 MB 00:00 (9/152): bzip2-1.0.8-16.fc39.i686.rpm 629 kB/s | 53 kB 00:00 (10/152): bzip2-libs-1.0.8-16.fc39.i686.rpm 466 kB/s | 41 kB 00:00 (11/152): ca-certificates-2023.2.60_v7.0.306-2. 6.6 MB/s | 837 kB 00:00 (12/152): coreutils-9.3-2.fc39.i686.rpm 6.8 MB/s | 1.2 MB 00:00 (13/152): binutils-2.41-5.fc40.i686.rpm 9.1 MB/s | 5.8 MB 00:00 (14/152): cpio-2.14-4.fc39.i686.rpm 3.4 MB/s | 278 kB 00:00 (15/152): cracklib-2.9.11-2.fc39.i686.rpm 1.5 MB/s | 83 kB 00:00 (16/152): coreutils-common-9.3-2.fc39.i686.rpm 11 MB/s | 2.1 MB 00:00 (17/152): crypto-policies-20230731-1.git5ed06e0 1.5 MB/s | 68 kB 00:00 (18/152): curl-8.2.1-2.fc40.i686.rpm 7.4 MB/s | 347 kB 00:00 (19/152): debugedit-5.0-10.fc39.i686.rpm 1.4 MB/s | 79 kB 00:00 (20/152): cyrus-sasl-lib-2.1.28-11.fc39.i686.rp 10 MB/s | 857 kB 00:00 (21/152): diffutils-3.10-3.fc39.i686.rpm 5.2 MB/s | 394 kB 00:00 (22/152): dwz-0.15-3.fc39.i686.rpm 2.8 MB/s | 139 kB 00:00 (23/152): ed-1.19-4.fc39.i686.rpm 1.8 MB/s | 78 kB 00:00 (24/152): efi-srpm-macros-5-9.fc39.noarch.rpm 570 kB/s | 22 kB 00:00 (25/152): elfutils-debuginfod-client-0.189-6.fc 1.0 MB/s | 39 kB 00:00 (26/152): 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kB 00:00 (41/152): fpc-srpm-macros-1.3-8.fc39.noarch.rpm 155 kB/s | 7.4 kB 00:00 (42/152): gawk-5.2.2-2.fc39.i686.rpm 10 MB/s | 1.0 MB 00:00 (43/152): gdbm-libs-1.23-4.fc39.i686.rpm 923 kB/s | 60 kB 00:00 (44/152): ghc-srpm-macros-1.6.1-2.fc39.noarch.r 132 kB/s | 7.8 kB 00:00 (45/152): glibc-common-2.38-1.fc39.i686.rpm 4.5 MB/s | 355 kB 00:00 (46/152): glibc-2.38-1.fc39.i686.rpm 11 MB/s | 1.9 MB 00:00 (47/152): glibc-minimal-langpack-2.38-1.fc39.i6 913 kB/s | 67 kB 00:00 (48/152): glibc-gconv-extra-2.38-1.fc39.i686.rp 11 MB/s | 1.6 MB 00:00 (49/152): gmp-6.2.1-5.fc39.i686.rpm 4.5 MB/s | 306 kB 00:00 (50/152): gdb-minimal-13.2-7.fc39.i686.rpm 11 MB/s | 4.5 MB 00:00 (51/152): gnat-srpm-macros-6-3.fc39.noarch.rpm 143 kB/s | 8.8 kB 00:00 (52/152): go-srpm-macros-3.2.0-6.fc39.noarch.rp 633 kB/s | 27 kB 00:00 (53/152): grep-3.11-5.fc40.i686.rpm 7.7 MB/s | 294 kB 00:00 (54/152): gzip-1.12-6.fc39.i686.rpm 5.4 MB/s | 158 kB 00:00 (55/152): info-7.0.3-3.fc39.i686.rpm 7.5 MB/s | 183 kB 00:00 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libsigsegv-2.14-5.fc39.i686.rpm 667 kB/s | 27 kB 00:00 (87/152): libsmartcols-2.39.2-1.fc40.i686.rpm 1.6 MB/s | 69 kB 00:00 (88/152): libssh-0.10.5-2.fc39.i686.rpm 5.3 MB/s | 226 kB 00:00 (89/152): libssh-config-0.10.5-2.fc39.noarch.rp 221 kB/s | 9.2 kB 00:00 (90/152): libtasn1-4.19.0-3.fc39.i686.rpm 2.1 MB/s | 75 kB 00:00 (91/152): libtirpc-1.3.3-1.rc2.fc39.i686.rpm 3.0 MB/s | 101 kB 00:00 (92/152): libstdc++-13.2.1-1.fc39.i686.rpm 16 MB/s | 926 kB 00:00 (93/152): libunistring-1.1-5.fc40.i686.rpm 15 MB/s | 551 kB 00:00 (94/152): libutempter-1.2.1-10.fc39.i686.rpm 888 kB/s | 27 kB 00:00 (95/152): libuuid-2.39.2-1.fc40.i686.rpm 1.1 MB/s | 29 kB 00:00 (96/152): libverto-0.3.2-6.fc39.i686.rpm 910 kB/s | 21 kB 00:00 (97/152): libxcrypt-4.4.36-2.fc39.i686.rpm 4.9 MB/s | 123 kB 00:00 (98/152): libxml2-2.11.5-1.fc40.i686.rpm 18 MB/s | 737 kB 00:00 (99/152): libzstd-1.5.5-4.fc39.i686.rpm 9.1 MB/s | 290 kB 00:00 (100/152): lua-libs-5.4.6-3.fc39.i686.rpm 4.6 MB/s | 149 kB 00:00 (101/152): lua-srpm-macros-1-9.fc39.noarch.rpm 331 kB/s | 8.6 kB 00:00 (102/152): lz4-libs-1.9.4-4.fc39.i686.rpm 2.8 MB/s | 70 kB 00:00 (103/152): mpfr-4.2.0-3.fc39.i686.rpm 14 MB/s | 380 kB 00:00 (104/152): ocaml-srpm-macros-8-2.fc39.noarch.rp 663 kB/s | 14 kB 00:00 (105/152): openblas-srpm-macros-2-14.fc39.noarc 363 kB/s | 7.5 kB 00:00 (106/152): openldap-2.6.6-1.fc39.i686.rpm 12 MB/s | 273 kB 00:00 (107/152): p11-kit-0.25.0-2.fc39.i686.rpm 16 MB/s | 470 kB 00:00 (108/152): p11-kit-trust-0.25.0-2.fc39.i686.rpm 5.0 MB/s | 139 kB 00:00 (109/152): package-notes-srpm-macros-0.5-9.fc39 550 kB/s | 11 kB 00:00 (110/152): openssl-libs-3.1.1-3.fc40.i686.rpm 38 MB/s | 2.1 MB 00:00 (111/152): pam-1.5.3-2.fc39.i686.rpm 20 MB/s | 527 kB 00:00 (112/152): pam-libs-1.5.3-2.fc39.i686.rpm 2.9 MB/s | 60 kB 00:00 (113/152): patch-2.7.6-22.fc39.i686.rpm 5.6 MB/s | 138 kB 00:00 (114/152): pcre2-10.42-1.fc39.2.i686.rpm 10 MB/s | 231 kB 00:00 (115/152): pcre2-syntax-10.42-1.fc39.2.noarch.r 6.6 MB/s | 143 kB 00:00 (116/152): perl-srpm-macros-1-51.fc39.noarch.rp 385 kB/s | 8.0 kB 00:00 (117/152): pkgconf-1.9.5-2.fc39.i686.rpm 2.0 MB/s | 43 kB 00:00 (118/152): pkgconf-m4-1.9.5-2.fc39.noarch.rpm 719 kB/s | 14 kB 00:00 (119/152): pkgconf-pkg-config-1.9.5-2.fc39.i686 494 kB/s | 9.6 kB 00:00 (120/152): popt-1.19-3.fc39.i686.rpm 2.9 MB/s | 62 kB 00:00 (121/152): publicsuffix-list-dafsa-20230812-1.f 2.8 MB/s | 57 kB 00:00 (122/152): pyproject-srpm-macros-1.9.0-2.fc39.n 700 kB/s | 14 kB 00:00 (123/152): python-srpm-macros-3.12-2.fc39.noarc 1.2 MB/s | 25 kB 00:00 (124/152): qt5-srpm-macros-5.15.10-2.fc39.noarc 426 kB/s | 8.3 kB 00:00 (125/152): qt6-srpm-macros-6.5.2-2.fc39.noarch. 446 kB/s | 9.2 kB 00:00 (126/152): redhat-rpm-config-265-1.fc40.noarch. 3.4 MB/s | 77 kB 00:00 (127/152): readline-8.2-4.fc39.i686.rpm 9.1 MB/s | 218 kB 00:00 (128/152): rpm-4.18.92-3.fc40.i686.rpm 19 MB/s | 506 kB 00:00 (129/152): rpm-build-4.18.92-3.fc40.i686.rpm 2.9 MB/s | 71 kB 00:00 (130/152): rpm-build-libs-4.18.92-3.fc40.i686.r 4.2 MB/s | 102 kB 00:00 (131/152): rpm-libs-4.18.92-3.fc40.i686.rpm 14 MB/s | 340 kB 00:00 (132/152): rust-srpm-macros-24-5.fc40.noarch.rp 537 kB/s | 12 kB 00:00 (133/152): sed-4.8-14.fc39.i686.rpm 12 MB/s | 300 kB 00:00 (134/152): rpm-sequoia-1.4.1-2.fc39.i686.rpm 25 MB/s | 945 kB 00:00 (135/152): setup-2.14.4-1.fc39.noarch.rpm 5.9 MB/s | 148 kB 00:00 (136/152): shadow-utils-4.14.0-1.fc40.i686.rpm 31 MB/s | 1.2 MB 00:00 (137/152): sqlite-libs-3.42.0-7.fc39.i686.rpm 16 MB/s | 718 kB 00:00 (138/152): systemd-libs-254.1-2.fc40.i686.rpm 19 MB/s | 728 kB 00:00 (139/152): tzdata-2023c-3.fc40.noarch.rpm 16 MB/s | 433 kB 00:00 (140/152): unzip-6.0-62.fc39.i686.rpm 7.1 MB/s | 180 kB 00:00 (141/152): tar-1.35-2.fc40.i686.rpm 23 MB/s | 864 kB 00:00 (142/152): which-2.21-40.fc39.i686.rpm 1.5 MB/s | 42 kB 00:00 (143/152): util-linux-core-2.39.2-1.fc40.i686.r 15 MB/s | 491 kB 00:00 (144/152): util-linux-2.39.2-1.fc40.i686.rpm 28 MB/s | 1.2 MB 00:00 (145/152): xxhash-libs-0.8.2-1.fc39.i686.rpm 2.3 MB/s | 49 kB 00:00 (146/152): xz-5.4.4-1.fc39.i686.rpm 21 MB/s | 534 kB 00:00 (147/152): xz-libs-5.4.4-1.fc39.i686.rpm 5.4 MB/s | 118 kB 00:00 (148/152): zip-3.0-38.fc39.i686.rpm 11 MB/s | 267 kB 00:00 (149/152): zlib-1.2.13-4.fc39.i686.rpm 4.4 MB/s | 93 kB 00:00 (150/152): zstd-1.5.5-4.fc39.i686.rpm 17 MB/s | 451 kB 00:00 (151/152): ncurses-base-6.4-7.20230520.fc39.noa 4.7 MB/s | 63 kB 00:00 (152/152): ncurses-libs-6.4-7.20230520.fc39.i68 23 MB/s | 357 kB 00:00 -------------------------------------------------------------------------------- Total 19 MB/s | 53 MB 00:02 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.i686 1/1 Preparing : 1/1 Installing : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 1/152 Running scriptlet: crypto-policies-20230731-1.git5ed06e0.fc39.noarc 1/152 Installing : tzdata-2023c-3.fc40.noarch 2/152 Installing : fedora-release-identity-basic-40-0.6.noarch 3/152 Installing : fedora-repos-rawhide-40-0.1.noarch 4/152 Installing : fedora-gpg-keys-40-0.1.noarch 5/152 Installing : fedora-repos-40-0.1.noarch 6/152 Installing : fedora-release-common-40-0.6.noarch 7/152 Installing : fedora-release-40-0.6.noarch 8/152 Installing : setup-2.14.4-1.fc39.noarch 9/152 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.4-1.fc39.noarch 9/152 Installing : filesystem-3.18-6.fc39.i686 10/152 Installing : basesystem-11-18.fc39.noarch 11/152 Installing : ncurses-base-6.4-7.20230520.fc39.noarch 12/152 Installing : rust-srpm-macros-24-5.fc40.noarch 13/152 Installing : qt6-srpm-macros-6.5.2-2.fc39.noarch 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libgcc-13.2.1-1.fc39.i686 31/152 Installing : glibc-gconv-extra-2.38-1.fc39.i686 32/152 Running scriptlet: glibc-gconv-extra-2.38-1.fc39.i686 32/152 Installing : glibc-minimal-langpack-2.38-1.fc39.i686 33/152 Installing : glibc-common-2.38-1.fc39.i686 34/152 Running scriptlet: glibc-2.38-1.fc39.i686 35/152 Installing : glibc-2.38-1.fc39.i686 35/152 Running scriptlet: glibc-2.38-1.fc39.i686 35/152 Installing : ncurses-libs-6.4-7.20230520.fc39.i686 36/152 Installing : bash-5.2.15-5.fc39.i686 37/152 Running scriptlet: bash-5.2.15-5.fc39.i686 37/152 Installing : zlib-1.2.13-4.fc39.i686 38/152 Installing : xz-libs-5.4.4-1.fc39.i686 39/152 Installing : bzip2-libs-1.0.8-16.fc39.i686 40/152 Installing : libstdc++-13.2.1-1.fc39.i686 41/152 Installing : libuuid-2.39.2-1.fc40.i686 42/152 Installing : libzstd-1.5.5-4.fc39.i686 43/152 Installing : elfutils-libelf-0.189-6.fc40.i686 44/152 Installing : popt-1.19-3.fc39.i686 45/152 Installing : libblkid-2.39.2-1.fc40.i686 46/152 Installing : 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pkgconf-pkg-config-1.9.5-2.fc39.i686 107/152 Installing : libsigsegv-2.14-5.fc39.i686 108/152 Installing : gawk-5.2.2-2.fc39.i686 109/152 Installing : libtasn1-4.19.0-3.fc39.i686 110/152 Installing : p11-kit-trust-0.25.0-2.fc39.i686 111/152 Running scriptlet: p11-kit-trust-0.25.0-2.fc39.i686 111/152 Installing : openssl-libs-1:3.1.1-3.fc40.i686 112/152 Installing : coreutils-9.3-2.fc39.i686 113/152 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 114/152 Installing : ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 114/152 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 114/152 Running scriptlet: authselect-libs-1.4.2-3.fc39.i686 115/152 Installing : authselect-libs-1.4.2-3.fc39.i686 115/152 Installing : gzip-1.12-6.fc39.i686 116/152 Installing : cracklib-2.9.11-2.fc39.i686 117/152 Installing : libpwquality-1.4.5-6.fc39.i686 118/152 Installing : authselect-1.4.2-3.fc39.i686 119/152 Installing : libarchive-3.7.1-1.fc39.i686 120/152 Installing : libevent-2.1.12-9.fc39.i686 121/152 Installing : openldap-2.6.6-1.fc39.i686 122/152 Installing : rpm-sequoia-1.4.1-2.fc39.i686 123/152 Installing : rpm-libs-4.18.92-3.fc40.i686 124/152 Installing : libverto-0.3.2-6.fc39.i686 125/152 Installing : krb5-libs-1.21.2-1.fc40.i686 126/152 Installing : libtirpc-1.3.3-1.rc2.fc39.i686 127/152 Installing : libnsl2-2.0.0-6.fc39.i686 128/152 Installing : pam-1.5.3-2.fc39.i686 129/152 Installing : libssh-0.10.5-2.fc39.i686 130/152 Installing : libcurl-8.2.1-2.fc40.i686 131/152 Installing : elfutils-libs-0.189-6.fc40.i686 132/152 Installing : elfutils-debuginfod-client-0.189-6.fc40.i686 133/152 Installing : binutils-gold-2.41-5.fc40.i686 134/152 Running scriptlet: binutils-gold-2.41-5.fc40.i686 134/152 Installing : binutils-2.41-5.fc40.i686 135/152 Running scriptlet: binutils-2.41-5.fc40.i686 135/152 Installing : elfutils-0.189-6.fc40.i686 136/152 Installing : rpm-build-libs-4.18.92-3.fc40.i686 137/152 Installing : curl-8.2.1-2.fc40.i686 138/152 Running scriptlet: rpm-4.18.92-3.fc40.i686 139/152 Installing : rpm-4.18.92-3.fc40.i686 139/152 Installing : efi-srpm-macros-5-9.fc39.noarch 140/152 Installing : lua-srpm-macros-1-9.fc39.noarch 141/152 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 142/152 Installing : go-srpm-macros-3.2.0-6.fc39.noarch 143/152 Installing : python-srpm-macros-3.12-2.fc39.noarch 144/152 Installing : redhat-rpm-config-265-1.fc40.noarch 145/152 Installing : xxhash-libs-0.8.2-1.fc39.i686 146/152 Installing : gdb-minimal-13.2-7.fc39.i686 147/152 Installing : debugedit-5.0-10.fc39.i686 148/152 Installing : rpm-build-4.18.92-3.fc40.i686 149/152 Installing : util-linux-2.39.2-1.fc40.i686 150/152 Installing : which-2.21-40.fc39.i686 151/152 Installing : info-7.0.3-3.fc39.i686 152/152 Running scriptlet: filesystem-3.18-6.fc39.i686 152/152 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 152/152 Running scriptlet: authselect-libs-1.4.2-3.fc39.i686 152/152 Running scriptlet: rpm-4.18.92-3.fc40.i686 152/152 Running scriptlet: info-7.0.3-3.fc39.i686 152/152 Verifying : alternatives-1.25-1.fc39.i686 1/152 Verifying : ansible-srpm-macros-1-11.fc39.noarch 2/152 Verifying : audit-libs-3.1.2-2.fc40.i686 3/152 Verifying : authselect-1.4.2-3.fc39.i686 4/152 Verifying : authselect-libs-1.4.2-3.fc39.i686 5/152 Verifying : basesystem-11-18.fc39.noarch 6/152 Verifying : bash-5.2.15-5.fc39.i686 7/152 Verifying : binutils-2.41-5.fc40.i686 8/152 Verifying : binutils-gold-2.41-5.fc40.i686 9/152 Verifying : bzip2-1.0.8-16.fc39.i686 10/152 Verifying : bzip2-libs-1.0.8-16.fc39.i686 11/152 Verifying : ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 12/152 Verifying : coreutils-9.3-2.fc39.i686 13/152 Verifying : coreutils-common-9.3-2.fc39.i686 14/152 Verifying : cpio-2.14-4.fc39.i686 15/152 Verifying : cracklib-2.9.11-2.fc39.i686 16/152 Verifying : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 17/152 Verifying : curl-8.2.1-2.fc40.i686 18/152 Verifying : cyrus-sasl-lib-2.1.28-11.fc39.i686 19/152 Verifying : debugedit-5.0-10.fc39.i686 20/152 Verifying : diffutils-3.10-3.fc39.i686 21/152 Verifying : dwz-0.15-3.fc39.i686 22/152 Verifying : ed-1.19-4.fc39.i686 23/152 Verifying : efi-srpm-macros-5-9.fc39.noarch 24/152 Verifying : elfutils-0.189-6.fc40.i686 25/152 Verifying : elfutils-debuginfod-client-0.189-6.fc40.i686 26/152 Verifying : elfutils-default-yama-scope-0.189-6.fc40.noarch 27/152 Verifying : elfutils-libelf-0.189-6.fc40.i686 28/152 Verifying : elfutils-libs-0.189-6.fc40.i686 29/152 Verifying : fedora-gpg-keys-40-0.1.noarch 30/152 Verifying : fedora-release-40-0.6.noarch 31/152 Verifying : fedora-release-common-40-0.6.noarch 32/152 Verifying : fedora-release-identity-basic-40-0.6.noarch 33/152 Verifying : fedora-repos-40-0.1.noarch 34/152 Verifying : fedora-repos-rawhide-40-0.1.noarch 35/152 Verifying : file-5.45-1.fc40.i686 36/152 Verifying : file-libs-5.45-1.fc40.i686 37/152 Verifying : filesystem-3.18-6.fc39.i686 38/152 Verifying : findutils-1:4.9.0-5.fc39.i686 39/152 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 40/152 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 41/152 Verifying : gawk-5.2.2-2.fc39.i686 42/152 Verifying : gdb-minimal-13.2-7.fc39.i686 43/152 Verifying : gdbm-libs-1:1.23-4.fc39.i686 44/152 Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 45/152 Verifying : glibc-2.38-1.fc39.i686 46/152 Verifying : glibc-common-2.38-1.fc39.i686 47/152 Verifying : glibc-gconv-extra-2.38-1.fc39.i686 48/152 Verifying : glibc-minimal-langpack-2.38-1.fc39.i686 49/152 Verifying : gmp-1:6.2.1-5.fc39.i686 50/152 Verifying : gnat-srpm-macros-6-3.fc39.noarch 51/152 Verifying : go-srpm-macros-3.2.0-6.fc39.noarch 52/152 Verifying : grep-3.11-5.fc40.i686 53/152 Verifying : gzip-1.12-6.fc39.i686 54/152 Verifying : info-7.0.3-3.fc39.i686 55/152 Verifying : jansson-2.13.1-7.fc39.i686 56/152 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 57/152 Verifying : keyutils-libs-1.6.1-7.fc39.i686 58/152 Verifying : krb5-libs-1.21.2-1.fc40.i686 59/152 Verifying : libacl-2.3.1-8.fc39.i686 60/152 Verifying : libarchive-3.7.1-1.fc39.i686 61/152 Verifying : libattr-2.5.1-8.fc39.i686 62/152 Verifying : libblkid-2.39.2-1.fc40.i686 63/152 Verifying : libbrotli-1.0.9-13.fc39.i686 64/152 Verifying : libcap-2.48-7.fc39.i686 65/152 Verifying : libcap-ng-0.8.3-7.fc39.i686 66/152 Verifying : libcom_err-1.47.0-2.fc39.i686 67/152 Verifying : libcurl-8.2.1-2.fc40.i686 68/152 Verifying : libdb-5.3.28-56.fc39.i686 69/152 Verifying : libeconf-0.5.2-1.fc40.i686 70/152 Verifying : libevent-2.1.12-9.fc39.i686 71/152 Verifying : libfdisk-2.39.2-1.fc40.i686 72/152 Verifying : libffi-3.4.4-4.fc39.i686 73/152 Verifying : libgcc-13.2.1-1.fc39.i686 74/152 Verifying : libgomp-13.2.1-1.fc39.i686 75/152 Verifying : libidn2-2.3.4-3.fc39.i686 76/152 Verifying : libmount-2.39.2-1.fc40.i686 77/152 Verifying : libnghttp2-1.55.1-2.fc39.i686 78/152 Verifying : libnsl2-2.0.0-6.fc39.i686 79/152 Verifying : libpkgconf-1.9.5-2.fc39.i686 80/152 Verifying : libpsl-0.21.2-4.fc39.i686 81/152 Verifying : libpwquality-1.4.5-6.fc39.i686 82/152 Verifying : libselinux-3.5-5.fc39.i686 83/152 Verifying : libsemanage-3.5-4.fc39.i686 84/152 Verifying : libsepol-3.5-2.fc39.i686 85/152 Verifying : libsigsegv-2.14-5.fc39.i686 86/152 Verifying : libsmartcols-2.39.2-1.fc40.i686 87/152 Verifying : libssh-0.10.5-2.fc39.i686 88/152 Verifying : libssh-config-0.10.5-2.fc39.noarch 89/152 Verifying : libstdc++-13.2.1-1.fc39.i686 90/152 Verifying : libtasn1-4.19.0-3.fc39.i686 91/152 Verifying : libtirpc-1.3.3-1.rc2.fc39.i686 92/152 Verifying : libunistring-1.1-5.fc40.i686 93/152 Verifying : libutempter-1.2.1-10.fc39.i686 94/152 Verifying : libuuid-2.39.2-1.fc40.i686 95/152 Verifying : libverto-0.3.2-6.fc39.i686 96/152 Verifying : libxcrypt-4.4.36-2.fc39.i686 97/152 Verifying : libxml2-2.11.5-1.fc40.i686 98/152 Verifying : libzstd-1.5.5-4.fc39.i686 99/152 Verifying : lua-libs-5.4.6-3.fc39.i686 100/152 Verifying : lua-srpm-macros-1-9.fc39.noarch 101/152 Verifying : lz4-libs-1.9.4-4.fc39.i686 102/152 Verifying : mpfr-4.2.0-3.fc39.i686 103/152 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 104/152 Verifying : openblas-srpm-macros-2-14.fc39.noarch 105/152 Verifying : openldap-2.6.6-1.fc39.i686 106/152 Verifying : openssl-libs-1:3.1.1-3.fc40.i686 107/152 Verifying : p11-kit-0.25.0-2.fc39.i686 108/152 Verifying : p11-kit-trust-0.25.0-2.fc39.i686 109/152 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 110/152 Verifying : pam-1.5.3-2.fc39.i686 111/152 Verifying : pam-libs-1.5.3-2.fc39.i686 112/152 Verifying : patch-2.7.6-22.fc39.i686 113/152 Verifying : pcre2-10.42-1.fc39.2.i686 114/152 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 115/152 Verifying : perl-srpm-macros-1-51.fc39.noarch 116/152 Verifying : pkgconf-1.9.5-2.fc39.i686 117/152 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 118/152 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.i686 119/152 Verifying : popt-1.19-3.fc39.i686 120/152 Verifying : publicsuffix-list-dafsa-20230812-1.fc40.noarch 121/152 Verifying : pyproject-srpm-macros-1.9.0-2.fc39.noarch 122/152 Verifying : python-srpm-macros-3.12-2.fc39.noarch 123/152 Verifying : qt5-srpm-macros-5.15.10-2.fc39.noarch 124/152 Verifying : qt6-srpm-macros-6.5.2-2.fc39.noarch 125/152 Verifying : readline-8.2-4.fc39.i686 126/152 Verifying : redhat-rpm-config-265-1.fc40.noarch 127/152 Verifying : rpm-4.18.92-3.fc40.i686 128/152 Verifying : rpm-build-4.18.92-3.fc40.i686 129/152 Verifying : rpm-build-libs-4.18.92-3.fc40.i686 130/152 Verifying : rpm-libs-4.18.92-3.fc40.i686 131/152 Verifying : rpm-sequoia-1.4.1-2.fc39.i686 132/152 Verifying : rust-srpm-macros-24-5.fc40.noarch 133/152 Verifying : sed-4.8-14.fc39.i686 134/152 Verifying : setup-2.14.4-1.fc39.noarch 135/152 Verifying : shadow-utils-2:4.14.0-1.fc40.i686 136/152 Verifying : sqlite-libs-3.42.0-7.fc39.i686 137/152 Verifying : systemd-libs-254.1-2.fc40.i686 138/152 Verifying : tar-2:1.35-2.fc40.i686 139/152 Verifying : tzdata-2023c-3.fc40.noarch 140/152 Verifying : unzip-6.0-62.fc39.i686 141/152 Verifying : util-linux-2.39.2-1.fc40.i686 142/152 Verifying : util-linux-core-2.39.2-1.fc40.i686 143/152 Verifying : which-2.21-40.fc39.i686 144/152 Verifying : xxhash-libs-0.8.2-1.fc39.i686 145/152 Verifying : xz-5.4.4-1.fc39.i686 146/152 Verifying : xz-libs-5.4.4-1.fc39.i686 147/152 Verifying : zip-3.0-38.fc39.i686 148/152 Verifying : zlib-1.2.13-4.fc39.i686 149/152 Verifying : zstd-1.5.5-4.fc39.i686 150/152 Verifying : ncurses-base-6.4-7.20230520.fc39.noarch 151/152 Verifying : ncurses-libs-6.4-7.20230520.fc39.i686 152/152 Installed: alternatives-1.25-1.fc39.i686 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-2.fc40.i686 authselect-1.4.2-3.fc39.i686 authselect-libs-1.4.2-3.fc39.i686 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.i686 binutils-2.41-5.fc40.i686 binutils-gold-2.41-5.fc40.i686 bzip2-1.0.8-16.fc39.i686 bzip2-libs-1.0.8-16.fc39.i686 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch coreutils-9.3-2.fc39.i686 coreutils-common-9.3-2.fc39.i686 cpio-2.14-4.fc39.i686 cracklib-2.9.11-2.fc39.i686 crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.2.1-2.fc40.i686 cyrus-sasl-lib-2.1.28-11.fc39.i686 debugedit-5.0-10.fc39.i686 diffutils-3.10-3.fc39.i686 dwz-0.15-3.fc39.i686 ed-1.19-4.fc39.i686 efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.i686 elfutils-debuginfod-client-0.189-6.fc40.i686 elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.i686 elfutils-libs-0.189-6.fc40.i686 fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.6.noarch fedora-release-common-40-0.6.noarch fedora-release-identity-basic-40-0.6.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.i686 file-libs-5.45-1.fc40.i686 filesystem-3.18-6.fc39.i686 findutils-1:4.9.0-5.fc39.i686 fonts-srpm-macros-1:2.0.5-12.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.i686 gdb-minimal-13.2-7.fc39.i686 gdbm-libs-1:1.23-4.fc39.i686 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-1.fc39.i686 glibc-common-2.38-1.fc39.i686 glibc-gconv-extra-2.38-1.fc39.i686 glibc-minimal-langpack-2.38-1.fc39.i686 gmp-1:6.2.1-5.fc39.i686 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-6.fc39.noarch grep-3.11-5.fc40.i686 gzip-1.12-6.fc39.i686 info-7.0.3-3.fc39.i686 jansson-2.13.1-7.fc39.i686 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.i686 krb5-libs-1.21.2-1.fc40.i686 libacl-2.3.1-8.fc39.i686 libarchive-3.7.1-1.fc39.i686 libattr-2.5.1-8.fc39.i686 libblkid-2.39.2-1.fc40.i686 libbrotli-1.0.9-13.fc39.i686 libcap-2.48-7.fc39.i686 libcap-ng-0.8.3-7.fc39.i686 libcom_err-1.47.0-2.fc39.i686 libcurl-8.2.1-2.fc40.i686 libdb-5.3.28-56.fc39.i686 libeconf-0.5.2-1.fc40.i686 libevent-2.1.12-9.fc39.i686 libfdisk-2.39.2-1.fc40.i686 libffi-3.4.4-4.fc39.i686 libgcc-13.2.1-1.fc39.i686 libgomp-13.2.1-1.fc39.i686 libidn2-2.3.4-3.fc39.i686 libmount-2.39.2-1.fc40.i686 libnghttp2-1.55.1-2.fc39.i686 libnsl2-2.0.0-6.fc39.i686 libpkgconf-1.9.5-2.fc39.i686 libpsl-0.21.2-4.fc39.i686 libpwquality-1.4.5-6.fc39.i686 libselinux-3.5-5.fc39.i686 libsemanage-3.5-4.fc39.i686 libsepol-3.5-2.fc39.i686 libsigsegv-2.14-5.fc39.i686 libsmartcols-2.39.2-1.fc40.i686 libssh-0.10.5-2.fc39.i686 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-1.fc39.i686 libtasn1-4.19.0-3.fc39.i686 libtirpc-1.3.3-1.rc2.fc39.i686 libunistring-1.1-5.fc40.i686 libutempter-1.2.1-10.fc39.i686 libuuid-2.39.2-1.fc40.i686 libverto-0.3.2-6.fc39.i686 libxcrypt-4.4.36-2.fc39.i686 libxml2-2.11.5-1.fc40.i686 libzstd-1.5.5-4.fc39.i686 lua-libs-5.4.6-3.fc39.i686 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.i686 mpfr-4.2.0-3.fc39.i686 ncurses-base-6.4-7.20230520.fc39.noarch ncurses-libs-6.4-7.20230520.fc39.i686 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.i686 openssl-libs-1:3.1.1-3.fc40.i686 p11-kit-0.25.0-2.fc39.i686 p11-kit-trust-0.25.0-2.fc39.i686 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.i686 pam-libs-1.5.3-2.fc39.i686 patch-2.7.6-22.fc39.i686 pcre2-10.42-1.fc39.2.i686 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.i686 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.i686 popt-1.19-3.fc39.i686 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-2.fc39.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-2.fc39.noarch readline-8.2-4.fc39.i686 redhat-rpm-config-265-1.fc40.noarch rpm-4.18.92-3.fc40.i686 rpm-build-4.18.92-3.fc40.i686 rpm-build-libs-4.18.92-3.fc40.i686 rpm-libs-4.18.92-3.fc40.i686 rpm-sequoia-1.4.1-2.fc39.i686 rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.i686 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-1.fc40.i686 sqlite-libs-3.42.0-7.fc39.i686 systemd-libs-254.1-2.fc40.i686 tar-2:1.35-2.fc40.i686 tzdata-2023c-3.fc40.noarch unzip-6.0-62.fc39.i686 util-linux-2.39.2-1.fc40.i686 util-linux-core-2.39.2-1.fc40.i686 which-2.21-40.fc39.i686 xxhash-libs-0.8.2-1.fc39.i686 xz-5.4.4-1.fc39.i686 xz-libs-5.4.4-1.fc39.i686 zip-3.0-38.fc39.i686 zlib-1.2.13-4.fc39.i686 zstd-1.5.5-4.fc39.i686 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: libblkid-2.39.2-1.fc40.i686 glibc-gconv-extra-2.38-1.fc39.i686 bzip2-libs-1.0.8-16.fc39.i686 curl-8.2.1-2.fc40.i686 p11-kit-0.25.0-2.fc39.i686 popt-1.19-3.fc39.i686 audit-libs-3.1.2-2.fc40.i686 gawk-5.2.2-2.fc39.i686 kernel-srpm-macros-1.0-20.fc39.noarch ghc-srpm-macros-1.6.1-2.fc39.noarch xz-5.4.4-1.fc39.i686 tar-1.35-2.fc40.i686 rpm-build-4.18.92-3.fc40.i686 lz4-libs-1.9.4-4.fc39.i686 diffutils-3.10-3.fc39.i686 debugedit-5.0-10.fc39.i686 libbrotli-1.0.9-13.fc39.i686 libtirpc-1.3.3-1.rc2.fc39.i686 rust-srpm-macros-24-5.fc40.noarch libpsl-0.21.2-4.fc39.i686 libutempter-1.2.1-10.fc39.i686 coreutils-9.3-2.fc39.i686 libssh-config-0.10.5-2.fc39.noarch dwz-0.15-3.fc39.i686 fedora-release-identity-basic-40-0.6.noarch libsigsegv-2.14-5.fc39.i686 rpm-libs-4.18.92-3.fc40.i686 zlib-1.2.13-4.fc39.i686 libcap-2.48-7.fc39.i686 fedora-release-common-40-0.6.noarch libzstd-1.5.5-4.fc39.i686 libmount-2.39.2-1.fc40.i686 openblas-srpm-macros-2-14.fc39.noarch pkgconf-m4-1.9.5-2.fc39.noarch gdbm-libs-1.23-4.fc39.i686 zip-3.0-38.fc39.i686 libgcc-13.2.1-1.fc39.i686 glibc-2.38-1.fc39.i686 elfutils-0.189-6.fc40.i686 libpwquality-1.4.5-6.fc39.i686 libarchive-3.7.1-1.fc39.i686 ncurses-libs-6.4-7.20230520.fc39.i686 elfutils-libelf-0.189-6.fc40.i686 fonts-srpm-macros-2.0.5-12.fc39.noarch readline-8.2-4.fc39.i686 crypto-policies-20230731-1.git5ed06e0.fc39.noarch authselect-1.4.2-3.fc39.i686 libffi-3.4.4-4.fc39.i686 binutils-gold-2.41-5.fc40.i686 ncurses-base-6.4-7.20230520.fc39.noarch libgomp-13.2.1-1.fc39.i686 gnat-srpm-macros-6-3.fc39.noarch sed-4.8-14.fc39.i686 xxhash-libs-0.8.2-1.fc39.i686 rpm-4.18.92-3.fc40.i686 filesystem-3.18-6.fc39.i686 fpc-srpm-macros-1.3-8.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.i686 libxml2-2.11.5-1.fc40.i686 openssl-libs-3.1.1-3.fc40.i686 libattr-2.5.1-8.fc39.i686 libssh-0.10.5-2.fc39.i686 libpkgconf-1.9.5-2.fc39.i686 pcre2-10.42-1.fc39.2.i686 elfutils-default-yama-scope-0.189-6.fc40.noarch bzip2-1.0.8-16.fc39.i686 rpm-build-libs-4.18.92-3.fc40.i686 perl-srpm-macros-1-51.fc39.noarch openldap-2.6.6-1.fc39.i686 libacl-2.3.1-8.fc39.i686 coreutils-common-9.3-2.fc39.i686 libcurl-8.2.1-2.fc40.i686 bash-5.2.15-5.fc39.i686 pkgconf-1.9.5-2.fc39.i686 gzip-1.12-6.fc39.i686 sqlite-libs-3.42.0-7.fc39.i686 pam-libs-1.5.3-2.fc39.i686 libeconf-0.5.2-1.fc40.i686 p11-kit-trust-0.25.0-2.fc39.i686 libxcrypt-4.4.36-2.fc39.i686 grep-3.11-5.fc40.i686 ansible-srpm-macros-1-11.fc39.noarch cyrus-sasl-lib-2.1.28-11.fc39.i686 libsepol-3.5-2.fc39.i686 gdb-minimal-13.2-7.fc39.i686 fedora-gpg-keys-40-0.1.noarch pcre2-syntax-10.42-1.fc39.2.noarch libuuid-2.39.2-1.fc40.i686 fedora-repos-rawhide-40-0.1.noarch glibc-minimal-langpack-2.38-1.fc39.i686 libnsl2-2.0.0-6.fc39.i686 libcap-ng-0.8.3-7.fc39.i686 libselinux-3.5-5.fc39.i686 elfutils-libs-0.189-6.fc40.i686 ocaml-srpm-macros-8-2.fc39.noarch alternatives-1.25-1.fc39.i686 file-5.45-1.fc40.i686 qt5-srpm-macros-5.15.10-2.fc39.noarch basesystem-11-18.fc39.noarch libnghttp2-1.55.1-2.fc39.i686 info-7.0.3-3.fc39.i686 cracklib-2.9.11-2.fc39.i686 qt6-srpm-macros-6.5.2-2.fc39.noarch package-notes-srpm-macros-0.5-9.fc39.noarch libdb-5.3.28-56.fc39.i686 efi-srpm-macros-5-9.fc39.noarch ed-1.19-4.fc39.i686 tzdata-2023c-3.fc40.noarch go-srpm-macros-3.2.0-6.fc39.noarch unzip-6.0-62.fc39.i686 systemd-libs-254.1-2.fc40.i686 fedora-release-40-0.6.noarch file-libs-5.45-1.fc40.i686 zstd-1.5.5-4.fc39.i686 setup-2.14.4-1.fc39.noarch libfdisk-2.39.2-1.fc40.i686 publicsuffix-list-dafsa-20230812-1.fc40.noarch libstdc++-13.2.1-1.fc39.i686 which-2.21-40.fc39.i686 libcom_err-1.47.0-2.fc39.i686 keyutils-libs-1.6.1-7.fc39.i686 lua-libs-5.4.6-3.fc39.i686 util-linux-2.39.2-1.fc40.i686 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch libsemanage-3.5-4.fc39.i686 pam-1.5.3-2.fc39.i686 libsmartcols-2.39.2-1.fc40.i686 binutils-2.41-5.fc40.i686 python-srpm-macros-3.12-2.fc39.noarch gmp-6.2.1-5.fc39.i686 mpfr-4.2.0-3.fc39.i686 xz-libs-5.4.4-1.fc39.i686 libtasn1-4.19.0-3.fc39.i686 util-linux-core-2.39.2-1.fc40.i686 fedora-repos-40-0.1.noarch patch-2.7.6-22.fc39.i686 cpio-2.14-4.fc39.i686 rpm-sequoia-1.4.1-2.fc39.i686 shadow-utils-4.14.0-1.fc40.i686 libunistring-1.1-5.fc40.i686 redhat-rpm-config-265-1.fc40.noarch findutils-4.9.0-5.fc39.i686 authselect-libs-1.4.2-3.fc39.i686 pyproject-srpm-macros-1.9.0-2.fc39.noarch jansson-2.13.1-7.fc39.i686 libverto-0.3.2-6.fc39.i686 libidn2-2.3.4-3.fc39.i686 elfutils-debuginfod-client-0.189-6.fc40.i686 glibc-common-2.38-1.fc39.i686 libevent-2.1.12-9.fc39.i686 lua-srpm-macros-1-9.fc39.noarch krb5-libs-1.21.2-1.fc40.i686 Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1693267200 Wrote: /builddir/build/SRPMS/libsonata-0.1.23-1.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-i686-1693311891.404284/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-i686-1693311891.404284/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-i686-1693311891.404284/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-j6tp_g_e/libsonata/libsonata.spec) Config(child) 1 minutes 51 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/libsonata-0.1.23-1.fc40.src.rpm) Config(fedora-39-i686) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-i686-bootstrap-1693311891.404284/root. INFO: reusing tmpfs at /var/lib/mock/fedora-39-i686-bootstrap-1693311891.404284/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-i686-1693311891.404284/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init Start: build phase for libsonata-0.1.23-1.fc40.src.rpm Start: build setup for libsonata-0.1.23-1.fc40.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1693267200 Wrote: /builddir/build/SRPMS/libsonata-0.1.23-1.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 29 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 29 kB/s | 3.8 kB 00:00 local 55 kB/s | 3.8 kB 00:00 Dependencies resolved. ================================================================================================================================= Package Arch Version Repository Size ================================================================================================================================= Installing: boost-devel i686 1.81.0-7.fc39 local 12 M catch2-devel i686 2.13.10-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 197 k cmake i686 3.27.4-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10 M fmt-devel i686 10.0.0-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 128 k gcc-c++ i686 13.2.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13 M git-core i686 2.41.0-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.5 M hdf5-devel i686 1.12.1-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 M highfive-devel i686 2.3.1-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 57 k json-devel i686 3.11.2-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 155 k pybind11-devel i686 2.11.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 168 k python3-devel i686 3.12.0~rc1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 273 k python3-h5py i686 3.8.0-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 951 k python3-pip noarch 23.2.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.9 M python3-pybind11 i686 2.11.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 187 k python3-pytest noarch 7.4.0-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M python3-setuptools noarch 67.7.2-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 M python3-setuptools_scm noarch 7.1.0-7.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 93 k python3-wheel noarch 1:0.40.0-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146 k Installing dependencies: annobin-docs noarch 12.24-1.fc39 local 96 k annobin-plugin-gcc i686 12.24-1.fc39 local 961 k boost i686 1.81.0-7.fc39 local 14 k boost-atomic i686 1.81.0-7.fc39 local 20 k boost-chrono i686 1.81.0-7.fc39 local 27 k boost-container i686 1.81.0-7.fc39 local 41 k boost-context i686 1.81.0-7.fc39 local 17 k boost-contract i686 1.81.0-7.fc39 local 48 k boost-coroutine i686 1.81.0-7.fc39 local 21 k boost-date-time i686 1.81.0-7.fc39 local 16 k boost-fiber i686 1.81.0-7.fc39 local 45 k boost-filesystem i686 1.81.0-7.fc39 local 73 k boost-graph i686 1.81.0-7.fc39 local 159 k boost-iostreams i686 1.81.0-7.fc39 local 45 k boost-json i686 1.81.0-7.fc39 local 122 k boost-locale i686 1.81.0-7.fc39 local 244 k boost-log i686 1.81.0-7.fc39 local 533 k boost-math i686 1.81.0-7.fc39 local 217 k boost-nowide i686 1.81.0-7.fc39 local 22 k boost-numpy3 i686 1.81.0-7.fc39 local 31 k boost-program-options i686 1.81.0-7.fc39 local 118 k boost-python3 i686 1.81.0-7.fc39 local 104 k boost-random i686 1.81.0-7.fc39 local 25 k boost-regex i686 1.81.0-7.fc39 local 117 k boost-serialization i686 1.81.0-7.fc39 local 145 k boost-stacktrace i686 1.81.0-7.fc39 local 31 k boost-system i686 1.81.0-7.fc39 local 16 k boost-test i686 1.81.0-7.fc39 local 257 k boost-thread i686 1.81.0-7.fc39 local 63 k boost-timer i686 1.81.0-7.fc39 local 25 k boost-type_erasure i686 1.81.0-7.fc39 local 35 k boost-wave i686 1.81.0-7.fc39 local 230 k cmake-data noarch 3.27.4-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 M cmake-filesystem i686 3.27.4-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 18 k cmake-rpm-macros noarch 3.27.4-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17 k cpp i686 13.2.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11 M emacs-filesystem noarch 1:29.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.4 k expat i686 2.5.0-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 114 k flexiblas i686 3.3.1-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 33 k flexiblas-netlib i686 3.3.1-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.1 M flexiblas-openblas-openmp i686 3.3.1-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17 k fmt i686 10.0.0-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 131 k gc i686 8.2.2-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 113 k gcc i686 13.2.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 34 M gcc-gfortran i686 13.2.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 12 M gcc-plugin-annobin i686 13.2.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 47 k glibc-devel i686 2.38-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 76 k glibc-headers-x86 noarch 2.38-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 490 k guile22 i686 2.2.7-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.5 M hdf5 i686 1.12.1-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M jsoncpp i686 1.9.5-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 109 k kernel-headers i686 6.5.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 M less i686 633-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 181 k libaec i686 1.0.6-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 44 k libaec-devel i686 1.0.6-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 12 k libasan i686 13.2.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 506 k libatomic i686 13.2.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 32 k libb2 i686 0.98.1-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 28 k libcbor i686 0.10.2-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 61 k libedit i686 3.1-48.20230828cvs.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 110 k libfido2 i686 1.13.0-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 105 k libgfortran i686 13.2.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 838 k libicu i686 73.2-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11 M libicu-devel i686 73.2-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 849 k liblzf i686 3.6-26.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 28 k libmpc i686 1.3.1-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 77 k libquadmath i686 13.2.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 241 k libquadmath-devel i686 13.2.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36 k libstdc++-devel i686 13.2.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 M libtool-ltdl i686 2.4.7-7.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38 k libubsan i686 13.2.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 234 k libuv i686 1:1.46.0-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 166 k libxcrypt-devel i686 4.4.36-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30 k make i686 1:4.4.1-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 589 k mpdecimal i686 2.5.1-7.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 91 k openblas i686 0.3.21-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35 k openblas-openmp i686 0.3.21-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.9 M openssh i686 9.3p1-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 445 k openssh-clients i686 9.3p1-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 751 k pyproject-rpm-macros noarch 1.9.0-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k python-pip-wheel noarch 23.2.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 M python-rpm-macros noarch 3.12-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19 k python3 i686 3.12.0~rc1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 26 k python3-cached_property noarch 1.5.2-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20 k python3-iniconfig noarch 1.1.1-14.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 18 k python3-libs i686 3.12.0~rc1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.9 M python3-numpy i686 1:1.24.4-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.1 M python3-packaging noarch 23.1-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 105 k python3-pluggy noarch 1.2.0-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 48 k python3-rpm-generators noarch 14-7.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30 k python3-rpm-macros noarch 3.12-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14 k python3-six noarch 1.16.0-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k python3-typing-extensions noarch 4.7.1-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 79 k rhash i686 1.4.3-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 210 k vim-filesystem noarch 2:9.0.1712-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 18 k zlib-devel i686 1.2.13-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 44 k Transaction Summary ================================================================================================================================= Install 114 Packages Total download size: 167 M Installed size: 694 M Downloading Packages: (1/114): catch2-devel-2.13.10-2.fc39.i686.rpm 1.0 MB/s | 197 kB 00:00 (2/114): cmake-filesystem-3.27.4-2.fc40.i686.rp 414 kB/s | 18 kB 00:00 (3/114): cmake-rpm-macros-3.27.4-2.fc40.noarch. 317 kB/s | 17 kB 00:00 (4/114): cmake-data-3.27.4-2.fc40.noarch.rpm 4.8 MB/s | 1.7 MB 00:00 (5/114): emacs-filesystem-29.1-1.fc39.noarch.rp 124 kB/s | 8.4 kB 00:00 (6/114): expat-2.5.0-3.fc39.i686.rpm 1.4 MB/s | 114 kB 00:00 (7/114): flexiblas-3.3.1-5.fc39.i686.rpm 607 kB/s | 33 kB 00:00 (8/114): flexiblas-netlib-3.3.1-5.fc39.i686.rpm 6.4 MB/s | 3.1 MB 00:00 (9/114): flexiblas-openblas-openmp-3.3.1-5.fc39 414 kB/s | 17 kB 00:00 (10/114): fmt-10.0.0-3.fc39.i686.rpm 2.2 MB/s | 131 kB 00:00 (11/114): fmt-devel-10.0.0-3.fc39.i686.rpm 3.2 MB/s | 128 kB 00:00 (12/114): gc-8.2.2-4.fc39.i686.rpm 3.3 MB/s | 113 kB 00:00 (13/114): cmake-3.27.4-2.fc40.i686.rpm 5.4 MB/s | 10 MB 00:01 (14/114): cpp-13.2.1-1.fc39.i686.rpm 5.7 MB/s | 11 MB 00:01 (15/114): gcc-c++-13.2.1-1.fc39.i686.rpm 10 MB/s | 13 MB 00:01 (16/114): gcc-plugin-annobin-13.2.1-1.fc39.i686 1.9 MB/s | 47 kB 00:00 (17/114): gcc-13.2.1-1.fc39.i686.rpm 14 MB/s | 34 MB 00:02 (18/114): glibc-devel-2.38-1.fc39.i686.rpm 1.3 MB/s | 76 kB 00:00 (19/114): git-core-2.41.0-2.fc39.i686.rpm 6.9 MB/s | 4.5 MB 00:00 (20/114): glibc-headers-x86-2.38-1.fc39.noarch. 8.4 MB/s | 490 kB 00:00 (21/114): gcc-gfortran-13.2.1-1.fc39.i686.rpm 7.1 MB/s | 12 MB 00:01 (22/114): hdf5-1.12.1-12.fc39.i686.rpm 12 MB/s | 2.1 MB 00:00 (23/114): highfive-devel-2.3.1-9.fc39.i686.rpm 2.3 MB/s | 57 kB 00:00 (24/114): json-devel-3.11.2-3.fc39.i686.rpm 6.7 MB/s | 155 kB 00:00 (25/114): jsoncpp-1.9.5-5.fc39.i686.rpm 4.7 MB/s | 109 kB 00:00 (26/114): hdf5-devel-1.12.1-12.fc39.i686.rpm 12 MB/s | 1.3 MB 00:00 (27/114): 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54/114 Verifying : openssh-clients-9.3p1-9.fc40.i686 55/114 Verifying : pybind11-devel-2.11.1-1.fc39.i686 56/114 Verifying : pyproject-rpm-macros-1.9.0-2.fc39.noarch 57/114 Verifying : python-pip-wheel-23.2.1-1.fc39.noarch 58/114 Verifying : python-rpm-macros-3.12-2.fc39.noarch 59/114 Verifying : python3-3.12.0~rc1-1.fc40.i686 60/114 Verifying : python3-cached_property-1.5.2-11.fc39.noarch 61/114 Verifying : python3-devel-3.12.0~rc1-1.fc40.i686 62/114 Verifying : python3-h5py-3.8.0-4.fc39.i686 63/114 Verifying : python3-iniconfig-1.1.1-14.fc39.noarch 64/114 Verifying : python3-libs-3.12.0~rc1-1.fc40.i686 65/114 Verifying : python3-numpy-1:1.24.4-2.fc39.i686 66/114 Verifying : python3-packaging-23.1-5.fc40.noarch 67/114 Verifying : python3-pip-23.2.1-1.fc39.noarch 68/114 Verifying : python3-pluggy-1.2.0-1.fc39.noarch 69/114 Verifying : python3-pybind11-2.11.1-1.fc39.i686 70/114 Verifying : python3-pytest-7.4.0-4.fc40.noarch 71/114 Verifying : python3-rpm-generators-14-7.fc39.noarch 72/114 Verifying : python3-rpm-macros-3.12-2.fc39.noarch 73/114 Verifying : python3-setuptools-67.7.2-5.fc39.noarch 74/114 Verifying : python3-setuptools_scm-7.1.0-7.fc39.noarch 75/114 Verifying : python3-six-1.16.0-12.fc39.noarch 76/114 Verifying : python3-typing-extensions-4.7.1-2.fc39.noarch 77/114 Verifying : python3-wheel-1:0.40.0-4.fc39.noarch 78/114 Verifying : rhash-1.4.3-3.fc39.i686 79/114 Verifying : vim-filesystem-2:9.0.1712-1.fc40.noarch 80/114 Verifying : zlib-devel-1.2.13-4.fc39.i686 81/114 Verifying : annobin-docs-12.24-1.fc39.noarch 82/114 Verifying : annobin-plugin-gcc-12.24-1.fc39.i686 83/114 Verifying : boost-1.81.0-7.fc39.i686 84/114 Verifying : boost-atomic-1.81.0-7.fc39.i686 85/114 Verifying : boost-chrono-1.81.0-7.fc39.i686 86/114 Verifying : boost-container-1.81.0-7.fc39.i686 87/114 Verifying : boost-context-1.81.0-7.fc39.i686 88/114 Verifying : boost-contract-1.81.0-7.fc39.i686 89/114 Verifying : boost-coroutine-1.81.0-7.fc39.i686 90/114 Verifying : boost-date-time-1.81.0-7.fc39.i686 91/114 Verifying : boost-devel-1.81.0-7.fc39.i686 92/114 Verifying : boost-fiber-1.81.0-7.fc39.i686 93/114 Verifying : boost-filesystem-1.81.0-7.fc39.i686 94/114 Verifying : boost-graph-1.81.0-7.fc39.i686 95/114 Verifying : boost-iostreams-1.81.0-7.fc39.i686 96/114 Verifying : boost-json-1.81.0-7.fc39.i686 97/114 Verifying : boost-locale-1.81.0-7.fc39.i686 98/114 Verifying : boost-log-1.81.0-7.fc39.i686 99/114 Verifying : boost-math-1.81.0-7.fc39.i686 100/114 Verifying : boost-nowide-1.81.0-7.fc39.i686 101/114 Verifying : boost-numpy3-1.81.0-7.fc39.i686 102/114 Verifying : boost-program-options-1.81.0-7.fc39.i686 103/114 Verifying : boost-python3-1.81.0-7.fc39.i686 104/114 Verifying : boost-random-1.81.0-7.fc39.i686 105/114 Verifying : boost-regex-1.81.0-7.fc39.i686 106/114 Verifying : boost-serialization-1.81.0-7.fc39.i686 107/114 Verifying : boost-stacktrace-1.81.0-7.fc39.i686 108/114 Verifying : boost-system-1.81.0-7.fc39.i686 109/114 Verifying : boost-test-1.81.0-7.fc39.i686 110/114 Verifying : boost-thread-1.81.0-7.fc39.i686 111/114 Verifying : boost-timer-1.81.0-7.fc39.i686 112/114 Verifying : boost-type_erasure-1.81.0-7.fc39.i686 113/114 Verifying : boost-wave-1.81.0-7.fc39.i686 114/114 Installed: annobin-docs-12.24-1.fc39.noarch annobin-plugin-gcc-12.24-1.fc39.i686 boost-1.81.0-7.fc39.i686 boost-atomic-1.81.0-7.fc39.i686 boost-chrono-1.81.0-7.fc39.i686 boost-container-1.81.0-7.fc39.i686 boost-context-1.81.0-7.fc39.i686 boost-contract-1.81.0-7.fc39.i686 boost-coroutine-1.81.0-7.fc39.i686 boost-date-time-1.81.0-7.fc39.i686 boost-devel-1.81.0-7.fc39.i686 boost-fiber-1.81.0-7.fc39.i686 boost-filesystem-1.81.0-7.fc39.i686 boost-graph-1.81.0-7.fc39.i686 boost-iostreams-1.81.0-7.fc39.i686 boost-json-1.81.0-7.fc39.i686 boost-locale-1.81.0-7.fc39.i686 boost-log-1.81.0-7.fc39.i686 boost-math-1.81.0-7.fc39.i686 boost-nowide-1.81.0-7.fc39.i686 boost-numpy3-1.81.0-7.fc39.i686 boost-program-options-1.81.0-7.fc39.i686 boost-python3-1.81.0-7.fc39.i686 boost-random-1.81.0-7.fc39.i686 boost-regex-1.81.0-7.fc39.i686 boost-serialization-1.81.0-7.fc39.i686 boost-stacktrace-1.81.0-7.fc39.i686 boost-system-1.81.0-7.fc39.i686 boost-test-1.81.0-7.fc39.i686 boost-thread-1.81.0-7.fc39.i686 boost-timer-1.81.0-7.fc39.i686 boost-type_erasure-1.81.0-7.fc39.i686 boost-wave-1.81.0-7.fc39.i686 catch2-devel-2.13.10-2.fc39.i686 cmake-3.27.4-2.fc40.i686 cmake-data-3.27.4-2.fc40.noarch cmake-filesystem-3.27.4-2.fc40.i686 cmake-rpm-macros-3.27.4-2.fc40.noarch cpp-13.2.1-1.fc39.i686 emacs-filesystem-1:29.1-1.fc39.noarch expat-2.5.0-3.fc39.i686 flexiblas-3.3.1-5.fc39.i686 flexiblas-netlib-3.3.1-5.fc39.i686 flexiblas-openblas-openmp-3.3.1-5.fc39.i686 fmt-10.0.0-3.fc39.i686 fmt-devel-10.0.0-3.fc39.i686 gc-8.2.2-4.fc39.i686 gcc-13.2.1-1.fc39.i686 gcc-c++-13.2.1-1.fc39.i686 gcc-gfortran-13.2.1-1.fc39.i686 gcc-plugin-annobin-13.2.1-1.fc39.i686 git-core-2.41.0-2.fc39.i686 glibc-devel-2.38-1.fc39.i686 glibc-headers-x86-2.38-1.fc39.noarch guile22-2.2.7-9.fc39.i686 hdf5-1.12.1-12.fc39.i686 hdf5-devel-1.12.1-12.fc39.i686 highfive-devel-2.3.1-9.fc39.i686 json-devel-3.11.2-3.fc39.i686 jsoncpp-1.9.5-5.fc39.i686 kernel-headers-6.5.0-1.fc40.i686 less-633-2.fc39.i686 libaec-1.0.6-5.fc39.i686 libaec-devel-1.0.6-5.fc39.i686 libasan-13.2.1-1.fc39.i686 libatomic-13.2.1-1.fc39.i686 libb2-0.98.1-9.fc39.i686 libcbor-0.10.2-2.fc39.i686 libedit-3.1-48.20230828cvs.fc40.i686 libfido2-1.13.0-3.fc39.i686 libgfortran-13.2.1-1.fc39.i686 libicu-73.2-2.fc39.i686 libicu-devel-73.2-2.fc39.i686 liblzf-3.6-26.fc39.i686 libmpc-1.3.1-3.fc39.i686 libquadmath-13.2.1-1.fc39.i686 libquadmath-devel-13.2.1-1.fc39.i686 libstdc++-devel-13.2.1-1.fc39.i686 libtool-ltdl-2.4.7-7.fc39.i686 libubsan-13.2.1-1.fc39.i686 libuv-1:1.46.0-2.fc39.i686 libxcrypt-devel-4.4.36-2.fc39.i686 make-1:4.4.1-2.fc39.i686 mpdecimal-2.5.1-7.fc39.i686 openblas-0.3.21-6.fc39.i686 openblas-openmp-0.3.21-6.fc39.i686 openssh-9.3p1-9.fc40.i686 openssh-clients-9.3p1-9.fc40.i686 pybind11-devel-2.11.1-1.fc39.i686 pyproject-rpm-macros-1.9.0-2.fc39.noarch python-pip-wheel-23.2.1-1.fc39.noarch python-rpm-macros-3.12-2.fc39.noarch python3-3.12.0~rc1-1.fc40.i686 python3-cached_property-1.5.2-11.fc39.noarch python3-devel-3.12.0~rc1-1.fc40.i686 python3-h5py-3.8.0-4.fc39.i686 python3-iniconfig-1.1.1-14.fc39.noarch python3-libs-3.12.0~rc1-1.fc40.i686 python3-numpy-1:1.24.4-2.fc39.i686 python3-packaging-23.1-5.fc40.noarch python3-pip-23.2.1-1.fc39.noarch python3-pluggy-1.2.0-1.fc39.noarch python3-pybind11-2.11.1-1.fc39.i686 python3-pytest-7.4.0-4.fc40.noarch python3-rpm-generators-14-7.fc39.noarch python3-rpm-macros-3.12-2.fc39.noarch python3-setuptools-67.7.2-5.fc39.noarch python3-setuptools_scm-7.1.0-7.fc39.noarch python3-six-1.16.0-12.fc39.noarch python3-typing-extensions-4.7.1-2.fc39.noarch python3-wheel-1:0.40.0-4.fc39.noarch rhash-1.4.3-3.fc39.i686 vim-filesystem-2:9.0.1712-1.fc40.noarch zlib-devel-1.2.13-4.fc39.i686 Complete! Finish: build setup for libsonata-0.1.23-1.fc40.src.rpm Start: rpmbuild libsonata-0.1.23-1.fc40.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1693267200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.BZLFQP + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf libsonata-0.1.23 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/libsonata-0.1.23.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd libsonata-0.1.23 + rm -rf /builddir/build/BUILD/libsonata-0.1.23-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'libsonata-0.1.23 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-include-catch-cmake.patch + /usr/bin/git apply --index --reject - Checking patch tests/CMakeLists.txt... Applied patch tests/CMakeLists.txt cleanly. + /usr/bin/git commit -q -m 0001-include-catch-cmake.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0002-use-cpp-17-filesystem.patch + /usr/bin/git apply --index --reject - Checking patch src/config.cpp... Applied patch src/config.cpp cleanly. + /usr/bin/git commit -q -m 0002-use-cpp-17-filesystem.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0003-Remove-pybind-redeclarations.patch + /usr/bin/git apply --index --reject - Checking patch python/bindings.cpp... Applied patch python/bindings.cpp cleanly. + /usr/bin/git commit -q -m 0003-Remove-pybind-redeclarations.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0004-disable-python-ext-build.patch + /usr/bin/git apply --index --reject - Checking patch setup.py... Applied patch setup.py cleanly. + /usr/bin/git commit -q -m 0004-disable-python-ext-build.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0005-set-libdir.patch + /usr/bin/git apply --index --reject - Checking patch CMakeLists.txt... Applied patch CMakeLists.txt cleanly. + /usr/bin/git commit -q -m 0005-set-libdir.patch --author 'rpm-build ' + rm -rf libsonata.egg-info + rm -rf extlib/Catch2 extlib/Highfive extlib/fmt extlib/nlohmann + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.03lKEI + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.23 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DSONATA_PYTHON=ON -DEXTLIB_FROM_SUBMODULES=OFF -DSONATA_VERSION=0.1.23 -DSONATA_TESTS=ON -DSONATA_CXX_WARNINGS=OFF -DCMAKE_CXX_STANDARD=17 CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_policy): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 13.2.1 -- The CXX compiler identification is GNU 13.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- HIGHFIVE 2.3.1: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib/libhdf5.so (found version "1.12.1") -- Found Boost: /usr/include (found version "1.81.0") found components: system serialization -- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.2") CMake Warning (dev) at /usr/share/cmake/pybind11/FindPythonLibsNew.cmake:98 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/share/cmake/pybind11/pybind11Common.cmake:188 (include) /usr/share/cmake/pybind11/pybind11Config.cmake:250 (include) python/CMakeLists.txt:6 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12", minimum required is "3.6") -- Found PythonLibs: /usr/lib/libpython3.12.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.11.1") -- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets -- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j2 --verbose Change Dir: '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j2 /usr/bin/cmake -S/builddir/build/BUILD/libsonata-0.1.23 -B/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/CMakeFiles /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/sonata_shared.dir/build.make CMakeFiles/sonata_shared.dir/depend /usr/bin/gmake -f CMakeFiles/sonata_static.dir/build.make CMakeFiles/sonata_static.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/CMakeFiles/sonata_shared.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/CMakeFiles/sonata_static.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/sonata_static.dir/build.make CMakeFiles/sonata_static.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/sonata_shared.dir/build.make CMakeFiles/sonata_shared.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [ 2%] Building CXX object CMakeFiles/sonata_static.dir/src/common.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/common.cpp.o -MF CMakeFiles/sonata_static.dir/src/common.cpp.o.d -o CMakeFiles/sonata_static.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/common.cpp [ 5%] Building CXX object CMakeFiles/sonata_shared.dir/src/common.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -D_FILE_OFFSET_BITS=64 -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/common.cpp.o -MF CMakeFiles/sonata_shared.dir/src/common.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/common.cpp [ 8%] Building CXX object CMakeFiles/sonata_static.dir/src/config.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/config.cpp.o -MF CMakeFiles/sonata_static.dir/src/config.cpp.o.d -o CMakeFiles/sonata_static.dir/src/config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/config.cpp [ 11%] Building CXX object CMakeFiles/sonata_shared.dir/src/config.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -D_FILE_OFFSET_BITS=64 -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/config.cpp.o -MF CMakeFiles/sonata_shared.dir/src/config.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/config.cpp In file included from /usr/include/c++/13/bits/stl_uninitialized.h:63, from /usr/include/c++/13/memory:69, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/config.h:14, from /builddir/build/BUILD/libsonata-0.1.23/src/config.cpp:12: In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_uninitialized.h:63, from /usr/include/c++/13/memory:69, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/config.h:14, from /builddir/build/BUILD/libsonata-0.1.23/src/config.cpp:12: In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/sonata_static.dir/src/edge_index.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/edge_index.cpp.o -MF CMakeFiles/sonata_static.dir/src/edge_index.cpp.o.d -o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/edge_index.cpp [ 17%] Building CXX object CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -D_FILE_OFFSET_BITS=64 -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o -MF CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/edge_index.cpp [ 20%] Building CXX object CMakeFiles/sonata_static.dir/src/edges.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/edges.cpp.o -MF CMakeFiles/sonata_static.dir/src/edges.cpp.o.d -o CMakeFiles/sonata_static.dir/src/edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/edges.cpp [ 23%] Building CXX object CMakeFiles/sonata_shared.dir/src/edges.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -D_FILE_OFFSET_BITS=64 -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/edges.cpp.o -MF CMakeFiles/sonata_shared.dir/src/edges.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/edges.cpp In file included from /usr/include/c++/13/array:43, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/common.h:12, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/population.h:12, from /builddir/build/BUILD/libsonata-0.1.23/src/edge_index.h:12, from /builddir/build/BUILD/libsonata-0.1.23/src/edges.cpp:10: In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/array:43, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/common.h:12, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/population.h:12, from /builddir/build/BUILD/libsonata-0.1.23/src/edge_index.h:12, from /builddir/build/BUILD/libsonata-0.1.23/src/edges.cpp:10: In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o -MF CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o.d -o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/hdf5_mutex.cpp [ 29%] Building CXX object CMakeFiles/sonata_static.dir/src/node_sets.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/node_sets.cpp.o -MF CMakeFiles/sonata_static.dir/src/node_sets.cpp.o.d -o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp: In function 'bbp::sonata::detail::NodeSetRulePtr bbp::sonata::detail::_dispatch_node(const std::string&, const json&)': /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:491:21: warning: possibly dangling reference to a temporary [-Wdangling-reference] 491 | const auto& key = definition.begin().key(); | ^~~ /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:491:49: note: the temporary was destroyed at the end of the full expression 'nlohmann::json_abi_v3_11_2::basic_json::begin() const [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_2::adl_serializer; BinaryType = std::vector; const_iterator = nlohmann::json_abi_v3_11_2::detail::iter_impl >]().nlohmann::json_abi_v3_11_2::detail::iter_impl >::key()' 491 | const auto& key = definition.begin().key(); | ~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:492:21: warning: possibly dangling reference to a temporary [-Wdangling-reference] 492 | const auto& value = definition.begin().value(); | ^~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:492:53: note: the temporary was destroyed at the end of the full expression 'nlohmann::json_abi_v3_11_2::basic_json::begin() const [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_2::adl_serializer; BinaryType = std::vector; const_iterator = nlohmann::json_abi_v3_11_2::detail::iter_impl >]().nlohmann::json_abi_v3_11_2::detail::iter_impl >::value()' 492 | const auto& value = definition.begin().value(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ [ 32%] Building CXX object CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -D_FILE_OFFSET_BITS=64 -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o -MF CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/hdf5_mutex.cpp [ 35%] Building CXX object CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -D_FILE_OFFSET_BITS=64 -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o -MF CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp: In function 'bbp::sonata::detail::NodeSetRulePtr bbp::sonata::detail::_dispatch_node(const std::string&, const json&)': /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:491:21: warning: possibly dangling reference to a temporary [-Wdangling-reference] 491 | const auto& key = definition.begin().key(); | ^~~ /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:491:49: note: the temporary was destroyed at the end of the full expression 'nlohmann::json_abi_v3_11_2::basic_json::begin() const [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_2::adl_serializer; BinaryType = std::vector; const_iterator = nlohmann::json_abi_v3_11_2::detail::iter_impl >]().nlohmann::json_abi_v3_11_2::detail::iter_impl >::key()' 491 | const auto& key = definition.begin().key(); | ~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:492:21: warning: possibly dangling reference to a temporary [-Wdangling-reference] 492 | const auto& value = definition.begin().value(); | ^~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:492:53: note: the temporary was destroyed at the end of the full expression 'nlohmann::json_abi_v3_11_2::basic_json::begin() const [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_2::adl_serializer; BinaryType = std::vector; const_iterator = nlohmann::json_abi_v3_11_2::detail::iter_impl >]().nlohmann::json_abi_v3_11_2::detail::iter_impl >::value()' 492 | const auto& value = definition.begin().value(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/algorithm:60, from /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:1: In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3310:17: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3317:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:60, from /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:1: In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3310:17: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3317:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/sonata_static.dir/src/nodes.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/nodes.cpp.o -MF CMakeFiles/sonata_static.dir/src/nodes.cpp.o.d -o CMakeFiles/sonata_static.dir/src/nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/nodes.cpp [ 41%] Building CXX object CMakeFiles/sonata_shared.dir/src/nodes.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -D_FILE_OFFSET_BITS=64 -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/nodes.cpp.o -MF CMakeFiles/sonata_shared.dir/src/nodes.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/nodes.cpp In file included from /usr/include/c++/13/array:43, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/common.h:12, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/population.h:12, from /builddir/build/BUILD/libsonata-0.1.23/src/population.hpp:14, from /builddir/build/BUILD/libsonata-0.1.23/src/nodes.cpp:10: In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3317:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/array:43, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/common.h:12, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/population.h:12, from /builddir/build/BUILD/libsonata-0.1.23/src/population.hpp:14, from /builddir/build/BUILD/libsonata-0.1.23/src/nodes.cpp:10: In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3317:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/sonata_static.dir/src/population.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/population.cpp.o -MF CMakeFiles/sonata_static.dir/src/population.cpp.o.d -o CMakeFiles/sonata_static.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/population.cpp [ 47%] Building CXX object CMakeFiles/sonata_shared.dir/src/population.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -D_FILE_OFFSET_BITS=64 -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/population.cpp.o -MF CMakeFiles/sonata_shared.dir/src/population.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/population.cpp In file included from /usr/include/c++/13/algorithm:60, from /builddir/build/BUILD/libsonata-0.1.23/src/population.cpp:10: In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3317:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:60, from /builddir/build/BUILD/libsonata-0.1.23/src/population.cpp:10: In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3317:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object CMakeFiles/sonata_static.dir/src/report_reader.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -MF CMakeFiles/sonata_static.dir/src/report_reader.cpp.o.d -o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp: In instantiation of 'bbp::sonata::DataFrame bbp::sonata::ReportReader::Population::get(const std::optional&, const std::optional&, const std::optional&, const std::optional&, const std::optional&) const [with KeyType = long long unsigned int]': /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:587:16: required from here /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:559:42: warning: narrowing conversion of '(long long unsigned int)min' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 559 | dataset.select({timer_index, min}, {1, max - min}).read(buffer); | ^~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:559:42: warning: narrowing conversion of 'min' from 'const long long unsigned int' to 'unsigned int' [-Wnarrowing] /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:559:56: warning: narrowing conversion of '(((long long unsigned int)max) - ((long long unsigned int)min))' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 559 | dataset.select({timer_index, min}, {1, max - min}).read(buffer); | ~~~~^~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:559:56: warning: narrowing conversion of '(((long long unsigned int)max) - ((long long unsigned int)min))' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp: In instantiation of 'bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const [with KeyType = long long unsigned int]': /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:587:16: required from here /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:427:38: warning: narrowing conversion of '(long long unsigned int)min' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 427 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); | ^~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:427:38: warning: narrowing conversion of 'min' from 'const long long unsigned int' to 'unsigned int' [-Wnarrowing] /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:427:49: warning: narrowing conversion of '(((long long unsigned int)max) - ((long long unsigned int)min))' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 427 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); | ~~~~^~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:427:49: warning: narrowing conversion of '(((long long unsigned int)max) - ((long long unsigned int)min))' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:450:60: warning: narrowing conversion of 'result.bbp::sonata::ReportReader::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index))).std::pair::first' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 450 | dataset_elem_ids.select({result.node_ranges[index].first}, {1}).read(element_ids); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:450:60: warning: narrowing conversion of 'result.bbp::sonata::ReportReader::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index))).std::pair::first' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp: In instantiation of 'bbp::sonata::DataFrame bbp::sonata::ReportReader::Population::get(const std::optional&, const std::optional&, const std::optional&, const std::optional&, const std::optional&) const [with KeyType = std::array]': /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:588:16: required from here /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:559:42: warning: narrowing conversion of '(long long unsigned int)min' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 559 | dataset.select({timer_index, min}, {1, max - min}).read(buffer); | ^~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:559:42: warning: narrowing conversion of 'min' from 'const long long unsigned int' to 'unsigned int' [-Wnarrowing] /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:559:56: warning: narrowing conversion of '(((long long unsigned int)max) - ((long long unsigned int)min))' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 559 | dataset.select({timer_index, min}, {1, max - min}).read(buffer); | ~~~~^~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:559:56: warning: narrowing conversion of '(((long long unsigned int)max) - ((long long unsigned int)min))' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp: In instantiation of 'bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const [with KeyType = std::array]': /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:588:16: required from here /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:427:38: warning: narrowing conversion of '(long long unsigned int)min' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 427 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); | ^~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:427:38: warning: narrowing conversion of 'min' from 'const long long unsigned int' to 'unsigned int' [-Wnarrowing] /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:427:49: warning: narrowing conversion of '(((long long unsigned int)max) - ((long long unsigned int)min))' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 427 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); | ~~~~^~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:427:49: warning: narrowing conversion of '(((long long unsigned int)max) - ((long long unsigned int)min))' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:450:60: warning: narrowing conversion of 'result.bbp::sonata::ReportReader >::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index))).std::pair::first' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 450 | dataset_elem_ids.select({result.node_ranges[index].first}, {1}).read(element_ids); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:450:60: warning: narrowing conversion of 'result.bbp::sonata::ReportReader >::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index))).std::pair::first' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] [ 52%] Building CXX object CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -D_FILE_OFFSET_BITS=64 -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o -MF CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp In file included from /usr/include/c++/13/bits/stl_tree.h:63, from /usr/include/c++/13/map:62, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/report_reader.h:3, from /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:1: In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3317:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp: In instantiation of 'bbp::sonata::DataFrame bbp::sonata::ReportReader::Population::get(const std::optional&, const std::optional&, const std::optional&, const std::optional&, const std::optional&) const [with KeyType = long long unsigned int]': /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:587:16: required from here /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:559:42: warning: narrowing conversion of '(long long unsigned int)min' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 559 | dataset.select({timer_index, min}, {1, max - min}).read(buffer); | ^~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:559:42: warning: narrowing conversion of 'min' from 'const long long unsigned int' to 'unsigned int' [-Wnarrowing] /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:559:56: warning: narrowing conversion of '(((long long unsigned int)max) - ((long long unsigned int)min))' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 559 | dataset.select({timer_index, min}, {1, max - min}).read(buffer); | ~~~~^~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:559:56: warning: narrowing conversion of '(((long long unsigned int)max) - ((long long unsigned int)min))' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp: In instantiation of 'bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const [with KeyType = long long unsigned int]': /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:587:16: required from here /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:427:38: warning: narrowing conversion of '(long long unsigned int)min' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 427 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); | ^~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:427:38: warning: narrowing conversion of 'min' from 'const long long unsigned int' to 'unsigned int' [-Wnarrowing] /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:427:49: warning: narrowing conversion of '(((long long unsigned int)max) - ((long long unsigned int)min))' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 427 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); | ~~~~^~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:427:49: warning: narrowing conversion of '(((long long unsigned int)max) - ((long long unsigned int)min))' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:450:60: warning: narrowing conversion of 'result.bbp::sonata::ReportReader::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index))).std::pair::first' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 450 | dataset_elem_ids.select({result.node_ranges[index].first}, {1}).read(element_ids); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:450:60: warning: narrowing conversion of 'result.bbp::sonata::ReportReader::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index))).std::pair::first' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp: In instantiation of 'bbp::sonata::DataFrame bbp::sonata::ReportReader::Population::get(const std::optional&, const std::optional&, const std::optional&, const std::optional&, const std::optional&) const [with KeyType = std::array]': /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:588:16: required from here /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:559:42: warning: narrowing conversion of '(long long unsigned int)min' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 559 | dataset.select({timer_index, min}, {1, max - min}).read(buffer); | ^~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:559:42: warning: narrowing conversion of 'min' from 'const long long unsigned int' to 'unsigned int' [-Wnarrowing] /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:559:56: warning: narrowing conversion of '(((long long unsigned int)max) - ((long long unsigned int)min))' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 559 | dataset.select({timer_index, min}, {1, max - min}).read(buffer); | ~~~~^~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:559:56: warning: narrowing conversion of '(((long long unsigned int)max) - ((long long unsigned int)min))' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp: In instantiation of 'bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const [with KeyType = std::array]': /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:588:16: required from here /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:427:38: warning: narrowing conversion of '(long long unsigned int)min' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 427 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); | ^~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:427:38: warning: narrowing conversion of 'min' from 'const long long unsigned int' to 'unsigned int' [-Wnarrowing] /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:427:49: warning: narrowing conversion of '(((long long unsigned int)max) - ((long long unsigned int)min))' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 427 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); | ~~~~^~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:427:49: warning: narrowing conversion of '(((long long unsigned int)max) - ((long long unsigned int)min))' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:450:60: warning: narrowing conversion of 'result.bbp::sonata::ReportReader >::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index))).std::pair::first' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] 450 | dataset_elem_ids.select({result.node_ranges[index].first}, {1}).read(element_ids); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:450:60: warning: narrowing conversion of 'result.bbp::sonata::ReportReader >::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index))).std::pair::first' from 'long long unsigned int' to 'unsigned int' [-Wnarrowing] In file included from /usr/include/c++/13/bits/stl_tree.h:63, from /usr/include/c++/13/map:62, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/report_reader.h:3, from /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:1: In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::bigint::assign_pow10(int)' at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*', inlined from 'std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'fmt::v10::basic_memory_buffer >::grow(unsigned int)' at /usr/include/fmt/format.h:952:28, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:927:39, inlined from 'fmt::v10::detail::buffer::try_reserve(unsigned int)' at /usr/include/fmt/core.h:926:24, inlined from 'fmt::v10::detail::buffer::try_resize(unsigned int)' at /usr/include/fmt/core.h:918:16, inlined from 'fmt::v10::basic_memory_buffer >::resize(unsigned int)' at /usr/include/fmt/format.h:1023:63, inlined from 'fmt::v10::detail::bigint::assign(unsigned long long)void' at /usr/include/fmt/format.h:3096:19, inlined from 'fmt::v10::detail::bigint::operator=(int)void' at /usr/include/fmt/format.h:3117:11, inlined from 'fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&)' at /usr/include/fmt/format.h:3317:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/sonata_static.dir/src/utils.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/utils.cpp.o -MF CMakeFiles/sonata_static.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_static.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/utils.cpp [ 58%] Building CXX object CMakeFiles/sonata_static.dir/src/version.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/version.cpp.o -MF CMakeFiles/sonata_static.dir/src/version.cpp.o.d -o CMakeFiles/sonata_static.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/src/version.cpp [ 61%] Linking CXX static library libsonata.a /usr/bin/cmake -P CMakeFiles/sonata_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsonata.a CMakeFiles/sonata_static.dir/src/common.cpp.o CMakeFiles/sonata_static.dir/src/config.cpp.o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o CMakeFiles/sonata_static.dir/src/edges.cpp.o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o CMakeFiles/sonata_static.dir/src/nodes.cpp.o CMakeFiles/sonata_static.dir/src/population.cpp.o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o CMakeFiles/sonata_static.dir/src/utils.cpp.o CMakeFiles/sonata_static.dir/src/version.cpp.o /usr/bin/ranlib libsonata.a gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [ 61%] Built target sonata_static [ 64%] Building CXX object CMakeFiles/sonata_shared.dir/src/utils.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -D_FILE_OFFSET_BITS=64 -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/utils.cpp.o -MF CMakeFiles/sonata_shared.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/utils.cpp [ 67%] Building CXX object CMakeFiles/sonata_shared.dir/src/version.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -D_FILE_OFFSET_BITS=64 -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/version.cpp.o -MF CMakeFiles/sonata_shared.dir/src/version.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/src/version.cpp /usr/bin/gmake -f python/CMakeFiles/sonata_python.dir/build.make python/CMakeFiles/sonata_python.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23/python /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/python /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/python/CMakeFiles/sonata_python.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f python/CMakeFiles/sonata_python.dir/build.make python/CMakeFiles/sonata_python.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [ 70%] Building CXX object python/CMakeFiles/sonata_python.dir/bindings.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/python && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -D_FILE_OFFSET_BITS=64 -Dsonata_python_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT python/CMakeFiles/sonata_python.dir/bindings.cpp.o -MF CMakeFiles/sonata_python.dir/bindings.cpp.o.d -o CMakeFiles/sonata_python.dir/bindings.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/python/bindings.cpp [ 73%] Linking CXX shared library libsonata.so /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_shared.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsonata.so.0.1 -o libsonata.so.0.1.23 CMakeFiles/sonata_shared.dir/src/common.cpp.o CMakeFiles/sonata_shared.dir/src/config.cpp.o CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o CMakeFiles/sonata_shared.dir/src/edges.cpp.o CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o CMakeFiles/sonata_shared.dir/src/nodes.cpp.o CMakeFiles/sonata_shared.dir/src/population.cpp.o CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o CMakeFiles/sonata_shared.dir/src/utils.cpp.o CMakeFiles/sonata_shared.dir/src/version.cpp.o /usr/lib/libhdf5.so /builddir/build/BUILD/libsonata-0.1.23/python/bindings.cpp: In lambda function: /builddir/build/BUILD/libsonata-0.1.23/python/bindings.cpp:424:39: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'pybind11::ssize_t' {aka 'int'} [-Wsign-compare] 424 | for (size_t i = 0; i < raw.shape(0); ++i) { | ~~^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/edges.h:13, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/config.h:20, from /builddir/build/BUILD/libsonata-0.1.23/python/bindings.cpp:6: /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/population.h: In instantiation of 'static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = const long long int*]': /builddir/build/BUILD/libsonata-0.1.23/python/bindings.cpp:430:46: required from here /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/population.h:77:15: warning: comparison of integer expressions of different signedness: 'const long long int' and 'long long unsigned int' [-Wsign-compare] 77 | if (v == range.second) { | ~~^~~~~~~~~~~~~~~ [ 76%] Linking CXX shared module _libsonata.cpython-312-i386-linux-gnu.so cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_python.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o _libsonata.cpython-312-i386-linux-gnu.so CMakeFiles/sonata_python.dir/bindings.cpp.o ../libsonata.a /usr/lib/libhdf5.so /usr/bin/cmake -E cmake_symlink_library libsonata.so.0.1.23 libsonata.so.0.1 libsonata.so gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [ 76%] Built target sonata_shared /usr/bin/gmake -f tests/CMakeFiles/unittests.dir/build.make tests/CMakeFiles/unittests.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23/tests /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests/CMakeFiles/unittests.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f tests/CMakeFiles/unittests.dir/build.make tests/CMakeFiles/unittests.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [ 79%] Building CXX object tests/CMakeFiles/unittests.dir/main.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/main.cpp.o -MF CMakeFiles/unittests.dir/main.cpp.o.d -o CMakeFiles/unittests.dir/main.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/main.cpp [ 82%] Building CXX object tests/CMakeFiles/unittests.dir/test_config.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_config.cpp.o -MF CMakeFiles/unittests.dir/test_config.cpp.o.d -o CMakeFiles/unittests.dir/test_config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/test_config.cpp cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/python && /usr/bin/strip /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/python/_libsonata.cpython-312-i386-linux-gnu.so gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [ 82%] Built target sonata_python [ 85%] Building CXX object tests/CMakeFiles/unittests.dir/test_edges.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_edges.cpp.o -MF CMakeFiles/unittests.dir/test_edges.cpp.o.d -o CMakeFiles/unittests.dir/test_edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/test_edges.cpp [ 88%] Building CXX object tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o -MF CMakeFiles/unittests.dir/test_node_sets.cpp.o.d -o CMakeFiles/unittests.dir/test_node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/test_node_sets.cpp [ 91%] Building CXX object tests/CMakeFiles/unittests.dir/test_nodes.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_nodes.cpp.o -MF CMakeFiles/unittests.dir/test_nodes.cpp.o.d -o CMakeFiles/unittests.dir/test_nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/test_nodes.cpp [ 94%] Building CXX object tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o -MF CMakeFiles/unittests.dir/test_report_reader.cpp.o.d -o CMakeFiles/unittests.dir/test_report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/test_report_reader.cpp [ 97%] Building CXX object tests/CMakeFiles/unittests.dir/test_selection.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -D_FILE_OFFSET_BITS=64 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_selection.cpp.o -MF CMakeFiles/unittests.dir/test_selection.cpp.o.d -o CMakeFiles/unittests.dir/test_selection.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/test_selection.cpp In file included from /builddir/build/BUILD/libsonata-0.1.23/tests/test_report_reader.cpp:1: /builddir/build/BUILD/libsonata-0.1.23/tests/test_report_reader.cpp: In function 'void testTimes(const std::vector&, double, double, int)': /builddir/build/BUILD/libsonata-0.1.23/tests/test_report_reader.cpp:8:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 8 | REQUIRE(size == vec.size()); | ~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/libsonata-0.1.23/tests/test_report_reader.cpp:9:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 9 | for (int i = 0; i < vec.size(); ++i) { | ~~^~~~~~~~~~~~ [100%] Linking CXX executable unittests cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unittests.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/unittests.dir/main.cpp.o CMakeFiles/unittests.dir/test_config.cpp.o CMakeFiles/unittests.dir/test_edges.cpp.o CMakeFiles/unittests.dir/test_node_sets.cpp.o CMakeFiles/unittests.dir/test_nodes.cpp.o CMakeFiles/unittests.dir/test_report_reader.cpp.o CMakeFiles/unittests.dir/test_selection.cpp.o -o unittests -Wl,-rpath,/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build ../libsonata.so.0.1.23 /usr/lib/libhdf5.so cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/cmake -D TEST_TARGET=unittests -D TEST_EXECUTABLE=/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests/unittests -D TEST_EXECUTOR= -D TEST_WORKING_DIR=/builddir/build/BUILD/libsonata-0.1.23/tests -D TEST_SPEC= -D TEST_EXTRA_ARGS= -D TEST_PROPERTIES= -D TEST_PREFIX= -D TEST_SUFFIX= -D TEST_LIST=unittests_TESTS -D TEST_REPORTER= -D TEST_OUTPUT_DIR= -D TEST_OUTPUT_PREFIX= -D TEST_OUTPUT_SUFFIX= -D CTEST_FILE=/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests/unittests_tests-b12d07c.cmake -P /usr/lib/cmake/Catch2/CatchAddTests.cmake gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [100%] Built target unittests gmake[1]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/CMakeFiles 0 + export SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + cp -a README.rst redhat-linux-build + cp -a setup.py redhat-linux-build + cp -a pyproject.toml redhat-linux-build + cp -a COPYING.LESSER redhat-linux-build + cp -a MANIFEST.in redhat-linux-build + mkdir -p redhat-linux-build/python/libsonata/ + cp -a python/libsonata/__init__.py redhat-linux-build/python/libsonata + pushd redhat-linux-build ~/build/BUILD/libsonata-0.1.23/redhat-linux-build ~/build/BUILD/libsonata-0.1.23 + mkdir -p /builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/libsonata-0.1.23/pyproject-wheeldir Processing /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-8t1ytglx/libsonata.egg-info writing /builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-8t1ytglx/libsonata.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-8t1ytglx/libsonata.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-8t1ytglx/libsonata.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-8t1ytglx/libsonata.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-8t1ytglx/libsonata.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-8t1ytglx/libsonata.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'include' warning: no files found matching 'CMakeLists.txt' warning: no files found matching 'extlib/CMakeLists.txt' warning: no files found matching 'extlib/nlohmann/json.hpp' warning: no files found matching '*' under directory 'extlib/fmt/include' warning: no files found matching '*' under directory 'extlib/fmt/src' warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake' warning: no files found matching 'extlib/fmt/CMakeLists.txt' warning: no files found matching 'extlib/fmt/*.rst' warning: no files found matching '*' under directory 'extlib/HighFive/include' warning: no files found matching 'extlib/HighFive/CMakeLists.txt' warning: no files found matching 'extlib/HighFive/LICENSE' warning: no files found matching 'extlib/filesystem.hpp' warning: no files found matching '*' under directory 'python/pybind11/include' warning: no files found matching '*.cmake' under directory 'python/pybind11/tools' warning: no files found matching 'python/pybind11/CMakeLists.txt' warning: no files found matching 'python/pybind11/LICENSE' adding license file 'COPYING.LESSER' writing manifest file '/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-8t1ytglx/libsonata.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-8t1ytglx/libsonata-0.1.23.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: libsonata Building wheel for libsonata (pyproject.toml): started Running command Building wheel for libsonata (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib.linux-i686-cpython-312 creating build/lib.linux-i686-cpython-312/libsonata copying python/libsonata/__init__.py -> build/lib.linux-i686-cpython-312/libsonata running build_ext installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686 creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/libsonata copying build/lib.linux-i686-cpython-312/libsonata/__init__.py -> build/bdist.linux-i686/wheel/libsonata running install_egg_info running egg_info creating python/libsonata.egg-info writing python/libsonata.egg-info/PKG-INFO writing dependency_links to python/libsonata.egg-info/dependency_links.txt writing requirements to python/libsonata.egg-info/requires.txt writing top-level names to python/libsonata.egg-info/top_level.txt writing manifest file 'python/libsonata.egg-info/SOURCES.txt' reading manifest file 'python/libsonata.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'include' warning: no files found matching 'CMakeLists.txt' warning: no files found matching 'extlib/CMakeLists.txt' warning: no files found matching 'extlib/nlohmann/json.hpp' warning: no files found matching '*' under directory 'extlib/fmt/include' warning: no files found matching '*' under directory 'extlib/fmt/src' warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake' warning: no files found matching 'extlib/fmt/CMakeLists.txt' warning: no files found matching 'extlib/fmt/*.rst' warning: no files found matching '*' under directory 'extlib/HighFive/include' warning: no files found matching 'extlib/HighFive/CMakeLists.txt' warning: no files found matching 'extlib/HighFive/LICENSE' warning: no files found matching 'extlib/filesystem.hpp' warning: no files found matching '*' under directory 'python/pybind11/include' warning: no files found matching '*.cmake' under directory 'python/pybind11/tools' warning: no files found matching 'python/pybind11/CMakeLists.txt' warning: no files found matching 'python/pybind11/LICENSE' adding license file 'COPYING.LESSER' writing manifest file 'python/libsonata.egg-info/SOURCES.txt' Copying python/libsonata.egg-info to build/bdist.linux-i686/wheel/libsonata-0.1.23-py3.12.egg-info running install_scripts creating build/bdist.linux-i686/wheel/libsonata-0.1.23.dist-info/WHEEL creating '/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-wheel-kpytvm7d/.tmp-1o5r03g4/libsonata-0.1.23-cp312-cp312-linux_i686.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'libsonata/__init__.py' adding 'libsonata-0.1.23.dist-info/COPYING.LESSER' adding 'libsonata-0.1.23.dist-info/METADATA' adding 'libsonata-0.1.23.dist-info/WHEEL' adding 'libsonata-0.1.23.dist-info/top_level.txt' adding 'libsonata-0.1.23.dist-info/RECORD' removing build/bdist.linux-i686/wheel Building wheel for libsonata (pyproject.toml): finished with status 'done' Created wheel for libsonata: filename=libsonata-0.1.23-cp312-cp312-linux_i686.whl size=8553 sha256=3e7a91bd71c971e43dc15043d1e9dd993c235b7c2d5ac23b64b889e7b0924262 Stored in directory: /builddir/.cache/pip/wheels/a1/69/45/84665eb6941ba852c46a3b363d91189334ac3fc336fc2813bf Successfully built libsonata + popd + pushd tests/data ~/build/BUILD/libsonata-0.1.23 ~/build/BUILD/libsonata-0.1.23/tests/data ~/build/BUILD/libsonata-0.1.23 + /usr/bin/python3 generate.py + popd + mkdir -p redhat-linux-build/tests ~/build/BUILD/libsonata-0.1.23 + cp -a tests/data redhat-linux-build/tests + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.5INMOP + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386 ++ dirname /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.23 + DESTDIR=/builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386 + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "" -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/lib/libsonata.so.0.1.23 -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/lib/libsonata.so.0.1 -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/lib/libsonata.so -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/lib/libsonata.a -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/include/bbp -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/include/bbp/sonata -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/include/bbp/sonata/variant.hpp -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/include/bbp/sonata/report_reader.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/include/bbp/sonata/population.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/include/bbp/sonata/optional.hpp -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/include/bbp/sonata/nodes.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/include/bbp/sonata/node_sets.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/include/bbp/sonata/edges.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/include/bbp/sonata/config.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/include/bbp/sonata/common.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/share/sonata/CMake/sonata-config.cmake -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/share/sonata/CMake/sonata-targets.cmake -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/share/sonata/CMake/sonata-targets-noconfig.cmake + rm -rf /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386//usr/lib/libsonata.a + install -p -m 0655 -D -t /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386//usr/lib/python3.12/site-packages/libsonata/ redhat-linux-build/python/_libsonata.cpython-312-i386-linux-gnu.so + export SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + pushd redhat-linux-build ~/build/BUILD/libsonata-0.1.23/redhat-linux-build ~/build/BUILD/libsonata-0.1.23 ++ ls /builddir/build/BUILD/libsonata-0.1.23/pyproject-wheeldir/libsonata-0.1.23-cp312-cp312-linux_i686.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ xargs basename --multiple + specifier=libsonata==0.1.23 + TMPDIR=/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/libsonata-0.1.23/pyproject-wheeldir libsonata==0.1.23 Using pip 23.2.1 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/libsonata-0.1.23/pyproject-wheeldir Processing /builddir/build/BUILD/libsonata-0.1.23/pyproject-wheeldir/libsonata-0.1.23-cp312-cp312-linux_i686.whl Installing collected packages: libsonata Successfully installed libsonata-0.1.23 + '[' -d /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/bin ']' + rm -f /builddir/build/BUILD/libsonata-0.1.23-1.fc40.i386-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/lib/python3.12/site-packages ']' + site_dirs+=("/usr/lib/python3.12/site-packages") + '[' /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/lib/python3.12/site-packages '!=' /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/lib/python3.12/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.12/site-packages/libsonata-0.1.23.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/lib/python3.12/site-packages/libsonata-0.1.23.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386 --record /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/lib/python3.12/site-packages/libsonata-0.1.23.dist-info/RECORD --output /builddir/build/BUILD/libsonata-0.1.23-1.fc40.i386-pyproject-record + rm -fv /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/lib/python3.12/site-packages/libsonata-0.1.23.dist-info/RECORD removed '/builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/lib/python3.12/site-packages/libsonata-0.1.23.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/lib/python3.12/site-packages/libsonata-0.1.23.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/lib/python3.12/site-packages/libsonata-0.1.23.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/libsonata-0.1.23-1.fc40.i386-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=2 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/libsonata-0.1.23-1.fc40.i386-pyproject-files --output-modules /builddir/build/BUILD/libsonata-0.1.23-1.fc40.i386-pyproject-modules --buildroot /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/libsonata-0.1.23-1.fc40.i386-pyproject-record --prefix /usr libsonata + popd ~/build/BUILD/libsonata-0.1.23 + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.1.23-1.fc40 --unique-debug-suffix -0.1.23-1.fc40.i386 --unique-debug-src-base libsonata-0.1.23-1.fc40.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/libsonata-0.1.23 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/libsonata-0.1.23-1.fc40.i386 1082 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/lib/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.JjtAOE + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.23 + /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j2 tests Internal ctest changing into directory: /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build Test project /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build Start 1: Selection Start 2: SpikeReader 1/30 Test #1: Selection ....................................... Passed 0.00 sec Start 3: SomaReportReader limits 2/30 Test #2: SpikeReader ..................................... Passed 0.01 sec Start 4: SomaReportReader 3/30 Test #3: SomaReportReader limits ......................... Passed 0.01 sec Start 5: ElementReportReader limits 4/30 Test #4: SomaReportReader ................................ Passed 0.01 sec Start 6: ElementReportReader 5/30 Test #5: ElementReportReader limits ...................... Passed 0.01 sec Start 7: NodePopulation 6/30 Test #6: ElementReportReader ............................. Passed 0.01 sec Start 8: NodePopulationMove 7/30 Test #8: NodePopulationMove .............................. Passed 0.00 sec Start 9: NodePopulationSelectAll 8/30 Test #7: NodePopulation .................................. Passed 0.01 sec Start 10: NodePopulationmatchAttributeValues 9/30 Test #9: NodePopulationSelectAll ......................... Passed 0.01 sec Start 11: NodePopulationmatchAttributeValues - int8_t 10/30 Test #10: NodePopulationmatchAttributeValues .............. Passed 0.01 sec Start 12: NodePopulationmatchAttributeValues - uint8_t 11/30 Test #11: NodePopulationmatchAttributeValues - int8_t ..... Passed 0.01 sec Start 13: NodePopulationmatchAttributeValues - int16_t 12/30 Test #13: NodePopulationmatchAttributeValues - int16_t .... Passed 0.01 sec Start 14: NodePopulationmatchAttributeValues - uint16_t 13/30 Test #12: NodePopulationmatchAttributeValues - uint8_t .... Passed 0.01 sec Start 15: NodePopulationmatchAttributeValues - int32_t 14/30 Test #15: NodePopulationmatchAttributeValues - int32_t .... Passed 0.01 sec Start 16: NodePopulationmatchAttributeValues - uint32_t 15/30 Test #14: NodePopulationmatchAttributeValues - uint16_t ... Passed 0.01 sec Start 17: NodePopulationmatchAttributeValues - int64_t 16/30 Test #17: NodePopulationmatchAttributeValues - int64_t .... Passed 0.00 sec Start 18: NodePopulationmatchAttributeValues - uint64_t 17/30 Test #16: NodePopulationmatchAttributeValues - uint32_t ... Passed 0.01 sec Start 19: NodeSetParse 18/30 Test #19: NodeSetParse .................................... Passed 0.00 sec Start 20: NodeSetBasic 19/30 Test #18: NodePopulationmatchAttributeValues - uint64_t ... Passed 0.01 sec Start 21: NodeSetCompound 20/30 Test #20: NodeSetBasic .................................... Passed 0.01 sec Start 22: NodeSet 21/30 Test #21: NodeSetCompound ................................. Passed 0.01 sec Start 23: EdgePopulation 22/30 Test #22: NodeSet ......................................... Passed 0.00 sec Start 24: EdgePopulationSelectAll 23/30 Test #24: EdgePopulationSelectAll ......................... Passed 0.00 sec Start 25: EdgePopulation::writeIndices 24/30 Test #23: EdgePopulation .................................. Passed 0.01 sec Start 26: EdgeStorage 25/30 Test #25: EdgePopulation::writeIndices .................... Passed 0.01 sec Start 27: CircuitConfig 26/30 Test #26: EdgeStorage ..................................... Passed 0.01 sec Start 28: SimulationConfig 27/30 Test #27: CircuitConfig ................................... Passed 0.01 sec Start 29: SONATA 28/30 Test #29: SONATA .......................................... Passed 0.00 sec Start 30: unittests 29/30 Test #28: SimulationConfig ................................ Passed 0.01 sec 30/30 Test #30: unittests ....................................... Passed 0.04 sec 100% tests passed, 0 tests failed out of 30 Total Test time (real) = 0.15 sec + pushd python/tests ~/build/BUILD/libsonata-0.1.23/python/tests ~/build/BUILD/libsonata-0.1.23 + export PYTHONPATH=/builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386//usr/lib/python3.12/site-packages/ + PYTHONPATH=/builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386//usr/lib/python3.12/site-packages/ + /usr/bin/python3 -m unittest -v test_astrocyte_properties (test_config.TestCircuitConfig.test_astrocyte_properties) ... ok test_basic (test_config.TestCircuitConfig.test_basic) ... ok test_biophysical_properties_raises (test_config.TestCircuitConfig.test_biophysical_properties_raises) ... ok test_duplicate_population (test_config.TestCircuitConfig.test_duplicate_population) ... ok test_endfeet_properties (test_config.TestCircuitConfig.test_endfeet_properties) ... ok test_expanded_json (test_config.TestCircuitConfig.test_expanded_json) ... ok test_get_population_properties (test_config.TestCircuitConfig.test_get_population_properties) ... ok test_partial (test_config.TestCircuitConfig.test_partial) ... ok test_shadowing_morphs (test_config.TestCircuitConfig.test_shadowing_morphs) ... ok test_spatial_directories (test_config.TestCircuitConfig.test_spatial_directories) ... ok test_vasculature_properties (test_config.TestCircuitConfig.test_vasculature_properties) ... ok test_basic (test_config.TestSimulationConfig.test_basic) ... ok test_empty_connection_overrides (test_config.TestSimulationConfig.test_empty_connection_overrides) ... ok test_expanded_json (test_config.TestSimulationConfig.test_expanded_json) ... ok test_run (test_config.TestSimulationConfig.test_run) ... ok test_simulation_config_failures (test_config.TestSimulationConfig.test_simulation_config_failures) ... ok test_BasicScalarAnded (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarAnded) ... ok test_BasicScalarEnum (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarEnum) ... ok test_BasicScalarInt (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarInt) ... ok test_BasicScalarNodeId (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarNodeId) ... ok test_BasicScalarPopulation (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarPopulation) ... ok test_BasicScalarString (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarString) ... ok test_NodeSetCompound (test_nodesets.TestNodePopulationNodeSet.test_NodeSetCompound) ... ok test_NodeSetEmptyArray (test_nodesets.TestNodePopulationNodeSet.test_NodeSetEmptyArray) ... ok test_NodeSet_toJSON (test_nodesets.TestNodePopulationNodeSet.test_NodeSet_toJSON) ... ok test_library_datatype (test_nodesets.TestNodePopulationNodeSet.test_library_datatype) ... ok test_BasicScalarFailFloat (test_nodesets.TestNodeSetFailure.test_BasicScalarFailFloat) ... ok test_BasicScalarFailNegativeNodeIds (test_nodesets.TestNodeSetFailure.test_BasicScalarFailNegativeNodeIds) ... ok test_BasicScalarFailPopulation (test_nodesets.TestNodeSetFailure.test_BasicScalarFailPopulation) ... ok test_CorrectStructure (test_nodesets.TestNodeSetFailure.test_CorrectStructure) ... ok test_FailCompoundWithInt (test_nodesets.TestNodeSetFailure.test_FailCompoundWithInt) ... ok test_FaileRecursiveCompound (test_nodesets.TestNodeSetFailure.test_FaileRecursiveCompound) ... ok test_MissingBasic (test_nodesets.TestNodeSetFailure.test_MissingBasic) ... ok test_MissingFile (test_nodesets.TestNodeSetFailure.test_MissingFile) ... ok test_afferent_edges (test_population.TestEdgePopulation.test_afferent_edges) ... ok test_connecting_edges (test_population.TestEdgePopulation.test_connecting_edges) ... ok test_efferent_edges (test_population.TestEdgePopulation.test_efferent_edges) ... ok test_library_enumeration (test_population.TestEdgePopulation.test_library_enumeration) ... ok test_select_all (test_population.TestEdgePopulation.test_select_all) ... ok test_source (test_population.TestEdgePopulation.test_source) ... ok test_source_nodes (test_population.TestEdgePopulation.test_source_nodes) ... ok test_target (test_population.TestEdgePopulation.test_target) ... ok test_target_nodes (test_population.TestEdgePopulation.test_target_nodes) ... ok test_path_ctor (test_population.TestMisc.test_path_ctor) ... ok test_attribute_names (test_population.TestNodePopulation.test_attribute_names) ... ok test_enumeration_names (test_population.TestNodePopulation.test_enumeration_names) ... ok test_enumeration_values (test_population.TestNodePopulation.test_enumeration_values) ... ok test_get_attribute (test_population.TestNodePopulation.test_get_attribute) ... ok test_get_dynamics_attribute (test_population.TestNodePopulation.test_get_dynamics_attribute) ... ok test_match_values (test_population.TestNodePopulation.test_match_values) ... ok test_name (test_population.TestNodePopulation.test_name) ... ok test_select_all (test_population.TestNodePopulation.test_select_all) ... ok test_size (test_population.TestNodePopulation.test_size) ... ok test_basic (test_population.TestSelection.test_basic) ... ok test_comparison (test_population.TestSelection.test_comparison) ... ok test_dtypes (test_population.TestSelection.test_dtypes) ... ok test_from_ranges (test_population.TestSelection.test_from_ranges) ... ok test_from_values (test_population.TestSelection.test_from_values) ... ok test_from_values_empty (test_population.TestSelection.test_from_values_empty) ... ok test_union_intersection (test_population.TestSelection.test_union_intersection) ... ok test_block_gap_limit (test_reports.TestElementReportReader.test_block_gap_limit) ... ok test_get_all_population (test_reports.TestElementReportReader.test_get_all_population) ... ok test_get_inexistant_population (test_reports.TestElementReportReader.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0: #000: ../../src/H5G.c line 510 in H5Gopen2(): unable to open group major: Symbol table minor: Can't open object #001: ../../src/H5VLcallback.c line 4187 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #002: ../../src/H5VLcallback.c line 4154 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLnative_group.c line 123 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #004: ../../src/H5Gint.c line 270 in H5G__open_name(): group not found major: Symbol table minor: Object not found #005: ../../src/H5Gloc.c line 442 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #006: ../../src/H5Gtraverse.c line 837 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 613 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #008: ../../src/H5Gloc.c line 399 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_node_id_element_id_mapping (test_reports.TestElementReportReader.test_get_node_id_element_id_mapping) ... ok test_get_node_ids (test_reports.TestElementReportReader.test_get_node_ids) ... ok test_get_population (test_reports.TestElementReportReader.test_get_population) ... ok test_get_reports_from_population (test_reports.TestElementReportReader.test_get_reports_from_population) ... ok test_block_gap_limit (test_reports.TestSomaReportReader.test_block_gap_limit) ... ok test_get_all_population (test_reports.TestSomaReportReader.test_get_all_population) ... ok test_get_inexistant_population (test_reports.TestSomaReportReader.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0: #000: ../../src/H5G.c line 510 in H5Gopen2(): unable to open group major: Symbol table minor: Can't open object #001: ../../src/H5VLcallback.c line 4187 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #002: ../../src/H5VLcallback.c line 4154 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLnative_group.c line 123 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #004: ../../src/H5Gint.c line 270 in H5G__open_name(): group not found major: Symbol table minor: Object not found #005: ../../src/H5Gloc.c line 442 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #006: ../../src/H5Gtraverse.c line 837 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 613 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #008: ../../src/H5Gloc.c line 399 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_node_id_element_id_mapping (test_reports.TestSomaReportReader.test_get_node_id_element_id_mapping) ... ok test_get_population (test_reports.TestSomaReportReader.test_get_population) ... ok test_get_reports_from_population (test_reports.TestSomaReportReader.test_get_reports_from_population) ... ok test_getTimes_from_population (test_reports.TestSpikeReader.test_getTimes_from_population) ... ok test_get_all_populations (test_reports.TestSpikeReader.test_get_all_populations) ... ok test_get_inexistant_population (test_reports.TestSpikeReader.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0: #000: ../../src/H5G.c line 510 in H5Gopen2(): unable to open group major: Symbol table minor: Can't open object #001: ../../src/H5VLcallback.c line 4187 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #002: ../../src/H5VLcallback.c line 4154 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLnative_group.c line 123 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #004: ../../src/H5Gint.c line 270 in H5G__open_name(): group not found major: Symbol table minor: Object not found #005: ../../src/H5Gloc.c line 442 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #006: ../../src/H5Gtraverse.c line 837 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 613 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #008: ../../src/H5Gloc.c line 399 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_population (test_reports.TestSpikeReader.test_get_population) ... ok test_get_spikes_from_population (test_reports.TestSpikeReader.test_get_spikes_from_population) ... ok ---------------------------------------------------------------------- Ran 78 tests in 0.085s OK + popd ~/build/BUILD/libsonata-0.1.23 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: libsonata-0.1.23-1.fc40.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.IQlHB9 + umask 022 + cd /builddir/build/BUILD + cd libsonata-0.1.23 + DOCDIR=/builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/share/doc/libsonata + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/share/doc/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23/README.rst /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/share/doc/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23/CHANGELOG.md /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/share/doc/libsonata + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.DbvA82 + umask 022 + cd /builddir/build/BUILD + cd libsonata-0.1.23 + LICENSEDIR=/builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/share/licenses/libsonata + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/share/licenses/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23/COPYING.LESSER /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/share/licenses/libsonata + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsonata = 0.1.23-1.fc40 libsonata(x86-32) = 0.1.23-1.fc40 libsonata.so.0.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.32) libc.so.6(GLIBC_2.33) libc.so.6(GLIBC_2.38) libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_3.3.1) libgcc_s.so.1(GLIBC_2.0) libhdf5.so.200 libm.so.6 libm.so.6(GLIBC_2.0) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.5) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.14) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.18) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.26) libstdc++.so.6(GLIBCXX_3.4.29) libstdc++.so.6(GLIBCXX_3.4.30) libstdc++.so.6(GLIBCXX_3.4.32) libstdc++.so.6(GLIBCXX_3.4.9) rtld(GNU_HASH) Processing files: libsonata-devel-0.1.23-1.fc40.i686 Provides: libsonata-devel = 0.1.23-1.fc40 libsonata-devel(x86-32) = 0.1.23-1.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsonata.so.0.1 Processing files: python3-libsonata-0.1.23-1.fc40.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.UafLrG + umask 022 + cd /builddir/build/BUILD + cd libsonata-0.1.23 + DOCDIR=/builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/share/doc/python3-libsonata + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/share/doc/python3-libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23/README.rst /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/share/doc/python3-libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23/CHANGELOG.md /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386/usr/share/doc/python3-libsonata + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-libsonata = 0.1.23-1.fc40 python3-libsonata = 0.1.23-1.fc40 python3-libsonata(x86-32) = 0.1.23-1.fc40 python3.12-libsonata = 0.1.23-1.fc40 python3.12dist(libsonata) = 0.1.23 python3dist(libsonata) = 0.1.23 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux.so.2 ld-linux.so.2(GLIBC_2.3) libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.32) libc.so.6(GLIBC_2.33) libc.so.6(GLIBC_2.38) libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_3.3.1) libgcc_s.so.1(GLIBC_2.0) libhdf5.so.200 libm.so.6 libm.so.6(GLIBC_2.0) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.11) libstdc++.so.6(CXXABI_1.3.13) libstdc++.so.6(CXXABI_1.3.2) libstdc++.so.6(CXXABI_1.3.3) libstdc++.so.6(CXXABI_1.3.5) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.14) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.18) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.26) libstdc++.so.6(GLIBCXX_3.4.29) libstdc++.so.6(GLIBCXX_3.4.30) libstdc++.so.6(GLIBCXX_3.4.32) libstdc++.so.6(GLIBCXX_3.4.9) python(abi) = 3.12 python3.12dist(numpy) >= 1.17.3 rtld(GNU_HASH) Processing files: libsonata-debugsource-0.1.23-1.fc40.i686 Provides: libsonata-debugsource = 0.1.23-1.fc40 libsonata-debugsource(x86-32) = 0.1.23-1.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: libsonata-debuginfo-0.1.23-1.fc40.i686 Provides: debuginfo(build-id) = 9f8ac072473164de4fabf43a9ee1ef11747f0b74 libsonata-debuginfo = 0.1.23-1.fc40 libsonata-debuginfo(x86-32) = 0.1.23-1.fc40 libsonata.so.0.1.23-0.1.23-1.fc40.i386.debug Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsonata-debugsource(x86-32) = 0.1.23-1.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386 Wrote: /builddir/build/RPMS/python3-libsonata-0.1.23-1.fc40.i686.rpm Wrote: /builddir/build/RPMS/libsonata-0.1.23-1.fc40.i686.rpm Wrote: /builddir/build/RPMS/libsonata-debugsource-0.1.23-1.fc40.i686.rpm Wrote: /builddir/build/RPMS/libsonata-devel-0.1.23-1.fc40.i686.rpm Wrote: /builddir/build/RPMS/libsonata-debuginfo-0.1.23-1.fc40.i686.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.M78lxJ + umask 022 + cd /builddir/build/BUILD + cd libsonata-0.1.23 + /usr/bin/rm -rf /builddir/build/BUILDROOT/libsonata-0.1.23-1.fc40.i386 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.cTWlwc + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/libsonata-0.1.23-SPECPARTS + rm -rf libsonata-0.1.23 libsonata-0.1.23.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild libsonata-0.1.23-1.fc40.src.rpm Finish: build phase for libsonata-0.1.23-1.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-i686-1693311891.404284/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-i686-1693311891.404284/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-i686-1693311891.404284/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/libsonata-0.1.23-1.fc40.src.rpm) Config(child) 4 minutes 13 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "libsonata", "epoch": null, "version": "0.1.23", "release": "1.fc40", "arch": "i686" }, { "name": "libsonata-debuginfo", "epoch": null, "version": "0.1.23", "release": "1.fc40", "arch": "i686" }, { "name": "libsonata-debugsource", "epoch": null, "version": "0.1.23", "release": "1.fc40", "arch": "i686" }, { "name": "libsonata", "epoch": null, "version": "0.1.23", "release": "1.fc40", "arch": "src" }, { "name": "python3-libsonata", "epoch": null, "version": "0.1.23", "release": "1.fc40", "arch": "i686" }, { "name": "libsonata-devel", "epoch": null, "version": "0.1.23", "release": "1.fc40", "arch": "i686" } ] } RPMResults finished