Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c159' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6418167-fedora-39-x86_64 --chroot fedora-39-x86_64 Version: 0.69 PID: 5713 Logging PID: 5714 Task: {'appstream': False, 'background': True, 'build_id': 6418167, 'buildroot_pkgs': [], 'chroot': 'fedora-39-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '149eccb4179fd4b0a5f610b367c45da10e5d6144', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-pybind11-2.11.1/libsonata', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'libsonata', 'package_version': '0.1.23-2', 'project_dirname': 'python3-pybind11-2.11.1', 'project_name': 'python3-pybind11-2.11.1', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/python3-pybind11-2.11.1/fedora-39-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/python3-pybind11-2.11.1--https://src.fedoraproject.org/user/music', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/music', 'tags': [], 'task_id': '6418167-fedora-39-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-pybind11-2.11.1/libsonata /var/lib/copr-rpmbuild/workspace/workdir-r1_u4l9z/libsonata --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/python3-pybind11-2.11.1/libsonata', '/var/lib/copr-rpmbuild/workspace/workdir-r1_u4l9z/libsonata', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-r1_u4l9z/libsonata'... Running: git checkout 149eccb4179fd4b0a5f610b367c45da10e5d6144 -- cmd: ['git', 'checkout', '149eccb4179fd4b0a5f610b367c45da10e5d6144', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-r1_u4l9z/libsonata rc: 0 stdout: stderr: Note: switching to '149eccb4179fd4b0a5f610b367c45da10e5d6144'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 149eccb automatic import of libsonata Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-r1_u4l9z/libsonata rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading libsonata-0.1.23.tar.gz INFO: Reading stdout from command: curl --help all /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated INFO: Calling: curl -H Pragma: -o libsonata-0.1.23.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/python3-pybind11-2.11.1/libsonata/libsonata-0.1.23.tar.gz/md5/4a2f0917fd2882f707e2b2e92e40f85b/libsonata-0.1.23.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 624k 100 624k 0 0 6980k 0 --:--:-- --:--:-- --:--:-- 7019k INFO: Reading stdout from command: md5sum libsonata-0.1.23.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-r1_u4l9z/libsonata/libsonata.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-r1_u4l9z/libsonata --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1695135575.351555 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.1.1 starting (python version = 3.11.3, NVR = mock-5.1.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-r1_u4l9z/libsonata/libsonata.spec) Config(fedora-39-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.1.1 INFO: Mock Version: 5.1.1 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-bootstrap-1695135575.351555/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:39 INFO: Pulling image: registry.fedoraproject.org/fedora:39 INFO: Copy content of container registry.fedoraproject.org/fedora:39 to /var/lib/mock/fedora-39-x86_64-bootstrap-1695135575.351555/root INFO: Checking that registry.fedoraproject.org/fedora:39 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:39 with podman image mount INFO: image registry.fedoraproject.org/fedora:39 as /var/lib/containers/storage/overlay/b8fb2bad86b70d32c83e297f4d3776f8cf4b26339e7c9640bd9992ff59df1d43/merged INFO: umounting image registry.fedoraproject.org/fedora:39 (/var/lib/containers/storage/overlay/b8fb2bad86b70d32c83e297f4d3776f8cf4b26339e7c9640bd9992ff59df1d43/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 1.5 MB/s | 195 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 62 MB/s | 70 MB 00:01 fedora 37 MB/s | 90 MB 00:02 updates 1.8 kB/s | 257 B 00:00 Package python3-dnf-4.16.2-2.fc39.noarch is already installed. Dependencies resolved. ========================================================================================================================= Package Arch Version Repository Size ========================================================================================================================= Installing: python3-dnf-plugins-core noarch 4.4.2-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 278 k Upgrading: dnf noarch 4.16.2-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 465 k dnf-data noarch 4.16.2-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k python3-dnf noarch 4.16.2-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 546 k yum noarch 4.16.2-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36 k Installing dependencies: dbus-libs x86_64 1:1.14.10-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 155 k python3-dateutil noarch 1:2.8.2-10.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 344 k python3-dbus x86_64 1.3.2-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146 k python3-distro noarch 1.8.0-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 44 k python3-six noarch 1.16.0-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k python3-systemd x86_64 235-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101 k Transaction Summary ========================================================================================================================= Install 7 Packages Upgrade 4 Packages Total download size: 2.1 M Downloading Packages: (1/11): python3-dateutil-2.8.2-10.fc39.noarch.r 3.1 MB/s | 344 kB 00:00 (2/11): python3-dbus-1.3.2-4.fc39.x86_64.rpm 1.3 MB/s | 146 kB 00:00 (3/11): dbus-libs-1.14.10-1.fc40.x86_64.rpm 1.3 MB/s | 155 kB 00:00 (4/11): python3-distro-1.8.0-6.fc39.noarch.rpm 2.0 MB/s | 44 kB 00:00 (5/11): python3-six-1.16.0-12.fc39.noarch.rpm 1.9 MB/s | 41 kB 00:00 (6/11): python3-dnf-plugins-core-4.4.2-1.fc39.n 8.5 MB/s | 278 kB 00:00 (7/11): python3-systemd-235-5.fc39.x86_64.rpm 4.6 MB/s | 101 kB 00:00 (8/11): dnf-data-4.16.2-4.fc40.noarch.rpm 1.4 MB/s | 39 kB 00:00 (9/11): dnf-4.16.2-4.fc40.noarch.rpm 13 MB/s | 465 kB 00:00 (10/11): yum-4.16.2-4.fc40.noarch.rpm 1.7 MB/s | 36 kB 00:00 (11/11): python3-dnf-4.16.2-4.fc40.noarch.rpm 12 MB/s | 546 kB 00:00 -------------------------------------------------------------------------------- Total 11 MB/s | 2.1 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Upgrading : dnf-data-4.16.2-4.fc40.noarch 1/15 Upgrading : python3-dnf-4.16.2-4.fc40.noarch 2/15 Installing : python3-systemd-235-5.fc39.x86_64 3/15 Installing : python3-six-1.16.0-12.fc39.noarch 4/15 Installing : python3-dateutil-1:2.8.2-10.fc39.noarch 5/15 Installing : python3-distro-1.8.0-6.fc39.noarch 6/15 Installing : dbus-libs-1:1.14.10-1.fc40.x86_64 7/15 Installing : python3-dbus-1.3.2-4.fc39.x86_64 8/15 Upgrading : dnf-4.16.2-4.fc40.noarch 9/15 Running scriptlet: dnf-4.16.2-4.fc40.noarch 9/15 Upgrading : yum-4.16.2-4.fc40.noarch 10/15 Installing : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 11/15 Cleanup : yum-4.16.2-2.fc39.noarch 12/15 Running scriptlet: dnf-4.16.2-2.fc39.noarch 13/15 Cleanup : dnf-4.16.2-2.fc39.noarch 13/15 Running scriptlet: dnf-4.16.2-2.fc39.noarch 13/15 Cleanup : python3-dnf-4.16.2-2.fc39.noarch 14/15 Cleanup : dnf-data-4.16.2-2.fc39.noarch 15/15 Running scriptlet: dnf-data-4.16.2-2.fc39.noarch 15/15 Verifying : dbus-libs-1:1.14.10-1.fc40.x86_64 1/15 Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 2/15 Verifying : python3-dbus-1.3.2-4.fc39.x86_64 3/15 Verifying : python3-distro-1.8.0-6.fc39.noarch 4/15 Verifying : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 5/15 Verifying : python3-six-1.16.0-12.fc39.noarch 6/15 Verifying : python3-systemd-235-5.fc39.x86_64 7/15 Verifying : dnf-4.16.2-4.fc40.noarch 8/15 Verifying : dnf-4.16.2-2.fc39.noarch 9/15 Verifying : dnf-data-4.16.2-4.fc40.noarch 10/15 Verifying : dnf-data-4.16.2-2.fc39.noarch 11/15 Verifying : python3-dnf-4.16.2-4.fc40.noarch 12/15 Verifying : python3-dnf-4.16.2-2.fc39.noarch 13/15 Verifying : yum-4.16.2-4.fc40.noarch 14/15 Verifying : yum-4.16.2-2.fc39.noarch 15/15 Upgraded: dnf-4.16.2-4.fc40.noarch dnf-data-4.16.2-4.fc40.noarch python3-dnf-4.16.2-4.fc40.noarch yum-4.16.2-4.fc40.noarch Installed: dbus-libs-1:1.14.10-1.fc40.x86_64 python3-dateutil-1:2.8.2-10.fc39.noarch python3-dbus-1.3.2-4.fc39.x86_64 python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1695135575.351555/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 1.4 MB/s | 195 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 58 MB/s | 70 MB 00:01 fedora 41 MB/s | 90 MB 00:02 updates 1.4 kB/s | 257 B 00:00 Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing group/module packages: bash x86_64 5.2.15-5.fc39 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 159 k info x86_64 7.0.3-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 182 k patch x86_64 2.7.6-22.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 125 k redhat-rpm-config noarch 266-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 73 k rpm-build x86_64 4.18.99-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 71 k sed x86_64 4.8-14.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 297 k shadow-utils x86_64 2:4.14.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M tar x86_64 2:1.35-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 855 k unzip x86_64 6.0-62.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 184 k util-linux x86_64 2.39.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M which x86_64 2.21-40.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 42 k xz x86_64 5.4.4-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 530 k Installing dependencies: alternatives x86_64 1.25-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k ansible-srpm-macros noarch 1-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k audit-libs x86_64 3.1.2-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 117 k authselect x86_64 1.4.2-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 139 k authselect-libs x86_64 1.4.2-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235 k basesystem noarch 11-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 k binutils x86_64 2.41-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.3 M binutils-gold x86_64 2.41-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 796 k bzip2-libs x86_64 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k ca-certificates noarch 2023.2.60_v7.0.306-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 837 k coreutils-common x86_64 9.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M cracklib x86_64 2.9.11-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 83 k crypto-policies noarch 20230731-1.git5ed06e0.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 68 k curl x86_64 8.3.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 354 k cyrus-sasl-lib x86_64 2.1.28-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 793 k debugedit x86_64 5.0-10.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 77 k dwz x86_64 0.15-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134 k ed x86_64 1.19-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 79 k 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gmp-6.2.1-5.fc39.x86_64.rpm 10 MB/s | 313 kB 00:00 (52/152): gnat-srpm-macros-6-3.fc39.noarch.rpm 438 kB/s | 8.8 kB 00:00 (53/152): go-srpm-macros-3.2.0-7.fc40.noarch.rp 1.2 MB/s | 27 kB 00:00 (54/152): grep-3.11-5.fc40.x86_64.rpm 11 MB/s | 287 kB 00:00 (55/152): gzip-1.12-6.fc39.x86_64.rpm 5.8 MB/s | 159 kB 00:00 (56/152): info-7.0.3-3.fc39.x86_64.rpm 8.3 MB/s | 182 kB 00:00 (57/152): kernel-srpm-macros-1.0-20.fc39.noarch 527 kB/s | 10 kB 00:00 (58/152): jansson-2.13.1-7.fc39.x86_64.rpm 1.6 MB/s | 44 kB 00:00 (59/152): keyutils-libs-1.6.1-7.fc39.x86_64.rpm 1.5 MB/s | 31 kB 00:00 (60/152): libacl-2.3.1-9.fc40.x86_64.rpm 981 kB/s | 23 kB 00:00 (61/152): krb5-libs-1.21.2-1.fc40.x86_64.rpm 26 MB/s | 760 kB 00:00 (62/152): libarchive-3.7.2-1.fc40.x86_64.rpm 14 MB/s | 408 kB 00:00 (63/152): libattr-2.5.1-9.fc40.x86_64.rpm 844 kB/s | 18 kB 00:00 (64/152): libblkid-2.39.2-1.fc40.x86_64.rpm 5.4 MB/s | 116 kB 00:00 (65/152): libbrotli-1.1.0-1.fc40.x86_64.rpm 12 MB/s | 336 kB 00:00 (66/152): libcap-2.48-7.fc39.x86_64.rpm 2.9 MB/s | 68 kB 00:00 (67/152): libcap-ng-0.8.3-8.fc40.x86_64.rpm 1.5 MB/s | 32 kB 00:00 (68/152): libcom_err-1.47.0-2.fc39.x86_64.rpm 1.0 MB/s | 26 kB 00:00 (69/152): libcurl-8.3.0-1.fc40.x86_64.rpm 14 MB/s | 344 kB 00:00 (70/152): libdb-5.3.28-58.fc40.x86_64.rpm 24 MB/s | 759 kB 00:00 (71/152): libeconf-0.5.2-1.fc40.x86_64.rpm 1.2 MB/s | 30 kB 00:00 (72/152): libevent-2.1.12-9.fc39.x86_64.rpm 9.2 MB/s | 258 kB 00:00 (73/152): libfdisk-2.39.2-1.fc40.x86_64.rpm 7.0 MB/s | 162 kB 00:00 (74/152): libffi-3.4.4-4.fc39.x86_64.rpm 1.9 MB/s | 40 kB 00:00 (75/152): libgcc-13.2.1-3.fc40.x86_64.rpm 5.2 MB/s | 110 kB 00:00 (76/152): libgomp-13.2.1-3.fc40.x86_64.rpm 13 MB/s | 319 kB 00:00 (77/152): libidn2-2.3.4-3.fc39.x86_64.rpm 4.5 MB/s | 111 kB 00:00 (78/152): libmount-2.39.2-1.fc40.x86_64.rpm 7.0 MB/s | 154 kB 00:00 (79/152): libnghttp2-1.56.0-1.fc40.x86_64.rpm 3.6 MB/s | 75 kB 00:00 (80/152): libnsl2-2.0.0-6.fc39.x86_64.rpm 1.4 MB/s | 30 kB 00:00 (81/152): libpkgconf-1.9.5-2.fc39.x86_64.rpm 1.8 MB/s | 38 kB 00:00 (82/152): libpsl-0.21.2-4.fc39.x86_64.rpm 2.9 MB/s | 63 kB 00:00 (83/152): libpwquality-1.4.5-6.fc39.x86_64.rpm 4.7 MB/s | 108 kB 00:00 (84/152): libselinux-3.5-5.fc39.x86_64.rpm 3.9 MB/s | 87 kB 00:00 (85/152): libsemanage-3.5-4.fc39.x86_64.rpm 5.6 MB/s | 120 kB 00:00 (86/152): libsepol-3.5-2.fc39.x86_64.rpm 13 MB/s | 324 kB 00:00 (87/152): libsigsegv-2.14-5.fc39.x86_64.rpm 1.1 MB/s | 27 kB 00:00 (88/152): libsmartcols-2.39.2-1.fc40.x86_64.rpm 2.9 MB/s | 67 kB 00:00 (89/152): libssh-0.10.5-2.fc39.x86_64.rpm 9.3 MB/s | 211 kB 00:00 (90/152): libssh-config-0.10.5-2.fc39.noarch.rp 453 kB/s | 9.2 kB 00:00 (91/152): libstdc++-13.2.1-3.fc40.x86_64.rpm 25 MB/s | 861 kB 00:00 (92/152): libtasn1-4.19.0-3.fc39.x86_64.rpm 2.9 MB/s | 74 kB 00:00 (93/152): libtirpc-1.3.3-1.rc2.fc39.x86_64.rpm 2.6 MB/s | 94 kB 00:00 (94/152): libutempter-1.2.1-10.fc39.x86_64.rpm 1.2 MB/s | 26 kB 00:00 (95/152): libunistring-1.1-5.fc40.x86_64.rpm 20 MB/s | 543 kB 00:00 (96/152): libuuid-2.39.2-1.fc40.x86_64.rpm 1.3 MB/s | 28 kB 00:00 (97/152): libverto-0.3.2-6.fc39.x86_64.rpm 841 kB/s | 20 kB 00:00 (98/152): libxcrypt-4.4.36-2.fc39.x86_64.rpm 5.3 MB/s | 119 kB 00:00 (99/152): libxml2-2.11.5-1.fc40.x86_64.rpm 23 MB/s | 698 kB 00:00 (100/152): libzstd-1.5.5-4.fc39.x86_64.rpm 11 MB/s | 309 kB 00:00 (101/152): lua-libs-5.4.6-3.fc39.x86_64.rpm 5.0 MB/s | 133 kB 00:00 (102/152): lua-srpm-macros-1-9.fc39.noarch.rpm 366 kB/s | 8.6 kB 00:00 (103/152): lz4-libs-1.9.4-4.fc39.x86_64.rpm 2.8 MB/s | 67 kB 00:00 (104/152): mpfr-4.2.0-3.fc39.x86_64.rpm 13 MB/s | 344 kB 00:00 (105/152): ncurses-base-6.4-7.20230520.fc40.noa 2.6 MB/s | 63 kB 00:00 (106/152): ocaml-srpm-macros-8-2.fc39.noarch.rp 698 kB/s | 14 kB 00:00 (107/152): ncurses-libs-6.4-7.20230520.fc40.x86 11 MB/s | 337 kB 00:00 (108/152): openblas-srpm-macros-2-14.fc39.noarc 366 kB/s | 7.5 kB 00:00 (109/152): openldap-2.6.6-1.fc39.x86_64.rpm 11 MB/s | 255 kB 00:00 (110/152): openssl-libs-3.1.1-4.fc40.x86_64.rpm 44 MB/s | 2.2 MB 00:00 (111/152): p11-kit-0.25.0-2.fc39.x86_64.rpm 11 MB/s | 472 kB 00:00 (112/152): p11-kit-trust-0.25.0-2.fc39.x86_64.r 3.5 MB/s | 142 kB 00:00 (113/152): package-notes-srpm-macros-0.5-9.fc39 380 kB/s | 11 kB 00:00 (114/152): pam-libs-1.5.3-2.fc39.x86_64.rpm 1.9 MB/s | 58 kB 00:00 (115/152): pam-1.5.3-2.fc39.x86_64.rpm 15 MB/s | 511 kB 00:00 (116/152): patch-2.7.6-22.fc39.x86_64.rpm 5.6 MB/s | 125 kB 00:00 (117/152): pcre2-10.42-1.fc39.2.x86_64.rpm 10 MB/s | 233 kB 00:00 (118/152): pcre2-syntax-10.42-1.fc39.2.noarch.r 6.3 MB/s | 143 kB 00:00 (119/152): perl-srpm-macros-1-51.fc39.noarch.rp 401 kB/s | 8.0 kB 00:00 (120/152): pkgconf-1.9.5-2.fc39.x86_64.rpm 2.1 MB/s | 42 kB 00:00 (121/152): pkgconf-m4-1.9.5-2.fc39.noarch.rpm 712 kB/s | 14 kB 00:00 (122/152): pkgconf-pkg-config-1.9.5-2.fc39.x86_ 505 kB/s | 9.6 kB 00:00 (123/152): popt-1.19-3.fc39.x86_64.rpm 2.8 MB/s | 59 kB 00:00 (124/152): publicsuffix-list-dafsa-20230812-1.f 2.7 MB/s | 57 kB 00:00 (125/152): pyproject-srpm-macros-1.9.0-2.fc39.n 683 kB/s | 14 kB 00:00 (126/152): qt5-srpm-macros-5.15.10-2.fc39.noarc 409 kB/s | 8.3 kB 00:00 (127/152): python-srpm-macros-3.12-4.fc40.noarc 1.1 MB/s | 25 kB 00:00 (128/152): qt6-srpm-macros-6.5.2-3.fc40.noarch. 409 kB/s | 9.0 kB 00:00 (129/152): redhat-rpm-config-266-1.fc40.noarch. 2.8 MB/s | 73 kB 00:00 (130/152): readline-8.2-4.fc39.x86_64.rpm 7.5 MB/s | 213 kB 00:00 (131/152): rpm-4.18.99-1.fc40.x86_64.rpm 17 MB/s | 510 kB 00:00 (132/152): rpm-build-libs-4.18.99-1.fc40.x86_64 3.9 MB/s | 96 kB 00:00 (133/152): rpm-build-4.18.99-1.fc40.x86_64.rpm 2.6 MB/s | 71 kB 00:00 (134/152): rpm-libs-4.18.99-1.fc40.x86_64.rpm 13 MB/s | 312 kB 00:00 (135/152): rust-srpm-macros-24-5.fc40.noarch.rp 510 kB/s | 12 kB 00:00 (136/152): rpm-sequoia-1.5.0-1.fc40.x86_64.rpm 25 MB/s | 883 kB 00:00 (137/152): sed-4.8-14.fc39.x86_64.rpm 11 MB/s | 297 kB 00:00 (138/152): setup-2.14.4-1.fc39.noarch.rpm 5.3 MB/s | 148 kB 00:00 (139/152): shadow-utils-4.14.0-1.fc40.x86_64.rp 33 MB/s | 1.2 MB 00:00 (140/152): sqlite-libs-3.43.1-1.fc40.x86_64.rpm 18 MB/s | 688 kB 00:00 (141/152): systemd-libs-254.2-7.fc40.x86_64.rpm 16 MB/s | 688 kB 00:00 (142/152): tar-1.35-2.fc40.x86_64.rpm 27 MB/s | 855 kB 00:00 (143/152): unzip-6.0-62.fc39.x86_64.rpm 6.3 MB/s | 184 kB 00:00 (144/152): util-linux-2.39.2-1.fc40.x86_64.rpm 35 MB/s | 1.1 MB 00:00 (145/152): which-2.21-40.fc39.x86_64.rpm 1.6 MB/s | 42 kB 00:00 (146/152): util-linux-core-2.39.2-1.fc40.x86_64 17 MB/s | 479 kB 00:00 (147/152): xxhash-libs-0.8.2-1.fc39.x86_64.rpm 1.8 MB/s | 37 kB 00:00 (148/152): xz-libs-5.4.4-1.fc39.x86_64.rpm 4.8 MB/s | 108 kB 00:00 (149/152): xz-5.4.4-1.fc39.x86_64.rpm 18 MB/s | 530 kB 00:00 (150/152): zip-3.0-39.fc40.x86_64.rpm 9.9 MB/s | 266 kB 00:00 (151/152): zlib-1.2.13-4.fc39.x86_64.rpm 4.5 MB/s | 94 kB 00:00 (152/152): zstd-1.5.5-4.fc39.x86_64.rpm 18 MB/s | 482 kB 00:00 -------------------------------------------------------------------------------- Total 34 MB/s | 52 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-3.fc40.x86_64 1/152 Running scriptlet: libgcc-13.2.1-3.fc40.x86_64 1/152 Installing : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 2/152 Running scriptlet: crypto-policies-20230731-1.git5ed06e0.fc39.noarc 2/152 Installing : fedora-release-identity-basic-40-0.7.noarch 3/152 Installing : fedora-repos-rawhide-40-0.1.noarch 4/152 Installing : fedora-gpg-keys-40-0.1.noarch 5/152 Installing : fedora-repos-40-0.1.noarch 6/152 Installing : fedora-release-common-40-0.7.noarch 7/152 Installing : fedora-release-40-0.7.noarch 8/152 Installing : setup-2.14.4-1.fc39.noarch 9/152 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.4-1.fc39.noarch 9/152 Installing : filesystem-3.18-6.fc39.x86_64 10/152 Installing : basesystem-11-18.fc39.noarch 11/152 Installing : rust-srpm-macros-24-5.fc40.noarch 12/152 Installing : qt6-srpm-macros-6.5.2-3.fc40.noarch 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: authselect-libs-1.4.2-3.fc39.x86_64 117/152 Installing : gzip-1.12-6.fc39.x86_64 118/152 Installing : cracklib-2.9.11-2.fc39.x86_64 119/152 Installing : libpwquality-1.4.5-6.fc39.x86_64 120/152 Installing : authselect-1.4.2-3.fc39.x86_64 121/152 Installing : libnsl2-2.0.0-6.fc39.x86_64 122/152 Installing : pam-1.5.3-2.fc39.x86_64 123/152 Installing : libssh-0.10.5-2.fc39.x86_64 124/152 Installing : libarchive-3.7.2-1.fc40.x86_64 125/152 Installing : libevent-2.1.12-9.fc39.x86_64 126/152 Installing : openldap-2.6.6-1.fc39.x86_64 127/152 Installing : libcurl-8.3.0-1.fc40.x86_64 128/152 Installing : elfutils-libs-0.189-6.fc40.x86_64 129/152 Installing : elfutils-debuginfod-client-0.189-6.fc40.x86_64 130/152 Installing : binutils-gold-2.41-5.fc40.x86_64 131/152 Running scriptlet: binutils-gold-2.41-5.fc40.x86_64 131/152 Installing : binutils-2.41-5.fc40.x86_64 132/152 Running scriptlet: binutils-2.41-5.fc40.x86_64 132/152 Installing : elfutils-0.189-6.fc40.x86_64 133/152 Installing : gdb-minimal-13.2-9.fc40.x86_64 134/152 Installing : debugedit-5.0-10.fc39.x86_64 135/152 Installing : curl-8.3.0-1.fc40.x86_64 136/152 Installing : rpm-sequoia-1.5.0-1.fc40.x86_64 137/152 Installing : rpm-libs-4.18.99-1.fc40.x86_64 138/152 Running scriptlet: rpm-4.18.99-1.fc40.x86_64 139/152 Installing : rpm-4.18.99-1.fc40.x86_64 139/152 Installing : efi-srpm-macros-5-9.fc39.noarch 140/152 Installing : lua-srpm-macros-1-9.fc39.noarch 141/152 Installing : rpm-build-libs-4.18.99-1.fc40.x86_64 142/152 Installing : ansible-srpm-macros-1-11.fc39.noarch 143/152 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 144/152 Installing : forge-srpm-macros-0.1.0-1.fc40.noarch 145/152 Installing : go-srpm-macros-3.2.0-7.fc40.noarch 146/152 Installing : python-srpm-macros-3.12-4.fc40.noarch 147/152 Installing : redhat-rpm-config-266-1.fc40.noarch 148/152 Installing : rpm-build-4.18.99-1.fc40.x86_64 149/152 Installing : util-linux-2.39.2-1.fc40.x86_64 150/152 Installing : which-2.21-40.fc39.x86_64 151/152 Installing : info-7.0.3-3.fc39.x86_64 152/152 Running scriptlet: filesystem-3.18-6.fc39.x86_64 152/152 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 152/152 Running scriptlet: authselect-libs-1.4.2-3.fc39.x86_64 152/152 Running scriptlet: rpm-4.18.99-1.fc40.x86_64 152/152 Running scriptlet: info-7.0.3-3.fc39.x86_64 152/152 Verifying : alternatives-1.25-1.fc39.x86_64 1/152 Verifying : ansible-srpm-macros-1-11.fc39.noarch 2/152 Verifying : audit-libs-3.1.2-4.fc40.x86_64 3/152 Verifying : authselect-1.4.2-3.fc39.x86_64 4/152 Verifying : authselect-libs-1.4.2-3.fc39.x86_64 5/152 Verifying : basesystem-11-18.fc39.noarch 6/152 Verifying : bash-5.2.15-5.fc39.x86_64 7/152 Verifying : binutils-2.41-5.fc40.x86_64 8/152 Verifying : binutils-gold-2.41-5.fc40.x86_64 9/152 Verifying : bzip2-1.0.8-16.fc39.x86_64 10/152 Verifying : bzip2-libs-1.0.8-16.fc39.x86_64 11/152 Verifying : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 12/152 Verifying : coreutils-9.4-1.fc40.x86_64 13/152 Verifying : coreutils-common-9.4-1.fc40.x86_64 14/152 Verifying : cpio-2.14-4.fc39.x86_64 15/152 Verifying : cracklib-2.9.11-2.fc39.x86_64 16/152 Verifying : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 17/152 Verifying : curl-8.3.0-1.fc40.x86_64 18/152 Verifying : cyrus-sasl-lib-2.1.28-11.fc39.x86_64 19/152 Verifying : debugedit-5.0-10.fc39.x86_64 20/152 Verifying : diffutils-3.10-3.fc39.x86_64 21/152 Verifying : dwz-0.15-3.fc39.x86_64 22/152 Verifying : ed-1.19-4.fc39.x86_64 23/152 Verifying : efi-srpm-macros-5-9.fc39.noarch 24/152 Verifying : elfutils-0.189-6.fc40.x86_64 25/152 Verifying : elfutils-debuginfod-client-0.189-6.fc40.x86_64 26/152 Verifying : elfutils-default-yama-scope-0.189-6.fc40.noarch 27/152 Verifying : elfutils-libelf-0.189-6.fc40.x86_64 28/152 Verifying : elfutils-libs-0.189-6.fc40.x86_64 29/152 Verifying : fedora-gpg-keys-40-0.1.noarch 30/152 Verifying : fedora-release-40-0.7.noarch 31/152 Verifying : fedora-release-common-40-0.7.noarch 32/152 Verifying : fedora-release-identity-basic-40-0.7.noarch 33/152 Verifying : fedora-repos-40-0.1.noarch 34/152 Verifying : fedora-repos-rawhide-40-0.1.noarch 35/152 Verifying : file-5.45-1.fc40.x86_64 36/152 Verifying : file-libs-5.45-1.fc40.x86_64 37/152 Verifying : filesystem-3.18-6.fc39.x86_64 38/152 Verifying : findutils-1:4.9.0-6.fc40.x86_64 39/152 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 40/152 Verifying : forge-srpm-macros-0.1.0-1.fc40.noarch 41/152 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 42/152 Verifying : gawk-5.2.2-2.fc39.x86_64 43/152 Verifying : gdb-minimal-13.2-9.fc40.x86_64 44/152 Verifying : gdbm-libs-1:1.23-4.fc39.x86_64 45/152 Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 46/152 Verifying : glibc-2.38.9000-9.fc40.x86_64 47/152 Verifying : glibc-common-2.38.9000-9.fc40.x86_64 48/152 Verifying : glibc-gconv-extra-2.38.9000-9.fc40.x86_64 49/152 Verifying : glibc-minimal-langpack-2.38.9000-9.fc40.x86_64 50/152 Verifying : gmp-1:6.2.1-5.fc39.x86_64 51/152 Verifying : gnat-srpm-macros-6-3.fc39.noarch 52/152 Verifying : go-srpm-macros-3.2.0-7.fc40.noarch 53/152 Verifying : grep-3.11-5.fc40.x86_64 54/152 Verifying : gzip-1.12-6.fc39.x86_64 55/152 Verifying : info-7.0.3-3.fc39.x86_64 56/152 Verifying : jansson-2.13.1-7.fc39.x86_64 57/152 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 58/152 Verifying : keyutils-libs-1.6.1-7.fc39.x86_64 59/152 Verifying : krb5-libs-1.21.2-1.fc40.x86_64 60/152 Verifying : libacl-2.3.1-9.fc40.x86_64 61/152 Verifying : libarchive-3.7.2-1.fc40.x86_64 62/152 Verifying : libattr-2.5.1-9.fc40.x86_64 63/152 Verifying : libblkid-2.39.2-1.fc40.x86_64 64/152 Verifying : libbrotli-1.1.0-1.fc40.x86_64 65/152 Verifying : libcap-2.48-7.fc39.x86_64 66/152 Verifying : libcap-ng-0.8.3-8.fc40.x86_64 67/152 Verifying : libcom_err-1.47.0-2.fc39.x86_64 68/152 Verifying : libcurl-8.3.0-1.fc40.x86_64 69/152 Verifying : libdb-5.3.28-58.fc40.x86_64 70/152 Verifying : libeconf-0.5.2-1.fc40.x86_64 71/152 Verifying : libevent-2.1.12-9.fc39.x86_64 72/152 Verifying : libfdisk-2.39.2-1.fc40.x86_64 73/152 Verifying : libffi-3.4.4-4.fc39.x86_64 74/152 Verifying : libgcc-13.2.1-3.fc40.x86_64 75/152 Verifying : libgomp-13.2.1-3.fc40.x86_64 76/152 Verifying : libidn2-2.3.4-3.fc39.x86_64 77/152 Verifying : libmount-2.39.2-1.fc40.x86_64 78/152 Verifying : libnghttp2-1.56.0-1.fc40.x86_64 79/152 Verifying : libnsl2-2.0.0-6.fc39.x86_64 80/152 Verifying : libpkgconf-1.9.5-2.fc39.x86_64 81/152 Verifying : libpsl-0.21.2-4.fc39.x86_64 82/152 Verifying : libpwquality-1.4.5-6.fc39.x86_64 83/152 Verifying : libselinux-3.5-5.fc39.x86_64 84/152 Verifying : libsemanage-3.5-4.fc39.x86_64 85/152 Verifying : libsepol-3.5-2.fc39.x86_64 86/152 Verifying : libsigsegv-2.14-5.fc39.x86_64 87/152 Verifying : libsmartcols-2.39.2-1.fc40.x86_64 88/152 Verifying : libssh-0.10.5-2.fc39.x86_64 89/152 Verifying : libssh-config-0.10.5-2.fc39.noarch 90/152 Verifying : libstdc++-13.2.1-3.fc40.x86_64 91/152 Verifying : libtasn1-4.19.0-3.fc39.x86_64 92/152 Verifying : libtirpc-1.3.3-1.rc2.fc39.x86_64 93/152 Verifying : libunistring-1.1-5.fc40.x86_64 94/152 Verifying : libutempter-1.2.1-10.fc39.x86_64 95/152 Verifying : libuuid-2.39.2-1.fc40.x86_64 96/152 Verifying : libverto-0.3.2-6.fc39.x86_64 97/152 Verifying : libxcrypt-4.4.36-2.fc39.x86_64 98/152 Verifying : libxml2-2.11.5-1.fc40.x86_64 99/152 Verifying : libzstd-1.5.5-4.fc39.x86_64 100/152 Verifying : lua-libs-5.4.6-3.fc39.x86_64 101/152 Verifying : lua-srpm-macros-1-9.fc39.noarch 102/152 Verifying : lz4-libs-1.9.4-4.fc39.x86_64 103/152 Verifying : mpfr-4.2.0-3.fc39.x86_64 104/152 Verifying : ncurses-base-6.4-7.20230520.fc40.noarch 105/152 Verifying : ncurses-libs-6.4-7.20230520.fc40.x86_64 106/152 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 107/152 Verifying : openblas-srpm-macros-2-14.fc39.noarch 108/152 Verifying : openldap-2.6.6-1.fc39.x86_64 109/152 Verifying : openssl-libs-1:3.1.1-4.fc40.x86_64 110/152 Verifying : p11-kit-0.25.0-2.fc39.x86_64 111/152 Verifying : p11-kit-trust-0.25.0-2.fc39.x86_64 112/152 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 113/152 Verifying : pam-1.5.3-2.fc39.x86_64 114/152 Verifying : pam-libs-1.5.3-2.fc39.x86_64 115/152 Verifying : patch-2.7.6-22.fc39.x86_64 116/152 Verifying : pcre2-10.42-1.fc39.2.x86_64 117/152 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 118/152 Verifying : perl-srpm-macros-1-51.fc39.noarch 119/152 Verifying : pkgconf-1.9.5-2.fc39.x86_64 120/152 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 121/152 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 122/152 Verifying : popt-1.19-3.fc39.x86_64 123/152 Verifying : publicsuffix-list-dafsa-20230812-1.fc40.noarch 124/152 Verifying : pyproject-srpm-macros-1.9.0-2.fc39.noarch 125/152 Verifying : python-srpm-macros-3.12-4.fc40.noarch 126/152 Verifying : qt5-srpm-macros-5.15.10-2.fc39.noarch 127/152 Verifying : qt6-srpm-macros-6.5.2-3.fc40.noarch 128/152 Verifying : readline-8.2-4.fc39.x86_64 129/152 Verifying : redhat-rpm-config-266-1.fc40.noarch 130/152 Verifying : rpm-4.18.99-1.fc40.x86_64 131/152 Verifying : rpm-build-4.18.99-1.fc40.x86_64 132/152 Verifying : rpm-build-libs-4.18.99-1.fc40.x86_64 133/152 Verifying : rpm-libs-4.18.99-1.fc40.x86_64 134/152 Verifying : rpm-sequoia-1.5.0-1.fc40.x86_64 135/152 Verifying : rust-srpm-macros-24-5.fc40.noarch 136/152 Verifying : sed-4.8-14.fc39.x86_64 137/152 Verifying : setup-2.14.4-1.fc39.noarch 138/152 Verifying : shadow-utils-2:4.14.0-1.fc40.x86_64 139/152 Verifying : sqlite-libs-3.43.1-1.fc40.x86_64 140/152 Verifying : systemd-libs-254.2-7.fc40.x86_64 141/152 Verifying : tar-2:1.35-2.fc40.x86_64 142/152 Verifying : unzip-6.0-62.fc39.x86_64 143/152 Verifying : util-linux-2.39.2-1.fc40.x86_64 144/152 Verifying : util-linux-core-2.39.2-1.fc40.x86_64 145/152 Verifying : which-2.21-40.fc39.x86_64 146/152 Verifying : xxhash-libs-0.8.2-1.fc39.x86_64 147/152 Verifying : xz-5.4.4-1.fc39.x86_64 148/152 Verifying : xz-libs-5.4.4-1.fc39.x86_64 149/152 Verifying : zip-3.0-39.fc40.x86_64 150/152 Verifying : zlib-1.2.13-4.fc39.x86_64 151/152 Verifying : zstd-1.5.5-4.fc39.x86_64 152/152 Installed: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.x86_64 authselect-1.4.2-3.fc39.x86_64 authselect-libs-1.4.2-3.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.x86_64 binutils-2.41-5.fc40.x86_64 binutils-gold-2.41-5.fc40.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.x86_64 coreutils-common-9.4-1.fc40.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.3.0-1.fc40.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-10.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.x86_64 elfutils-debuginfod-client-0.189-6.fc40.x86_64 elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.x86_64 elfutils-libs-0.189-6.fc40.x86_64 fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.7.noarch fedora-release-common-40-0.7.noarch fedora-release-identity-basic-40-0.7.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.x86_64 file-libs-5.45-1.fc40.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-6.fc40.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-13.2-9.fc40.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38.9000-9.fc40.x86_64 glibc-common-2.38.9000-9.fc40.x86_64 glibc-gconv-extra-2.38.9000-9.fc40.x86_64 glibc-minimal-langpack-2.38.9000-9.fc40.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch grep-3.11-5.fc40.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21.2-1.fc40.x86_64 libacl-2.3.1-9.fc40.x86_64 libarchive-3.7.2-1.fc40.x86_64 libattr-2.5.1-9.fc40.x86_64 libblkid-2.39.2-1.fc40.x86_64 libbrotli-1.1.0-1.fc40.x86_64 libcap-2.48-7.fc39.x86_64 libcap-ng-0.8.3-8.fc40.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.3.0-1.fc40.x86_64 libdb-5.3.28-58.fc40.x86_64 libeconf-0.5.2-1.fc40.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc40.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-3.fc40.x86_64 libgomp-13.2.1-3.fc40.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc40.x86_64 libnghttp2-1.56.0-1.fc40.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc40.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-3.fc40.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.3-1.rc2.fc39.x86_64 libunistring-1.1-5.fc40.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc40.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.11.5-1.fc40.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc40.noarch ncurses-libs-6.4-7.20230520.fc40.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-1:3.1.1-4.fc40.x86_64 p11-kit-0.25.0-2.fc39.x86_64 p11-kit-trust-0.25.0-2.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.x86_64 pam-libs-1.5.3-2.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-3.fc40.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-266-1.fc40.noarch rpm-4.18.99-1.fc40.x86_64 rpm-build-4.18.99-1.fc40.x86_64 rpm-build-libs-4.18.99-1.fc40.x86_64 rpm-libs-4.18.99-1.fc40.x86_64 rpm-sequoia-1.5.0-1.fc40.x86_64 rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-1.fc40.x86_64 sqlite-libs-3.43.1-1.fc40.x86_64 systemd-libs-254.2-7.fc40.x86_64 tar-2:1.35-2.fc40.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc40.x86_64 util-linux-core-2.39.2-1.fc40.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc40.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.5-4.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.x86_64 authselect-1.4.2-3.fc39.x86_64 authselect-libs-1.4.2-3.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.x86_64 binutils-2.41-5.fc40.x86_64 binutils-gold-2.41-5.fc40.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.x86_64 coreutils-common-9.4-1.fc40.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.3.0-1.fc40.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-10.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.x86_64 elfutils-debuginfod-client-0.189-6.fc40.x86_64 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pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-3.fc40.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-266-1.fc40.noarch rpm-4.18.99-1.fc40.x86_64 rpm-build-4.18.99-1.fc40.x86_64 rpm-build-libs-4.18.99-1.fc40.x86_64 rpm-libs-4.18.99-1.fc40.x86_64 rpm-sequoia-1.5.0-1.fc40.x86_64 rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-1.fc40.x86_64 sqlite-libs-3.43.1-1.fc40.x86_64 systemd-libs-254.2-7.fc40.x86_64 tar-1.35-2.fc40.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc40.x86_64 util-linux-core-2.39.2-1.fc40.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc40.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.5-4.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1695081600 Wrote: /builddir/build/SRPMS/libsonata-0.1.23-2.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1695135575.351555/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-x86_64-1695135575.351555/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1695135575.351555/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-r1_u4l9z/libsonata/libsonata.spec) Config(child) 1 minutes 51 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/libsonata-0.1.23-2.fc40.src.rpm) Config(fedora-39-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-bootstrap-1695135575.351555/root. INFO: reusing tmpfs at /var/lib/mock/fedora-39-x86_64-bootstrap-1695135575.351555/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1695135575.351555/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.18.99-1.fc39.x86_64 rpm-sequoia-1.5.0-1.fc39.x86_64 python3-dnf-4.16.2-4.fc40.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch yum-4.16.2-4.fc40.noarch Start: build phase for libsonata-0.1.23-2.fc40.src.rpm Start: build setup for libsonata-0.1.23-2.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1695081600 Wrote: /builddir/build/SRPMS/libsonata-0.1.23-2.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 36 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 59 kB/s | 3.8 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 48 MB/s | 70 MB 00:01 fedora 516 kB/s | 18 kB 00:00 fedora 1.9 MB/s | 1.7 MB 00:00 updates 774 kB/s | 24 kB 00:00 Dependencies resolved. ================================================================================================================================= Package Arch Version Repository Size ================================================================================================================================= Installing: boost-devel x86_64 1.81.0-7.fc39 fedora 14 M catch2-devel x86_64 2.13.10-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 197 k cmake x86_64 3.27.4-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.0 M fmt-devel x86_64 10.0.0-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 128 k gcc-c++ x86_64 13.2.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13 M git-core x86_64 2.41.0-2.fc39 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vim-filesystem noarch 2:9.0.1882-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 18 k zlib-devel x86_64 1.2.13-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 45 k Transaction Summary ================================================================================================================================= Install 112 Packages Total download size: 167 M Installed size: 717 M Downloading Packages: (1/112): pybind11-devel-2.11.1-1.fc39.x86_64.rp 2.2 MB/s | 168 kB 00:00 (2/112): annobin-docs-12.26-1.fc40.noarch.rpm 1.0 MB/s | 94 kB 00:00 (3/112): python3-pybind11-2.11.1-1.fc39.x86_64. 2.0 MB/s | 187 kB 00:00 (4/112): catch2-devel-2.13.10-2.fc39.x86_64.rpm 6.5 MB/s | 197 kB 00:00 (5/112): cmake-data-3.27.4-8.fc40.noarch.rpm 35 MB/s | 1.7 MB 00:00 (6/112): annobin-plugin-gcc-12.26-1.fc40.x86_64 8.7 MB/s | 958 kB 00:00 (7/112): cmake-filesystem-3.27.4-8.fc40.x86_64. 843 kB/s | 19 kB 00:00 (8/112): cmake-rpm-macros-3.27.4-8.fc40.noarch. 893 kB/s | 18 kB 00:00 (9/112): emacs-filesystem-29.1-1.fc39.noarch.rp 284 kB/s | 8.4 kB 00:00 (10/112): expat-2.5.0-3.fc39.x86_64.rpm 2.0 MB/s | 110 kB 00:00 (11/112): flexiblas-3.3.1-5.fc39.x86_64.rpm 600 kB/s | 33 kB 00:00 (12/112): cpp-13.2.1-3.fc40.x86_64.rpm 58 MB/s | 11 MB 00:00 (13/112): cmake-3.27.4-8.fc40.x86_64.rpm 26 MB/s | 8.0 MB 00:00 (14/112): flexiblas-openblas-openmp-3.3.1-5.fc3 689 kB/s | 17 kB 00:00 (15/112): fmt-10.0.0-3.fc39.x86_64.rpm 3.7 MB/s | 127 kB 00:00 (16/112): fmt-devel-10.0.0-3.fc39.x86_64.rpm 3.7 MB/s | 128 kB 00:00 (17/112): flexiblas-netlib-3.3.1-5.fc39.x86_64. 31 MB/s | 3.1 MB 00:00 (18/112): gc-8.2.2-4.fc39.x86_64.rpm 4.9 MB/s | 110 kB 00:00 (19/112): gcc-gfortran-13.2.1-3.fc40.x86_64.rpm 30 MB/s | 12 MB 00:00 (20/112): gcc-plugin-annobin-13.2.1-3.fc40.x86_ 1.0 MB/s | 48 kB 00:00 (21/112): git-core-2.41.0-2.fc39.x86_64.rpm 26 MB/s | 4.4 MB 00:00 (22/112): gcc-c++-13.2.1-3.fc40.x86_64.rpm 19 MB/s | 13 MB 00:00 (23/112): glibc-devel-2.38.9000-9.fc40.x86_64.r 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python3-pluggy-1.2.0-1.fc39.noarch.rp 2.1 MB/s | 48 kB 00:00 (68/112): python3-pytest-7.4.2-1.fc40.noarch.rp 32 MB/s | 1.8 MB 00:00 (69/112): python3-rpm-generators-14-7.fc39.noar 1.3 MB/s | 30 kB 00:00 (70/112): python3-numpy-1.24.4-2.fc39.x86_64.rp 32 MB/s | 7.5 MB 00:00 (71/112): python3-rpm-macros-3.12-4.fc40.noarch 666 kB/s | 14 kB 00:00 (72/112): python3-libs-3.12.0~rc2-1.fc40.x86_64 32 MB/s | 8.9 MB 00:00 (73/112): python3-setuptools_scm-7.1.0-7.fc39.n 3.3 MB/s | 93 kB 00:00 (74/112): python3-six-1.16.0-12.fc39.noarch.rpm 1.6 MB/s | 41 kB 00:00 (75/112): python3-typing-extensions-4.8.0-1.fc4 3.0 MB/s | 75 kB 00:00 (76/112): python3-setuptools-67.7.2-7.fc40.noar 24 MB/s | 1.4 MB 00:00 (77/112): python3-wheel-0.40.0-4.fc39.noarch.rp 6.3 MB/s | 146 kB 00:00 (78/112): rhash-1.4.3-3.fc39.x86_64.rpm 8.2 MB/s | 194 kB 00:00 (79/112): tzdata-2023c-3.fc40.noarch.rpm 17 MB/s | 433 kB 00:00 (80/112): zlib-devel-1.2.13-4.fc39.x86_64.rpm 2.1 MB/s | 45 kB 00:00 (81/112): 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boost-thread-1.81.0-7.fc39.x86_64.rp 1.2 MB/s | 59 kB 00:00 (110/112): boost-timer-1.81.0-7.fc39.x86_64.rpm 507 kB/s | 24 kB 00:00 (111/112): boost-type_erasure-1.81.0-7.fc39.x86 695 kB/s | 34 kB 00:00 (112/112): boost-wave-1.81.0-7.fc39.x86_64.rpm 3.6 MB/s | 225 kB 00:00 -------------------------------------------------------------------------------- Total 50 MB/s | 167 MB 00:03 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : boost-system-1.81.0-7.fc39.x86_64 1/112 Installing : cmake-filesystem-3.27.4-8.fc40.x86_64 2/112 Installing : boost-chrono-1.81.0-7.fc39.x86_64 3/112 Installing : boost-thread-1.81.0-7.fc39.x86_64 4/112 Installing : libicu-73.2-2.fc39.x86_64 5/112 Installing : libmpc-1.3.1-3.fc39.x86_64 6/112 Installing : libgfortran-13.2.1-3.fc40.x86_64 7/112 Installing : boost-regex-1.81.0-7.fc39.x86_64 8/112 Installing : boost-context-1.81.0-7.fc39.x86_64 9/112 Installing : boost-atomic-1.81.0-7.fc39.x86_64 10/112 Installing : boost-filesystem-1.81.0-7.fc39.x86_64 11/112 Installing : python-rpm-macros-3.12-4.fc40.noarch 12/112 Installing : libquadmath-13.2.1-3.fc40.x86_64 13/112 Installing : expat-2.5.0-3.fc39.x86_64 14/112 Installing : python3-rpm-macros-3.12-4.fc40.noarch 15/112 Installing : boost-date-time-1.81.0-7.fc39.x86_64 16/112 Installing : boost-container-1.81.0-7.fc39.x86_64 17/112 Installing : libstdc++-devel-13.2.1-3.fc40.x86_64 18/112 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python3-pip-23.2.1-1.fc39.noarch 72/112 Installing : python3-rpm-generators-14-7.fc39.noarch 73/112 Installing : python3-cached_property-1.5.2-11.fc39.noarch 74/112 Installing : python3-iniconfig-1.1.1-14.fc39.noarch 75/112 Installing : python3-pluggy-1.2.0-1.fc39.noarch 76/112 Installing : python3-six-1.16.0-12.fc39.noarch 77/112 Installing : python3-typing-extensions-4.8.0-1.fc40.noarch 78/112 Installing : less-643-1.fc40.x86_64 79/112 Installing : kernel-headers-6.6.0-0.rc2.git0.1.fc40.x86_64 80/112 Installing : jsoncpp-1.9.5-5.fc39.x86_64 81/112 Installing : glibc-headers-x86-2.38.9000-9.fc40.noarch 82/112 Installing : libxcrypt-devel-4.4.36-2.fc39.x86_64 83/112 Installing : glibc-devel-2.38.9000-9.fc40.x86_64 84/112 Installing : gc-8.2.2-4.fc39.x86_64 85/112 Installing : guile22-2.2.7-9.fc39.x86_64 86/112 Installing : make-1:4.4.1-2.fc39.x86_64 87/112 Installing : gcc-13.2.1-3.fc40.x86_64 88/112 Running scriptlet: gcc-13.2.1-3.fc40.x86_64 88/112 Installing : libquadmath-devel-13.2.1-3.fc40.x86_64 89/112 Installing : gcc-gfortran-13.2.1-3.fc40.x86_64 90/112 Installing : fmt-10.0.0-3.fc39.x86_64 91/112 Installing : emacs-filesystem-1:29.1-1.fc39.noarch 92/112 Installing : cmake-data-3.27.4-8.fc40.noarch 93/112 Installing : cmake-3.27.4-8.fc40.x86_64 94/112 Installing : pybind11-devel-2.11.1-1.fc39.x86_64 95/112 Installing : annobin-docs-12.26-1.fc40.noarch 96/112 Installing : annobin-plugin-gcc-12.26-1.fc40.x86_64 97/112 Running scriptlet: annobin-plugin-gcc-12.26-1.fc40.x86_64 97/112 Installing : python3-pybind11-2.11.1-1.fc39.x86_64 98/112 Installing : fmt-devel-10.0.0-3.fc39.x86_64 99/112 Installing : hdf5-devel-1.12.1-12.fc39.x86_64 100/112 Installing : boost-devel-1.81.0-7.fc39.x86_64 101/112 Installing : gcc-c++-13.2.1-3.fc40.x86_64 102/112 Installing : gcc-plugin-annobin-13.2.1-3.fc40.x86_64 103/112 Running scriptlet: gcc-plugin-annobin-13.2.1-3.fc40.x86_64 103/112 Installing : git-core-2.41.0-2.fc39.x86_64 104/112 Installing : python3-setuptools_scm-7.1.0-7.fc39.noarch 105/112 Installing : python3-h5py-3.8.0-4.fc39.x86_64 106/112 Installing : python3-pytest-7.4.2-1.fc40.noarch 107/112 Installing : python3-devel-3.12.0~rc2-1.fc40.x86_64 108/112 Installing : python3-wheel-1:0.40.0-4.fc39.noarch 109/112 Installing : json-devel-3.11.2-3.fc39.x86_64 110/112 Installing : catch2-devel-2.13.10-2.fc39.x86_64 111/112 Installing : highfive-devel-2.3.1-9.fc39.x86_64 112/112 Running scriptlet: highfive-devel-2.3.1-9.fc39.x86_64 112/112 Verifying : pybind11-devel-2.11.1-1.fc39.x86_64 1/112 Verifying : python3-pybind11-2.11.1-1.fc39.x86_64 2/112 Verifying : annobin-docs-12.26-1.fc40.noarch 3/112 Verifying : annobin-plugin-gcc-12.26-1.fc40.x86_64 4/112 Verifying : catch2-devel-2.13.10-2.fc39.x86_64 5/112 Verifying : cmake-3.27.4-8.fc40.x86_64 6/112 Verifying : cmake-data-3.27.4-8.fc40.noarch 7/112 Verifying : cmake-filesystem-3.27.4-8.fc40.x86_64 8/112 Verifying : cmake-rpm-macros-3.27.4-8.fc40.noarch 9/112 Verifying : cpp-13.2.1-3.fc40.x86_64 10/112 Verifying : emacs-filesystem-1:29.1-1.fc39.noarch 11/112 Verifying : expat-2.5.0-3.fc39.x86_64 12/112 Verifying : flexiblas-3.3.1-5.fc39.x86_64 13/112 Verifying : flexiblas-netlib-3.3.1-5.fc39.x86_64 14/112 Verifying : flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64 15/112 Verifying : fmt-10.0.0-3.fc39.x86_64 16/112 Verifying : fmt-devel-10.0.0-3.fc39.x86_64 17/112 Verifying : gc-8.2.2-4.fc39.x86_64 18/112 Verifying : gcc-13.2.1-3.fc40.x86_64 19/112 Verifying : gcc-c++-13.2.1-3.fc40.x86_64 20/112 Verifying : gcc-gfortran-13.2.1-3.fc40.x86_64 21/112 Verifying : gcc-plugin-annobin-13.2.1-3.fc40.x86_64 22/112 Verifying : git-core-2.41.0-2.fc39.x86_64 23/112 Verifying : glibc-devel-2.38.9000-9.fc40.x86_64 24/112 Verifying : glibc-headers-x86-2.38.9000-9.fc40.noarch 25/112 Verifying : guile22-2.2.7-9.fc39.x86_64 26/112 Verifying : hdf5-1.12.1-12.fc39.x86_64 27/112 Verifying : hdf5-devel-1.12.1-12.fc39.x86_64 28/112 Verifying : highfive-devel-2.3.1-9.fc39.x86_64 29/112 Verifying : json-devel-3.11.2-3.fc39.x86_64 30/112 Verifying : jsoncpp-1.9.5-5.fc39.x86_64 31/112 Verifying : kernel-headers-6.6.0-0.rc2.git0.1.fc40.x86_64 32/112 Verifying : less-643-1.fc40.x86_64 33/112 Verifying : libaec-1.0.6-5.fc39.x86_64 34/112 Verifying : libaec-devel-1.0.6-5.fc39.x86_64 35/112 Verifying : libb2-0.98.1-9.fc39.x86_64 36/112 Verifying : libcbor-0.10.2-2.fc39.x86_64 37/112 Verifying : libedit-3.1-48.20230828cvs.fc40.x86_64 38/112 Verifying : libfido2-1.13.0-3.fc39.x86_64 39/112 Verifying : libgfortran-13.2.1-3.fc40.x86_64 40/112 Verifying : libicu-73.2-2.fc39.x86_64 41/112 Verifying : libicu-devel-73.2-2.fc39.x86_64 42/112 Verifying : liblzf-3.6-26.fc39.x86_64 43/112 Verifying : libmpc-1.3.1-3.fc39.x86_64 44/112 Verifying : libquadmath-13.2.1-3.fc40.x86_64 45/112 Verifying : libquadmath-devel-13.2.1-3.fc40.x86_64 46/112 Verifying : libstdc++-devel-13.2.1-3.fc40.x86_64 47/112 Verifying : libtool-ltdl-2.4.7-8.fc40.x86_64 48/112 Verifying : libuv-1:1.46.0-2.fc39.x86_64 49/112 Verifying : libxcrypt-devel-4.4.36-2.fc39.x86_64 50/112 Verifying : make-1:4.4.1-2.fc39.x86_64 51/112 Verifying : mpdecimal-2.5.1-7.fc39.x86_64 52/112 Verifying : openblas-0.3.21-6.fc39.x86_64 53/112 Verifying : openblas-openmp-0.3.21-6.fc39.x86_64 54/112 Verifying : openssh-9.3p1-11.fc40.x86_64 55/112 Verifying : openssh-clients-9.3p1-11.fc40.x86_64 56/112 Verifying : pyproject-rpm-macros-1.9.0-2.fc39.noarch 57/112 Verifying : python-pip-wheel-23.2.1-1.fc39.noarch 58/112 Verifying : python-rpm-macros-3.12-4.fc40.noarch 59/112 Verifying : python3-3.12.0~rc2-1.fc40.x86_64 60/112 Verifying : python3-cached_property-1.5.2-11.fc39.noarch 61/112 Verifying : python3-devel-3.12.0~rc2-1.fc40.x86_64 62/112 Verifying : python3-h5py-3.8.0-4.fc39.x86_64 63/112 Verifying : python3-iniconfig-1.1.1-14.fc39.noarch 64/112 Verifying : python3-libs-3.12.0~rc2-1.fc40.x86_64 65/112 Verifying : python3-numpy-1:1.24.4-2.fc39.x86_64 66/112 Verifying : python3-packaging-23.1-5.fc40.noarch 67/112 Verifying : python3-pip-23.2.1-1.fc39.noarch 68/112 Verifying : python3-pluggy-1.2.0-1.fc39.noarch 69/112 Verifying : python3-pytest-7.4.2-1.fc40.noarch 70/112 Verifying : python3-rpm-generators-14-7.fc39.noarch 71/112 Verifying : python3-rpm-macros-3.12-4.fc40.noarch 72/112 Verifying : python3-setuptools-67.7.2-7.fc40.noarch 73/112 Verifying : python3-setuptools_scm-7.1.0-7.fc39.noarch 74/112 Verifying : python3-six-1.16.0-12.fc39.noarch 75/112 Verifying : python3-typing-extensions-4.8.0-1.fc40.noarch 76/112 Verifying : python3-wheel-1:0.40.0-4.fc39.noarch 77/112 Verifying : rhash-1.4.3-3.fc39.x86_64 78/112 Verifying : tzdata-2023c-3.fc40.noarch 79/112 Verifying : vim-filesystem-2:9.0.1882-1.fc40.noarch 80/112 Verifying : zlib-devel-1.2.13-4.fc39.x86_64 81/112 Verifying : boost-1.81.0-7.fc39.x86_64 82/112 Verifying : boost-atomic-1.81.0-7.fc39.x86_64 83/112 Verifying : boost-chrono-1.81.0-7.fc39.x86_64 84/112 Verifying : boost-container-1.81.0-7.fc39.x86_64 85/112 Verifying : boost-context-1.81.0-7.fc39.x86_64 86/112 Verifying : boost-contract-1.81.0-7.fc39.x86_64 87/112 Verifying : boost-coroutine-1.81.0-7.fc39.x86_64 88/112 Verifying : boost-date-time-1.81.0-7.fc39.x86_64 89/112 Verifying : boost-devel-1.81.0-7.fc39.x86_64 90/112 Verifying : boost-fiber-1.81.0-7.fc39.x86_64 91/112 Verifying : boost-filesystem-1.81.0-7.fc39.x86_64 92/112 Verifying : boost-graph-1.81.0-7.fc39.x86_64 93/112 Verifying : boost-iostreams-1.81.0-7.fc39.x86_64 94/112 Verifying : boost-json-1.81.0-7.fc39.x86_64 95/112 Verifying : boost-locale-1.81.0-7.fc39.x86_64 96/112 Verifying : boost-log-1.81.0-7.fc39.x86_64 97/112 Verifying : boost-math-1.81.0-7.fc39.x86_64 98/112 Verifying : boost-nowide-1.81.0-7.fc39.x86_64 99/112 Verifying : boost-numpy3-1.81.0-7.fc39.x86_64 100/112 Verifying : boost-program-options-1.81.0-7.fc39.x86_64 101/112 Verifying : boost-python3-1.81.0-7.fc39.x86_64 102/112 Verifying : boost-random-1.81.0-7.fc39.x86_64 103/112 Verifying : boost-regex-1.81.0-7.fc39.x86_64 104/112 Verifying : boost-serialization-1.81.0-7.fc39.x86_64 105/112 Verifying : boost-stacktrace-1.81.0-7.fc39.x86_64 106/112 Verifying : boost-system-1.81.0-7.fc39.x86_64 107/112 Verifying : boost-test-1.81.0-7.fc39.x86_64 108/112 Verifying : boost-thread-1.81.0-7.fc39.x86_64 109/112 Verifying : boost-timer-1.81.0-7.fc39.x86_64 110/112 Verifying : boost-type_erasure-1.81.0-7.fc39.x86_64 111/112 Verifying : boost-wave-1.81.0-7.fc39.x86_64 112/112 Installed: annobin-docs-12.26-1.fc40.noarch annobin-plugin-gcc-12.26-1.fc40.x86_64 boost-1.81.0-7.fc39.x86_64 boost-atomic-1.81.0-7.fc39.x86_64 boost-chrono-1.81.0-7.fc39.x86_64 boost-container-1.81.0-7.fc39.x86_64 boost-context-1.81.0-7.fc39.x86_64 boost-contract-1.81.0-7.fc39.x86_64 boost-coroutine-1.81.0-7.fc39.x86_64 boost-date-time-1.81.0-7.fc39.x86_64 boost-devel-1.81.0-7.fc39.x86_64 boost-fiber-1.81.0-7.fc39.x86_64 boost-filesystem-1.81.0-7.fc39.x86_64 boost-graph-1.81.0-7.fc39.x86_64 boost-iostreams-1.81.0-7.fc39.x86_64 boost-json-1.81.0-7.fc39.x86_64 boost-locale-1.81.0-7.fc39.x86_64 boost-log-1.81.0-7.fc39.x86_64 boost-math-1.81.0-7.fc39.x86_64 boost-nowide-1.81.0-7.fc39.x86_64 boost-numpy3-1.81.0-7.fc39.x86_64 boost-program-options-1.81.0-7.fc39.x86_64 boost-python3-1.81.0-7.fc39.x86_64 boost-random-1.81.0-7.fc39.x86_64 boost-regex-1.81.0-7.fc39.x86_64 boost-serialization-1.81.0-7.fc39.x86_64 boost-stacktrace-1.81.0-7.fc39.x86_64 boost-system-1.81.0-7.fc39.x86_64 boost-test-1.81.0-7.fc39.x86_64 boost-thread-1.81.0-7.fc39.x86_64 boost-timer-1.81.0-7.fc39.x86_64 boost-type_erasure-1.81.0-7.fc39.x86_64 boost-wave-1.81.0-7.fc39.x86_64 catch2-devel-2.13.10-2.fc39.x86_64 cmake-3.27.4-8.fc40.x86_64 cmake-data-3.27.4-8.fc40.noarch cmake-filesystem-3.27.4-8.fc40.x86_64 cmake-rpm-macros-3.27.4-8.fc40.noarch cpp-13.2.1-3.fc40.x86_64 emacs-filesystem-1:29.1-1.fc39.noarch expat-2.5.0-3.fc39.x86_64 flexiblas-3.3.1-5.fc39.x86_64 flexiblas-netlib-3.3.1-5.fc39.x86_64 flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64 fmt-10.0.0-3.fc39.x86_64 fmt-devel-10.0.0-3.fc39.x86_64 gc-8.2.2-4.fc39.x86_64 gcc-13.2.1-3.fc40.x86_64 gcc-c++-13.2.1-3.fc40.x86_64 gcc-gfortran-13.2.1-3.fc40.x86_64 gcc-plugin-annobin-13.2.1-3.fc40.x86_64 git-core-2.41.0-2.fc39.x86_64 glibc-devel-2.38.9000-9.fc40.x86_64 glibc-headers-x86-2.38.9000-9.fc40.noarch guile22-2.2.7-9.fc39.x86_64 hdf5-1.12.1-12.fc39.x86_64 hdf5-devel-1.12.1-12.fc39.x86_64 highfive-devel-2.3.1-9.fc39.x86_64 json-devel-3.11.2-3.fc39.x86_64 jsoncpp-1.9.5-5.fc39.x86_64 kernel-headers-6.6.0-0.rc2.git0.1.fc40.x86_64 less-643-1.fc40.x86_64 libaec-1.0.6-5.fc39.x86_64 libaec-devel-1.0.6-5.fc39.x86_64 libb2-0.98.1-9.fc39.x86_64 libcbor-0.10.2-2.fc39.x86_64 libedit-3.1-48.20230828cvs.fc40.x86_64 libfido2-1.13.0-3.fc39.x86_64 libgfortran-13.2.1-3.fc40.x86_64 libicu-73.2-2.fc39.x86_64 libicu-devel-73.2-2.fc39.x86_64 liblzf-3.6-26.fc39.x86_64 libmpc-1.3.1-3.fc39.x86_64 libquadmath-13.2.1-3.fc40.x86_64 libquadmath-devel-13.2.1-3.fc40.x86_64 libstdc++-devel-13.2.1-3.fc40.x86_64 libtool-ltdl-2.4.7-8.fc40.x86_64 libuv-1:1.46.0-2.fc39.x86_64 libxcrypt-devel-4.4.36-2.fc39.x86_64 make-1:4.4.1-2.fc39.x86_64 mpdecimal-2.5.1-7.fc39.x86_64 openblas-0.3.21-6.fc39.x86_64 openblas-openmp-0.3.21-6.fc39.x86_64 openssh-9.3p1-11.fc40.x86_64 openssh-clients-9.3p1-11.fc40.x86_64 pybind11-devel-2.11.1-1.fc39.x86_64 pyproject-rpm-macros-1.9.0-2.fc39.noarch python-pip-wheel-23.2.1-1.fc39.noarch python-rpm-macros-3.12-4.fc40.noarch python3-3.12.0~rc2-1.fc40.x86_64 python3-cached_property-1.5.2-11.fc39.noarch python3-devel-3.12.0~rc2-1.fc40.x86_64 python3-h5py-3.8.0-4.fc39.x86_64 python3-iniconfig-1.1.1-14.fc39.noarch python3-libs-3.12.0~rc2-1.fc40.x86_64 python3-numpy-1:1.24.4-2.fc39.x86_64 python3-packaging-23.1-5.fc40.noarch python3-pip-23.2.1-1.fc39.noarch python3-pluggy-1.2.0-1.fc39.noarch python3-pybind11-2.11.1-1.fc39.x86_64 python3-pytest-7.4.2-1.fc40.noarch python3-rpm-generators-14-7.fc39.noarch python3-rpm-macros-3.12-4.fc40.noarch python3-setuptools-67.7.2-7.fc40.noarch python3-setuptools_scm-7.1.0-7.fc39.noarch python3-six-1.16.0-12.fc39.noarch python3-typing-extensions-4.8.0-1.fc40.noarch python3-wheel-1:0.40.0-4.fc39.noarch rhash-1.4.3-3.fc39.x86_64 tzdata-2023c-3.fc40.noarch vim-filesystem-2:9.0.1882-1.fc40.noarch zlib-devel-1.2.13-4.fc39.x86_64 Complete! Finish: build setup for libsonata-0.1.23-2.fc40.src.rpm Start: rpmbuild libsonata-0.1.23-2.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1695081600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.jrWx8V + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf libsonata-0.1.23 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/libsonata-0.1.23.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd libsonata-0.1.23 + rm -rf /builddir/build/BUILD/libsonata-0.1.23-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'libsonata-0.1.23 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-include-catch-cmake.patch + /usr/bin/git apply --index --reject - Checking patch tests/CMakeLists.txt... Applied patch tests/CMakeLists.txt cleanly. + /usr/bin/git commit -q -m 0001-include-catch-cmake.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0002-use-cpp-17-filesystem.patch + /usr/bin/git apply --index --reject - Checking patch src/config.cpp... Applied patch src/config.cpp cleanly. + /usr/bin/git commit -q -m 0002-use-cpp-17-filesystem.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0003-Remove-pybind-redeclarations.patch + /usr/bin/git apply --index --reject - Checking patch python/bindings.cpp... Applied patch python/bindings.cpp cleanly. + /usr/bin/git commit -q -m 0003-Remove-pybind-redeclarations.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0004-disable-python-ext-build.patch + /usr/bin/git apply --index --reject - Checking patch setup.py... Applied patch setup.py cleanly. + /usr/bin/git commit -q -m 0004-disable-python-ext-build.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0005-set-libdir.patch + /usr/bin/git apply --index --reject - Checking patch CMakeLists.txt... Applied patch CMakeLists.txt cleanly. + /usr/bin/git commit -q -m 0005-set-libdir.patch --author 'rpm-build ' + rm -rf libsonata.egg-info + rm -rf extlib/Catch2 extlib/Highfive extlib/fmt extlib/nlohmann + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.AMqw9s + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.23 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DSONATA_PYTHON=ON -DEXTLIB_FROM_SUBMODULES=OFF -DSONATA_VERSION=0.1.23 -DSONATA_TESTS=ON -DSONATA_CXX_WARNINGS=OFF -DCMAKE_CXX_STANDARD=17 CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_policy): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 13.2.1 -- The CXX compiler identification is GNU 13.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- HIGHFIVE 2.3.1: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1") -- Found Boost: /usr/include (found version "1.81.0") found components: system serialization -- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.2") CMake Warning (dev) at /usr/share/cmake/pybind11/FindPythonLibsNew.cmake:98 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/share/cmake/pybind11/pybind11Common.cmake:188 (include) /usr/share/cmake/pybind11/pybind11Config.cmake:250 (include) python/CMakeLists.txt:6 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12", minimum required is "3.6") -- Found PythonLibs: /usr/lib64/libpython3.12.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.11.1") -- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets -- Configuring done (0.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j2 --verbose Change Dir: '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j2 /usr/bin/cmake -S/builddir/build/BUILD/libsonata-0.1.23 -B/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/CMakeFiles /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/sonata_shared.dir/build.make CMakeFiles/sonata_shared.dir/depend /usr/bin/gmake -f CMakeFiles/sonata_static.dir/build.make CMakeFiles/sonata_static.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/CMakeFiles/sonata_shared.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/CMakeFiles/sonata_static.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/sonata_shared.dir/build.make CMakeFiles/sonata_shared.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/sonata_static.dir/build.make CMakeFiles/sonata_static.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [ 2%] Building CXX object CMakeFiles/sonata_static.dir/src/common.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/common.cpp.o -MF CMakeFiles/sonata_static.dir/src/common.cpp.o.d -o CMakeFiles/sonata_static.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/common.cpp [ 5%] Building CXX object CMakeFiles/sonata_shared.dir/src/common.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/common.cpp.o -MF CMakeFiles/sonata_shared.dir/src/common.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/common.cpp [ 8%] Building CXX object CMakeFiles/sonata_shared.dir/src/config.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/config.cpp.o -MF CMakeFiles/sonata_shared.dir/src/config.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/config.cpp [ 11%] Building CXX object CMakeFiles/sonata_static.dir/src/config.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/config.cpp.o -MF CMakeFiles/sonata_static.dir/src/config.cpp.o.d -o CMakeFiles/sonata_static.dir/src/config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/config.cpp In file included from /usr/include/c++/13/bits/stl_uninitialized.h:63, from /usr/include/c++/13/memory:69, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/config.h:14, from /builddir/build/BUILD/libsonata-0.1.23/src/config.cpp:12: In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_uninitialized.h:63, from /usr/include/c++/13/memory:69, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/config.h:14, from /builddir/build/BUILD/libsonata-0.1.23/src/config.cpp:12: In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o -MF CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/edge_index.cpp [ 17%] Building CXX object CMakeFiles/sonata_static.dir/src/edge_index.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/edge_index.cpp.o -MF CMakeFiles/sonata_static.dir/src/edge_index.cpp.o.d -o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/edge_index.cpp [ 20%] Building CXX object CMakeFiles/sonata_static.dir/src/edges.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/edges.cpp.o -MF CMakeFiles/sonata_static.dir/src/edges.cpp.o.d -o CMakeFiles/sonata_static.dir/src/edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/edges.cpp [ 23%] Building CXX object CMakeFiles/sonata_shared.dir/src/edges.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/edges.cpp.o -MF CMakeFiles/sonata_shared.dir/src/edges.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/edges.cpp In file included from /usr/include/c++/13/array:43, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/common.h:12, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/population.h:12, from /builddir/build/BUILD/libsonata-0.1.23/src/edge_index.h:12, from /builddir/build/BUILD/libsonata-0.1.23/src/edges.cpp:10: In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3317:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/array:43, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/common.h:12, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/population.h:12, from /builddir/build/BUILD/libsonata-0.1.23/src/edge_index.h:12, from /builddir/build/BUILD/libsonata-0.1.23/src/edges.cpp:10: In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3317:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o -MF CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o.d -o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/hdf5_mutex.cpp [ 29%] Building CXX object CMakeFiles/sonata_static.dir/src/node_sets.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/node_sets.cpp.o -MF CMakeFiles/sonata_static.dir/src/node_sets.cpp.o.d -o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp: In function ‘bbp::sonata::detail::NodeSetRulePtr bbp::sonata::detail::_dispatch_node(const std::string&, const json&)’: /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:491:21: warning: possibly dangling reference to a temporary [-Wdangling-reference] 491 | const auto& key = definition.begin().key(); | ^~~ /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:491:49: note: the temporary was destroyed at the end of the full expression ‘nlohmann::json_abi_v3_11_2::basic_json::begin() const [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_2::adl_serializer; BinaryType = std::vector; const_iterator = nlohmann::json_abi_v3_11_2::detail::iter_impl >]().nlohmann::json_abi_v3_11_2::detail::iter_impl >::key()’ 491 | const auto& key = definition.begin().key(); | ~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:492:21: warning: possibly dangling reference to a temporary [-Wdangling-reference] 492 | const auto& value = definition.begin().value(); | ^~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:492:53: note: the temporary was destroyed at the end of the full expression ‘nlohmann::json_abi_v3_11_2::basic_json::begin() const [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_2::adl_serializer; BinaryType = std::vector; const_iterator = nlohmann::json_abi_v3_11_2::detail::iter_impl >]().nlohmann::json_abi_v3_11_2::detail::iter_impl >::value()’ 492 | const auto& value = definition.begin().value(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ [ 32%] Building CXX object CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o -MF CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/hdf5_mutex.cpp [ 35%] Building CXX object CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o -MF CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp: In function ‘bbp::sonata::detail::NodeSetRulePtr bbp::sonata::detail::_dispatch_node(const std::string&, const json&)’: /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:491:21: warning: possibly dangling reference to a temporary [-Wdangling-reference] 491 | const auto& key = definition.begin().key(); | ^~~ /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:491:49: note: the temporary was destroyed at the end of the full expression ‘nlohmann::json_abi_v3_11_2::basic_json::begin() const [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_2::adl_serializer; BinaryType = std::vector; const_iterator = nlohmann::json_abi_v3_11_2::detail::iter_impl >]().nlohmann::json_abi_v3_11_2::detail::iter_impl >::key()’ 491 | const auto& key = definition.begin().key(); | ~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:492:21: warning: possibly dangling reference to a temporary [-Wdangling-reference] 492 | const auto& value = definition.begin().value(); | ^~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:492:53: note: the temporary was destroyed at the end of the full expression ‘nlohmann::json_abi_v3_11_2::basic_json::begin() const [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_2::adl_serializer; BinaryType = std::vector; const_iterator = nlohmann::json_abi_v3_11_2::detail::iter_impl >]().nlohmann::json_abi_v3_11_2::detail::iter_impl >::value()’ 492 | const auto& value = definition.begin().value(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/algorithm:60, from /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:1: In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3310:17: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3317:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:60, from /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:1: In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3310:17: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3317:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/sonata_static.dir/src/nodes.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/nodes.cpp.o -MF CMakeFiles/sonata_static.dir/src/nodes.cpp.o.d -o CMakeFiles/sonata_static.dir/src/nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/nodes.cpp [ 41%] Building CXX object CMakeFiles/sonata_shared.dir/src/nodes.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/nodes.cpp.o -MF CMakeFiles/sonata_shared.dir/src/nodes.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/nodes.cpp In file included from /usr/include/c++/13/array:43, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/common.h:12, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/population.h:12, from /builddir/build/BUILD/libsonata-0.1.23/src/population.hpp:14, from /builddir/build/BUILD/libsonata-0.1.23/src/nodes.cpp:10: In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3294:19: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3310:17: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3317:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/array:43, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/common.h:12, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/population.h:12, from /builddir/build/BUILD/libsonata-0.1.23/src/population.hpp:14, from /builddir/build/BUILD/libsonata-0.1.23/src/nodes.cpp:10: In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3294:19: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3310:17: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3317:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/sonata_static.dir/src/population.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/population.cpp.o -MF CMakeFiles/sonata_static.dir/src/population.cpp.o.d -o CMakeFiles/sonata_static.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/population.cpp [ 47%] Building CXX object CMakeFiles/sonata_shared.dir/src/population.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/population.cpp.o -MF CMakeFiles/sonata_shared.dir/src/population.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/population.cpp In file included from /usr/include/c++/13/algorithm:60, from /builddir/build/BUILD/libsonata-0.1.23/src/population.cpp:10: In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3317:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:60, from /builddir/build/BUILD/libsonata-0.1.23/src/population.cpp:10: In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3317:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object CMakeFiles/sonata_static.dir/src/report_reader.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -MF CMakeFiles/sonata_static.dir/src/report_reader.cpp.o.d -o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp [ 52%] Building CXX object CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o -MF CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp In file included from /usr/include/c++/13/bits/stl_tree.h:63, from /usr/include/c++/13/map:62, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/report_reader.h:3, from /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:1: In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3317:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:63, from /usr/include/c++/13/map:62, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/report_reader.h:3, from /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp:1: In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3190:32: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::bigint::assign_pow10(int)’ at /usr/include/fmt/format.h:3197:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3291:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::__copy_move::__copy_m(unsigned int*, unsigned int*, unsigned int*)unsigned int*’, inlined from ‘std::__copy_move_a2(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy(unsigned int*, unsigned int*, unsigned int*)unsigned int*’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘fmt::v10::basic_memory_buffer >::grow(unsigned long)’ at /usr/include/fmt/format.h:952:28, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:927:39, inlined from ‘fmt::v10::detail::buffer::try_reserve(unsigned long)’ at /usr/include/fmt/core.h:926:24, inlined from ‘fmt::v10::detail::buffer::try_resize(unsigned long)’ at /usr/include/fmt/core.h:918:16, inlined from ‘fmt::v10::basic_memory_buffer >::resize(unsigned long)’ at /usr/include/fmt/format.h:1023:63, inlined from ‘fmt::v10::detail::bigint::assign(unsigned long)void’ at /usr/include/fmt/format.h:3096:19, inlined from ‘fmt::v10::detail::bigint::operator=(int)void’ at /usr/include/fmt/format.h:3117:11, inlined from ‘fmt::v10::detail::format_dragon(fmt::v10::detail::basic_fp, unsigned int, int, fmt::v10::detail::buffer&, int&) [clone .isra.0]’ at /usr/include/fmt/format.h:3317:11: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/sonata_static.dir/src/utils.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/utils.cpp.o -MF CMakeFiles/sonata_static.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_static.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/utils.cpp [ 58%] Building CXX object CMakeFiles/sonata_static.dir/src/version.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/version.cpp.o -MF CMakeFiles/sonata_static.dir/src/version.cpp.o.d -o CMakeFiles/sonata_static.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/src/version.cpp [ 61%] Linking CXX static library libsonata.a /usr/bin/cmake -P CMakeFiles/sonata_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsonata.a CMakeFiles/sonata_static.dir/src/common.cpp.o CMakeFiles/sonata_static.dir/src/config.cpp.o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o CMakeFiles/sonata_static.dir/src/edges.cpp.o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o CMakeFiles/sonata_static.dir/src/nodes.cpp.o CMakeFiles/sonata_static.dir/src/population.cpp.o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o CMakeFiles/sonata_static.dir/src/utils.cpp.o CMakeFiles/sonata_static.dir/src/version.cpp.o /usr/bin/ranlib libsonata.a gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [ 61%] Built target sonata_static [ 64%] Building CXX object CMakeFiles/sonata_shared.dir/src/utils.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/utils.cpp.o -MF CMakeFiles/sonata_shared.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/utils.cpp [ 67%] Building CXX object CMakeFiles/sonata_shared.dir/src/version.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/version.cpp.o -MF CMakeFiles/sonata_shared.dir/src/version.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/src/version.cpp /usr/bin/gmake -f python/CMakeFiles/sonata_python.dir/build.make python/CMakeFiles/sonata_python.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23/python /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/python /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/python/CMakeFiles/sonata_python.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f python/CMakeFiles/sonata_python.dir/build.make python/CMakeFiles/sonata_python.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [ 70%] Building CXX object python/CMakeFiles/sonata_python.dir/bindings.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/python && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -Dsonata_python_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT python/CMakeFiles/sonata_python.dir/bindings.cpp.o -MF CMakeFiles/sonata_python.dir/bindings.cpp.o.d -o CMakeFiles/sonata_python.dir/bindings.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/python/bindings.cpp [ 73%] Linking CXX shared library libsonata.so /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_shared.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsonata.so.0.1 -o libsonata.so.0.1.23 CMakeFiles/sonata_shared.dir/src/common.cpp.o CMakeFiles/sonata_shared.dir/src/config.cpp.o CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o CMakeFiles/sonata_shared.dir/src/edges.cpp.o CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o CMakeFiles/sonata_shared.dir/src/nodes.cpp.o CMakeFiles/sonata_shared.dir/src/population.cpp.o CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o CMakeFiles/sonata_shared.dir/src/utils.cpp.o CMakeFiles/sonata_shared.dir/src/version.cpp.o /usr/lib64/libhdf5.so /builddir/build/BUILD/libsonata-0.1.23/python/bindings.cpp: In lambda function: /builddir/build/BUILD/libsonata-0.1.23/python/bindings.cpp:424:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘pybind11::ssize_t’ {aka ‘long int’} [-Wsign-compare] 424 | for (size_t i = 0; i < raw.shape(0); ++i) { | ~~^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/edges.h:13, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/config.h:20, from /builddir/build/BUILD/libsonata-0.1.23/python/bindings.cpp:6: /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/population.h: In instantiation of ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = const long int*]’: /builddir/build/BUILD/libsonata-0.1.23/python/bindings.cpp:430:46: required from here /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/population.h:77:15: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘long unsigned int’ [-Wsign-compare] 77 | if (v == range.second) { | ~~^~~~~~~~~~~~~~~ [ 76%] Linking CXX shared module _libsonata.cpython-312-x86_64-linux-gnu.so cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_python.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o _libsonata.cpython-312-x86_64-linux-gnu.so CMakeFiles/sonata_python.dir/bindings.cpp.o ../libsonata.a /usr/lib64/libhdf5.so /usr/bin/cmake -E cmake_symlink_library libsonata.so.0.1.23 libsonata.so.0.1 libsonata.so gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [ 76%] Built target sonata_shared /usr/bin/gmake -f tests/CMakeFiles/unittests.dir/build.make tests/CMakeFiles/unittests.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23/tests /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests/CMakeFiles/unittests.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f tests/CMakeFiles/unittests.dir/build.make tests/CMakeFiles/unittests.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [ 79%] Building CXX object tests/CMakeFiles/unittests.dir/main.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/main.cpp.o -MF CMakeFiles/unittests.dir/main.cpp.o.d -o CMakeFiles/unittests.dir/main.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/main.cpp cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/python && /usr/bin/strip /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/python/_libsonata.cpython-312-x86_64-linux-gnu.so gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [ 79%] Built target sonata_python [ 82%] Building CXX object tests/CMakeFiles/unittests.dir/test_config.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_config.cpp.o -MF CMakeFiles/unittests.dir/test_config.cpp.o.d -o CMakeFiles/unittests.dir/test_config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/test_config.cpp [ 85%] Building CXX object tests/CMakeFiles/unittests.dir/test_edges.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_edges.cpp.o -MF CMakeFiles/unittests.dir/test_edges.cpp.o.d -o CMakeFiles/unittests.dir/test_edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/test_edges.cpp [ 88%] Building CXX object tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o -MF CMakeFiles/unittests.dir/test_node_sets.cpp.o.d -o CMakeFiles/unittests.dir/test_node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/test_node_sets.cpp [ 91%] Building CXX object tests/CMakeFiles/unittests.dir/test_nodes.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_nodes.cpp.o -MF CMakeFiles/unittests.dir/test_nodes.cpp.o.d -o CMakeFiles/unittests.dir/test_nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/test_nodes.cpp [ 94%] Building CXX object tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o -MF CMakeFiles/unittests.dir/test_report_reader.cpp.o.d -o CMakeFiles/unittests.dir/test_report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/test_report_reader.cpp In file included from /builddir/build/BUILD/libsonata-0.1.23/tests/test_report_reader.cpp:1: /builddir/build/BUILD/libsonata-0.1.23/tests/test_report_reader.cpp: In function ‘void testTimes(const std::vector&, double, double, int)’: /builddir/build/BUILD/libsonata-0.1.23/tests/test_report_reader.cpp:8:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 8 | REQUIRE(size == vec.size()); | ~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/libsonata-0.1.23/tests/test_report_reader.cpp:9:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 9 | for (int i = 0; i < vec.size(); ++i) { | ~~^~~~~~~~~~~~ [ 97%] Building CXX object tests/CMakeFiles/unittests.dir/test_selection.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_selection.cpp.o -MF CMakeFiles/unittests.dir/test_selection.cpp.o.d -o CMakeFiles/unittests.dir/test_selection.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/test_selection.cpp [100%] Linking CXX executable unittests cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unittests.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/unittests.dir/main.cpp.o CMakeFiles/unittests.dir/test_config.cpp.o CMakeFiles/unittests.dir/test_edges.cpp.o CMakeFiles/unittests.dir/test_node_sets.cpp.o CMakeFiles/unittests.dir/test_nodes.cpp.o CMakeFiles/unittests.dir/test_report_reader.cpp.o CMakeFiles/unittests.dir/test_selection.cpp.o -o unittests -Wl,-rpath,/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build ../libsonata.so.0.1.23 /usr/lib64/libhdf5.so cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/cmake -D TEST_TARGET=unittests -D TEST_EXECUTABLE=/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests/unittests -D TEST_EXECUTOR= -D TEST_WORKING_DIR=/builddir/build/BUILD/libsonata-0.1.23/tests -D TEST_SPEC= -D TEST_EXTRA_ARGS= -D TEST_PROPERTIES= -D TEST_PREFIX= -D TEST_SUFFIX= -D TEST_LIST=unittests_TESTS -D TEST_REPORTER= -D TEST_OUTPUT_DIR= -D TEST_OUTPUT_PREFIX= -D TEST_OUTPUT_SUFFIX= -D CTEST_FILE=/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests/unittests_tests-b12d07c.cmake -P /usr/lib64/cmake/Catch2/CatchAddTests.cmake gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [100%] Built target unittests gmake[1]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/CMakeFiles 0 + export SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + cp -a README.rst redhat-linux-build + cp -a setup.py redhat-linux-build + cp -a pyproject.toml redhat-linux-build + cp -a COPYING.LESSER redhat-linux-build + cp -a MANIFEST.in redhat-linux-build + mkdir -p redhat-linux-build/python/libsonata/ + cp -a python/libsonata/__init__.py redhat-linux-build/python/libsonata + pushd redhat-linux-build ~/build/BUILD/libsonata-0.1.23/redhat-linux-build ~/build/BUILD/libsonata-0.1.23 + mkdir -p /builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/libsonata-0.1.23/pyproject-wheeldir Processing /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-jhe3n7y2/libsonata.egg-info writing /builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-jhe3n7y2/libsonata.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-jhe3n7y2/libsonata.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-jhe3n7y2/libsonata.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-jhe3n7y2/libsonata.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-jhe3n7y2/libsonata.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-jhe3n7y2/libsonata.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'include' warning: no files found matching 'CMakeLists.txt' warning: no files found matching 'extlib/CMakeLists.txt' warning: no files found matching 'extlib/nlohmann/json.hpp' warning: no files found matching '*' under directory 'extlib/fmt/include' warning: no files found matching '*' under directory 'extlib/fmt/src' warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake' warning: no files found matching 'extlib/fmt/CMakeLists.txt' warning: no files found matching 'extlib/fmt/*.rst' warning: no files found matching '*' under directory 'extlib/HighFive/include' warning: no files found matching 'extlib/HighFive/CMakeLists.txt' warning: no files found matching 'extlib/HighFive/LICENSE' warning: no files found matching 'extlib/filesystem.hpp' warning: no files found matching '*' under directory 'python/pybind11/include' warning: no files found matching '*.cmake' under directory 'python/pybind11/tools' warning: no files found matching 'python/pybind11/CMakeLists.txt' warning: no files found matching 'python/pybind11/LICENSE' adding license file 'COPYING.LESSER' writing manifest file '/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-jhe3n7y2/libsonata.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-jhe3n7y2/libsonata-0.1.23.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: libsonata Building wheel for libsonata (pyproject.toml): started Running command Building wheel for libsonata (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-312 creating build/lib.linux-x86_64-cpython-312/libsonata copying python/libsonata/__init__.py -> build/lib.linux-x86_64-cpython-312/libsonata running build_ext installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/libsonata copying build/lib.linux-x86_64-cpython-312/libsonata/__init__.py -> build/bdist.linux-x86_64/wheel/libsonata running install_egg_info running egg_info creating python/libsonata.egg-info writing python/libsonata.egg-info/PKG-INFO writing dependency_links to python/libsonata.egg-info/dependency_links.txt writing requirements to python/libsonata.egg-info/requires.txt writing top-level names to python/libsonata.egg-info/top_level.txt writing manifest file 'python/libsonata.egg-info/SOURCES.txt' reading manifest file 'python/libsonata.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'include' warning: no files found matching 'CMakeLists.txt' warning: no files found matching 'extlib/CMakeLists.txt' warning: no files found matching 'extlib/nlohmann/json.hpp' warning: no files found matching '*' under directory 'extlib/fmt/include' warning: no files found matching '*' under directory 'extlib/fmt/src' warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake' warning: no files found matching 'extlib/fmt/CMakeLists.txt' warning: no files found matching 'extlib/fmt/*.rst' warning: no files found matching '*' under directory 'extlib/HighFive/include' warning: no files found matching 'extlib/HighFive/CMakeLists.txt' warning: no files found matching 'extlib/HighFive/LICENSE' warning: no files found matching 'extlib/filesystem.hpp' warning: no files found matching '*' under directory 'python/pybind11/include' warning: no files found matching '*.cmake' under directory 'python/pybind11/tools' warning: no files found matching 'python/pybind11/CMakeLists.txt' warning: no files found matching 'python/pybind11/LICENSE' adding license file 'COPYING.LESSER' writing manifest file 'python/libsonata.egg-info/SOURCES.txt' Copying python/libsonata.egg-info to build/bdist.linux-x86_64/wheel/libsonata-0.1.23-py3.12.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/libsonata-0.1.23.dist-info/WHEEL creating '/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-wheel-i42nd3i7/.tmp-s16ucuo0/libsonata-0.1.23-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'libsonata/__init__.py' adding 'libsonata-0.1.23.dist-info/COPYING.LESSER' adding 'libsonata-0.1.23.dist-info/METADATA' adding 'libsonata-0.1.23.dist-info/WHEEL' adding 'libsonata-0.1.23.dist-info/top_level.txt' adding 'libsonata-0.1.23.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for libsonata (pyproject.toml): finished with status 'done' Created wheel for libsonata: filename=libsonata-0.1.23-cp312-cp312-linux_x86_64.whl size=8556 sha256=29f61835db261c39460a24fd43f384ebf0e6511ef03070a1e6f09101a26fcff2 Stored in directory: /builddir/.cache/pip/wheels/a1/69/45/84665eb6941ba852c46a3b363d91189334ac3fc336fc2813bf Successfully built libsonata + popd + pushd tests/data ~/build/BUILD/libsonata-0.1.23 ~/build/BUILD/libsonata-0.1.23/tests/data ~/build/BUILD/libsonata-0.1.23 + /usr/bin/python3 generate.py + popd ~/build/BUILD/libsonata-0.1.23 + mkdir -p redhat-linux-build/tests + cp -a tests/data redhat-linux-build/tests + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.KcMcKy + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64 ++ dirname /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.23 + DESTDIR=/builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64 + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "" -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/lib64/libsonata.so.0.1.23 -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/lib64/libsonata.so.0.1 -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/lib64/libsonata.so -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/lib64/libsonata.a -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/include/bbp -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/include/bbp/sonata -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/include/bbp/sonata/variant.hpp -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/include/bbp/sonata/report_reader.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/include/bbp/sonata/population.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/include/bbp/sonata/optional.hpp -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/include/bbp/sonata/nodes.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/include/bbp/sonata/node_sets.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/include/bbp/sonata/edges.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/include/bbp/sonata/config.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/include/bbp/sonata/common.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/share/sonata/CMake/sonata-config.cmake -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/share/sonata/CMake/sonata-targets.cmake -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/share/sonata/CMake/sonata-targets-noconfig.cmake + rm -rf /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64//usr/lib64/libsonata.a + install -p -m 0655 -D -t /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64//usr/lib64/python3.12/site-packages/libsonata/ redhat-linux-build/python/_libsonata.cpython-312-x86_64-linux-gnu.so + export SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + pushd redhat-linux-build ~/build/BUILD/libsonata-0.1.23/redhat-linux-build ~/build/BUILD/libsonata-0.1.23 ++ ls /builddir/build/BUILD/libsonata-0.1.23/pyproject-wheeldir/libsonata-0.1.23-cp312-cp312-linux_x86_64.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ xargs basename --multiple + specifier=libsonata==0.1.23 + TMPDIR=/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/libsonata-0.1.23/pyproject-wheeldir libsonata==0.1.23 Using pip 23.2.1 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/libsonata-0.1.23/pyproject-wheeldir Processing /builddir/build/BUILD/libsonata-0.1.23/pyproject-wheeldir/libsonata-0.1.23-cp312-cp312-linux_x86_64.whl Installing collected packages: libsonata Successfully installed libsonata-0.1.23 + '[' -d /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/bin ']' + rm -f /builddir/build/BUILD/libsonata-0.1.23-2.fc40.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/lib/python3.12/site-packages ']' + '[' /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/lib/python3.12/site-packages ']' + '[' -d /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/lib64/python3.12/site-packages ']' + site_dirs+=("/usr/lib64/python3.12/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.12/site-packages/libsonata-0.1.23.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/lib64/python3.12/site-packages/libsonata-0.1.23.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64 --record /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/lib64/python3.12/site-packages/libsonata-0.1.23.dist-info/RECORD --output /builddir/build/BUILD/libsonata-0.1.23-2.fc40.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/lib64/python3.12/site-packages/libsonata-0.1.23.dist-info/RECORD removed '/builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/lib64/python3.12/site-packages/libsonata-0.1.23.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/lib64/python3.12/site-packages/libsonata-0.1.23.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/lib64/python3.12/site-packages/libsonata-0.1.23.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/libsonata-0.1.23-2.fc40.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=2 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/libsonata-0.1.23-2.fc40.x86_64-pyproject-files --output-modules /builddir/build/BUILD/libsonata-0.1.23-2.fc40.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/libsonata-0.1.23-2.fc40.x86_64-pyproject-record --prefix /usr libsonata + popd ~/build/BUILD/libsonata-0.1.23 + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.1.23-2.fc40 --unique-debug-suffix -0.1.23-2.fc40.x86_64 --unique-debug-src-base libsonata-0.1.23-2.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/libsonata-0.1.23 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/libsonata-0.1.23-2.fc40.x86_64 1082 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/lib64/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.AK8i56 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.23 + /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j2 tests Internal ctest changing into directory: /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build Test project /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build Start 1: Selection Start 2: SpikeReader 1/30 Test #1: Selection ....................................... Passed 0.00 sec Start 3: SomaReportReader limits 2/30 Test #2: SpikeReader ..................................... Passed 0.01 sec Start 4: SomaReportReader 3/30 Test #3: SomaReportReader limits ......................... Passed 0.01 sec Start 5: ElementReportReader limits 4/30 Test #4: SomaReportReader ................................ Passed 0.01 sec Start 6: ElementReportReader 5/30 Test #5: ElementReportReader limits ...................... Passed 0.01 sec Start 7: NodePopulation 6/30 Test #6: ElementReportReader ............................. Passed 0.01 sec Start 8: NodePopulationMove 7/30 Test #7: NodePopulation .................................. Passed 0.01 sec Start 9: NodePopulationSelectAll 8/30 Test #8: NodePopulationMove .............................. Passed 0.01 sec Start 10: NodePopulationmatchAttributeValues 9/30 Test #9: NodePopulationSelectAll ......................... Passed 0.01 sec Start 11: NodePopulationmatchAttributeValues - int8_t 10/30 Test #10: NodePopulationmatchAttributeValues .............. Passed 0.01 sec Start 12: NodePopulationmatchAttributeValues - uint8_t 11/30 Test #11: NodePopulationmatchAttributeValues - int8_t ..... Passed 0.01 sec Start 13: NodePopulationmatchAttributeValues - int16_t 12/30 Test #12: NodePopulationmatchAttributeValues - uint8_t .... Passed 0.01 sec Start 14: NodePopulationmatchAttributeValues - uint16_t 13/30 Test #13: NodePopulationmatchAttributeValues - int16_t .... Passed 0.01 sec Start 15: NodePopulationmatchAttributeValues - int32_t 14/30 Test #14: NodePopulationmatchAttributeValues - uint16_t ... Passed 0.01 sec Start 16: NodePopulationmatchAttributeValues - uint32_t 15/30 Test #15: NodePopulationmatchAttributeValues - int32_t .... Passed 0.01 sec Start 17: NodePopulationmatchAttributeValues - int64_t 16/30 Test #16: NodePopulationmatchAttributeValues - uint32_t ... Passed 0.01 sec Start 18: NodePopulationmatchAttributeValues - uint64_t 17/30 Test #17: NodePopulationmatchAttributeValues - int64_t .... Passed 0.01 sec Start 19: NodeSetParse 18/30 Test #18: NodePopulationmatchAttributeValues - uint64_t ... Passed 0.01 sec Start 20: NodeSetBasic 19/30 Test #19: NodeSetParse .................................... Passed 0.01 sec Start 21: NodeSetCompound 20/30 Test #20: NodeSetBasic .................................... Passed 0.01 sec Start 22: NodeSet 21/30 Test #21: NodeSetCompound ................................. Passed 0.01 sec Start 23: EdgePopulation 22/30 Test #22: NodeSet ......................................... Passed 0.01 sec Start 24: EdgePopulationSelectAll 23/30 Test #24: EdgePopulationSelectAll ......................... Passed 0.01 sec Start 25: EdgePopulation::writeIndices 24/30 Test #23: EdgePopulation .................................. Passed 0.01 sec Start 26: EdgeStorage 25/30 Test #26: EdgeStorage ..................................... Passed 0.00 sec Start 27: CircuitConfig 26/30 Test #25: EdgePopulation::writeIndices .................... Passed 0.01 sec Start 28: SimulationConfig 27/30 Test #27: CircuitConfig ................................... Passed 0.01 sec Start 29: SONATA 28/30 Test #29: SONATA .......................................... Passed 0.00 sec Start 30: unittests 29/30 Test #28: SimulationConfig ................................ Passed 0.01 sec 30/30 Test #30: unittests ....................................... Passed 0.05 sec 100% tests passed, 0 tests failed out of 30 Total Test time (real) = 0.15 sec + pushd python/tests ~/build/BUILD/libsonata-0.1.23/python/tests ~/build/BUILD/libsonata-0.1.23 + export PYTHONPATH=/builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64//usr/lib64/python3.12/site-packages/ + PYTHONPATH=/builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64//usr/lib64/python3.12/site-packages/ + /usr/bin/python3 -m unittest -v test_astrocyte_properties (test_config.TestCircuitConfig.test_astrocyte_properties) ... ok test_basic (test_config.TestCircuitConfig.test_basic) ... ok test_biophysical_properties_raises (test_config.TestCircuitConfig.test_biophysical_properties_raises) ... ok test_duplicate_population (test_config.TestCircuitConfig.test_duplicate_population) ... ok test_endfeet_properties (test_config.TestCircuitConfig.test_endfeet_properties) ... ok test_expanded_json (test_config.TestCircuitConfig.test_expanded_json) ... ok test_get_population_properties (test_config.TestCircuitConfig.test_get_population_properties) ... ok test_partial (test_config.TestCircuitConfig.test_partial) ... ok test_shadowing_morphs (test_config.TestCircuitConfig.test_shadowing_morphs) ... ok test_spatial_directories (test_config.TestCircuitConfig.test_spatial_directories) ... ok test_vasculature_properties (test_config.TestCircuitConfig.test_vasculature_properties) ... ok test_basic (test_config.TestSimulationConfig.test_basic) ... ok test_empty_connection_overrides (test_config.TestSimulationConfig.test_empty_connection_overrides) ... ok test_expanded_json (test_config.TestSimulationConfig.test_expanded_json) ... ok test_run (test_config.TestSimulationConfig.test_run) ... ok test_simulation_config_failures (test_config.TestSimulationConfig.test_simulation_config_failures) ... ok test_BasicScalarAnded (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarAnded) ... ok test_BasicScalarEnum (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarEnum) ... ok test_BasicScalarInt (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarInt) ... ok test_BasicScalarNodeId (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarNodeId) ... ok test_BasicScalarPopulation (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarPopulation) ... ok test_BasicScalarString (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarString) ... ok test_NodeSetCompound (test_nodesets.TestNodePopulationNodeSet.test_NodeSetCompound) ... ok test_NodeSetEmptyArray (test_nodesets.TestNodePopulationNodeSet.test_NodeSetEmptyArray) ... ok test_NodeSet_toJSON (test_nodesets.TestNodePopulationNodeSet.test_NodeSet_toJSON) ... ok test_library_datatype (test_nodesets.TestNodePopulationNodeSet.test_library_datatype) ... ok test_BasicScalarFailFloat (test_nodesets.TestNodeSetFailure.test_BasicScalarFailFloat) ... ok test_BasicScalarFailNegativeNodeIds (test_nodesets.TestNodeSetFailure.test_BasicScalarFailNegativeNodeIds) ... ok test_BasicScalarFailPopulation (test_nodesets.TestNodeSetFailure.test_BasicScalarFailPopulation) ... ok test_CorrectStructure (test_nodesets.TestNodeSetFailure.test_CorrectStructure) ... ok test_FailCompoundWithInt (test_nodesets.TestNodeSetFailure.test_FailCompoundWithInt) ... ok test_FaileRecursiveCompound (test_nodesets.TestNodeSetFailure.test_FaileRecursiveCompound) ... ok test_MissingBasic (test_nodesets.TestNodeSetFailure.test_MissingBasic) ... ok test_MissingFile (test_nodesets.TestNodeSetFailure.test_MissingFile) ... ok test_afferent_edges (test_population.TestEdgePopulation.test_afferent_edges) ... ok test_connecting_edges (test_population.TestEdgePopulation.test_connecting_edges) ... ok test_efferent_edges (test_population.TestEdgePopulation.test_efferent_edges) ... ok test_library_enumeration (test_population.TestEdgePopulation.test_library_enumeration) ... ok test_select_all (test_population.TestEdgePopulation.test_select_all) ... ok test_source (test_population.TestEdgePopulation.test_source) ... ok test_source_nodes (test_population.TestEdgePopulation.test_source_nodes) ... ok test_target (test_population.TestEdgePopulation.test_target) ... ok test_target_nodes (test_population.TestEdgePopulation.test_target_nodes) ... ok test_path_ctor (test_population.TestMisc.test_path_ctor) ... ok test_attribute_names (test_population.TestNodePopulation.test_attribute_names) ... ok test_enumeration_names (test_population.TestNodePopulation.test_enumeration_names) ... ok test_enumeration_values (test_population.TestNodePopulation.test_enumeration_values) ... ok test_get_attribute (test_population.TestNodePopulation.test_get_attribute) ... ok test_get_dynamics_attribute (test_population.TestNodePopulation.test_get_dynamics_attribute) ... ok test_match_values (test_population.TestNodePopulation.test_match_values) ... ok test_name (test_population.TestNodePopulation.test_name) ... ok test_select_all (test_population.TestNodePopulation.test_select_all) ... ok test_size (test_population.TestNodePopulation.test_size) ... ok test_basic (test_population.TestSelection.test_basic) ... ok test_comparison (test_population.TestSelection.test_comparison) ... ok test_dtypes (test_population.TestSelection.test_dtypes) ... ok test_from_ranges (test_population.TestSelection.test_from_ranges) ... ok test_from_values (test_population.TestSelection.test_from_values) ... ok test_from_values_empty (test_population.TestSelection.test_from_values_empty) ... ok test_union_intersection (test_population.TestSelection.test_union_intersection) ... ok test_block_gap_limit (test_reports.TestElementReportReader.test_block_gap_limit) ... ok test_get_all_population (test_reports.TestElementReportReader.test_get_all_population) ... ok test_get_inexistant_population (test_reports.TestElementReportReader.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0: #000: ../../src/H5G.c line 510 in H5Gopen2(): unable to open group major: Symbol table minor: Can't open object #001: ../../src/H5VLcallback.c line 4187 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #002: ../../src/H5VLcallback.c line 4154 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLnative_group.c line 123 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #004: ../../src/H5Gint.c line 270 in H5G__open_name(): group not found major: Symbol table minor: Object not found #005: ../../src/H5Gloc.c line 442 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #006: ../../src/H5Gtraverse.c line 837 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 613 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #008: ../../src/H5Gloc.c line 399 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_node_id_element_id_mapping (test_reports.TestElementReportReader.test_get_node_id_element_id_mapping) ... ok test_get_node_ids (test_reports.TestElementReportReader.test_get_node_ids) ... ok test_get_population (test_reports.TestElementReportReader.test_get_population) ... ok test_get_reports_from_population (test_reports.TestElementReportReader.test_get_reports_from_population) ... ok test_block_gap_limit (test_reports.TestSomaReportReader.test_block_gap_limit) ... ok test_get_all_population (test_reports.TestSomaReportReader.test_get_all_population) ... ok test_get_inexistant_population (test_reports.TestSomaReportReader.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0: #000: ../../src/H5G.c line 510 in H5Gopen2(): unable to open group major: Symbol table minor: Can't open object #001: ../../src/H5VLcallback.c line 4187 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #002: ../../src/H5VLcallback.c line 4154 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLnative_group.c line 123 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #004: ../../src/H5Gint.c line 270 in H5G__open_name(): group not found major: Symbol table minor: Object not found #005: ../../src/H5Gloc.c line 442 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #006: ../../src/H5Gtraverse.c line 837 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 613 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #008: ../../src/H5Gloc.c line 399 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_node_id_element_id_mapping (test_reports.TestSomaReportReader.test_get_node_id_element_id_mapping) ... ok test_get_population (test_reports.TestSomaReportReader.test_get_population) ... ok test_get_reports_from_population (test_reports.TestSomaReportReader.test_get_reports_from_population) ... ok test_getTimes_from_population (test_reports.TestSpikeReader.test_getTimes_from_population) ... ok test_get_all_populations (test_reports.TestSpikeReader.test_get_all_populations) ... ok test_get_inexistant_population (test_reports.TestSpikeReader.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0: #000: ../../src/H5G.c line 510 in H5Gopen2(): unable to open group major: Symbol table minor: Can't open object #001: ../../src/H5VLcallback.c line 4187 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #002: ../../src/H5VLcallback.c line 4154 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLnative_group.c line 123 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #004: ../../src/H5Gint.c line 270 in H5G__open_name(): group not found major: Symbol table minor: Object not found #005: ../../src/H5Gloc.c line 442 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #006: ../../src/H5Gtraverse.c line 837 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 613 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #008: ../../src/H5Gloc.c line 399 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_population (test_reports.TestSpikeReader.test_get_population) ... ok test_get_spikes_from_population (test_reports.TestSpikeReader.test_get_spikes_from_population) ... ok ---------------------------------------------------------------------- Ran 78 tests in 0.047s OK ~/build/BUILD/libsonata-0.1.23 + popd + RPM_EC=0 ++ jobs -p + exit 0 Processing files: libsonata-0.1.23-2.fc40.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.A6rrM1 + umask 022 + cd /builddir/build/BUILD + cd libsonata-0.1.23 + DOCDIR=/builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/share/doc/libsonata + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/share/doc/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23/README.rst /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/share/doc/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23/CHANGELOG.md /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/share/doc/libsonata + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.XwHNer + umask 022 + cd /builddir/build/BUILD + cd libsonata-0.1.23 + LICENSEDIR=/builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/share/licenses/libsonata + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/share/licenses/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23/COPYING.LESSER /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/share/licenses/libsonata + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsonata = 0.1.23-2.fc40 libsonata(x86-64) = 0.1.23-2.fc40 libsonata.so.0.1()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: libsonata-devel-0.1.23-2.fc40.x86_64 Provides: libsonata-devel = 0.1.23-2.fc40 libsonata-devel(x86-64) = 0.1.23-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsonata.so.0.1()(64bit) Processing files: python3-libsonata-0.1.23-2.fc40.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.aNaOKa + umask 022 + cd /builddir/build/BUILD + cd libsonata-0.1.23 + DOCDIR=/builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/share/doc/python3-libsonata + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/share/doc/python3-libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23/README.rst /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/share/doc/python3-libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23/CHANGELOG.md /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64/usr/share/doc/python3-libsonata + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-libsonata = 0.1.23-2.fc40 python3-libsonata = 0.1.23-2.fc40 python3-libsonata(x86-64) = 0.1.23-2.fc40 python3.12-libsonata = 0.1.23-2.fc40 python3.12dist(libsonata) = 0.1.23 python3dist(libsonata) = 0.1.23 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.12 python3.12dist(numpy) >= 1.17.3 rtld(GNU_HASH) Processing files: libsonata-debugsource-0.1.23-2.fc40.x86_64 Provides: libsonata-debugsource = 0.1.23-2.fc40 libsonata-debugsource(x86-64) = 0.1.23-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: libsonata-debuginfo-0.1.23-2.fc40.x86_64 Provides: debuginfo(build-id) = 9bf2330588a30bcf6b984fce6eb28b8258229cea libsonata-debuginfo = 0.1.23-2.fc40 libsonata-debuginfo(x86-64) = 0.1.23-2.fc40 libsonata.so.0.1.23-0.1.23-2.fc40.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsonata-debugsource(x86-64) = 0.1.23-2.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64 Wrote: /builddir/build/RPMS/python3-libsonata-0.1.23-2.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/libsonata-0.1.23-2.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/libsonata-debugsource-0.1.23-2.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/libsonata-devel-0.1.23-2.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/libsonata-debuginfo-0.1.23-2.fc40.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.m3nYK7 + umask 022 + cd /builddir/build/BUILD + cd libsonata-0.1.23 + /usr/bin/rm -rf /builddir/build/BUILDROOT/libsonata-0.1.23-2.fc40.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.jiccFQ + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/libsonata-0.1.23-SPECPARTS + rm -rf libsonata-0.1.23 libsonata-0.1.23.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild libsonata-0.1.23-2.fc40.src.rpm Finish: build phase for libsonata-0.1.23-2.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1695135575.351555/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-x86_64-1695135575.351555/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1695135575.351555/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/libsonata-0.1.23-2.fc40.src.rpm) Config(child) 4 minutes 11 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "libsonata-debuginfo", "epoch": null, "version": "0.1.23", "release": "2.fc40", "arch": "x86_64" }, { "name": "libsonata", "epoch": null, "version": "0.1.23", "release": "2.fc40", "arch": "x86_64" }, { "name": "python3-libsonata", "epoch": null, "version": "0.1.23", "release": "2.fc40", "arch": "x86_64" }, { "name": "libsonata-devel", "epoch": null, "version": "0.1.23", "release": "2.fc40", "arch": "x86_64" }, { "name": "libsonata", "epoch": null, "version": "0.1.23", "release": "2.fc40", "arch": "src" }, { "name": "libsonata-debugsource", "epoch": null, "version": "0.1.23", "release": "2.fc40", "arch": "x86_64" } ] } RPMResults finished